Start: 2023-03-15 23:07:49 GMT Package: r-bioc-hilbertvis Version: 1.32.0-1 Installed-Size: 1410 Maintainer: Debian-Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), r-base-core (>= 3.3.1.20161024-1), r-api-3, r-cran-lattice Suggests: r-bioc-iranges Description: GNU R package to visualise long vector data Homepage: https://bioconductor.org/packages/HilbertVis Description-md5: ef2bbbd3831fe633c838f37f00806810 Tag: field::biology, field::biology:bioinformatics, implemented-in::r, use::analysing Section: math Priority: optional Filename: pool/main/r/r-bioc-hilbertvis/r-bioc-hilbertvis_1.32.0-1_amd64.deb Size: 972148 MD5sum: 1b5438dd38fa0ec2ecd83d74d7abb2c1 SHA256: b03c8bd48b7d50b96a8deeddc59f30605b4ea07cddb4063012de0810ededfe4b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt r-bioc-hilbertvis=1.32.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt r-bioc-hilbertvis=1.32.0-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppe_xvjpr 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppe_xvjpr 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppe_xvjpr/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'update'] 0m2.1s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_minimize'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_minimize'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_zz_backports'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_setup_zz_backports'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'clean'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'clean'] 0m3.3s DEBUG: Recording chroot state 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-divert', '--list'] 0m3.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-divert', '--list'] 0m3.6s INFO: Running scripts is_testable 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s INFO: apt-cache does not know about any of the requested packages 0m3.6s INFO: Running scripts pre_test 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_test_root_password'] 0m3.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_test_root_password'] 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m4.2s DEBUG: No broken symlinks as far as we can find. 0m4.2s INFO: Running scripts pre_install 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m4.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-cache', 'policy'] 0m5.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-cache', 'policy'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-cache', 'policy', 'r-bioc-hilbertvis'] 0m5.9s DUMP: r-bioc-hilbertvis: Installed: (none) Candidate: 1.32.0-1 Version table: 1.32.0-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-cache', 'policy', 'r-bioc-hilbertvis'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', '-y', 'install', 'r-bioc-hilbertvis=1.32.0-1'] 0m37.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-6 dbus dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-6 gcc gcc-6 gfortran gfortran-6 gnupg gnupg-agent gnupg-l10n icu-devtools krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan3 libassuan0 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcurl3 libdatrie1 libdbus-1-3 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-6-dev libgdbm3 libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu57 libidn11 libidn2-0 libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libllvm3.9 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmpc3 libmpfr4 libmpx2 libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnpth0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpsl5 libquadmath0 libreadline-dev libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libtasn1-6 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libtxc-dxtn-s2tc libubsan0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev lsb-base make manpages manpages-dev netbase openssl patch perl perl-modules-5.24 perl-openssl-defaults pinentry-curses pkg-config publicsuffix r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rename sgml-base shared-mime-info tzdata ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev Suggested packages: binutils-doc devscripts cpp-doc gcc-6-locales default-dbus-session-bus | dbus-session-bus dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring g++-multilib g++-6-multilib gcc-6-doc libstdc++6-6-dbg gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev parcimonie xloadimage scdaemon libdigest-hmac-perl libgssapi-perl liblapack-doc-man liblapack-doc glibc-doc gnutls-bin gpm krb5-doc krb5-user libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc pciutils readline-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libstdc++-6-doc tcl8.6 tk8.6 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl pinentry-doc ess r-doc-info | r-doc-pdf r-mathlib r-base-html debhelper texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-iranges mozilla | www-browser sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin The following NEW packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-6 dbus dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-6 gcc gcc-6 gfortran gfortran-6 gnupg gnupg-agent gnupg-l10n icu-devtools krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan3 libassuan0 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcurl3 libdatrie1 