Start: 2024-07-03 19:05:55 GMT [stable] Package: unicycler Version: 0.4.8+dfsg-2 Installed-Size: 3532 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.29), libgcc1 (>= 1:3.0), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), python3-setuptools, default-jre, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.13.1) Recommends: unicycler-data Description: hybrid assembly pipeline for bacterial genomes Homepage: https://github.com/rrwick/Unicycler Description-md5: 0f68c8d94a4296faee946873e441867a Section: science Priority: optional Filename: pool/main/u/unicycler/unicycler_0.4.8+dfsg-2_amd64.deb Size: 881684 MD5sum: 4e4d708f5ff3a66228701dd20fa8a151 SHA256: c739f77344ec5066f80edc0ddcab6df11dea7b50d02f9be7beab4ceed948ff84 [sid] Package: unicycler Version: 0.5.0+dfsg-1 Installed-Size: 3108 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3-setuptools, default-jre, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14) Recommends: unicycler-data Description: hybrid assembly pipeline for bacterial genomes Homepage: https://github.com/rrwick/Unicycler Description-md5: 0f68c8d94a4296faee946873e441867a Section: science Priority: optional Filename: pool/main/u/unicycler/unicycler_0.5.0+dfsg-1_amd64.deb Size: 863204 MD5sum: 1dde449b053205bb8019af217837cf69 SHA256: 3eca64bca0c5afe52dacdd22765e991c1b63b9cc67fa69524a53f4f99d91bf36 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt unicycler=0.5.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt unicycler=0.5.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-30-amd64 #1 SMP Debian 5.10.218-1 (2024-06-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpa6twn8fw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpa6twn8fw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpa6twn8fw/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'update'] 0m4.1s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [8067 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6236 kB] Fetched 14.4 MB in 3s (4768 kB/s) Reading package lists... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'update'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files bsdutils libblkid1 libc-bin libc6 libgnutls30 libmount1 libsmartcols1 libsystemd0 libudev1 libuuid1 mount util-linux 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7730 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 base-files amd64 11.1+deb11u10 [70.2 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 bsdutils amd64 1:2.36.1-8+deb11u2 [149 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 util-linux amd64 2.36.1-8+deb11u2 [1142 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libc6 amd64 2.31-13+deb11u10 [2825 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libc-bin amd64 2.31-13+deb11u10 [827 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libsystemd0 amd64 247.3-7+deb11u5 [376 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 mount amd64 2.36.1-8+deb11u2 [186 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libblkid1 amd64 2.36.1-8+deb11u2 [194 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libgnutls30 amd64 3.7.1-5+deb11u5 [1340 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libmount1 amd64 2.36.1-8+deb11u2 [212 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libsmartcols1 amd64 2.36.1-8+deb11u2 [158 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libudev1 amd64 247.3-7+deb11u5 [169 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libuuid1 amd64 2.36.1-8+deb11u2 [83.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7730 kB in 0s (59.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../base-files_11.1+deb11u10_amd64.deb ... Unpacking base-files (11.1+deb11u10) over (11.1+deb11u9) ... Setting up base-files (11.1+deb11u10) ... Installing new version of config file /etc/debian_version ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libc6_2.31-13+deb11u10_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u10) over (2.31-13+deb11u8) ... Setting up libc6:amd64 (2.31-13+deb11u10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libsystemd0_247.3-7+deb11u5_amd64.deb ... Unpacking libsystemd0:amd64 (247.3-7+deb11u5) over (247.3-7+deb11u4) ... Setting up libsystemd0:amd64 (247.3-7+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-8+deb11u2_amd64.deb ... Unpacking mount (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Preparing to unpack .../libblkid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libblkid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libblkid1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u5) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libmount1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libudev1_247.3-7+deb11u5_amd64.deb ... Unpacking libudev1:amd64 (247.3-7+deb11u5) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (247.3-7+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.36.1-8+deb11u2) ... Setting up mount (2.36.1-8+deb11u2) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s DUMP: e0568dca630aa17b9cacee75afdb778e - 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s INFO: Running scripts post_setup 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_dummy_users'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_dummy_users'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_forbid_home'] 0m8.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_forbid_home'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m8.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 0m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 0m9.1s INFO: Running scripts is_testable 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s INFO: Running scripts pre_test 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_test_root_password'] 0m9.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_test_root_password'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 0m9.4s DUMP: Package: unicycler Version: 0.4.8+dfsg-2 Installed-Size: 3532 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.29), libgcc1 (>= 1:3.0), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), python3-setuptools, default-jre, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.13.1) Recommends: unicycler-data Description-en: hybrid assembly pipeline for bacterial genomes Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly. Description-md5: 0f68c8d94a4296faee946873e441867a Homepage: https://github.com/rrwick/Unicycler Section: science Priority: optional Filename: pool/main/u/unicycler/unicycler_0.4.8+dfsg-2_amd64.deb Size: 881684 MD5sum: 4e4d708f5ff3a66228701dd20fa8a151 SHA256: c739f77344ec5066f80edc0ddcab6df11dea7b50d02f9be7beab4ceed948ff84 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 0m9.4s INFO: apt-cache knows about the following packages: unicycler 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy'] 0m9.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.10,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy', 'unicycler'] 0m9.5s DUMP: unicycler: Installed: (none) Candidate: 0.4.8+dfsg-2 Version table: 0.4.8+dfsg-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy', 'unicycler'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-y', 'install', 'unicycler'] 0m47.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ant ant-optional bamtools bcftools bowtie2 bwa ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbrotli1 libbsd0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libedlib0 libelf1 libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts3 libhtsjdk-java libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjpeg62-turbo libjsoncpp24 libjsoup-java libjsr305-java liblcms2-2 libldap-2.4-2 libllvm11 liblmdb0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa7.0.0 libsqlite3-0 libssh2-1 libssw0 libstax-ex-java libstreambuffer-java libtbb2 libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml-commons-resolver1.1-java libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 media-types miniasm ncbi-blast+ ncbi-data openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.32 pilon procps python3 python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3-yaml python3.9 python3.9-minimal racon readline-common samtools scala-library sensible-utils spades ucf unzip x11-common Suggested packages: ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java python3-numpy python3-matplotlib texlive-latex-recommended bowtie2-examples libaopalliance-java-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libel-api-java libcommons-io-java-doc libcommons-lang-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libdom4j-java-doc libmsv-java libxpp2-java libxpp3-java gdbm-l10n libasm-java libcglib-java picard-tools libjdom1-java libxom-java libjsoup-java-doc libjsr305-java-doc liblcms2-utils libmaven-file-management-java-doc libmaven-shared-io-java-doc libmaven-shared-utils-java-doc liblogback-java pciutils pcscd libplexus-classworlds-java-doc libplexus-sec-dispatcher-java-doc libplexus-utils2-java-doc lm-sensors testng libxml-commons-resolver1.1-java-doc libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.9-venv python3.9-doc binutils binfmt-support readline-doc cwltool zip Recommended packages: alsa-ucm-conf alsa-topology-conf dbus libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libjansi-java libgpm2 publicsuffix libsasl2-modules mesa-vulkan-drivers | vulkan-icd minimap libatk-wrapper-java-jni fonts-dejavu-extra netbase psmisc python3-numpy python3-pytest python3-simplejson python3-psutil rampler unicycler-data The following NEW packages will be installed: ant ant-optional bamtools bcftools bowtie2 bwa ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbrotli1 libbsd0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libedlib0 libelf1 libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts3 libhtsjdk-java libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjpeg62-turbo libjsoncpp24 libjsoup-java libjsr305-java liblcms2-2 libldap-2.4-2 libllvm11 liblmdb0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa7.0.0 libsqlite3-0 libssh2-1 libssw0 libstax-ex-java libstreambuffer-java libtbb2 libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml-commons-resolver1.1-java libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 media-types miniasm ncbi-blast+ ncbi-data openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.32 pilon procps python3 python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3-yaml python3.9 python3.9-minimal racon readline-common samtools scala-library sensible-utils spades ucf unicycler unzip x11-common 0 upgraded, 210 newly installed, 0 to remove and 0 not upgraded. Need to get 164 MB of archives. After this operation, 597 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u4 [1377 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.23+9-1~deb11u1 [38.2 MB] Get:51 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 ant all 1.10.9-4 [2118 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 ant-optional all 1.10.9-4 [381 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-9 [158 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 bamtools amd64 2.5.1+dfsg-9 [183 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2+deb11u1 [156 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u12 [344 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 bcftools amd64 1.11-1 [617 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 bowtie2 amd64 2.4.2-2+b3 [1342 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 bwa amd64 0.7.17-6+b1 [212 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libdrm2 amd64 2.4.104-1 [41.5 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libglapi-mesa amd64 20.3.5-1 [71.7 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libx11-xcb1 amd64 2:1.7.2-1+deb11u2 [204 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:94 http://deb.debian.org/debian bullseye/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libdrm-amdgpu1 amd64 2.4.104-1 [28.5 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libdrm-intel1 amd64 2.4.104-1 [71.8 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libdrm-nouveau2 amd64 2.4.104-1 [26.8 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libdrm-radeon1 amd64 2.4.104-1 [30.2 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libvulkan1 amd64 1.2.162.0-1 [103 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libgl1-mesa-dri amd64 20.3.5-1 [9633 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libglx-mesa0 amd64 20.3.5-1 [186 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre amd64 11.0.23+9-1~deb11u1 [194 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:118 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 java-wrappers all 0.3 [10.9 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get:122 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get:123 http://deb.debian.org/debian bullseye/main amd64 libargs4j-java all 2.33-1.1 [137 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:125 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:126 http://deb.debian.org/debian bullseye/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 libdom4j-java all 2.1.3-1 [310 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 libcommons-io-java all 2.8.0-1 [279 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-utils-java all 3.3.0-1+deb11u1 [149 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang3-java all 3.11-1 [550 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 libguava-java all 29.0-6 [2419 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libmaven-parent-java all 31-2 [5100 B] Get:139 http://deb.debian.org/debian bullseye/main amd64 libplexus-utils2-java all 3.3.0-1 [250 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 libwagon-provider-api-java all 3.3.4-1 [50.2 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libmaven-resolver-java all 1.4.2-3 [556 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libplexus-cipher-java all 1.8-2 [15.0 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 libplexus-component-annotations-java all 2.1.0-1 [7620 B] Get:145 http://deb.debian.org/debian bullseye/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 libslf4j-java all 1.7.30-1 [144 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libmaven3-core-java all 3.6.3-5 [1538 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 libcommons-compress-java all 1.20-1 [574 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 libplexus-io-java all 3.2.0-1.1 [65.0 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 libsnappy-jni amd64 1.1.8.3-1 [7152 B] Get:157 http://deb.debian.org/debian bullseye/main amd64 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 libxz-java all 1.8-2 [141 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 libhttpcore-java all 4.4.14-1 [631 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 libhttpclient-java all 4.5.13-2 [1233 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 libwagon-http-java all 3.3.4-1 [53.9 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10 [163 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libcommons-jexl2-java all 2.1.1-5 [256 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang-java all 2.6-9 [273 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 libedlib0 amd64 1.2.6-1 [15.7 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.7 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 libxsom-java all 2.3.0.1-10 [396 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 libhat-trie0 amd64 0.1.2-2 [11.8 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 librngom-java all 2.3.0.1-10 [288 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 libtxw2-java all 