Start: 2025-08-13 23:26:09 GMT [stable] Package: r-bioc-gsva Version: 2.0.5+ds-1 Installed-Size: 1508 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, r-cran-cli, libc6 (>= 2.14) Suggests: r-bioc-biocgenerics, r-cran-runit, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-limma, r-cran-rcolorbrewer, r-bioc-org.hs.eg.db, r-bioc-genefilter, r-bioc-edger, r-bioc-gsvadata, r-cran-shiny, r-cran-shinydashboard, r-cran-ggplot2, r-cran-data.table, r-cran-plotly, r-cran-future, r-cran-promises, r-cran-shinyjs Description: Gene Set Variation Analysis for microarray and RNA-seq data Homepage: https://bioconductor.org/packages/GSVA/ Description-md5: e85ed23c3444b7c2da17d6196437f0f4 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.0.5+ds-1_amd64.deb Size: 1251220 MD5sum: e40a094e1549ed0d65d57b31fc7be527 SHA256: 6255c7c3c113358c8e25d2193ce5be775be757a58b0de6284f4d5afbc8bbabc7 [sid] Package: r-bioc-gsva Version: 2.0.5+ds-1 Installed-Size: 1508 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, r-cran-cli, libc6 (>= 2.14) Suggests: r-bioc-biocgenerics, r-cran-runit, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-limma, r-cran-rcolorbrewer, r-bioc-org.hs.eg.db, r-bioc-genefilter, r-bioc-edger, r-bioc-gsvadata, r-cran-shiny, r-cran-shinydashboard, r-cran-ggplot2, r-cran-data.table, r-cran-plotly, r-cran-future, r-cran-promises, r-cran-shinyjs Description: Gene Set Variation Analysis for microarray and RNA-seq data Homepage: https://bioconductor.org/packages/GSVA/ Description-md5: e85ed23c3444b7c2da17d6196437f0f4 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.0.5+ds-1_amd64.deb Size: 1251220 MD5sum: e40a094e1549ed0d65d57b31fc7be527 SHA256: 6255c7c3c113358c8e25d2193ce5be775be757a58b0de6284f4d5afbc8bbabc7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt r-bioc-gsva=2.0.5+ds-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508101417~1.6.0-7-g17c4ea32 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt r-bioc-gsva=2.0.5+ds-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-38-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.147-1 (2025-08-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzfto9dmz 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzfto9dmz 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzfto9dmz/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'update'] 0m2.0s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [138 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9668 kB] Fetched 9805 kB in 1s (10.1 MB/s) Reading package lists... 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'update'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: 8fc0def95551deb38dc214d6c9cce720 - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m4.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m4.5s INFO: Running scripts is_testable 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 0m4.8s DUMP: Package: r-bioc-gsva Version: 2.0.5+ds-1 Installed-Size: 1508 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, r-cran-cli, libc6 (>= 2.14) Suggests: r-bioc-biocgenerics, r-cran-runit, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-limma, r-cran-rcolorbrewer, r-bioc-org.hs.eg.db, r-bioc-genefilter, r-bioc-edger, r-bioc-gsvadata, r-cran-shiny, r-cran-shinydashboard, r-cran-ggplot2, r-cran-data.table, r-cran-plotly, r-cran-future, r-cran-promises, r-cran-shinyjs Description-en: Gene Set Variation Analysis for microarray and RNA-seq data Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene- set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross- tissue pathway analysis, in a pathway-centric manner. Description-md5: e85ed23c3444b7c2da17d6196437f0f4 Homepage: https://bioconductor.org/packages/GSVA/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.0.5+ds-1_amd64.deb Size: 1251220 MD5sum: e40a094e1549ed0d65d57b31fc7be527 SHA256: 6255c7c3c113358c8e25d2193ce5be775be757a58b0de6284f4d5afbc8bbabc7 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 0m4.8s INFO: apt-cache knows about the following packages: r-bioc-gsva 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy'] 0m4.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m4.9s DUMP: r-bioc-gsva: Installed: (none) Candidate: 2.0.5+ds-1 Version table: 2.0.5+ds-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 0m33.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler nettle-dev openssl pkgconf pkgconf-bin procps r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: doc-base krb5-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev dpkg-dev libcurl4-doc libidn-dev libfftw3-bin libfftw3-dev low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-user libhdf5-doc libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc liblcms2-utils libmagickcore-7.q16-10-extra libnghttp2-doc p11-kit-doc libssl-doc libstdc++-14-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-genefilter r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-biocstyle r-cran-knitr r-cran-rmarkdown r-cran-testthat r-cran-rcmdcheck r-bioc-all r-bioc-golubesets r-bioc-limma r-bioc-rtracklayer r-bioc-pwalign r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-residualmatrix r-bioc-bsgenome r-bioc-genomicfeatures r-cran-covr r-cran-lobstr r-cran-microbenchmark r-cran-profmem r-cran-r.utils r-bioc-txdbmaker r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-edger r-cran-digest r-cran-sparsem r-bioc-rbgl r-cran-cluster r-cran-rcolorbrewer r-bioc-gsvadata r-cran-shiny r-cran-shinydashboard r-cran-ggplot2 r-cran-plotly r-cran-future r-cran-promises r-cran-shinyjs r-bioc-experimenthub r-cran-markdown r-cran-bench r-cran-mockery r-cran-tinytest r-bioc-scrnaseq r-cran-rtsne r-bioc-dropletutils r-cran-rmariadb r-cran-rmysql r-cran-getopt r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-plm r-cran-zoo r-cran-survival readline-doc Recommended packages: manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common ghostscript fonts-urw-base35 libgpm2 publicsuffix libsasl2-modules libtasn1-doc psmisc linux-sysctl-defaults r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-roxygen2 r-cran-knitr r-cran-markdown r-cran-rmarkdown r-cran-ff r-cran-microbenchmark r-cran-callr r-cran-covr r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-lobstr r-cran-mockery r-cran-progress r-cran-scales r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils r-cran-rmariadb r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-shiny r-cran-testit r-cran-survival r-cran-pkgload r-cran-waldo r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse r-cran-av r-cran-rsvg r-cran-pdftools r-cran-irdisplay r-cran-base64enc r-cran-r.devices r-cran-sodium r-cran-diagrammer r-cran-formattable r-cran-lubridate r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-runit r-cran-fs r-cran-usethis r-cran-dbitest r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-plyr r-cran-evaluate r-cran-here r-cran-pkgbuild r-cran-data.table r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler nettle-dev openssl pkgconf pkgconf-bin procps r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 271 newly installed, 0 to remove and 0 not upgraded. Need to get 223 MB of archives. After this operation, 674 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.19.8-1 [11.7 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b3 [189 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.19.8-1 [15.3 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.19.8-1 [520 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:21 