libdbus-1-3 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-6-dev libgdbm3 libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu57 libidn11 libidn2-0 libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libllvm3.9 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmpc3 libmpfr4 libmpx2 libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnpth0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpsl5 libquadmath0 libreadline-dev libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libtasn1-6 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libtxc-dxtn-s2tc libubsan0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev lsb-base make manpages manpages-dev netbase openssl patch perl perl-modules-5.24 perl-openssl-defaults pinentry-curses pkg-config publicsuffix r-base-core r-base-dev r-bioc-hilbertvis r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rename sgml-base shared-mime-info tzdata ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 277 newly installed, 0 to remove and 0 not upgraded. Need to get 178 MB of archives. After this operation, 711 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libpcrecpp0v5 amd64 2:8.39-3 [151 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libassuan0 amd64 2.4.3-2 [42.5 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libnpth0 amd64 1.3-1 [14.6 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 manpages all 4.10-2 [1222 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 binutils amd64 2.28-5 [3770 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libisl15 amd64 0.18-1 [564 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libmpc3 amd64 1.0.3-1+b2 [39.9 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 cpp amd64 4:6.3.0-4 [18.7 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libcc1-0 amd64 6.3.0-18+deb9u1 [30.6 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:82 http://deb.debian.org/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 gcc amd64 4:6.3.0-4 [5196 B] Get:92 http://deb.debian.org/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 g++ amd64 4:6.3.0-4 [1546 B] Get:95 http://deb.debian.org/debian stretch/main amd64 make amd64 4.1-9.1 [302 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libdpkg-perl all 1.18.25 [1287 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 patch amd64 2.7.5-1+deb9u2 [112 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 dpkg-dev all 1.18.25 [1595 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 build-essential amd64 12.3 [7346 B] Get:100 http://deb.debian.org/debian stretch/main amd64 bzip2-doc all 1.0.6-8.1 [307 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 cdbs all 0.4.150 [82.6 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libgfortran-6-dev amd64 6.3.0-18+deb9u1 [299 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 gfortran-6 amd64 6.3.0-18+deb9u1 [6916 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 gfortran amd64 4:6.3.0-4 [1356 B] Get:111 http://deb.debian.org/debian stretch/main amd64 icu-devtools amd64 57.1-6+deb9u4 [178 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libblas-dev amd64 3.7.0-2 [162 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 libdrm2 amd64 2.4.74-1 [36.2 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 libelf1 amd64 0.168-1 [157 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 libipc-system-simple-perl all 1.25-3 [26.9 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 libfile-basedir-perl all 0.07-1 [17.5 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 libfile-desktopentry-perl all 0.22-1 [19.2 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 libfile-fcntllock-perl amd64 0.22-3+b2 [35.3 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 libfile-mimeinfo-perl all 0.27-1 [50.2 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:155 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:158 http://deb.debian.org/debian stretch/main amd64 libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:164 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:167 http://deb.debian.org/debian stretch/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 libicu-dev amd64 57.1-6+deb9u4 [16.5 MB] Get:185 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:186 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 liblapack-dev amd64 3.7.0-2 [2170 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:197 http://deb.debian.org/debian stretch/main amd64 liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:199 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:200 http://deb.debian.org/debian stretch/main amd64 libtinfo-dev amd64 6.0+20161126-1+deb9u2 [79.2 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 libncurses5-dev amd64 6.0+20161126-1+deb9u2 [175 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 libxml-twig-perl all 1:3.50-1 [179 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libnet-dbus-perl amd64 1.1.0-4+b1 [179 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 libpcre16-3 amd64 2:8.39-3 [258 kB] Get:213 http://deb.debian.org/debian stretch/main amd64 libpcre32-3 amd64 2:8.39-3 [248 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 libpcre3-dev amd64 2:8.39-3 [647 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 