2.3.0.1-10 [134 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 libjaxb-java all 2.3.0.1-10 [1954 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk2 amd64 2.10.9-1 [59.2 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk-dev amd64 2.10.9-1 [104 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 libngs-java amd64 2.10.9-1 [80.4 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 libhtsjdk-java all 2.23.0+dfsg-2 [1607 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libnlopt0 amd64 2.7.0-4+b2 [172 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 libspoa7.0.0 amd64 4.0.7+ds-1+b1 [66.8 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 miniasm amd64 0.3+dfsg-2 [30.3 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:199 http://deb.debian.org/debian bullseye/main amd64 scala-library all 2.11.12-4 [9589 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 pilon all 1.23+dfsg-2 [500 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 python3-joblib all 0.17.0-4+deb11u1 [214 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 racon amd64 1.4.20-1 [3272 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 spades amd64 3.13.1+dfsg-2+b2 [4777 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 unicycler amd64 0.4.8+dfsg-2 [882 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 164 MB in 3s (57.1 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Unpacking python3-joblib (0.17.0-4+deb11u1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../186-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../187-python3-yaml_5.3.1-5_amd64.deb ... Unpacking python3-yaml (5.3.1-5) ... Selecting previously unselected package racon. Preparing to unpack .../188-racon_1.4.20-1_amd64.deb ... Unpacking racon (1.4.20-1) ... Selecting previously unselected package samtools. Preparing to unpack .../189-samtools_1.11-1_amd64.deb ... Unpacking samtools (1.11-1) ... Selecting previously unselected package spades. Preparing to unpack .../190-spades_3.13.1+dfsg-2+b2_amd64.deb ... Unpacking spades (3.13.1+dfsg-2+b2) ... Selecting previously unselected package unicycler. Preparing to unpack .../191-unicycler_0.4.8+dfsg-2_amd64.deb ... Unpacking unicycler (0.4.8+dfsg-2) ... Setting up media-types (4.0.0) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libdtd-parser-java (1.2-1) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up libslf4j-java (1.7.30-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libplexus-utils2-java (3.3.0-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libplexus-classworlds-java (2.6.0-1) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up java-common (0.72) ... Setting up libaopalliance-java (20070526-6) ... Setting up libcommons-cli-java (1.4-2) ... Setting up miniasm (0.3+dfsg-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... No schema files found: doing nothing. Setting up bwa (0.7.17-6+b1) ... Setting up libglvnd0:amd64 (1.3.2-1) ... Setting up unzip (6.0-26+deb11u1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libtbb2:amd64 (2020.3-1) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libngs-sdk2:amd64 (2.10.9-1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up scala-library (2.11.12-4) ... Setting up libnlopt0:amd64 (2.7.0-4+b2) ... Setting up libplexus-component-annotations-java (2.1.0-1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libplexus-cipher-java (1.8-2) ... Setting up libsnappy1v5:amd64 (1.1.8-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libasound2-data (1.2.4-1.1) ... Setting up libz3-4:amd64 (4.8.10-1) ... Setting up libhat-trie0:amd64 (0.1.2-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5+deb11u2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libspoa7.0.0:amd64 (4.0.7+ds-1+b1) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libxz-java (1.8-2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libedlib0 (1.2.6-1) ... Setting up libngs-sdk-dev:amd64 (2.10.9-1) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libactivation-java (1.2.0-2) ... Setting up libglapi-mesa:amd64 (20.3.5-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libvulkan1:amd64 (1.2.162.0-1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libgif7:amd64 (5.1.9-2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libjsoup-java (1.10.2-2) ... Setting up bamtools (2.5.1+dfsg-9) ... Setting up libasound2:amd64 (1.2.4-1.1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up libplexus-sec-dispatcher-java (1.4-4) ... Setting up libssh2-1:amd64 (1.9.0-2+deb11u1) ... Setting up libhttpcore-java (4.4.14-1) ... Setting up libngs-java:amd64 (2.10.9-1) ... Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up libssw0:amd64 (1.1-13) ... Setting up readline-common (8.1-1) ... Setting up libargs4j-java (2.33-1.1) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libdom4j-java (2.1.3-1) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libwagon-provider-api-java (3.3.4-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up java-wrappers (0.3) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libmaven-parent-java (31-2) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u12) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libcommons-lang-java (2.6-9) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libcommons-jexl2-java (2.1.1-5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libmaven-resolver-java (1.4.2-3) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up racon (1.4.20-1) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libcommons-lang3-java (3.11-1) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up librngom-java (2.3.0.1-10) ... Setting up libdrm2:amd64 (2.4.104-1) ... Setting up procps (2:3.3.17-5) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libxsom-java (2.3.0.1-10) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libdrm-nouveau2:amd64 (2.4.104-1) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.20-1) ... Setting up libcommons-io-java (2.8.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdrm-intel1:amd64 (2.4.104-1) ... Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ... Setting up bcftools (1.11-1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libguice-java (4.2.3-2) ... Setting up samtools (1.11-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up libhttpclient-java (4.5.13-2) ... Setting up libwagon-http-java (3.3.4-1) ... Setting up libmaven-shared-utils-java (3.3.0-1+deb11u1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up python3.9 (3.9.2-1) ... Setting up libplexus-io-java (3.2.0-1.1) ... Setting up libglx-mesa0:amd64 (20.3.5-1) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up libmaven3-core-java (3.6.3-5) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up python3 (3.9.2-3) ... Setting up bowtie2 (2.4.2-2+b3) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-joblib (0.17.0-4+deb11u1) ... Setting up python3-yaml (5.3.1-5) ... Setting up spades (3.13.1+dfsg-2+b2) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.23+9-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.23+9-1~deb11u1) ... Setting up default-jre (2:1.11-72) ... Setting up ant (1.10.9-4) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up ant-optional (1.10.9-4) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Setting up libtxw2-java (2.3.0.1-10) ... Setting up libjaxb-java (2.3.0.1-10) ... Setting up libhtsjdk-java (2.23.0+dfsg-2) ... Setting up pilon (1.23+dfsg-2) ... Setting up unicycler (0.4.8+dfsg-2) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-y', 'install', 'unicycler'] 0m47.4s INFO: Running scripts post_install 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_install_exceptions'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_install_exceptions'] 0m47.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 0m48.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 0m48.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpa6twn8fw to sid 0m48.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m48.5s INFO: Running scripts pre_distupgrade 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_exceptions'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'update'] 0m53.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9945 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7229 kB] Fetched 17.4 MB in 4s (4905 kB/s) Reading package lists... 0m53.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'update'] 0m53.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-yf', 'dist-upgrade'] 1m48.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: ant ant-optional libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdrm-nouveau2 libdtd-parser-java libedlib0 liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtbb2 libtxw2-java libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libasound2 libcups2 libcurl3-gnutls libdb5.3 libelf1 libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libhogweed6 libhts3 libnettle8 libpng16-16 libpsl5 libreadline8 libsemanage1 libssh2-1 libtirpc3 The following NEW packages will be installed: adwaita-icon-theme at-spi2-common fontconfig fonts-dejavu-mono gcc-14-base gtk-update-icon-cache hicolor-icon-theme libapt-pkg6.0t64 libasound2t64 libatk1.0-0t64 libbamtools2.5.2 libcairo2 libcap2 libcups2t64 libcurl3t64-gnutls libdatrie1 libdb5.3t64 libedlib1 libelf1t64 liberror-prone-java libext2fs2t64 libffi8 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libglib2.0-0t64 libgnutls30t64 libgtk2.0-0t64 libgtk2.0-common libhogweed6t64 libhts3t64 libhtscodecs2 libicu72 libjbig0 libjsoncpp25 libldap-2.5-0 liblerc4 libllvm17t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmjson-java libncbi-ngs3 libncbi-vdb3 libnettle8t64 libnghttp3-9 libngs-jni libngtcp2-16 libngtcp2-crypto-gnutls8 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libperl5.38t64 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3.12-minimal libpython3.12-stdlib libreadline8t64 librhino-java libsemanage2 libsepol2 libsharpyuv0 libssh2-1t64 libssl3t64 libthai-data libthai0 libtiff6 libtirpc3t64 libunistring5 libwebp7 libxcb-randr0 libxcb-render0 libxcomposite1 libxcursor1 libxinerama1 libxml2 libxrandr2 ncbi-vdb-data netbase openjdk-17-jre openjdk-17-jre-headless perl-modules-5.38 python3-packaging python3.12 python3.12-minimal shared-mime-info The following packages will be upgraded: adduser ant ant-optional apt bamtools base-files base-passwd bash bcftools bowtie2 bsdutils bwa ca-certificates ca-certificates-java coreutils dash debconf debian-archive-keyring debianutils default-jre default-jre-headless diffutils dpkg e2fsprogs findutils fontconfig-config fonts-dejavu-core gcc-10-base gcc-9-base gpgv grep gzip hostname init-system-helpers java-common java-wrappers libacl1 libaopalliance-java libapache-pom-java libargs4j-java libasound2-data libattr1 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcodemodel-java libcom-err2 libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcrypt1 libdbus-1-3 libdebconfclient0 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libexpat1 libfontconfig1 libfreetype6 libgcc-s1 libgcrypt20 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgmp10 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libguava-java libharfbuzz0b libhat-trie0 libhtsjdk-java libhttpclient-java libhttpcore-java libidn2-0 libjaxb-java libjpeg62-turbo libjsoup-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblmdb0 liblz4-1 liblzma5 libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmd0 libmount1 libncurses6 libncursesw6 libnghttp2-14 libngs-java libnlopt0 libnsl2 libnspr4 libnss3 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpciaccess0 libpcre2-8-0 libpcre3 libpcsclite1 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpython3-stdlib librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsensors-config libsensors5 libslf4j-java libsmartcols1 libsnappy-java libsnappy-jni libsnappy1v5 libspoa7.0.0 libsqlite3-0 libss2 libssw0 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libtxw2-java libudev1 libuuid1 libvulkan1 libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxhash0 libxz-java libyaml-0-2 libz3-4 libzstd1 login logsave lsb-base mawk media-types miniasm mount ncbi-blast+ ncbi-data ncurses-base ncurses-bin openjdk-11-jre openjdk-11-jre-headless openssl passwd perl perl-base pilon procps python3 python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3-yaml racon readline-common samtools scala-library sed sensible-utils spades sysvinit-utils tar tzdata ucf unicycler unzip util-linux x11-common zlib1g 242 upgraded, 90 newly installed, 20 to remove and 0 not upgraded. Need to get 278 MB of archives. After this operation, 537 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13.3 [72.3 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.38-13 [2775 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.38-13 [613 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.1.0-3 [44.9 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.1.0-3 [72.7 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.1-9 [166 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2+b2 [74.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.1-9 [197 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.1-9 [138 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.1-9 [34.9 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-4 [11.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.5-1 [17.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-4 [48.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-5 [2905 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-6 [72.8 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-6 [48.7 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-5 [4275 kB] Get:21 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-5 [236 kB] Get:22 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-5 [1643 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7 [67.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:26 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1 [87.9 kB] Get:27 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 256.1-2 [376 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7 [54.4 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7 [265 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-7 [140 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:35 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.15.2-3 [565 kB] Get:36 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.1-9 [1209 kB] Get:37 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.2-1 [254 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.6+dfsg-1 [303 kB] Get:39 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:40 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Get:41 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.09-2 [32.5 kB] Get:42 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.6 [4584 B] Get:43 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:44 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.19 [89.3 kB] Get:45 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2.1 [1492 kB] Get:46 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.1-9 [104 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.2.2-1 [2246 kB] Get:49 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:50 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-9 [93.