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b2 [29.5 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libraw23t64 amd64 0.21.4-2 [390 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [67.4 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.1.43+dfsg1-1 [1843 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.1.43+dfsg1-1 [340 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20250419 [162 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:51 http://deb.debian.org/debian trixie/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:52 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0052 [43.3 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.41-12 [58.2 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.12.38-1 [2627 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:65 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:74 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.2-1 [29.3 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get:88 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:89 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-2 [598 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.5.1-1 [2954 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.14.1-2 [510 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libhnswlib-dev all 0.8.0-1 [24.0 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 libmagick++-7.q16-5 amd64 8:7.1.1.43+dfsg1-1 [177 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Get:157 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-15 [235 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-29 [173 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.5.0-3 [28.6 MB] Get:174 http://deb.debian.org/debian trixie/main amd64 r-cran-littler amd64 0.3.21-1 [107 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 littler all 0.3.21-1 [16.9 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 r-bioc-biobase amd64 2.66.0-2 [2316 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 r-bioc-iranges amd64 2.40.1-3 [2310 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 r-cran-dbi all 1.2.3-1 [852 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 r-cran-bit amd64 4.6.0+dfsg-1 [455 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 r-cran-bit64 amd64 4.6.0-1-4 [489 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.5-3 [1709 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 r-cran-rsqlite amd64 2.3.9-1 [1216 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 r-cran-curl amd64 6.2.1+dfsg-1 [195 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B] Get:206 http://deb.debian.org/debian trixie/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] Get:209 http://deb.debian.org/debian trixie/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB] Get:212 http://deb.debian.org/debian trixie/main amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [190 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 r-bioc-annotationdbi all 1.68.0-2 [4703 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 r-cran-xml amd64 3.99-0.18-1 [1762 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1865 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 r-bioc-assorthead all 1.0.1+ds-2 [193 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 r-bioc-matrixgenerics all 1.18.1-1 [449 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:223 http://deb.debian.org/debian trixie/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [702 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1372 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2076 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpp amd64 1.0.14-1 [2080 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 r-bioc-beachmat amd64 2.22.0+ds-2 [896 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 r-cran-fansi amd64 1.0.6-2 [629 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 r-cran-purrr amd64 1.0.4-1 [556 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 r-cran-stringi amd64 1.8.4-1+b1 [896 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1247 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [302 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:252 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocparallel amd64 1.40.0-2 [1326 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 r-bioc-scaledmatrix all 1.14.0+dfsg-2 [326 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 r-cran-irlba amd64 2.3.5.1-4 [296 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocsingular amd64 1.22.0+ds-2 [356 kB] Get:257 http://deb.debian.org/debian trixie/main amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [942 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [504 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2092 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 r-bioc-graph amd64 1.84.1-2 [1284 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 r-bioc-gseabase all 1.68.0+ds-2 [716 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1116 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [835 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 r-cran-rjson amd64 0.2.23-1 [100.0 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 r-cran-magick amd64 2.8.5+dfsg-1+b1 [508 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 r-bioc-spatialexperiment all 1.16.0+ds-2 [960 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2 [104 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 r-bioc-rhdf5filters amd64 1.18.1+dfsg-1 [139 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1 [865 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 r-bioc-hdf5array amd64 1.34.0-2 [8788 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 r-bioc-gsva amd64 2.0.5+ds-1 [1251 kB] Preconfiguring packages ... Fetched 223 MB in 2s (140 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../001-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... 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Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../008-fontconfig-config_2.15.0-2.3_amd64.deb ... Unpacking fontconfig-config (2.15.0-2.3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../009-libfontconfig1_2.15.0-2.3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.3) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../010-libsharpyuv0_1.5.0-0.1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... Selecting previously unselected package libdav1d7:amd64. Preparing to unpack .../011-libdav1d7_1.5.1-1_amd64.deb ... Unpacking libdav1d7:amd64 (1.5.1-1) ... Selecting previously unselected package libheif-plugin-dav1d:amd64. Preparing to unpack .../012-libheif-plugin-dav1d_1.19.8-1_amd64.deb ... Unpacking libheif-plugin-dav1d:amd64 (1.19.8-1) ... Selecting previously unselected package libde265-0:amd64. 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Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../031-libwebpmux3_1.5.0-0.1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../032-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../033-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../034-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../035-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../036-libx11-6_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.12-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../161-libsm6_2%3a1.2.6-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../162-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... Selecting previously unselected package libtirpc-common. 