libpng-dev amd64 1.6.28-1+deb9u1 [250 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 libpng-tools amd64 1.6.28-1+deb9u1 [133 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 libreadline-dev amd64 7.0-3 [132 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:223 http://deb.debian.org/debian stretch/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:226 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 libx11-protocol-perl all 0.56-7 [150 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:232 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:235 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:236 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:238 http://deb.debian.org/debian stretch/main amd64 libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:239 http://deb.debian.org/debian stretch/main amd64 libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:243 http://deb.debian.org/debian stretch/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] Get:245 http://deb.debian.org/debian stretch/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:246 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:248 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:249 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:250 http://deb.debian.org/debian stretch/main amd64 xauth amd64 1:1.0.9-1+b2 [39.6 kB] Get:251 http://deb.debian.org/debian stretch/main amd64 r-base-dev all 3.3.3-1 [4402 B] Get:252 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 r-bioc-hilbertvis amd64 1.32.0-1 [972 kB] Get:254 http://deb.debian.org/debian stretch/main amd64 r-cran-boot all 1.3-18-2 [577 kB] Get:255 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:256 http://deb.debian.org/debian stretch/main amd64 r-cran-class amd64 7.3-14-1 [80.9 kB] Get:257 http://deb.debian.org/debian stretch/main amd64 r-cran-cluster amd64 2.0.5-1 [490 kB] Get:258 http://deb.debian.org/debian stretch/main amd64 r-cran-codetools all 0.2-15-1 [46.2 kB] Get:259 http://deb.debian.org/debian stretch/main amd64 r-cran-foreign amd64 0.8.67-1 [211 kB] Get:260 http://deb.debian.org/debian stretch/main amd64 r-cran-kernsmooth amd64 2.23-15-2 [81.7 kB] Get:261 http://deb.debian.org/debian stretch/main amd64 r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:262 http://deb.debian.org/debian stretch/main amd64 r-cran-nlme amd64 3.1.129-1 [2042 kB] Get:263 http://deb.debian.org/debian stretch/main amd64 r-cran-mgcv amd64 1.8-16-1 [2106 kB] Get:264 http://deb.debian.org/debian stretch/main amd64 r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:265 http://deb.debian.org/debian stretch/main amd64 r-cran-survival amd64 2.40-1-1 [4863 kB] Get:266 http://deb.debian.org/debian stretch/main amd64 r-cran-rpart amd64 4.1-10-2 [861 kB] Get:267 http://deb.debian.org/debian stretch/main amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] Get:268 http://deb.debian.org/debian stretch/main amd64 r-doc-html all 3.3.3-1 [551 kB] Get:269 http://deb.debian.org/debian stretch/main amd64 r-recommended all 3.3.3-1 [2706 B] Get:270 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:271 http://deb.debian.org/debian stretch/main amd64 x11-utils amd64 7.7+3+b1 [202 kB] Get:272 http://deb.debian.org/debian stretch/main amd64 x11-xserver-utils amd64 7.7+7+b1 [167 kB] Get:273 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:274 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:275 http://deb.debian.org/debian stretch/main amd64 gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:276 http://deb.debian.org/debian stretch/main amd64 libtxc-dxtn-s2tc amd64 1.0+git20151227-2 [48.4 kB] Get:277 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 178 MB in 2s (64.0 MB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../001-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. 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Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up perl-openssl-defaults:amd64 (3) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up libipc-system-simple-perl (1.25-3) ... Setting up libfile-basedir-perl (0.07-1) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up libio-html-perl (1.001-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-9) ... Setting up libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libdpkg-perl (1.18.25) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libicu-dev (57.1-6+deb9u4) ... Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up libalgorithm-merge-perl (0.08-3) ... Setting up pkg-config (0.29-4+b1) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up libisl15:amd64 (0.18-1) ... Setting up dpkg-dev (1.18.25) ... Setting up libalgorithm-diff-xs-perl (0.04-4+b2) ... Setting up libfile-desktopentry-perl (0.22-1) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up pinentry-curses (1.0.0-2) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libpng-dev:amd64 (1.6.28-1+deb9u1) ... Setting up dbus (1.10.32-0+deb9u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up libfile-mimeinfo-perl (0.27-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up cpp (4:6.3.0-4) ... Setting up libxcb-present0:amd64 (1.12-1) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libxcb-dri2-0:amd64 (1.12-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libxcb-dri3-0:amd64 (1.12-1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libxcb-glx0:amd64 (1.12-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up gnupg (2.1.18-8~deb9u4) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up gcc-6 (6.3.0-18+deb9u1) ... Setting up libxcb-sync1:amd64 (1.12-1) ... Setting up g++-6 (6.3.0-18+deb9u1) ... Setting up libjpeg-dev (1:1.5.1-2) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxcb-shape0:amd64 (1.