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:52 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.10.0-2 [699 kB] Get:53 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:54 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:55 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2 [135 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.5-2 [344 kB] Get:59 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.5-2 [433 kB] Get:60 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.272 [10.0 kB] Get:62 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.4 [50.9 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.49-2 [79.9 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-3 [708 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.1.0-3 [713 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-1 [186 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.62.1-1 [75.5 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.3.0-2 [64.7 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.5.0-2 [126 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.5.0-2 [22.9 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.8.0-2 [451 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:77 http://deb.debian.org/debian sid/main amd64 bcftools amd64 1.20-2 [760 kB] Get:78 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.20-3 [653 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10-1 [303 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10-1 [334 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-5 [417 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.5-4 [1437 kB] Get:85 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.2-1 [136 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.2-1 [324 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.2-1 [80.0 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.2-1 [32.2 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:95 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.6 [1020 kB] Get:97 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-2 [61.4 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 256.1-2 [143 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:101 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2+b1 [278 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b3 [90.3 kB] Get:103 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.15.2-3 [994 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-2 [32.4 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:106 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:107 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.43-7 [216 kB] Get:108 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:110 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.6 [1398 kB] Get:111 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:112 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.5-2 [270 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libasound2-data all 1.2.12-1 [21.0 kB] Get:114 http://deb.debian.org/debian sid/main amd64 openjdk-11-jre amd64 11.0.24~7ea-1 [195 kB] Get:115 http://deb.debian.org/debian sid/main amd64 openjdk-11-jre-headless amd64 11.0.24~7ea-1 [38.3 MB] Get:116 http://deb.debian.org/debian sid/main amd64 libasound2t64 amd64 1.2.12-1 [369 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libcups2t64 amd64 2.4.10-1 [249 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 24.1.2-1 [8638 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:124 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.1-1 [22.7 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.1-1 [210 kB] Get:126 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.1-1 [583 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.80.3-1 [1485 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:131 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:136 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.1-9 [150 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.4-1 [811 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:139 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.4-1 [2136 kB] Get:140 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:141 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get:142 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get:143 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.2-1 [26.5 kB] Get:144 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.2-1 [27.5 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:146 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:147 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:148 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-4 [255 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.0-1 [902 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.4-1 [1948 kB] Get:151 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.4-1 [664 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.2-1 [9432 B] Get:153 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:154 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240622-1 [136 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:156 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:157 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:158 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.2-1 [1364 kB] Get:159 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:160 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get:164 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5 [758 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:167 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-1 [139 kB] Get:172 http://deb.debian.org/debian sid/main amd64 gtk-update-icon-cache amd64 3.24.42-1 [46.7 kB] Get:173 http://deb.debian.org/debian sid/main amd64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get:174 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 46.0-1 [614 kB] Get:175 http://deb.debian.org/debian sid/main amd64 ant-optional all 1.10.14-1 [455 kB] Get:176 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:177 http://deb.debian.org/debian sid/main amd64 java-common all 0.75 [6640 B] Get:178 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.35-1.1+b1 [109 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.101-1 [1336 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.2.3-1 [54.9 kB] Get:182 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre-headless amd64 17.0.12~6ea-1 [43.8 MB] Get:183 http://deb.debian.org/debian sid/main amd64 libgtk2.0-common all 2.24.33-4 [2661 kB] Get:184 http://deb.debian.org/debian sid/main amd64 at-spi2-common all 2.52.0-1 [166 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libatk1.0-0t64 amd64 2.52.0-1 [50.8 kB] Get:186 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:187 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:188 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:202 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [219 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [48.0 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [35.0 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libxcomposite1 amd64 1:0.4.5-1+b1 [14.9 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.2-1 [37.1 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libxdamage1 amd64 1:1.1.6-1+b1 [15.5 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3+b1 [16.0 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libxrandr2 amd64 2:1.5.4-1 [36.1 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libgtk2.0-0t64 amd64 2.24.33-4 [1816 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.121-2 [7972 B] Get:220 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.121-2 [38.3 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libvulkan1 amd64 1.3.283.0-1 [125 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.121-2 [22.0 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.121-2 [62.7 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.121-2 [22.3 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libllvm17t64 amd64 1:17.0.6-12+b1 [23.7 MB] Get:229 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.0-10 [34.7 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [107 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 24.1.2-1 [151 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 24.1.2-1 [36.6 kB] Get:234 http://deb.debian.org/debian sid/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [106 kB] Get:235 http://deb.debian.org/debian sid/main amd64 libxcb-glx0 amd64 1.17.0-2 [122 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libxcb-present0 amd64 1.17.0-2 [105 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libxcb-randr0 amd64 1.17.0-2 [116 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libxcb-sync1 amd64 1.17.0-2 [108 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [109 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get:241 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get:244 http://deb.debian.org/debian sid/main amd64 libgif7 amd64 5.2.2-1 [43.9 kB] Get:245 http://deb.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.3-1.1+b1 [25.9 kB] Get:246 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre amd64 17.0.12~6ea-1 [185 kB] Get:247 http://deb.debian.org/debian sid/main amd64 default-jre amd64 2:1.17-75 [1056 B] Get:248 http://deb.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.17-75 [3068 B] Get:249 http://deb.debian.org/debian sid/main amd64 ant all 1.10.14-1 [2162 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-5 [159 kB] Get:251 http://deb.debian.org/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:252 http://deb.debian.org/debian sid/main amd64 bamtools amd64 2.5.2+dfsg-5 [206 kB] Get:253 http://deb.debian.org/debian sid/main amd64 bowtie2 amd64 2.5.3-1 [1438 kB] Get:254 http://deb.debian.org/debian sid/main amd64 bwa amd64 0.7.17-7+b3 [212 kB] Get:255 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.1.0-3 [137 kB] Get:256 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-4 [36.7 kB] Get:257 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-6+b1 [29.2 kB] Get:258 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:259 http://deb.debian.org/debian sid/main amd64 java-wrappers all 0.4 [8916 B] Get:260 http://deb.debian.org/debian sid/main amd64 libaopalliance-java all 20070526-7 [8572 B] Get:261 http://deb.debian.org/debian sid/main amd64 libapache-pom-java all 29-2 [5276 B] Get:262 http://deb.debian.org/debian sid/main amd64 libargs4j-java all 2.33-2 [138 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.16.0-1 [297 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 1.25.0-1 [635 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libcommons-io-java all 2.16.1-1 [480 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:271 http://deb.debian.org/debian sid/main amd64 libcommons-lang-java all 2.6-10 [273 kB] Get:272 http://deb.debian.org/debian sid/main amd64 libcommons-lang3-java all 3.14.0-1 [621 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libdom4j-java all 2.1.4-1 [312 kB] Get:274 http://deb.debian.org/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.121-2 [19.5 kB] Get:275 http://deb.debian.org/debian sid/main amd64 libedlib1 amd64 1.2.7-5 [17.7 kB] Get:276 http://deb.debian.org/debian sid/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:277 http://deb.debian.org/debian sid/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:278 http://deb.debian.org/debian sid/main amd64 libhat-trie0 amd64 0.1.2-3 [11.8 kB] Get:279 http://deb.debian.org/debian sid/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get:280 http://deb.debian.org/debian sid/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get:281 http://deb.debian.org/debian sid/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get:282 http://deb.debian.org/debian sid/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get:283 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get:284 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.0.2+dfsg-2+b1 [1049 kB] Get:285 http://deb.debian.org/debian sid/main amd64 libncbi-ngs3 amd64 3.0.3+dfsg-7+b1 [156 kB] Get:286 http://deb.debian.org/debian sid/main amd64 libngs-jni amd64 3.0.3+dfsg-7+b1 [23.9 kB] Get:287 http://deb.debian.org/debian sid/main amd64 libngs-java amd64 3.0.3+dfsg-7+b1 [111 kB] Get:288 http://deb.debian.org/debian sid/main amd64 librhino-java all 1.7.14-2.1 [1357 kB] Get:289 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.1-1 [29.1 kB] Get:290 http://deb.debian.org/debian sid/main amd64 libsnappy-jni amd64 1.1.10.5-2 [6396 B] Get:291 http://deb.debian.org/debian sid/main amd64 libsnappy-java all 1.1.10.5-2 [87.5 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libhtsjdk-java all 4.1.0+dfsg-2 [1833 kB] Get:293 http://deb.debian.org/debian sid/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get:294 http://deb.debian.org/debian sid/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get:295 http://deb.debian.org/debian sid/main amd64 librngom-java all 2.3.0.1-10.1 [290 kB] Get:296 http://deb.debian.org/debian sid/main amd64 libxsom-java all 2.3.0.1-10.1 [400 kB] Get:297 http://deb.debian.org/debian sid/main amd64 libtxw2-java all 2.3.0.1-10.1 [134 kB] Get:298 http://deb.debian.org/debian sid/main amd64 libjaxb-java all 2.3.0.1-10.1 [1973 kB] Get:299 http://deb.debian.org/debian sid/main amd64 libjsoup-java all 1.15.3-1 [431 kB] Get:300 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b1 [44.8 kB] Get:301 http://deb.debian.org/debian sid/main amd64 libmaven-parent-java all 35-1 [6140 B] Get:302 http://deb.debian.org/debian sid/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get:303 http://deb.debian.org/debian sid/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get:304 http://deb.debian.org/debian sid/main amd64 libmaven-resolver-java all 1.6.3-1 [548 kB] Get:305 http://deb.debian.org/debian sid/main amd64 libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get:306 http://deb.debian.org/debian sid/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get:307 http://deb.debian.org/debian sid/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get:308 http://deb.debian.org/debian sid/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get:309 http://deb.debian.org/debian sid/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get:310 http://deb.debian.org/debian sid/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get:311 http://deb.debian.org/debian sid/main amd64 libmaven3-core-java all 3.8.7-2 [1573 kB] Get:312 http://deb.debian.org/debian sid/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get:313 http://deb.debian.org/debian sid/main amd64 libnlopt0 amd64 2.7.1-5+b3 [174 kB] Get:314 http://deb.debian.org/debian sid/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] Get:315 http://deb.debian.org/debian sid/main amd64 libxz-java all 1.9-1 [143 kB] Get:316 http://deb.debian.org/debian sid/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] Get:317 http://deb.debian.org/debian sid/main amd64 libspoa7.0.0 amd64 4.1.4-1 [70.3 kB] Get:318 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.1-1 [27.6 kB] Get:319 http://deb.debian.org/debian sid/main amd64 libssw0 amd64 1.1-14+b1 [21.2 kB] Get:320 http://deb.debian.org/debian sid/main amd64 libwagon-http-java all 3.5.3-1 [49.5 kB] Get:321 http://deb.debian.org/debian sid/main amd64 miniasm amd64 0.3+dfsg-4 [29.9 kB] Get:322 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-2 [3544 kB] Get:323 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4+b1 [12.5 MB] Get:324 http://deb.debian.org/debian sid/main amd64 scala-library all 2.11.12-5 [9588 kB] Get:325 http://deb.debian.org/debian sid/main amd64 pilon all 1.24-3 [497 kB] Get:326 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:327 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:328 http://deb.debian.org/debian sid/main amd64 python3-joblib all 1.3.2-2 [218 kB] Get:329 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get:330 http://deb.debian.org/debian sid/main amd64 racon amd64 1.5.0-3 [3115 kB] Get:331 http://deb.debian.org/debian sid/main amd64 spades amd64 3.15.5+dfsg-7 [9020 kB] Get:332 http://deb.debian.org/debian sid/main amd64 unicycler amd64 0.5.0+dfsg-1 [863 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 278 MB in 4s (74.6 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) over (2.1.27+dfsg-2.1+deb11u1) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libdb5.3. libperl5.32:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14674 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg1-0.8) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14668 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14675 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-5_amd64.deb ... Unpacking perl (5.38.2-5) over (5.32.1-4+deb11u3) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-5_all.deb ... Unpacking perl-modules-5.38 (5.38.2-5) ... dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested: libperl5.32:amd64 depends on libgdbm6 (>= 1.18-3). libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16088 files and directories currently installed.) Removing libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16082 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-6_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.23-6) ... dpkg: libgdbm-compat4:amd64: dependency problems, but removing anyway as you requested: libperl5.32:amd64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 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Setting up perl-base (5.38.