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Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... Setting up r-bioc-beachmat (2.22.0+ds-2) ... Setting up r-bioc-scaledmatrix (1.14.0+dfsg-2) ... Setting up r-bioc-hdf5array (1.34.0-2) ... Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... Setting up r-bioc-biocsingular (1.22.0+ds-2) ... Setting up r-bioc-annotationdbi (1.68.0-2) ... Setting up r-bioc-annotate (1.84.0+dfsg-2) ... Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... Setting up r-bioc-gseabase (1.68.0+ds-2) ... Setting up libheif-plugin-dav1d:amd64 (1.19.8-1) ... Setting up libheif-plugin-libde265:amd64 (1.19.8-1) ... Setting up libheif1:amd64 (1.19.8-1) ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.1.43+dfsg1-1) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.1.43+dfsg1-1) ... Setting up libmagick++-7.q16-5:amd64 (8:7.1.1.43+dfsg1-1) ... Setting up r-cran-magick (2.8.5+dfsg-1+b1) ... Setting up r-bioc-spatialexperiment (1.16.0+ds-2) ... Setting up r-bioc-gsva (2.0.5+ds-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 0m33.1s INFO: Running scripts post_install 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_install_exceptions'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_install_exceptions'] 0m33.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m34.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m34.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpzfto9dmz to sid 0m34.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m34.8s INFO: Running scripts pre_distupgrade 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'update'] 0m37.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [216 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7418 kB] Fetched 17.8 MB in 2s (9535 kB/s) Reading package lists... 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'update'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-yf', 'dist-upgrade'] 0m45.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bsdutils gcc-14-base imagemagick-7-common libaec-dev libaec0 libapt-pkg7.0 libasan8 libatomic1 libaudit-common libaudit1 libblkid1 libcurl4-openssl-dev libcurl4t64 libdatrie1 libde265-0 libgcc-14-dev libgcc-s1 libgfortran5 libglib2.0-0t64 libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libhwasan0 libitm1 liblastlog2-2 liblsan0 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmount1 libopenjp2-7 libpng16-16t64 libquadmath0 libsmartcols1 libssl-dev libssl3t64 libstdc++-14-dev libstdc++6 libsystemd0 libsz2 libtsan2 libubsan1 libudev1 libuuid1 login mount openssl openssl-provider-legacy r-base-core r-cran-rcpp tzdata util-linux 56 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After this operation, 548 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.1-1 [110 kB] Get:3 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.1-1 [28.6 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.1-1 [37.7 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.1-1 [171 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.1-1 [209 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.1-1 [143 kB] Get:8 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.1-1 [1236 kB] Get:9 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.1-1 [162 kB] Get:10 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-1 [52.0 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-1 [71.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.2-1 [307 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.2-1 [2438 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-1 [736 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 258~rc2-2 [464 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 258~rc2-2 [156 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.1.4 [1182 kB] Get:19 http://deb.debian.org/debian sid/main amd64 apt amd64 3.1.4 [1478 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.5-1 [13.5 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.5-1 [59.4 kB] Get:22 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.1-1 [115 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 15.2.0-1 [140 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:26 http://deb.debian.org/debian sid/main amd64 imagemagick-7-common all 8:7.1.1.47+dfsg1-2 [67.8 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.1.47+dfsg1-2 [1847 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.1.47+dfsg1-2 [343 kB] Get:29 http://deb.debian.org/debian sid/main amd64 tzdata all 2025b-5 [260 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 15.2.0-1 [2780 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 15.2.0-1 [1108 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.3.0-5 [2651 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 15.2.0-1 [26.5 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 15.2.0-1 [9492 B] Get:35 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 15.2.0-1 [1248 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 15.2.0-1 [1538 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 15.2.0-1 [146 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.3.0-5 [2671 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 15.2.0-1 [2492 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-1 [862 kB] Get:41 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.3.0-5 [51.5 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get:45 http://deb.debian.org/debian sid/main amd64 libcurl4-openssl-dev amd64 8.15.0-1 [511 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.4-2 [1517 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libgnutls28-dev amd64 3.8.10-2 [1423 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libgnutls-dane0t64 amd64 3.8.10-2 [458 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libgnutls-openssl27t64 amd64 3.8.10-2 [458 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libmagick++-7.q16-5 amd64 8:7.1.1.47+dfsg1-2 [178 kB] Get:55 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get:56 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.5.1-1 [28.7 MB] Get:57 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.1.0-1 [2114 kB] Preconfiguring packages ... Fetched 69.9 MB in 0s (192 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40199 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40202 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.5-1_all.deb ... Unpacking libaudit-common (1:4.0.5-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40202 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.5-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.5-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40201 files and directories currently installed.) Preparing to unpack .../00-login_1%3a4.16.0-2+really2.41.1-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../01-libgomp1_15.2.0-1_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-1) over (14.2.0-19) ... Preparing to unpack .../02-libopenjp2-7_2.5.3-2.1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.3-2.1) over (2.5.3-2) ... 