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libhttp-negotiate-perl (6.00-2) ... Setting up gfortran-6 (6.3.0-18+deb9u1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up gcc (4:6.3.0-4) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up xauth (1:1.0.9-1+b2) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up g++ (4:6.3.0-4) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up gfortran (4:6.3.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libmailtools-perl (2.18-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libblas-dev (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up build-essential (12.3) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Setting up x11-xserver-utils (7.7+7+b1) ... Setting up liblapack-dev (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up x11-utils (7.7+3+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-nnet (7.3-12-1) ... Setting up r-base-dev (3.3.3-1) ... Setting up r-cran-spatial (7.3-11-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-cluster (2.0.5-1) ... Setting up r-cran-boot (1.3-18-2) ... Setting up r-cran-codetools (0.2-15-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-nlme (3.1.129-1) ... Setting up r-cran-foreign (0.8.67-1) ... Setting up r-cran-class (7.3-14-1) ... Setting up r-cran-kernsmooth (2.23-15-2) ... Setting up r-bioc-hilbertvis (1.32.0-1) ... Setting up r-cran-matrix (1.2-7.1-1) ... Setting up r-cran-mgcv (1.8-16-1) ... Setting up r-cran-survival (2.40-1-1) ... Setting up r-cran-rpart (4.1-10-2) ... Setting up r-recommended (3.3.3-1) ... Setting up libwww-perl (6.15-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up libnet-dbus-perl (1.1.0-4+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', '-y', 'install', 'r-bioc-hilbertvis=1.32.0-1'] 0m37.5s INFO: Running scripts post_install 0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_install_exceptions'] 0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_install_exceptions'] 0m37.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m38.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m40.6s DEBUG: No broken symlinks as far as we can find. 0m41.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', '-ac', '--ignore-obsolete'] 0m44.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', '-ac', '--ignore-obsolete'] 0m44.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m44.4s DUMP: 0.15.6 0m44.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m44.4s INFO: Running adequate version 0.15.6 now. 0m44.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'r-bioc-hilbertvis'] 0m44.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'r-bioc-hilbertvis'] 0m44.5s INFO: Running scripts pre_remove 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_exceptions'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/pre_remove_exceptions'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m49.1s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed autotools-dev autotools-dev 20161112.1 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed binutils binutils 2.28-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed build-essential build-essential 12.3 install ok installed bzip2 bzip2 1.0.6-8.1 install ok installed bzip2-doc bzip2-doc 1.0.6-8.1 install ok installed ca-certificates ca-certificates 20200601~deb9u1 install ok installed cdbs cdbs 0.4.150 install ok installed coreutils coreutils 8.26-3 install ok installed cpp cpp 4:6.3.0-4 install ok installed cpp-6 cpp-6 6.3.0-18+deb9u1 install ok installed dash dash 0.5.8-2.4 install ok installed dbus dbus 1.10.32-0+deb9u1 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dirmngr dirmngr 2.1.18-8~deb9u4 install ok installed dpkg dpkg 1.18.25 install ok installed dpkg-dev dpkg-dev 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed fakeroot fakeroot 1.21-3.1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed g++ g++ 4:6.3.0-4 install ok installed g++-6 g++-6 6.3.0-18+deb9u1 install ok installed gcc gcc 4:6.3.0-4 install ok installed gcc-6 gcc-6 6.3.0-18+deb9u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gfortran gfortran 4:6.3.0-4 install ok installed gfortran-6 gfortran-6 6.3.0-18+deb9u1 install ok installed gnupg gnupg 2.1.18-8~deb9u4 install ok installed gnupg-agent gnupg-agent 2.1.18-8~deb9u4 install ok installed gnupg-l10n gnupg-l10n 2.1.18-8~deb9u4 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed icu-devtools icu-devtools 57.1-6+deb9u4 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed krb5-locales krb5-locales 1.15-1+deb9u1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-4+b2 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-3 install ok installed libapparmor1:amd64 libapparmor1 2.11.0-3+deb9u2 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libasan3:amd64 libasan3 6.3.0-18+deb9u1 