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16619 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-4) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16618 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) over (1:1.2.11.dfsg-2+deb11u2) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16631 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-7_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-7) over (1.4.0-9+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.5.3-7) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/namespace.init ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16632 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.3-7_all.deb ... Unpacking libpam-runtime (1.5.3-7) over (1.4.0-9+deb11u1) ... Setting up libpam-runtime (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16631 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2) over (1.0.3-3) ... Setting up libmd0:amd64 (1.1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16631 files and directories currently installed.) Preparing to unpack .../libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) over (0.11.3-1+deb11u1) ... Setting up libbsd0:amd64 (0.12.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16632 files and directories currently installed.) Preparing to unpack .../login_1%3a4.15.2-3_amd64.deb ... Unpacking login (1:4.15.2-3) over (1:4.8.1-1) ... Setting up login (1:4.15.2-3) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16604 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.1-9_amd64.deb ... Unpacking util-linux (2.40.1-9) over (2.36.1-8+deb11u2) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16567 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.2-1_amd64.deb ... Unpacking liblzma5:amd64 (5.6.2-1) over (5.2.5-2.1~deb11u1) ... Setting up liblzma5:amd64 (5.6.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16567 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.6+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.6+dfsg-1) over (1.4.8+dfsg-2.1) ... Setting up libzstd1:amd64 (1.5.6+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16567 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1+deb11u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16568 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.6_amd64.deb ... Unpacking dpkg (1.22.6) over (1.20.13) ... Setting up dpkg (1.22.6) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16558 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.1.0) ... Preparing to unpack .../sysvinit-utils_3.09-2_amd64.deb ... Unpacking sysvinit-utils (3.09-2) over (2.96-7+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.09-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16557 files and directories currently installed.) Preparing to unpack .../x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) over (1:7.7+22) ... Preparing to unpack .../debianutils_5.19_amd64.deb ... Unpacking debianutils (5.19) over (4.11.2) ... Setting up debianutils (5.19) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16559 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2.1_amd64.deb ... Unpacking bash (5.2.21-2.1) over (5.1-2+deb11u1) ... Setting up bash (5.2.21-2.1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16560 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.1-9_amd64.deb ... Unpacking bsdutils (1:2.40.1-9) over (1:2.36.1-8+deb11u2) ... Setting up bsdutils (1:2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16561 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.2.1+dfsg-1+deb11u1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16562 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.2-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.2-1) ... Setting up libssl3t64:amd64 (3.2.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16577 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3.1_amd64.deb ... Unpacking coreutils (9.4-3.1) over (8.32-4+b1) ... Setting up coreutils (9.4-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16581 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-9_amd64.deb ... Unpacking dash (0.5.12-9) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.12-9) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16579 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.7-5) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16581 files and directories currently installed.) Preparing to unpack .../findutils_4.10.0-2_amd64.deb ... Unpacking findutils (4.10.0-2) over (4.8.0-1) ... Setting up findutils (4.10.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16579 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.6-1+deb11u1) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16581 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1.1_amd64.deb ... Unpacking gzip (1.12-1.1) over (1.10-4+deb11u1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16581 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23) ... Setting up hostname (3.23+nmu2) ... (Reading database ... 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Removing libnettle8:amd64 (3.7.3-1) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libgnutls30 (>= 3.6.14). libldap-2.4-2:amd64 depends on libgnutls30 (>= 3.7.0). libcups2:amd64 depends on libgnutls30 (>= 3.7.0). apt depends on libgnutls30 (>= 3.7.0). Removing libgnutls30:amd64 (3.7.1-5+deb11u5) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16646 files and directories currently installed.) Preparing to unpack .../libudev1_256.1-2_amd64.deb ... Unpacking libudev1:amd64 (256.1-2) over (247.3-7+deb11u5) ... Setting up libudev1:amd64 (256.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16647 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16648 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.1-1) ... Setting up libsemanage-common (3.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16648 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2+b1_amd64.deb ... Unpacking libsepol2:amd64 (3.5-2+b1) ... Setting up libsepol2:amd64 (3.5-2+b1) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16653 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b3) ... Setting up libsemanage2:amd64 (3.5-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16658 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.15.2-3_amd64.deb ... Unpacking passwd (1:4.15.2-3) over (1:4.8.1-1) ... Setting up passwd (1:4.15.2-3) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16696 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16691 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.2-2_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2) over (2.2.53-10) ... Setting up libacl1:amd64 (2.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16692 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-1_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-1) over (1:2.4.48-6) ... Setting up libattr1:amd64 (1:2.5.2-1) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16693 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137) over (3.118+deb11u1) ... Setting up adduser (3.137) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16655 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.43-7_amd64.deb ... Unpacking gpgv (2.2.43-7) over (2.2.27-2+deb11u2) ... Setting up gpgv (2.2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16655 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.4) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16655 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16655 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.6_amd64.deb ... Unpacking apt (2.9.6) over (2.2.4) ... Setting up apt (2.9.6) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16648 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.60) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16648 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5-2_all.deb ... Unpacking ncurses-base (6.5-2) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16648 files and directories currently installed.) Preparing to unpack .../libasound2-data_1.2.12-1_all.deb ... Unpacking libasound2-data (1.2.12-1) over (1.2.4-1.1) ... Preparing to unpack .../openjdk-11-jre_11.0.24~7ea-1_amd64.deb ... Unpacking openjdk-11-jre:amd64 (11.0.24~7ea-1) over (11.0.23+9-1~deb11u1) ... Preparing to unpack .../openjdk-11-jre-headless_11.0.24~7ea-1_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.24~7ea-1) over (11.0.23+9-1~deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16651 files and directories currently installed.) Removing libasound2:amd64 (1.2.4-1.1) ... Selecting previously unselected package libasound2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16643 files and directories currently installed.) Preparing to unpack .../libasound2t64_1.2.12-1_amd64.deb ... Unpacking libasound2t64:amd64 (1.2.12-1) ... Preparing to unpack .../libavahi-client3_0.8-13+b2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-13+b2) over (0.8-5+deb11u2) ... Preparing to unpack .../libavahi-common3_0.8-13+b2_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-13+b2) over (0.8-5+deb11u2) ... Preparing to unpack .../libavahi-common-data_0.8-13+b2_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-13+b2) over (0.8-5+deb11u2) ... Preparing to unpack .../libdbus-1-3_1.14.10-4+b1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.10-4+b1) over (1.12.28-0+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16653 files and directories currently installed.) Removing libcups2:amd64 (2.3.3op2-3+deb11u6) ... Selecting previously unselected package libcups2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16645 files and directories currently installed.) Preparing to unpack .../libcups2t64_2.4.10-1_amd64.deb ... Unpacking libcups2t64:amd64 (2.4.10-1) ... Preparing to unpack .../libgl1-mesa-dri_24.1.2-1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (24.1.2-1) over (20.3.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16653 files and directories currently installed.) Removing libelf1:amd64 (0.183-1) ... Selecting previously unselected package libelf1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16640 files and directories currently installed.) Preparing to unpack .../libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Preparing to unpack .../logsave_1.47.1-1_amd64.deb ... Unpacking logsave (1.47.1-1) over (1.46.2-2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.46.2-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16654 files and directories currently installed.) Removing libext2fs2:amd64 (1.46.2-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16647 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.1-1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.1-1) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up libext2fs2t64:amd64 (1.47.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16663 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.1-1_amd64.deb ... Unpacking e2fsprogs (1.47.1-1) over (1.46.2-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libharfbuzz0b_8.3.0-2+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (8.3.0-2+b1) over (2.7.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16661 files and directories currently installed.) Removing libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... Selecting previously unselected package libglib2.0-0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16635 files and directories currently installed.) Preparing to unpack .../libglib2.0-0t64_2.80.3-1_amd64.deb ... libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:amd64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... removed '/var/lib/dpkg/info/libglib2.0-0:amd64.postrm' Unpacking libglib2.0-0t64:amd64 (2.80.3-1) ... Preparing to unpack .../libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) over (2.10.4+dfsg-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16661 files and directories currently installed.) Removing libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libpng16-16t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16650 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Preparing to unpack .../readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) over (8.1-1) ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16662 files and directories currently installed.) Removing libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16649 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Preparing to unpack .../libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) over (1.3.1-1+deb11u1) ... Preparing to unpack .../libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) over (1.3.0-2) ... dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libtirpc3 (>= 1.0.2). 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Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up libplexus-utils2-java (3.4.2-1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libplexus-classworlds-java (2.7.0-1) ... Setting up libxcb1:amd64 (1.17.0-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up libgdbm6t64:amd64 (1.23-6) ... Setting up hicolor-icon-theme (0.18-1) ... Setting up libmbedcrypto7t64:amd64 (2.28.8-1) ... Setting up java-common (0.75) ... Setting up libdatrie1:amd64 (0.2.13-3) ... Setting up libgdbm-compat4t64:amd64 (1.23-6) ... Setting up libaopalliance-java (20070526-7) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up miniasm (0.3+dfsg-4) ... Setting up libxcb-render0:amd64 (1.17.0-2) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up bwa (0.7.17-7+b3) ... Setting up libglvnd0:amd64 (1.7.0-1+b1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libmjson-java (1.4.0-3) ... Setting up libxcb-glx0:amd64 (1.17.0-2) ... Setting up unzip (6.0-28) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libedit2:amd64 (3.1-20240517-1) ... Setting up libsqlite3-0:amd64 (3.46.0-1) ... Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Setting up x11-common (1:7.7+23) ... Installing new version of config file /etc/X11/Xsession ... Installing new version of config file /etc/X11/Xsession.d/20x11-common_process-args ... Installing new version of config file /etc/X11/Xsession.d/90x11-common_ssh-agent ... Installing new version of config file /etc/init.d/x11-common ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.62.1-1) ... Setting up libdeflate0:amd64 (1.20-1) ... Setting up scala-library (2.11.12-5) ... Setting up libnlopt0:amd64 (2.7.1-5+b3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2) ... Setting up libgomp1:amd64 (14.1.0-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up libsnappy1v5:amd64 (1.2.1-1) ... Setting up libkrb5support0:amd64 (1.21.2-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 3 19:07:28 UTC 2024. Universal Time is now: Wed Jul 3 19:07:28 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2) ... Setting up libasound2-data (1.2.12-1) ... Setting up gcc-10-base:amd64 (10.5.0-4) ... Setting up librhino-java (1.7.14-2.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.80.3-1) ... No schema files found: doing nothing. Setting up libhat-trie0:amd64 (0.1.2-3) ... Setting up libasound2t64:amd64 (1.2.12-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libnspr4:amd64 (2:4.35-1.1+b1) ... Setting up libxcb-sync1:amd64 (1.17.0-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-13+b2) ... Setting up libncurses6:amd64 (6.5-2) ... Setting up libdbus-1-3:amd64 (1.14.10-4+b1) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up perl-modules-5.38 (5.38.2-5) ... Setting up libproc2-0:amd64 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libspoa7.0.0:amd64 (4.1.4-1) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libxz-java (1.9-1) ... Setting up libss2:amd64 (1.47.1-1) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up fonts-dejavu-core (2.37-8) ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-lgc-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/57-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/58-dejavu-lgc-sans-mono.conf ... Setting up libpcsclite1:amd64 (2.2.3-1) ... Setting up libsensors5:amd64 (1:3.6.0-10) ... Setting up libncursesw6:amd64 (6.5-2) ... Setting up libk5crypto3:amd64 (1.21.2-1) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-5) ... Setting up libglapi-mesa:amd64 (24.1.2-1) ... Setting up logsave (1.47.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libvulkan1:amd64 (1.3.283.0-1) ... Setting up libnghttp3-9:amd64 (1.3.0-2) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... Setting up libgif7:amd64 (5.2.2-1) ... Setting up libedlib1:amd64 (1.2.7-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... Setting up librngom-java (2.3.0.1-10.1) ... Setting up mount (2.40.1-9) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:amd64 (1.3-1+b1) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.52.0-1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up bamtools (2.5.2+dfsg-5) ... Setting up libxcb-randr0:amd64 (1.17.0-2) ... Setting up procps (2:4.0.4-4) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Installing new version of config file /etc/sysctl.d/README.sysctl ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.5.0-2) ... Setting up libgtk2.0-common (2.24.33-4) ... Setting up mawk (1.3.4.20240622-1) ... Setting up libkrb5-3:amd64 (1.21.2-1) ... Setting up libperl5.38t64:amd64 (5.38.2-5) ... Setting up libssh2-1t64:amd64 (1.11.0-5) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libxsom-java (2.3.0.1-10.1) ... Setting up openssl (3.2.2-1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libdrm-common (2.4.121-2) ... Setting up libsnappy-jni (1.1.10.5-2) ... Setting up libxcomposite1:amd64 (1:0.4.5-1+b1) ... Setting up libssw0:amd64 (1.1-14+b1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up libargs4j-java (2.33-2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.5.0-2) ... Setting up gcc-9-base:amd64 (9.5.0-6+b1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1+b1) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libxdamage1:amd64 (1:1.1.6-1+b1) ... Setting up java-wrappers (0.4) ... Setting up libatk1.0-0t64:amd64 (2.52.0-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up fontconfig-config (2.15.0-1.1) ... Installing new version of config file /etc/fonts/conf.d/README ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libmaven-parent-java (35-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-13+b2) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up e2fsprogs (1.47.1-1) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up libnss3:amd64 (2:3.101-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 37 added, 20 removed; done. Setting up perl (5.38.2-5) ... Setting up libllvm17t64:amd64 (1:17.0.6-12+b1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b1) ... Setting up shared-mime-info (2.4-5) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b1) ... Setting up racon (1.5.0-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.2-1) ... Setting up libxrandr2:amd64 (2:1.5.4-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libcommons-lang3-java (3.14.0-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libdrm2:amd64 (2.4.121-2) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... Setting up libsnappy-java (1.1.10.5-2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up ca-certificates-java (20240118) ... Installing new version of config file /etc/ca-certificates/update.d/jks-keystore ... Removing debian:chambers_of_commerce_root_-_2008.pem Removing debian:cybertrust_global_root.pem Removing debian:dst_root_ca_x3.pem Removing debian:e-tugra_certification_authority.pem Removing debian:ec-acc.pem Removing debian:geotrust_primary_certification_authority_-_g2.pem Removing debian:global_chambersign_root_-_2008.pem Removing debian:globalsign_root_ca_-_r2.pem Removing debian:hellenic_academic_and_research_institutions_rootca_2011.pem Removing debian:hongkong_post_root_ca_1.pem Removing debian:network_solutions_certificate_authority.pem Removing debian:quovadis_root_ca.pem Removing debian:sonera_class_2_root_ca.pem Removing debian:staat_der_nederlanden_ev_root_ca.pem Removing debian:staat_der_nederlanden_root_ca_-_g3.pem Removing debian:trustcor_eca-1.pem Removing debian:trustcor_rootcert_ca-1.pem Removing debian:trustcor_rootcert_ca-2.pem Removing debian:trustis_fps_root_ca.pem Removing debian:verisign_universal_root_certification_authority.pem Replacing debian:ACCVRAIZ1.pem Replacing debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Replacing debian:Actalis_Authentication_Root_CA.pem Replacing debian:AffirmTrust_Commercial.pem Replacing debian:AffirmTrust_Networking.pem Replacing debian:AffirmTrust_Premium.pem Replacing debian:AffirmTrust_Premium_ECC.pem Replacing debian:Amazon_Root_CA_1.pem Replacing debian:Amazon_Root_CA_2.pem Replacing debian:Amazon_Root_CA_3.pem Replacing debian:Amazon_Root_CA_4.pem Replacing debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Replacing debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Replacing debian:Baltimore_CyberTrust_Root.pem Replacing debian:Buypass_Class_2_Root_CA.pem Replacing debian:Buypass_Class_3_Root_CA.pem Replacing debian:CA_Disig_Root_R2.pem Replacing debian:CFCA_EV_ROOT.pem Replacing debian:COMODO_Certification_Authority.pem Replacing debian:COMODO_ECC_Certification_Authority.pem Replacing debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Replacing debian:Certigna.pem Replacing debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Replacing debian:Certum_Trusted_Network_CA.pem Replacing debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Replacing debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Replacing debian:D-TRUST_Root_Class_3_CA_2_2009.pem Replacing debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Replacing debian:DigiCert_Assured_ID_Root_CA.pem Replacing debian:DigiCert_Assured_ID_Root_G2.pem Replacing debian:DigiCert_Assured_ID_Root_G3.pem Replacing debian:DigiCert_Global_Root_CA.pem Replacing debian:DigiCert_Global_Root_G2.pem Replacing debian:DigiCert_Global_Root_G3.pem Replacing debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Replacing debian:DigiCert_Trusted_Root_G4.pem Replacing debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Replacing debian:Entrust_Root_Certification_Authority.pem Replacing debian:Entrust_Root_Certification_Authority_-_EC1.pem Replacing debian:Entrust_Root_Certification_Authority_-_G2.pem Replacing debian:Entrust_Root_Certification_Authority_-_G4.pem Replacing debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Replacing debian:GTS_Root_R1.pem Replacing debian:GTS_Root_R2.pem Replacing debian:GTS_Root_R3.pem Replacing debian:GTS_Root_R4.pem Replacing debian:GlobalSign_ECC_Root_CA_-_R4.pem Replacing debian:GlobalSign_ECC_Root_CA_-_R5.pem Replacing debian:GlobalSign_Root_CA.pem Replacing debian:GlobalSign_Root_CA_-_R3.pem Replacing debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Replacing debian:Go_Daddy_Class_2_CA.pem Replacing debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Replacing debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Replacing debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Replacing debian:Hongkong_Post_Root_CA_3.pem Replacing debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Replacing debian:IdenTrust_Commercial_Root_CA_1.pem Replacing debian:IdenTrust_Public_Sector_Root_CA_1.pem Replacing debian:Izenpe.com.pem Replacing debian:Microsec_e-Szigno_Root_CA_2009.pem Replacing debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Replacing debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Replacing debian:NAVER_Global_Root_Certification_Authority.pem Replacing debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Replacing debian:OISTE_WISeKey_Global_Root_GB_CA.pem Replacing debian:OISTE_WISeKey_Global_Root_GC_CA.pem Replacing debian:QuoVadis_Root_CA_1_G3.pem Replacing debian:QuoVadis_Root_CA_2.pem Replacing debian:QuoVadis_Root_CA_2_G3.pem Replacing debian:QuoVadis_Root_CA_3.pem Replacing debian:QuoVadis_Root_CA_3_G3.pem Replacing debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Replacing debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Replacing debian:SSL.com_Root_Certification_Authority_ECC.pem Replacing debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Replacing debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Replacing debian:SecureSign_RootCA11.pem Replacing debian:SecureTrust_CA.pem Replacing debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Replacing debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Replacing debian:Security_Communication_Root_CA.pem Replacing debian:Starfield_Class_2_CA.pem Replacing debian:Starfield_Root_Certificate_Authority_-_G2.pem Replacing debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Replacing debian:SwissSign_Gold_CA_-_G2.pem Replacing debian:SwissSign_Silver_CA_-_G2.pem Replacing debian:T-TeleSec_GlobalRoot_Class_2.pem Replacing debian:T-TeleSec_GlobalRoot_Class_3.pem Replacing debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Replacing debian:TWCA_Global_Root_CA.pem Replacing debian:TWCA_Root_Certification_Authority.pem Replacing debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Replacing debian:Trustwave_Global_Certification_Authority.pem Replacing debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Replacing debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Replacing debian:UCA_Extended_Validation_Root.pem Replacing debian:UCA_Global_G2_Root.pem Replacing debian:USERTrust_ECC_Certification_Authority.pem Replacing debian:USERTrust_RSA_Certification_Authority.pem Replacing debian:XRamp_Global_CA_Root.pem Replacing debian:certSIGN_ROOT_CA.pem Replacing debian:certSIGN_Root_CA_G2.pem Replacing debian:e-Szigno_Root_CA_2017.pem Replacing debian:ePKI_Root_Certification_Authority.pem Replacing debian:emSign_ECC_Root_CA_-_C3.pem Replacing debian:emSign_ECC_Root_CA_-_G3.pem Replacing debian:emSign_Root_CA_-_C1.pem Replacing debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up libcommons-codec-java (1.16.0-1) ... Setting up libtxw2-java (2.3.0.1-10.1) ... Setting up libavahi-client3:amd64 (0.8-13+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.121-2) ... Setting up libjaxb-java (2.3.0.1-10.1) ... Setting up gtk-update-icon-cache (3.24.42-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.121-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.4-1) ... Setting up libxi6:amd64 (2:1.8.1-1) ... Setting up libcommons-compress-java (1.25.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up libcommons-io-java (2.16.1-1) ... Setting up libdrm-radeon1:amd64 (2.4.121-2) ... Setting up libxtst6:amd64 (2:1.2.3-1.1+b1) ... Setting up python3.12 (3.12.4-1) ... Setting up libxcursor1:amd64 (1:1.2.2-1) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libdrm-intel1:amd64 (2.4.121-2) ... Setting up openjdk-11-jre-headless:amd64 (11.0.24~7ea-1) ... Installing new version of config file /etc/java-11-openjdk/security/java.security ... Setting up libgl1-mesa-dri:amd64 (24.1.2-1) ... Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2+b1) ... Setting up libcurl3t64-gnutls:amd64 (8.8.0-2) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up openjdk-17-jre-headless:amd64 (17.0.12~6ea-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libhttpclient-java (4.5.14-1) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libhts3t64:amd64 (1.20+ds-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libcups2t64:amd64 (2.4.10-1) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libpython3-stdlib:amd64 (3.12.2-1) ... Setting up libncbi-ngs3:amd64 (3.0.3+dfsg-7+b1) ... Setting up libngs-jni:amd64 (3.0.3+dfsg-7+b1) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libglx-mesa0:amd64 (24.1.2-1) ... Setting up libglx0:amd64 (1.7.0-1+b1) ... Setting up libmaven3-core-java (3.8.7-2) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up bcftools (1.20-2) ... Setting up python3 (3.12.2-1) ... /usr/share/spades/spades_pipeline/support.py:531: SyntaxWarning: invalid escape sequence '\d' return [atoi(c) for c in re.split("(\d+)", text)] Setting up samtools (1.20-3) ... Setting up bowtie2 (2.5.3-1) ... Setting up ncbi-blast+ (2.12.0+ds-4+b1) ... Setting up python3-packaging (24.0-1) ... Setting up libgl1:amd64 (1.7.0-1+b1) ... Setting up libgtk2.0-0t64:amd64 (2.24.33-4) ... Setting up libplexus-archiver-java (4.6.1-1) ... Setting up libngs-java:amd64 (3.0.3+dfsg-7+b1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up libhtsjdk-java (4.1.0+dfsg-2) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-setuptools (68.1.2-2) ... Setting up python3-joblib (1.3.2-2) ... Setting up python3-yaml (6.0.1-2) ... Setting up spades (3.15.5+dfsg-7) ... Setting up libguava-java (32.0.1-1) ... Setting up liberror-prone-java (2.18.0-1) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for debianutils (5.19) ... Processing triggers for ca-certificates-java (20240118) ... done. Setting up openjdk-17-jre:amd64 (17.0.12~6ea-1) ... Setting up openjdk-11-jre:amd64 (11.0.24~7ea-1) ... Setting up ant (1.10.14-1) ... Setting up default-jre-headless (2:1.17-75) ... Setting up default-jre (2:1.17-75) ... Setting up ant-optional (1.10.14-1) ... Setting up pilon (1.24-3) ... Setting up unicycler (0.5.0+dfsg-1) ... /usr/lib/python3/dist-packages/unicycler/bridge_common.py:43: SyntaxWarning: invalid escape sequence '\l' """ /usr/lib/python3/dist-packages/unicycler/bridge_long_read.py:619: SyntaxWarning: invalid escape sequence '\c' """ /usr/lib/python3/dist-packages/unicycler/log.py:194: SyntaxWarning: invalid escape sequence '\[' return re.sub('\033\[2m', '', text) /usr/lib/python3/dist-packages/unicycler/misc.py:641: SyntaxWarning: invalid escape sequence '\[' row_str = re.sub('\033\[4m', '', row_str) /usr/lib/python3/dist-packages/unicycler/misc.py:743: SyntaxWarning: invalid escape sequence '\ ' bold_red(" \ \___\n") + /usr/lib/python3/dist-packages/unicycler/misc.py:744: SyntaxWarning: invalid escape sequence '\ ' bold_red(" \ ___\\\n") + /usr/lib/python3/dist-packages/unicycler/misc.py:753: SyntaxWarning: invalid escape sequence '\ ' bold_yellow("| | | || '_ \ | | / __|| | | | / __|| | / _ \| '__|\n") + /usr/lib/python3/dist-packages/unicycler/misc.py:754: SyntaxWarning: invalid escape sequence '\_' bold_red("\\\\ \_ // ") + /usr/lib/python3/dist-packages/unicycler/misc.py:757: SyntaxWarning: invalid escape sequence '\_' bold_yellow("\____/ |_| |_||_| \___| \__, | \___||_| \___||_|\n") + Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 1m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-yf', 'dist-upgrade'] 1m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m49.7s DUMP: ca55a3b35359436cc77412a7c91c8797 - 1m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 1m50.0s DUMP: Package: unicycler Version: 0.5.0+dfsg-1 Installed-Size: 3108 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3-setuptools, default-jre, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14) Recommends: unicycler-data Description-en: hybrid assembly pipeline for bacterial genomes Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly. Description-md5: 0f68c8d94a4296faee946873e441867a Homepage: https://github.com/rrwick/Unicycler Section: science Priority: optional Filename: pool/main/u/unicycler/unicycler_0.5.0+dfsg-1_amd64.deb Size: 863204 MD5sum: 1dde449b053205bb8019af217837cf69 SHA256: 3eca64bca0c5afe52dacdd22765e991c1b63b9cc67fa69524a53f4f99d91bf36 1m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 1m50.0s INFO: apt-cache knows about the following packages: unicycler 1m50.0s INFO: Running scripts pre_install 1m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_database-server'] 1m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_database-server'] 1m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_exceptions'] 1m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_exceptions'] 1m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_extras'] 1m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_extras'] 1m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy'] 1m50.