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Preparing to unpack .../33-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) over (3.5.1-1) ... Preparing to unpack .../34-r-base-core_4.5.1-1_amd64.deb ... Unpacking r-base-core (4.5.1-1) over (4.5.0-3) ... Preparing to unpack .../35-r-cran-rcpp_1.1.0-1_amd64.deb ... Unpacking r-cran-rcpp (1.1.0-1) over (1.0.14-1) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.10-2) ... Setting up libdatrie1:amd64 (0.2.13-4) ... Setting up libcurl4t64:amd64 (8.15.0-1) ... Setting up gcc-14-base:amd64 (14.3.0-5) ... Setting up imagemagick-7-common (8:7.1.1.47+dfsg1-2) ... Installing new version of config file /etc/ImageMagick-7/delegates.xml ... Setting up libgomp1:amd64 (15.2.0-1) ... Setting up libaec0:amd64 (1.1.4-2) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Aug 13 23:26:55 UTC 2025. Universal Time is now: Wed Aug 13 23:26:55 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgnutls-dane0t64:amd64 (3.8.10-2) ... Setting up libquadmath0:amd64 (15.2.0-1) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libatomic1:amd64 (15.2.0-1) ... Setting up libgfortran5:amd64 (15.2.0-1) ... Setting up libubsan1:amd64 (15.2.0-1) ... Setting up mount (2.41.1-1) ... Setting up libhwasan0:amd64 (15.2.0-1) ... Setting up libasan8:amd64 (15.2.0-1) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libtsan2:amd64 (15.2.0-1) ... Setting up libde265-0:amd64 (1.0.16-1) ... Setting up openssl (3.5.2-1) ... Setting up liblsan0:amd64 (15.2.0-1) ... Setting up libsz2:amd64 (1.1.4-2) ... Setting up libitm1:amd64 (15.2.0-1) ... Setting up login (1:4.16.0-2+really2.41.1-1) ... Setting up libgnutls28-dev:amd64 (3.8.10-2) ... Setting up libaec-dev:amd64 (1.1.4-2) ... Setting up libglib2.0-0t64:amd64 (2.84.4-2) ... No schema files found: doing nothing. Setting up libcurl4-openssl-dev:amd64 (8.15.0-1) ... Setting up r-base-core (4.5.1-1) ... Installing new version of config file /etc/R/Makeconf ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.1.47+dfsg1-2) ... Setting up libgcc-14-dev:amd64 (14.3.0-5) ... Setting up libstdc++-14-dev:amd64 (14.3.0-5) ... Setting up r-cran-rcpp (1.1.0-1) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.1.47+dfsg1-2) ... Setting up libmagick++-7.q16-5:amd64 (8:7.1.1.47+dfsg1-2) ... Processing triggers for libc-bin (2.41-12) ... 0m45.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-yf', 'dist-upgrade'] 0m45.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.1s DUMP: 3e28c665f7d60cc2926320cfbb2dd863 - 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 0m47.4s DUMP: Package: r-bioc-gsva Version: 2.0.5+ds-1 Installed-Size: 1508 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, r-cran-cli, libc6 (>= 2.14) Suggests: r-bioc-biocgenerics, r-cran-runit, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-limma, r-cran-rcolorbrewer, r-bioc-org.hs.eg.db, r-bioc-genefilter, r-bioc-edger, r-bioc-gsvadata, r-cran-shiny, r-cran-shinydashboard, r-cran-ggplot2, r-cran-data.table, r-cran-plotly, r-cran-future, r-cran-promises, r-cran-shinyjs Description-en: Gene Set Variation Analysis for microarray and RNA-seq data Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene- set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross- tissue pathway analysis, in a pathway-centric manner. Description-md5: e85ed23c3444b7c2da17d6196437f0f4 Homepage: https://bioconductor.org/packages/GSVA/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.0.5+ds-1_amd64.deb Size: 1251220 MD5sum: e40a094e1549ed0d65d57b31fc7be527 SHA256: 6255c7c3c113358c8e25d2193ce5be775be757a58b0de6284f4d5afbc8bbabc7 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 0m47.4s INFO: apt-cache knows about the following packages: r-bioc-gsva 0m47.4s INFO: Running scripts pre_install 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_database-server'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_database-server'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_exceptions'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_exceptions'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_extras'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_extras'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy'] 0m47.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m47.5s DUMP: r-bioc-gsva: Installed: 2.0.5+ds-1 Candidate: 2.0.5+ds-1 Version table: *** 2.0.5+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 0m48.0s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-gsva is already the newest version (2.0.5+ds-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 0m48.0s INFO: Running scripts post_install 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_install_exceptions'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_install_exceptions'] 0m48.0s INFO: Running scripts post_distupgrade 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m49.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m49.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m51.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m51.4s INFO: Running scripts pre_install 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_database-server'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_database-server'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_exceptions'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_exceptions'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_extras'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_extras'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy'] 0m51.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m51.5s DUMP: r-bioc-gsva: Installed: 2.0.5+ds-1 Candidate: 2.0.5+ds-1 Version table: *** 2.0.5+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.0.5+ds-1'] 0m52.4s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-gsva is already the newest version (2.0.5+ds-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.0.5+ds-1'] 0m52.4s INFO: Running scripts post_install 0m52.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_install_exceptions'] 0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_install_exceptions'] 0m52.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m54.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 0m56.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', '-ac', '--ignore-obsolete'] 0m59.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', '-ac', '--ignore-obsolete'] 0m59.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m59.7s DUMP: 0.15.9~deb12u1 0m59.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m59.7s INFO: Running adequate version 0.15.9~deb12u1 now. 0m59.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'r-bioc-gsva'] 0m59.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'r-bioc-gsva'] 0m59.8s INFO: Running scripts pre_remove 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_exceptions'] 1m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/pre_remove_exceptions'] 1m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m7.8s DUMP: install ok installed apt apt 3.1.4 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41.1-1 install ok installed ca-certificates ca-certificates 20250419 install ok installed comerr-dev:amd64 comerr-dev 2.1-1.47.2-3+b3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2.3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-5 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hdf5-helpers hdf5-helpers 1.14.5+repack-3 install ok installed hostname hostname 3.25 install ok installed imagemagick-7-common imagemagick-7-common 8:7.1.1.47+dfsg1-2 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed krb5-multidev:amd64 krb5-multidev 1.21.3-5 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec-dev:amd64 libaec-dev 1.1.4-2 install ok installed libaec0:amd64 libaec0 1.1.4-2 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.4 install ok installed libasan8:amd64 libasan8 15.2.0-1 install ok installed libatomic1:amd64 libatomic1 15.2.