install ok installed libassuan0:amd64 libassuan0 2.4.3-2 install ok installed libatomic1:amd64 libatomic1 6.3.0-18+deb9u1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas-dev libblas-dev 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc-dev-bin libc-dev-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libc6-dev:amd64 libc6-dev 2.24-11+deb9u4 install ok installed libcairo2:amd64 libcairo2 1.14.8-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcc1-0:amd64 libcc1-0 6.3.0-18+deb9u1 install ok installed libcilkrts5:amd64 libcilkrts5 6.3.0-18+deb9u1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libcurl3:amd64 libcurl3 7.52.1-5+deb9u10 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.10.32-0+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdpkg-perl libdpkg-perl 1.18.25 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.74-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.74-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.74-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.74-1 install ok installed libdrm2:amd64 libdrm2 2.4.74-1 install ok installed libedit2:amd64 libedit2 3.1-20160903-3 install ok installed libelf1:amd64 libelf1 0.168-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libfakeroot:amd64 libfakeroot 1.21-3.1 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfile-basedir-perl libfile-basedir-perl 0.07-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.22-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-3+b2 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.27-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.3-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u1 install ok installed libgcc-6-dev:amd64 libgcc-6-dev 6.3.0-18+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgfortran-6-dev:amd64 libgfortran-6-dev 6.3.0-18+deb9u1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 13.0.6-1+b2 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 13.0.6-1+b2 install ok installed libglapi-mesa:amd64 libglapi-mesa 13.0.6-1+b2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u2 install ok installed libglib2.0-data libglib2.0-data 2.50.3-2+deb9u2 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgpm2:amd64 libgpm2 1.20.4-6.2+b1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.11-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu-dev libicu-dev 57.1-6+deb9u4 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libidn2-0:amd64 libidn2-0 0.16-1+deb9u1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.044-1 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.25-3 install ok installed libisl15:amd64 libisl15 0.18-1 install ok installed libitm1:amd64 libitm1 6.3.0-18+deb9u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg-dev libjpeg-dev 1:1.5.1-2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:1.5.1-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u1 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed liblapack-dev liblapack-dev 3.7.0-2 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u4 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u4 install ok installed libllvm3.9:amd64 libllvm3.9 1:3.9.1-9 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b1 install ok installed liblsan0:amd64 liblsan0 6.3.0-18+deb9u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma-dev:amd64 liblzma-dev 5.2.2-1.2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpc3:amd64 libmpc3 1.0.3-1+b2 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpx2:amd64 libmpx2 6.3.0-18+deb9u1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncurses5-dev:amd64 libncurses5-dev 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.1.0-4+b1 install ok installed libnet-http-perl libnet-http-perl 6.12-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.80-1 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u1 install ok installed libnpth0:amd64 libnpth0 1.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu5 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu5 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre16-3:amd64 libpcre16-3 2:8.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.39-3 install ok installed libpcre32-3:amd64 libpcre32-3 2:8.39-3 install ok installed libpcrecpp0v5:amd64 libpcrecpp0v5 2:8.39-3 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng-dev:amd64 libpng-dev 1.6.28-1+deb9u1 install ok installed libpng-tools libpng-tools 1.6.28-1+deb9u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline-dev:amd64 libreadline-dev 7.0-3 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1+deb9u1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstdc++-6-dev:amd64 libstdc++-6-dev 6.3.0-18+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.6+dfsg-1+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b4 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb9u1 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.0+20161126-1+deb9u2 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.6-1+b1 install ok installed libtsan0:amd64 libtsan0 6.3.0-18+deb9u1 install ok installed libtxc-dxtn-s2tc:amd64 libtxc-dxtn-s2tc 1.0+git20151227-2 install ok installed libubsan0:amd64 libubsan0 6.3.0-18+deb9u1 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed liburi-perl liburi-perl 