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy'] 1m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy', 'unicycler'] 1m50.1s DUMP: unicycler: Installed: 0.5.0+dfsg-1 Candidate: 0.5.0+dfsg-1 Version table: *** 0.5.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy', 'unicycler'] 1m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-y', 'install', 'unicycler'] 1m50.8s DUMP: Reading package lists... Building dependency tree... Reading state information... unicycler is already the newest version (0.5.0+dfsg-1). The following packages were automatically installed and are no longer required: ant ant-optional libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdrm-nouveau2 libdtd-parser-java libedlib0 liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtbb2 libtxw2-java libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-y', 'install', 'unicycler'] 1m50.8s INFO: Running scripts post_install 1m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_install_exceptions'] 1m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_install_exceptions'] 1m50.8s INFO: Running scripts post_distupgrade 1m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_exceptions'] 1m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_exceptions'] 1m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_zz_backports'] 1m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_distupgrade_zz_backports'] 1m50.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 1m52.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 1m52.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 1m53.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 1m53.6s INFO: Running scripts pre_install 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_database-server'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_database-server'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_exceptions'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_exceptions'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_extras'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_extras'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy'] 1m53.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy', 'unicycler'] 1m53.7s DUMP: unicycler: Installed: 0.5.0+dfsg-1 Candidate: 0.5.0+dfsg-1 Version table: *** 0.5.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m53.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-cache', 'policy', 'unicycler'] 1m53.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-y', 'install', 'unicycler=0.5.0+dfsg-1'] 1m54.2s DUMP: Reading package lists... Building dependency tree... Reading state information... unicycler is already the newest version (0.5.0+dfsg-1). The following packages were automatically installed and are no longer required: ant ant-optional libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdrm-nouveau2 libdtd-parser-java libedlib0 liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtbb2 libtxw2-java libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', '-y', 'install', 'unicycler=0.5.0+dfsg-1'] 1m54.2s INFO: Running scripts post_install 1m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_install_exceptions'] 1m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_install_exceptions'] 1m54.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 1m55.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 1m55.6s INFO: /lib converted to /usr/lib by /usr merge 1m55.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m57.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', '-ac', '--ignore-obsolete'] 2m2.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', '-ac', '--ignore-obsolete'] 2m2.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m2.2s DUMP: 0.15.6 2m2.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m2.2s INFO: Running adequate version 0.15.6 now. 2m2.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'unicycler'] 2m2.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'unicycler'] 2m2.3s INFO: Running scripts pre_remove 2m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_exceptions'] 2m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/pre_remove_exceptions'] 2m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m8.7s DUMP: install ok installed adduser adduser 3.137 install ok installed adwaita-icon-theme adwaita-icon-theme 46.0-1 install ok installed ant ant 1.10.14-1 install ok installed ant-optional ant-optional 1.10.14-1 install ok installed apt apt 2.9.6 install ok installed at-spi2-common at-spi2-common 2.52.0-1 install ok installed bamtools bamtools 2.5.2+dfsg-5 install ok installed base-files base-files 13.3 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.21-2.1 install ok installed bcftools bcftools 1.20-2 install ok installed bowtie2 bowtie2 2.5.3-1 install ok installed bsdutils bsdutils 1:2.40.1-9 install ok installed bwa bwa 0.7.17-7+b3 install ok installed ca-certificates ca-certificates 20240203 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.19 install ok installed default-jre default-jre 2:1.17-75 install ok installed default-jre-headless default-jre-headless 2:1.17-75 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-2 install ok installed fontconfig fontconfig 2.15.0-1.1 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-4 install ok installed gcc-14-base:amd64 gcc-14-base 14.1.0-3 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-6+b1 install ok installed gpgv gpgv 2.2.43-7 install ok installed grep grep 3.11-4 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.42-1 install ok installed gzip gzip 1.12-1.1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.18-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed java-common java-common 0.75 install ok installed java-wrappers java-wrappers 0.4 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libactivation-java libactivation-java 1.2.0-2 install ok installed libaopalliance-java libaopalliance-java 20070526-7 install ok installed libapache-pom-java libapache-pom-java 29-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.6 install ok installed libargs4j-java libargs4j-java 2.33-2 install ok installed libasound2-data libasound2-data 1.2.12-1 install ok installed libasound2t64:amd64 libasound2t64 1.2.12-1 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatk1.0-0t64:amd64 libatk1.0-0t64 2.52.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-13+b2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-13+b2 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-13+b2 install ok installed libbamtools2.5.1:amd64 libbamtools2.5.1 2.5.1+dfsg-9 install ok installed libbamtools2.5.2:amd64 libbamtools2.5.2 2.5.2+dfsg-5 install ok installed libblkid1:amd64 libblkid1 2.40.1-9 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.38-13 install ok installed libc6:amd64 libc6 2.38-13 install ok installed libcairo2:amd64 libcairo2 1.18.0-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcdi-api-java libcdi-api-java 1.2-3 install ok installed libcodemodel-java libcodemodel-java 2.6+jaxb2.3.0.1-10.1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcommons-cli-java libcommons-cli-java 1.6.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.16.0-1 install ok installed libcommons-compress-java libcommons-compress-java 1.25.0-1 install ok installed libcommons-io-java libcommons-io-java 2.16.1-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang-java libcommons-lang-java 2.6-10 install ok installed libcommons-lang3-java libcommons-lang3-java 3.14.0-1 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcups2t64:amd64 libcups2t64 2.4.10-1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.8.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libdeflate0:amd64 libdeflate0 1.20-1 install ok installed libdom4j-java libdom4j-java 2.1.4-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.121-2 install ok installed libdrm-common libdrm-common 2.4.121-2 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.121-2 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.121-2 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.121-2 install ok installed libdrm2:amd64 libdrm2 2.4.121-2 install ok installed libdtd-parser-java libdtd-parser-java 1.2-1 install ok installed libedit2:amd64 libedit2 3.1-20240517-1 install ok installed libedlib0 libedlib0 1.2.6-1 install ok installed libedlib1:amd64 libedlib1 1.2.7-5 install ok installed libelf1t64:amd64 libelf1t64 0.191-1+b1 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libfastinfoset-java libfastinfoset-java 1.2.12-3 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b4 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14.1.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-6 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-6 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.12+dfsg-1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.12+dfsg-1 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.3-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-4 install ok installed libgif7:amd64 libgif7 5.2.2-1 install ok installed libgl1:amd64 libgl1 1.7.0-1+b1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 24.1.2-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 24.1.2-1 deinstall ok config-files libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u4 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.80.3-1 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1+b1 install ok installed libglx-mesa0:amd64 libglx-mesa0 24.1.2-1 install ok installed libglx0:amd64 libglx0 1.7.0-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-4 install ok installed libgomp1:amd64 libgomp1 14.1.0-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.49-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.2-1 install ok installed libgtk2.0-0t64:amd64 libgtk2.0-0t64 2.24.33-4 install ok installed libgtk2.0-common libgtk2.0-common 2.24.33-4 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libguice-java libguice-java 4.2.3-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhat-trie0:amd64 libhat-trie0 0.1.2-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libhts3t64:amd64 libhts3t64 1.20+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.0+dfsg-2 install ok installed libhttpclient-java libhttpclient-java 4.5.14-1 install ok installed libhttpcore-java libhttpcore-java 4.4.16-1 install ok installed libicu72:amd64 libicu72 72.1-5 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libistack-commons-java libistack-commons-java 3.0.6-5 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-10.1 install ok installed libjaxen-java libjaxen-java 1.1.6-4 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3 install ok installed libjsoncpp24:amd64 libjsoncpp24 1.9.4-4 install ok installed libjsoncpp25:amd64 libjsoncpp25 1.9.5-6+b2 install ok installed libjsoup-java libjsoup-java 1.15.3-1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.2-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.2-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.2-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed libllvm11:amd64 libllvm11 1:11.0.1-2 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-12+b1 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.2-1 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-1 install ok installed libmaven-parent-java libmaven-parent-java 35-1 install ok installed libmaven-resolver-java libmaven-resolver-java 1.6.3-1 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-4 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.3.4-1 install ok installed libmaven3-core-java libmaven3-core-java 3.8.7-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedcrypto7t64:amd64 libmbedcrypto7t64 2.28.8-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedtls14t64:amd64 libmbedtls14t64 2.28.8-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmbedx509-1t64:amd64 libmbedx509-1t64 2.28.8-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmjson-java libmjson-java 1.4.0-3 install ok installed libmount1:amd64 libmount1 2.40.1-9 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.3+dfsg-7+b1 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.2+dfsg-2+b1 install ok installed libncurses6:amd64 libncurses6 6.5-2 install ok installed libncursesw6:amd64 libncursesw6 6.5-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.62.1-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.3.0-2 install ok installed libngs-java:amd64 libngs-java 3.0.3+dfsg-7+b1 install ok installed libngs-jni:amd64 libngs-jni 3.0.3+dfsg-7+b1 install ok installed libngs-sdk-dev:amd64 libngs-sdk-dev 2.10.9-1 install ok installed libngs-sdk2:amd64 libngs-sdk2 2.10.9-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.5.0-2 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.5.0-2 install ok installed libnlopt0:amd64 libnlopt0 2.7.1-5+b3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b2 install ok installed libnspr4:amd64 libnspr4 2:4.35-1.1+b1 install ok installed libnss3:amd64 libnss3 2:3.101-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.54.0+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.54.0+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.54.0+ds-1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libpcsclite1:amd64 libpcsclite1 2.2.3-1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-5 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libplexus-archiver-java libplexus-archiver-java 4.6.1-1 install ok installed libplexus-cipher-java libplexus-cipher-java 2.0-1 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.7.0-1 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 2.1.1-1 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.26-1 install ok installed libplexus-io-java libplexus-io-java 3.3.1-2 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 2.0-3 install ok installed libplexus-utils2-java libplexus-utils2-java 3.4.2-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-4 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.2-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.4-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.4-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3.1 install ok installed librhino-java librhino-java 1.7.14-2.1 install ok installed librngom-java librngom-java 2.3.0.1-10.1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsensors-config libsensors-config 1:3.6.0-10 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-10 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.4.0-0.1 install ok installed libsisu-inject-java libsisu-inject-java 0.3.4-2 install ok installed libsisu-plexus-java libsisu-plexus-java 0.3.4-3 install ok installed libslf4j-java libslf4j-java 1.7.32-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.1-9 install ok installed libsnappy-java libsnappy-java 1.1.10.5-2 install ok installed libsnappy-jni libsnappy-jni 1.1.10.5-2 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.1-1 install ok installed libspoa7.0.0:amd64 libspoa7.0.0 4.1.