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libblas3:amd64 libblas3 3.12.1-6 install ok installed libblkid1:amd64 libblkid1 2.41.1-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b2 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4.2 install ok installed libbrotli-dev:amd64 libbrotli-dev 1.1.0-2+b7 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc-dev-bin libc-dev-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libc6-dev:amd64 libc6-dev 2.41-12 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl4-openssl-dev:amd64 libcurl4-openssl-dev 8.15.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.15.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-4 install ok installed libdav1d7:amd64 libdav1d7 1.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libde265-0:amd64 libde265-0 1.0.16-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libevent-2.1-7t64:amd64 libevent-2.1-7t64 2.1.12-stable-10+b1 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libffi8:amd64 libffi8 3.4.8-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.10-2+b1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.3.0-5 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-1 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.4-2 install ok installed libgmp-dev:amd64 libgmp-dev 2:6.3.0+dfsg-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.3.0+dfsg-3 install ok installed libgnutls-dane0t64:amd64 libgnutls-dane0t64 3.8.10-2 install ok installed libgnutls-openssl27t64:amd64 libgnutls-openssl27t64 3.8.10-2 install ok installed libgnutls28-dev:amd64 libgnutls28-dev 3.8.10-2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.10-2 install ok installed libgomp1:amd64 libgomp1 15.2.0-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libgssrpc4t64:amd64 libgssrpc4t64 1.21.3-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-cpp-310:amd64 libhdf5-cpp-310 1.14.5+repack-3 install ok installed libhdf5-dev libhdf5-dev 1.14.5+repack-3 install ok installed libhdf5-fortran-310:amd64 libhdf5-fortran-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libhdf5-hl-cpp-310:amd64 libhdf5-hl-cpp-310 1.14.5+repack-3 install ok installed libhdf5-hl-fortran-310:amd64 libhdf5-hl-fortran-310 1.14.5+repack-3 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.19.8-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.19.8-1 install ok installed libheif1:amd64 libheif1 1.19.8-1 install ok installed libhnswlib-dev libhnswlib-dev 0.8.0-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhwasan0:amd64 libhwasan0 15.2.0-1 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu76:amd64 libicu76 76.1-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libidn2-dev:amd64 libidn2-dev 2.3.8-2 install ok installed libitm1:amd64 libitm1 15.2.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.1.5-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.1.5-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkadm5clnt-mit12:amd64 libkadm5clnt-mit12 1.21.3-5 install ok installed libkadm5srv-mit12:amd64 libkadm5srv-mit12 1.21.3-5 install ok installed libkdb5-10t64:amd64 libkdb5-10t64 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5-dev:amd64 libkrb5-dev 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-6 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-dev:amd64 libldap-dev 2.6.10+dfsg-1 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2.1+b2 install ok installed liblsan0:amd64 liblsan0 15.2.0-1 install ok installed libltdl7:amd64 libltdl7 2.5.4-4 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmagick++-7.q16-5:amd64 libmagick++-7.q16-5 8:7.1.1.47+dfsg1-2 install ok installed libmagickcore-7.q16-10:amd64 libmagickcore-7.q16-10 8:7.1.1.47+dfsg1-2 install ok installed libmagickwand-7.q16-10:amd64 libmagickwand-7.q16-10 8:7.1.1.47+dfsg1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1.1 install ok installed libnghttp2-dev:amd64 libnghttp2-dev 1.64.0-1.1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libnghttp3-dev:amd64 libnghttp3-dev 1.8.0-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2.1 install ok installed libp11-kit-dev:amd64 libp11-kit-dev 0.25.5-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b2 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpkgconf3:amd64 libpkgconf3 1.8.1-4 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.50-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libpsl-dev:amd64 libpsl-dev 0.21.2-1.1+b1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libquadmath0:amd64 libquadmath0 15.2.0-1 install ok installed libraw23t64:amd64 libraw23t64 0.21.4-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp-dev:amd64 librtmp-dev 2.4+20151223.gitfa8646d.1-2+b5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.6-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssh2-1-dev:amd64 libssh2-1-dev 1.11.1-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl-dev:amd64 libssl-dev 3.5.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.3.0-5 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 258~rc2-2 install ok installed libsz2:amd64 libsz2 1.1.4-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtasn1-6-dev:amd64 libtasn1-6-dev 4.20.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.7.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1 install ok installed libtsan2:amd64 libtsan2 15.2.0-1 install ok installed libubsan1:amd64 libubsan1 15.2.0-1 install ok installed libudev1:amd64 libudev1 258~rc2-2 install ok installed libunbound8:amd64 libunbound8 1.22.0-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41.1-1 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.38-1 install ok installed littler littler 0.3.21-1 install ok installed login login 1:4.16.0-2+really2.41.1-1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed nettle-dev:amd64 nettle-dev 3.10.1-1 install ok installed openssl openssl 3.5.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed pkgconf:amd64 pkgconf 1.8.1-4 install ok installed pkgconf-bin pkgconf-bin 1.8.1-4 install ok installed procps procps 2:4.0.4-9 install ok installed r-base-core r-base-core 4.5.1-1 install ok installed r-bioc-annotate r-bioc-annotate 1.84.0+dfsg-2 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.68.0-2 install ok installed r-bioc-assorthead r-bioc-assorthead 1.0.1+ds-2 install ok installed r-bioc-beachmat r-bioc-beachmat 2.22.0+ds-2 install ok installed r-bioc-biobase r-bioc-biobase 2.66.0-2 install ok installed r-bioc-biocfilecache r-bioc-biocfilecache 2.14.0+dfsg-2 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.40.0-2 install ok installed r-bioc-biocsingular r-bioc-biocsingular 1.22.0+ds-2 install ok installed r-bioc-biostrings r-bioc-biostrings 2.74.1+dfsg-2 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.32.0+dfsg-2 install ok installed r-bioc-delayedmatrixstats r-bioc-delayedmatrixstats 1.28.1+ds-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.42.3+dfsg-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.13-2 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.58.0+dfsg-2 install ok installed r-bioc-graph r-bioc-graph 1.84.1-2 install ok installed r-bioc-gseabase r-bioc-gseabase 1.68.0+ds-2 install ok installed r-bioc-gsva r-bioc-gsva 2.0.5+ds-1 install ok installed r-bioc-hdf5array r-bioc-hdf5array 1.34.0-2 install ok installed r-bioc-iranges r-bioc-iranges 2.40.1-3 install ok installed r-bioc-keggrest r-bioc-keggrest 1.46.0+dfsg-3 