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.0-1 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-5 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3t64:amd64 libssl3t64 3.2.2-1 install ok installed libssw0:amd64 libssw0 1.1-14+b1 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++6:amd64 libstdc++6 14.1.0-3 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1.1 install ok installed libsystemd0:amd64 libsystemd0 256.1-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtbb2:amd64 libtbb2 2020.3-1 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3 install ok installed libtxw2-java libtxw2-java 2.3.0.1-10.1 install ok installed libudev1:amd64 libudev1 256.1-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.1-9 install ok installed libvulkan1:amd64 libvulkan1 1.3.283.0-1 install ok installed libwagon-http-java libwagon-http-java 3.5.3-1 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.5.3-1 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1+b1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.7-1+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1+b1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.17.0-2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1+b1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.2-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b1 install ok installed libxi6:amd64 libxi6 2:1.8.1-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b1 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg-3 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1+b1 install ok installed libxsom-java libxsom-java 2.3.0.1-10.1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1+b1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libxz-java libxz-java 1.9-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1+b1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.15.2-3 install ok installed logsave logsave 1.47.1-1 install ok installed lsb-base lsb-base 11.6 install ok installed mawk mawk 1.3.4.20240622-1 install ok installed media-types media-types 10.1.0 install ok installed miniasm miniasm 0.3+dfsg-4 install ok installed mount mount 2.40.1-9 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-4+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-2 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.2+dfsg-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed netbase netbase 6.4 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.24~7ea-1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.24~7ea-1 install ok installed openjdk-17-jre:amd64 openjdk-17-jre 17.0.12~6ea-1 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.12~6ea-1 install ok installed openssl openssl 3.2.2-1 install ok installed passwd passwd 1:4.15.2-3 install ok installed perl perl 5.38.2-5 install ok installed perl-base perl-base 5.38.2-5 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-5 install ok installed pilon pilon 1.24-3 install ok installed procps procps 2:4.0.4-4 install ok installed python3 python3 3.12.2-1 install ok installed python3-distutils python3-distutils 3.12.3-3.1 install ok installed python3-joblib python3-joblib 1.3.2-2 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-3.1 install ok installed python3-minimal python3-minimal 3.12.2-1 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3.12 python3.12 3.12.4-1 install ok installed python3.12-minimal python3.12-minimal 3.12.4-1 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed racon racon 1.5.0-3 install ok installed readline-common readline-common 8.2-4 install ok installed samtools samtools 1.20-3 install ok installed scala-library scala-library 2.11.12-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed shared-mime-info shared-mime-info 2.4-5 install ok installed spades spades 3.15.5+dfsg-7 install ok installed sysvinit-utils sysvinit-utils 3.09-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicycler unicycler 0.5.0+dfsg-1 install ok installed unzip unzip 6.0-28 install ok installed util-linux util-linux 2.40.1-9 install ok installed x11-common x11-common 1:7.7+23 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 2m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'remove', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bcftools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk1.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libedlib1:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0t64:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm17t64:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8t64:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'miniasm', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'pilon', 'procps', 'python3', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-setuptools', 'python3-yaml', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common', 'unicycler'] 2m13.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libglib2.0-0' is not installed, so not removed The following packages will be REMOVED: adwaita-icon-theme ant ant-optional at-spi2-common bamtools bcftools bowtie2 bwa ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme java-common java-wrappers libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2-data libasound2t64 libatinject-jsr330-api-java libatk1.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbamtools2.5.2 libbrotli1 libcairo2 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2t64 libcurl3t64-gnutls libdatrie1 libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libedlib0 libedlib1 libelf1t64 liberror-prone-java libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk2.0-0t64 libgtk2.0-common libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts3t64 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libicu72 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjpeg62-turbo libjsoncpp24 libjsoncpp25 libjsoup-java libjsr305-java liblcms2-2 libldap-2.4-2 libldap-2.5-0 liblerc4 libllvm11 libllvm17t64 liblmdb0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedcrypto7t64 libmbedtls12 libmbedtls14t64 libmbedx509-0 libmbedx509-1t64 libmjson-java libmpdec3 libncbi-ngs3 libncbi-vdb3 libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngs-sdk-dev libngs-sdk2 libngtcp2-16 libngtcp2-crypto-gnutls8 libnlopt0 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libperl5.32 libperl5.38t64 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16t64 libproc2-0 libprocps8 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8t64 librelaxng-datatype-java librhino-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv0 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa7.0.0 libsqlite3-0 libssh2-1t64 libssw0 libstax-ex-java libstreambuffer-java libtbb2 libthai-data libthai0 libtiff6 libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-resolver1.1-java libxml2 libxrandr2 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 media-types miniasm ncbi-blast+ ncbi-data ncbi-vdb-data netbase openjdk-11-jre openjdk-11-jre-headless openjdk-17-jre openjdk-17-jre-headless openssl perl perl-modules-5.32 perl-modules-5.38 pilon procps python3 python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-packaging python3-pkg-resources python3-setuptools python3-yaml python3.12 python3.12-minimal python3.9 python3.9-minimal racon readline-common samtools scala-library sensible-utils shared-mime-info spades ucf unicycler unzip x11-common 0 upgraded, 0 newly installed, 272 to remove and 0 not upgraded. After this operation, 1124 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19648 files and directories currently installed.) Removing unicycler (0.5.0+dfsg-1) ... Removing pilon (1.24-3) ... Removing default-jre (2:1.17-75) ... Removing openjdk-17-jre:amd64 (17.0.12~6ea-1) ... Removing libgtk2.0-0t64:amd64 (2.24.33-4) ... Removing adwaita-icon-theme (46.0-1) ... Removing libjaxb-java (2.3.0.1-10.1) ... Removing libtxw2-java (2.3.0.1-10.1) ... Removing libatk1.0-0t64:amd64 (2.52.0-1) ... Removing at-spi2-common (2.52.0-1) ... Removing spades (3.15.5+dfsg-7) ... Removing bamtools (2.5.2+dfsg-5) ... Removing bcftools (1.20-2) ... Removing bowtie2 (2.5.3-1) ... Removing bwa (0.7.17-7+b3) ... Removing openjdk-11-jre:amd64 (11.0.24~7ea-1) ... Removing openjdk-11-jre-headless:amd64 (11.0.24~7ea-1) ... Removing default-jre-headless (2:1.17-75) ... Removing libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... Removing libpango-1.0-0:amd64 (1.54.0+ds-1) ... Removing fontconfig (2.15.0-1.1) ... Removing libcairo2:amd64 (1.18.0-3+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing gtk-update-icon-cache (3.24.42-1) ... Removing hicolor-icon-theme (0.18-1) ... Removing java-wrappers (0.4) ... Removing libfastinfoset-java (1.2.12-3) ... Removing libstreambuffer-java (1.5.4-1.1) ... Removing libstax-ex-java (1.7.8-3) ... Removing libjaxb-api-java (2.3.1-1) ... Removing libhtsjdk-java (4.1.0+dfsg-2) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing libasound2t64:amd64 (1.2.12-1) ... Removing libasound2-data (1.2.12-1) ... Removing libcups2t64:amd64 (2.4.10-1) ... Removing libavahi-client3:amd64 (0.8-13+b2) ... Removing libavahi-common3:amd64 (0.8-13+b2) ... Removing libavahi-common-data:amd64 (0.8-13+b2) ... Removing libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Removing libbamtools2.5.2:amd64 (2.5.2+dfsg-5) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Removing samtools (1.20-3) ... Removing libhts3t64:amd64 (1.20+ds-1) ... Removing libcurl3t64-gnutls:amd64 (8.8.0-2) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libcommons-lang-java (2.6-10) ... Removing libthai0:amd64 (0.1.29-2) ... Removing libdatrie1:amd64 (0.2.13-3) ... Removing libdbus-1-3:amd64 (1.14.10-4+b1) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.20-1) ... Removing libgl1:amd64 (1.7.0-1+b1) ... Removing libglx0:amd64 (1.7.0-1+b1) ... Removing libglx-mesa0:amd64 (24.1.2-1) ... Removing libgl1-mesa-dri:amd64 (24.1.2-1) ... Removing libdrm-amdgpu1:amd64 (2.4.121-2) ... Removing libdrm-radeon1:amd64 (2.4.121-2) ... Removing libdrm-nouveau2:amd64 (2.4.121-2) ... Removing libdrm-intel1:amd64 (2.4.121-2) ... Removing libdtd-parser-java (1.2-1) ... Removing libllvm11:amd64 (1:11.0.1-2) ... Removing libllvm17t64:amd64 (1:17.0.6-12+b1) ... Removing libedit2:amd64 (3.1-20240517-1) ... Removing libedlib0 (1.2.6-1) ... Removing racon (1.5.0-3) ... Removing libedlib1:amd64 (1.2.7-5) ... Removing libelf1t64:amd64 (0.191-1+b1) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing python3-yaml (6.0.1-2) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.12.3-3.1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing ncbi-blast+ (2.12.0+ds-4+b1) ... Removing perl (5.38.2-5) ... Removing libperl5.38t64:amd64 (5.38.2-5) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4t64:amd64 (1.23-6) ... Removing libgdbm6t64:amd64 (1.23-6) ... Removing libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Removing libgif7:amd64 (5.2.2-1) ... Removing libglapi-mesa:amd64 (24.1.2-1) ... Removing shared-mime-info (2.4-5) ... Removing libglib2.0-0t64:amd64 (2.80.3-1) ... Removing libglvnd0:amd64 (1.7.0-1+b1) ... Removing libgomp1:amd64 (14.1.0-3) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libgtk2.0-common (2.24.33-4) ... Removing libhat-trie0:amd64 (0.1.2-3) ... Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libxml2:amd64 (2.12.7+dfsg-3) ... Removing libicu72:amd64 (72.1-5) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjsoncpp24:amd64 (1.9.4-4) ... Removing libjsoncpp25:amd64 (1.9.5-6+b2) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-1) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing liblmdb0:amd64 (0.9.31-1+b1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libngs-java:amd64 (3.0.3+dfsg-7+b1) ... Removing libngs-jni:amd64 (3.0.3+dfsg-7+b1) ... Removing libncbi-ngs3:amd64 (3.0.3+dfsg-7+b1) ... Removing libncbi-vdb3:amd64 (3.0.2+dfsg-2+b1) ... Removing libmbedtls14t64:amd64 (2.28.8-1) ... Removing libmbedx509-1t64:amd64 (2.28.8-1) ... Removing libmbedcrypto7t64:amd64 (2.28.8-1) ... Removing libmjson-java (1.4.0-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncurses6:amd64 (6.5-2) ... Removing python3-joblib (1.3.2-2) ... Removing procps (2:4.0.4-4) ... Removing libnghttp2-14:amd64 (1.62.1-1) ... Removing libnghttp3-9:amd64 (1.3.0-2) ... Removing libngs-sdk-dev:amd64 (2.10.9-1) ... Removing libngs-sdk2:amd64 (2.10.9-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.5.0-2) ... Removing libngtcp2-16:amd64 (1.5.0-2) ... Removing libnlopt0:amd64 (2.7.1-5+b3) ... Removing libpciaccess0:amd64 (0.17-3+b1) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libproc2-0:amd64 (2:4.0.4-4) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libxsom-java (2.3.0.1-10.1) ... Removing librngom-java (2.3.0.1-10.1) ... Removing librelaxng-datatype-java (1.0+ds1-3.1) ... Removing librhino-java (1.7.14-2.1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing libsensors5:amd64 (1:3.6.0-10) ... Removing libsensors-config (1:3.6.0-10) ... Removing libwebp7:amd64 (1.4.0-0.1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1) ... Removing libspoa7.0.0:amd64 (4.1.4-1) ... Removing libssh2-1t64:amd64 (1.11.0-5) ... Removing libssw0:amd64 (1.1-14+b1) ... Removing libtbb2:amd64 (2020.3-1) ... Removing libthai-data (0.1.29-2) ... Removing libvulkan1:amd64 (1.3.283.0-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxtst6:amd64 (2:1.2.3-1.1+b1) ... Removing libx11-xcb1:amd64 (2:1.8.7-1+b1) ... Removing libxcb-xfixes0:amd64 (1.17.0-2) ... Removing libxcb-sync1:amd64 (1.17.0-2) ... Removing libxcb-dri2-0:amd64 (1.17.0-2) ... Removing libxcb-dri3-0:amd64 (1.17.0-2) ... Removing libxcb-glx0:amd64 (1.17.0-2) ... Removing libxcb-present0:amd64 (1.17.0-2) ... Removing libxcb-randr0:amd64 (1.17.0-2) ... Removing libxcb-render0:amd64 (1.17.0-2) ... Removing libxcb-shm0:amd64 (1.17.0-2) ... Removing libxcomposite1:amd64 (1:0.4.5-1+b1) ... Removing libxcursor1:amd64 (1:1.2.2-1) ... Removing libxdamage1:amd64 (1:1.1.6-1+b1) ... Removing libxrandr2:amd64 (2:1.5.4-1) ... Removing libxfixes3:amd64 (1:6.0.0-2+b1) ... Removing libxi6:amd64 (2:1.8.1-1) ... Removing libxinerama1:amd64 (2:1.1.4-3+b1) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b1) ... Removing libxshmfence1:amd64 (1.3-1+b1) ... Removing libyaml-0-2:amd64 (0.2.5-1+b1) ... Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing miniasm (0.3+dfsg-4) ... Removing ncbi-data (6.1.20170106+dfsg2-2) ... Removing ncbi-vdb-data (3.0.2+dfsg-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing perl-modules-5.38 (5.38.2-5) ... Removing python3-lib2to3 (3.12.3-3.1) ... Removing python3-packaging (24.0-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing scala-library (2.11.12-5) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.24) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libdrm2:amd64 (2.4.121-2) ... Removing libdrm-common (2.4.121-2) ... Removing python3 (3.12.2-1) ... Removing python3.12 (3.12.4-1) ... Removing libpython3-stdlib:amd64 (3.12.2-1) ... Removing libpython3.12-stdlib:amd64 (3.12.4-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.5-2) ... Removing python3-minimal (3.12.2-1) ... Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Removing python3.12-minimal (3.12.4-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3.12-minimal:amd64 (3.12.4-1) ... find: '/usr/lib/python3': No such file or directory Removing libx11-6:amd64 (2:1.8.7-1+b1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxcb1:amd64 (1.17.0-2) ... Removing libxau6:amd64 (1:1.0.9-1+b1) ... Removing libxdmcp6:amd64 (1:1.1.2-3+b1) ... Removing libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... Removing libistack-commons-java (3.0.6-5) ... Removing ant-optional (1.10.14-1) ... Removing ant (1.10.14-1) ... Removing openjdk-17-jre-headless:amd64 (17.0.12~6ea-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing java-common (0.75) ... Removing libactivation-java (1.2.0-2) ... Removing libmaven-file-management-java (3.0.0-1) ... Removing libmaven-shared-io-java (3.0.0-4) ... Removing libmaven3-core-java (3.8.7-2) ... Removing libguice-java (4.2.3-2) ... Removing libaopalliance-java (20070526-7) ... Removing libmaven-parent-java (35-1) ... Removing libargs4j-java (2.33-2) ... Removing libplexus-sec-dispatcher-java (2.0-3) ... Removing libplexus-cipher-java (2.0-1) ... Removing libsisu-plexus-java (0.3.4-3) ... Removing libsisu-inject-java (0.3.4-2) ... Removing libcdi-api-java (1.2-3) ... Removing libcommons-cli-java (1.6.0-1) ... Removing libwagon-http-java (3.5.3-1) ... Removing libhttpclient-java (4.5.14-1) ... Removing libcommons-codec-java (1.16.0-1) ... Removing libplexus-archiver-java (4.6.1-1) ... Removing libcommons-compress-java (1.25.0-1) ... Removing libplexus-io-java (3.3.1-2) ... Removing libmaven-shared-utils-java (3.3.4-1) ... Removing libcommons-io-java (2.16.1-1) ... Removing libmaven-resolver-java (1.6.3-1) ... Removing libcommons-lang3-java (3.14.0-1) ... Removing libdom4j-java (2.1.4-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libguava-java (32.0.1-1) ... Removing libgeronimo-annotation-1.3-spec-java (1.3-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Removing libhttpcore-java (4.4.16-1) ... Removing libjaxen-java (1.1.6-4) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3) ... Removing libjsoup-java (1.15.3-1) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libnss3:amd64 (2:3.101-1) ... Removing libnspr4:amd64 (2:4.35-1.1+b1) ... Removing libpcsclite1:amd64 (2.2.3-1) ... Removing libplexus-classworlds-java (2.7.0-1) ... Removing libplexus-component-annotations-java (2.1.1-1) ... Removing libplexus-interpolation-java (1.26-1) ... Removing libwagon-provider-api-java (3.5.3-1) ... Removing libplexus-utils2-java (3.4.2-1) ... Removing libslf4j-java (1.7.32-1) ... Removing libsnappy-java (1.1.10.5-2) ... Removing libsnappy-jni (1.1.10.5-2) ... Removing libsnappy1v5:amd64 (1.2.1-1) ... Removing libsqlite3-0:amd64 (3.46.0-1) ... Removing libxz-java (1.9-1) ... Removing openssl (3.2.2-1) ... Removing libcommons-logging-java (1.3.0-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (29-2) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Processing triggers for libc-bin (2.38-13) ... 2m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'remove', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bcftools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk1.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libedlib1:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0t64:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm17t64:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8t64:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'miniasm', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'pilon', 'procps', 'python3', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-setuptools', 'python3-yaml', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common', 'unicycler'] 2m13.4s INFO: Running scripts post_remove 2m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_remove_exceptions'] 2m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_remove_exceptions'] 2m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--purge', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bcftools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk1.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libedlib1:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0t64:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm17t64:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8t64:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'miniasm', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'pilon', 'procps', 'python3', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-setuptools', 'python3-yaml', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common'] 2m14.1s DUMP: (Reading database ... 5517 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (46.0-1) ... dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove at-spi2-common which isn't installed dpkg: warning: ignoring request to remove bamtools which isn't installed dpkg: warning: ignoring request to remove bcftools which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig (2.15.0-1.1) ... Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed Purging configuration files for java-common (0.75) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove libactivation-java which isn't installed dpkg: warning: ignoring request to remove libaopalliance-java which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libargs4j-java which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libasound2t64 which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0t64 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.1 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.2 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcdi-api-java which isn't installed dpkg: warning: ignoring request to remove libcodemodel-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcups2t64 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdtd-parser-java which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libedlib0 which isn't installed dpkg: warning: ignoring request to remove libedlib1 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfastinfoset-java which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgeronimo-annotation-1.3-spec-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-interceptor-3.0-spec-java which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (24.1.2-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.80.3-1) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgtk2.0-0t64:amd64 (2.24.33-4) ... Purging configuration files for libgtk2.0-common (2.24.33-4) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libguice-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhat-trie0 which isn't installed dpkg: warning: ignoring request to remove libhts3t64 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libistack-commons-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-api-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-java which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjsoncpp24 which isn't installed dpkg: warning: ignoring request to remove libjsoncpp25 which isn't installed dpkg: warning: ignoring request to remove libjsoup-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm11 which isn't installed dpkg: warning: ignoring request to remove libllvm17t64 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmaven-file-management-java which isn't installed dpkg: warning: ignoring request to remove libmaven-parent-java which isn't installed dpkg: warning: ignoring request to remove libmaven-resolver-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-io-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-utils-java which isn't installed dpkg: warning: ignoring request to remove libmaven3-core-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7t64 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14t64 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1t64 which isn't installed dpkg: warning: ignoring request to remove libmjson-java which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed dpkg: warning: ignoring request to remove libngs-sdk-dev which isn't installed dpkg: warning: ignoring request to remove libngs-sdk2 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libperl5.38t64 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libplexus-archiver-java which isn't installed dpkg: warning: ignoring request to remove libplexus-cipher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-classworlds-java which isn't installed dpkg: warning: ignoring request to remove libplexus-component-annotations-java which isn't installed dpkg: warning: ignoring request to remove libplexus-interpolation-java which isn't installed dpkg: warning: ignoring request to remove libplexus-io-java which isn't installed dpkg: warning: ignoring request to remove libplexus-sec-dispatcher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-utils2-java which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.4-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librelaxng-datatype-java which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librngom-java which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-10) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsisu-inject-java which isn't installed dpkg: warning: ignoring request to remove libsisu-plexus-java which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libspoa7.0.0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libstax-ex-java which isn't installed dpkg: warning: ignoring request to remove libstreambuffer-java which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtxw2-java which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwagon-http-java which isn't installed dpkg: warning: ignoring request to remove libwagon-provider-api-java which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ... dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxsom-java which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove miniasm which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-2) ... dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove openjdk-11-jre which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.24~7ea-1) ... dpkg: warning: ignoring request to remove openjdk-17-jre which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.12~6ea-1) ... Purging configuration files for openssl (3.2.2-1) ... Purging configuration files for perl (5.38.2-5) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.38 which isn't installed dpkg: warning: ignoring request to remove pilon which isn't installed Purging configuration files for procps (2:4.0.4-4) ... Purging configuration files for python3 (3.12.2-1) ... dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.4-1) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... dpkg: warning: ignoring request to remove racon which isn't installed Purging configuration files for readline-common (8.2-4) ... dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove scala-library which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.4-5) ... dpkg: warning: ignoring request to remove spades which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for unzip (6.0-28) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--purge', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bcftools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2-data', 'libasound2t64:amd64', 'libatinject-jsr330-api-java', 'libatk1.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libedlib1:amd64', 'libelf1t64:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0t64:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm17t64:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8t64:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'miniasm', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'pilon', 'procps', 'python3', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-setuptools', 'python3-yaml', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common'] 2m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--purge', 'unicycler'] 2m14.1s DUMP: dpkg: warning: ignoring request to remove unicycler which isn't installed 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--purge', 'unicycler'] 2m14.1s INFO: Running scripts post_purge 2m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_purge_exceptions'] 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_purge_exceptions'] 2m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--purge', '--pending'] 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--purge', '--pending'] 2m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--remove', '--pending'] 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg', '--remove', '--pending'] 2m14.1s INFO: Running scripts post_test 2m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_test_exceptions'] 2m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'tmp/scripts/post_test_exceptions'] 2m14.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 2m14.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 2m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg-divert', '--list'] 2m14.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64 diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64 2m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'dpkg-divert', '--list'] 2m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'clean'] 2m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw', 'apt-get', 'clean'] 2m14.7s DEBUG: Recording chroot state 2m15.4s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-mono, fonts-dejavu-core /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-mono, fonts-dejavu-core /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 2m15.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/shm'] 2m15.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/shm'] 2m15.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/console'] 2m15.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/console'] 2m15.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/ptmx'] 2m15.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/ptmx'] 2m15.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/pts'] 2m15.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/dev/pts'] 2m15.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/proc'] 2m16.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw/proc'] 2m16.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 2m16.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpa6twn8fw'] 2m16.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpa6twn8fw 2m16.1s INFO: PASS: Upgrading between Debian distributions. 2m16.1s INFO: PASS: All tests. 2m16.1s INFO: piuparts run ends. ret=0 End: 2024-07-03 19:08:11 GMT