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.18.1-1 install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.50.2+dfsg-1 install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.18.1+dfsg-1 install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 1.28.0+dfsg-2 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.6.0+dfsg-2 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-2 install ok installed r-bioc-scaledmatrix r-bioc-scaledmatrix 1.14.0+dfsg-2 install ok installed r-bioc-singlecellexperiment r-bioc-singlecellexperiment 1.28.1+ds-2 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.6.2+dfsg-2 install ok installed r-bioc-sparsematrixstats r-bioc-sparsematrixstats 1.18.0+dfsg-2 install ok installed r-bioc-spatialexperiment r-bioc-spatialexperiment 1.16.0+ds-2 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.36.0+dfsg-2 install ok installed r-bioc-ucsc.utils r-bioc-ucsc.utils 1.2.0+ds-2 install ok installed r-bioc-xvector r-bioc-xvector 0.46.0-2 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.52.0+dfsg-2 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-1 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bit r-cran-bit 4.6.0+dfsg-1 install ok installed r-cran-bit64 r-cran-bit64 4.6.0-1-4 install ok installed r-cran-blob r-cran-blob 1.2.4-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-1 install ok installed r-cran-cli r-cran-cli 3.6.4-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.2-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-1 install ok installed r-cran-curl r-cran-curl 6.2.1+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.2.3-1 install ok installed r-cran-dbplyr r-cran-dbplyr 2.5.0+dfsg-1 install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-4 install ok installed r-cran-fansi r-cran-fansi 1.0.6-2 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-1 install ok installed r-cran-filelock r-cran-filelock 1.0.3-1 install ok installed r-cran-formatr r-cran-formatr 1.14-2 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-glue r-cran-glue 1.8.0-1 install ok installed r-cran-httr r-cran-httr 1.4.7+dfsg-1 install ok installed r-cran-irlba r-cran-irlba 2.3.5.1-4 install ok installed r-cran-jsonlite r-cran-jsonlite 1.9.1+dfsg-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-lattice r-cran-lattice 0.22-7-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.21-1 install ok installed r-cran-magick r-cran-magick 2.8.5+dfsg-1+b1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-matrix r-cran-matrix 1.7-3-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-1 install ok installed r-cran-memoise r-cran-memoise 2.0.1-1 install ok installed r-cran-mime r-cran-mime 0.12-2 install ok installed r-cran-openssl r-cran-openssl 2.3.2+dfsg-1 install ok installed r-cran-pillar r-cran-pillar 1.10.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-plogr r-cran-plogr 0.2.0-3 install ok installed r-cran-png r-cran-png 0.1-8-1+b1 install ok installed r-cran-purrr r-cran-purrr 1.0.4-1 install ok installed r-cran-r6 r-cran-r6 2.6.1-1 install ok installed r-cran-rcpp r-cran-rcpp 1.1.0-1 install ok installed r-cran-rjson r-cran-rjson 0.2.23-1 install ok installed r-cran-rlang r-cran-rlang 1.1.5-3 install ok installed r-cran-rsqlite r-cran-rsqlite 2.3.9-1 install ok installed r-cran-rsvd r-cran-rsvd 1.0.5-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-stringi r-cran-stringi 1.8.4-1+b1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-sys r-cran-sys 3.4.3-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-3 install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1 install ok installed r-cran-xml r-cran-xml 3.99-0.18-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.25 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed unzip unzip 6.0-29 install ok installed util-linux util-linux 2.41.1-1 install ok installed x11-common x11-common 1:7.7+24 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-15 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 1m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gsva'] 1m11.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler nettle-dev openssl pkgconf pkgconf-bin procps r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 271 to remove and 0 not upgraded. After this operation, 673 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40169 files and directories currently installed.) Removing r-bioc-gsva (2.0.5+ds-1) ... Removing r-bioc-biocsingular (1.22.0+ds-2) ... Removing r-cran-rsvd (1.0.5-1) ... Removing r-cran-irlba (2.3.5.1-4) ... Removing r-bioc-spatialexperiment (1.16.0+ds-2) ... Removing r-cran-magick (2.8.5+dfsg-1+b1) ... Removing r-bioc-hdf5array (1.34.0-2) ... Removing r-bioc-singlecellexperiment (1.28.1+ds-2) ... Removing r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... Removing r-bioc-biocparallel (1.40.0-2) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-bioc-delayedmatrixstats (1.28.1+ds-1) ... Removing r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... Removing r-bioc-rhdf5 (2.50.2+dfsg-1) ... Removing r-bioc-rhdf5filters (1.18.1+dfsg-1) ... Removing r-bioc-rhdf5lib (1.28.0+dfsg-2) ... Removing libhdf5-dev (1.14.5+repack-3) ... Removing libcurl4-openssl-dev:amd64 (8.15.0-1) ... Removing libkrb5-dev:amd64 (1.21.3-5) ... Removing krb5-multidev:amd64 (1.21.3-5) ... Removing comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Removing libmagick++-7.q16-5:amd64 (8:7.1.1.47+dfsg1-2) ... Removing libmagickwand-7.q16-10:amd64 (8:7.1.1.47+dfsg1-2) ... Removing libmagickcore-7.q16-10:amd64 (8:7.1.1.47+dfsg1-2) ... Removing hdf5-helpers (1.14.5+repack-3) ... Removing imagemagick-7-common (8:7.1.1.47+dfsg1-2) ... Removing libaec-dev:amd64 (1.1.4-2) ... Removing libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-4.2) ... Removing libstdc++-14-dev:amd64 (14.3.0-5) ... Removing libgcc-14-dev:amd64 (14.3.0-5) ... Removing libasan8:amd64 (15.2.0-1) ... Removing liblqr-1-0:amd64 (0.4.2-2.1+b2) ... Removing libblosc1:amd64 (1.21.5+ds-1+b2) ... Removing libbrotli-dev:amd64 (1.1.0-2+b7) ... Removing r-bioc-genomicranges (1.58.0+dfsg-2) ... Removing librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing r-bioc-gseabase (1.68.0+ds-2) ... Removing libjpeg-dev:amd64 (1:2.1.5-4) ... Removing libjpeg62-turbo-dev:amd64 (1:2.1.5-4) ... Removing libgnutls28-dev:amd64 (3.8.10-2) ... Removing libkadm5srv-mit12:amd64 (1.21.3-5) ... Removing libkdb5-10t64:amd64 (1.21.3-5) ... Removing libkadm5clnt-mit12:amd64 (1.21.3-5) ... Removing libgnutls-dane0t64:amd64 (3.8.10-2) ... Removing libunbound8:amd64 (1.22.0-2) ... Removing libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libp11-kit-dev:amd64 (0.25.5-3) ... Removing libfftw3-double3:amd64 (3.3.10-2+b1) ... Removing nettle-dev:amd64 (3.10.1-1) ... Removing libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Removing libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Removing libgnutls-openssl27t64:amd64 (3.8.10-2) ... Removing libraw23t64:amd64 (0.21.4-2) ... Removing libgssrpc4t64:amd64 (1.21.3-5) ... Removing libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Removing r-bioc-beachmat (2.22.0+ds-2) ... Removing r-bioc-assorthead (1.0.1+ds-2) ... Removing libhnswlib-dev (0.8.0-1) ... Removing libhwasan0:amd64 (15.2.0-1) ... Removing r-bioc-biocfilecache (2.14.0+dfsg-2) ... Removing r-cran-dbplyr (2.5.0+dfsg-1) ... Removing r-cran-tidyr (1.3.1-1) ... Removing r-cran-stringr (1.5.1-1) ... Removing r-cran-stringi (1.8.4-1+b1) ... Removing libidn2-dev:amd64 (2.3.8-2) ... Removing libpsl-dev:amd64 (0.21.2-1.1+b1) ... Removing libitm1:amd64 (15.2.0-1) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing libldap-dev:amd64 (2.6.10+dfsg-1) ... Removing liblsan0:amd64 (15.2.0-1) ... Removing libltdl7:amd64 (2.5.4-4) ... Removing libnghttp2-dev:amd64 (1.64.0-1.1) ... Removing libnghttp3-dev:amd64 (1.8.0-1) ... Removing libopenjp2-7:amd64 (2.5.3-2.1) ... Removing pkgconf:amd64 (1.8.1-4) ... Removing pkgconf-bin (1.8.1-4) ... Removing libpkgconf3:amd64 (1.8.1-4) ... Removing libquadmath0:amd64 (15.2.0-1) ... Removing libwebpmux3:amd64 (1.5.0-0.1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1) ... Removing libsnappy1v5:amd64 (1.2.2-1) ... Removing libssh2-1-dev:amd64 (1.11.1-1) ... Removing libssl-dev:amd64 (3.5.2-1) ... Removing libtasn1-6-dev:amd64 (4.20.0-2) ... Removing libtsan2:amd64 (15.2.0-1) ... Removing libubsan1:amd64 (15.2.0-1) ... Removing r-bioc-annotate (1.84.0+dfsg-2) ... Removing r-cran-xml (3.99-0.18-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Removing libzstd-dev:amd64 (1.5.7+dfsg-1) ... Removing littler (0.3.21-1) ... Removing r-bioc-scaledmatrix (1.14.0+dfsg-2) ... Removing r-bioc-graph (1.84.1-2) ... Removing r-cran-dplyr (1.1.4-4) ... Removing r-cran-tidyselect (1.2.1+dfsg-1) ... Removing r-cran-tibble (3.2.1+dfsg-3) ... Removing r-cran-purrr (1.0.4-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-fansi (1.0.6-2) ... Removing r-cran-filelock (1.0.3-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-2) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-pillar (1.10.1+dfsg-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-rjson (0.2.23-1) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-withr (3.0.2+dfsg-1) ... Removing r-cran-xtable (1:1.8-4-2) ... Removing r-bioc-delayedarray (0.32.0+dfsg-2) ... Removing r-bioc-sparsearray (1.6.2+dfsg-2) ... Removing r-bioc-s4arrays (1.6.0+dfsg-2) ... Removing r-cran-abind (1.4-8-1) ... Removing r-cran-rcpp (1.1.0-1) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.4-2) ... Removing libaec0:amd64 (1.1.4-2) ... Removing r-bioc-annotationdbi (1.68.0-2) ... Removing r-bioc-keggrest (1.46.0+dfsg-3) ... Removing r-bioc-biostrings (2.74.1+dfsg-2) ... Removing r-bioc-xvector (0.46.0-2) ... Removing r-bioc-zlibbioc (1.52.0+dfsg-2) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libc6-dev:amd64 (2.41-12) ... Removing libc-dev-bin (2.41-12) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing r-cran-png (0.1-8-1+b1) ... Removing linux-libc-dev (6.12.38-1) ... Removing r-bioc-biobase (2.66.0-2) ... Removing r-bioc-matrixgenerics (1.18.1-1) ... Removing r-cran-rsqlite (2.3.9-1) ... Removing r-cran-bit64 (4.6.0-1-4) ... Removing r-cran-bit (4.6.0+dfsg-1) ... Removing r-cran-blob (1.2.4-1) ... Removing r-cran-memoise (2.0.1-1) ... Removing r-cran-cachem (1.1.0-1) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-cpp11 (0.5.2-1) ... Removing r-cran-crayon (1.5.3-1) ... Removing r-cran-dbi (1.2.3-1) ... Removing r-cran-fastmap (1.2.0-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.8.0-1) ... Removing r-cran-littler (0.3.21-1) ... Removing r-cran-matrixstats (1.5.0-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-plogr (0.2.0-3) ... Removing r-cran-rlang (1.1.5-3) ... Removing rpcsvc-proto (1.4.3-1) ... Removing r-cran-matrix (1.7-3-1) ... Removing r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Removing r-bioc-ucsc.utils (1.2.0+ds-2) ... Removing r-cran-httr (1.4.7+dfsg-1) ... Removing r-cran-curl (6.2.1+dfsg-1) ... Removing r-bioc-genomeinfodbdata (1.2.13-2) ... Removing r-bioc-iranges (2.40.1-3) ... Removing r-cran-openssl (2.3.2+dfsg-1) ... Removing r-cran-askpass (1.2.1-1) ... Removing r-cran-cli (3.6.4-1) ... Removing r-cran-jsonlite (1.9.1+dfsg-1) ... Removing r-cran-lattice (0.22-7-1) ... Removing r-cran-mime (0.12-2) ... Removing r-cran-r6 (2.6.1-1) ... Removing r-cran-sys (3.4.3-1) ... Removing r-bioc-s4vectors (0.44.0+dfsg-2) ... Removing r-bioc-biocgenerics (0.52.0-2) ... Removing r-base-core (4.5.1-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.56.3-1) ... Removing libpangoft2-1.0-0:amd64 (1.56.3-1) ... Removing libpango-1.0-0:amd64 (1.56.3-1) ... Removing fontconfig (2.15.0-2.3) ... Removing libtk8.6:amd64 (8.6.16-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ... Removing libglib2.0-0t64:amd64 (2.84.4-2) ... Removing libatomic1:amd64 (15.2.0-1) ... Removing liblapack3:amd64 (3.12.1-6) ... Removing libblas3:amd64 (3.12.1-6) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libcurl4t64:amd64 (8.15.0-1) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-4) ... Removing libtiff6:amd64 (4.7.0-3) ... Removing libdeflate0:amd64 (1.23-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.10-2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libffi8:amd64 (3.4.8-2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing libgfortran5:amd64 (15.2.0-1) ... Removing libgomp1:amd64 (15.2.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Removing libsm6:amd64 (2:1.2.6-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libicu76:amd64 (76.1-4) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libldap2:amd64 (2.6.10+dfsg-1) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing ucf (3.0052) ... Removing procps (2:4.0.4-9) ... Removing libncursesw6:amd64 (6.5+20250216-2) ... Removing libnghttp2-14:amd64 (1.64.0-1.1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libpaper-utils (2.2.5-0.3+b2) ... Removing libpaper2:amd64 (2.2.5-0.3+b2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libproc2-0:amd64 (2:4.0.4-9) ... Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ... Removing libtext-wrapi18n-perl (0.06-10) ... Removing libtext-charwidth-perl:amd64 (0.04-11+b4) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libunistring5:amd64 (1.3-2) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing openssl (3.5.2-1) ... Removing readline-common (8.2-6) ... Removing sensible-utils (0.0.25) ... Removing unzip (6.0-29) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-15) ... Removing libfontconfig1:amd64 (2.15.0-2.3) ... Removing fontconfig-config (2.15.0-2.3) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-3+b3) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libpng16-16t64:amd64 (1.6.50-1) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libheif1:amd64 (1.19.8-1) ... Removing libheif-plugin-libde265:amd64 (1.19.8-1) ... Removing libde265-0:amd64 (1.0.16-1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libheif-plugin-dav1d:amd64 (1.19.8-1) ... Removing libdav1d7:amd64 (1.5.1-1) ... Processing triggers for libc-bin (2.41-12) ... 1m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gsva'] 1m11.1s INFO: Running scripts post_remove 1m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_remove_exceptions'] 1m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_remove_exceptions'] 1m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 1m11.8s DUMP: (Reading database ... 5009 files and directories currently installed.) Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Purging configuration files for fontconfig (2.15.0-2.3) ... Purging configuration files for fontconfig-config (2.15.0-2.3) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove hdf5-helpers which isn't installed Purging configuration files for imagemagick-7-common (8:7.1.1.47+dfsg1-2) ... dpkg: warning: ignoring request to remove krb5-multidev which isn't installed dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libcurl4-openssl-dev which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libevent-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.4-2) ... dpkg: warning: ignoring request to remove libgmp-dev which isn't installed dpkg: warning: ignoring request to remove libgmpxx4ldbl which isn't installed dpkg: warning: ignoring request to remove libgnutls-dane0t64 which isn't installed dpkg: warning: ignoring request to remove libgnutls-openssl27t64 which isn't installed dpkg: warning: ignoring request to remove libgnutls28-dev which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libgssrpc4t64 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-dev which isn't installed dpkg: warning: ignoring request to remove libhdf5-fortran-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-cpp-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-fortran-310 which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhnswlib-dev which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu76 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libidn2-dev which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkadm5clnt-mit12 which isn't installed dpkg: warning: ignoring request to remove libkadm5srv-mit12 which isn't installed dpkg: warning: ignoring request to remove libkdb5-10t64 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5-dev which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-dev which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblqr-1-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmagick++-7.q16-5 which isn't installed dpkg: warning: ignoring request to remove libmagickcore-7.q16-10 which isn't installed dpkg: warning: ignoring request to remove libmagickwand-7.q16-10 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-dev which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-dev which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libp11-kit-dev which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b2) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpkgconf3 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl-dev which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraw23t64 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp-dev which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libssh2-1-dev which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libssl-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtext-charwidth-perl which isn't installed dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.6+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libunbound8 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed dpkg: warning: ignoring request to remove libzstd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove nettle-dev which isn't installed Purging configuration files for openssl (3.5.2-1) ... Purging configuration files for pkgconf:amd64 (1.8.1-4) ... dpkg: warning: ignoring request to remove pkgconf-bin which isn't installed Purging configuration files for procps (2:4.0.4-9) ... Purging configuration files for r-base-core (4.5.1-1) ... dpkg: warning: ignoring request to remove r-bioc-annotate which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-assorthead which isn't installed dpkg: warning: ignoring request to remove r-bioc-beachmat which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocfilecache which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocsingular which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedmatrixstats which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-graph which isn't installed dpkg: warning: ignoring request to remove r-bioc-gseabase which isn't installed dpkg: warning: ignoring request to remove r-bioc-hdf5array which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-keggrest which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhdf5 which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-scaledmatrix which isn't installed dpkg: warning: ignoring request to remove r-bioc-singlecellexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed dpkg: warning: ignoring request to remove r-bioc-sparsematrixstats which isn't installed dpkg: warning: ignoring request to remove r-bioc-spatialexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-ucsc.utils which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-cachem which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dbplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed dpkg: warning: ignoring request to remove r-cran-filelock which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-irlba which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magick which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plogr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rjson which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-rsvd which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0052) ... dpkg: warning: ignoring request to remove unzip which isn't installed Purging configuration files for x11-common (1:7.7+24) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 1m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--purge', 'r-bioc-gsva'] 1m11.8s DUMP: dpkg: warning: ignoring request to remove r-bioc-gsva which isn't installed 1m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--purge', 'r-bioc-gsva'] 1m11.8s INFO: Running scripts post_purge 1m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_purge_exceptions'] 1m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_purge_exceptions'] 1m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--purge', '--pending'] 1m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--purge', '--pending'] 1m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--remove', '--pending'] 1m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg', '--remove', '--pending'] 1m11.8s INFO: Running scripts post_test 1m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_test_exceptions'] 1m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'tmp/scripts/post_test_exceptions'] 1m11.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 1m12.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 1m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg-divert', '--list'] 1m12.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'dpkg-divert', '--list'] 1m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'clean'] 1m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz', 'apt-get', 'clean'] 1m12.3s DEBUG: Recording chroot state 1m13.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/shm'] 1m13.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/shm'] 1m13.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/console'] 1m13.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/console'] 1m13.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/ptmx'] 1m13.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/ptmx'] 1m13.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/pts'] 1m13.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/dev/pts'] 1m13.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/proc'] 1m13.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz/proc'] 1m13.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 1m13.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzfto9dmz'] 1m13.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzfto9dmz 1m13.9s INFO: PASS: Upgrading between Debian distributions. 1m13.9s INFO: PASS: All tests. 1m13.9s INFO: piuparts run ends. ret=0 End: 2025-08-13 23:27:24 GMT