1.71-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libwww-perl libwww-perl 6.15-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-7 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.4-3+deb9u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.12-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.12-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.12-1 install ok installed libxcb-present0:amd64 libxcb-present0 1.12-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+deb9u2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b3 install ok installed libxml-parser-perl libxml-parser-perl 2.44-2+b1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.13-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u2 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.2-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.9.228-1 install ok installed login login 1:4.4-4.1 install ok installed lsb-base lsb-base 9.20161125 install ok installed make make 4.1-9.1 install ok installed manpages manpages 4.10-2 install ok installed manpages-dev manpages-dev 4.10-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed netbase netbase 5.4 install ok installed openssl openssl 1.1.0l-1~deb9u1 install ok installed passwd passwd 1:4.4-4.1 install ok installed patch patch 2.7.5-1+deb9u2 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed pinentry-curses pinentry-curses 1.0.0-2 install ok installed pkg-config pkg-config 0.29-4+b1 install ok installed publicsuffix publicsuffix 20190415.1030-0+deb9u1 install ok installed r-base-core r-base-core 3.3.3-1 install ok installed r-base-dev r-base-dev 3.3.3-1 install ok installed r-bioc-hilbertvis r-bioc-hilbertvis 1.32.0-1 install ok installed r-cran-boot r-cran-boot 1.3-18-2 install ok installed r-cran-class r-cran-class 7.3-14-1 install ok installed r-cran-cluster r-cran-cluster 2.0.5-1 install ok installed r-cran-codetools r-cran-codetools 0.2-15-1 install ok installed r-cran-foreign r-cran-foreign 0.8.67-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-15-2 install ok installed r-cran-lattice r-cran-lattice 0.20-34-1 install ok installed r-cran-mass r-cran-mass 7.3-45-1 install ok installed r-cran-matrix r-cran-matrix 1.2-7.1-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-16-1 install ok installed r-cran-nlme r-cran-nlme 3.1.129-1 install ok installed r-cran-nnet r-cran-nnet 7.3-12-1 install ok installed r-cran-rpart r-cran-rpart 4.1-10-2 install ok installed r-cran-spatial r-cran-spatial 7.3-11-1 install ok installed r-cran-survival r-cran-survival 2.40-1-1 install ok installed r-doc-html r-doc-html 3.3.3-1 install ok installed r-recommended r-recommended 3.3.3-1 install ok installed readline-common readline-common 7.0-3 install ok installed rename rename 0.20-4 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.8-1+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed tzdata tzdata 2020a-0+deb9u1 install ok installed ucf ucf 3.0036 install ok installed unzip unzip 6.0-21+deb9u2 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed x11-common x11-common 1:7.7+19 install ok installed x11-utils x11-utils 7.7+3+b1 install ok installed x11-xserver-utils x11-xserver-utils 7.7+7+b1 install ok installed xauth xauth 1:1.0.9-1+b2 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2+b1 install ok installed xdg-utils xdg-utils 1.1.1-1+deb9u2 install ok installed xml-core xml-core 0.17 install ok installed xz-utils xz-utils 5.2.2-1.2+b1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.8.dfsg-5 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'remove', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-6', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++-', 'g++-6', 'gcc', 'gcc-6', 'gfortran', 'gfortran-6', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'icu-devtools', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgdbm3:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm3.9:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstdc++-6-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-hilbertvis'] 0m51.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-6 dbus dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-6 gcc gcc-6 gfortran gfortran-6 gnupg gnupg-agent gnupg-l10n icu-devtools krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan3 libassuan0 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcurl3 libdatrie1 libdbus-1-3 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-6-dev libgdbm3 libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu57 libidn11 libidn2-0 libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libllvm3.9 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmpc3 libmpfr4 libmpx2 libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnpth0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpsl5 libquadmath0 libreadline-dev libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libtasn1-6 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libtxc-dxtn-s2tc libubsan0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev lsb-base make manpages manpages-dev netbase openssl patch perl perl-modules-5.24 perl-openssl-defaults pinentry-curses pkg-config publicsuffix r-base-core r-base-dev r-bioc-hilbertvis r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common rename sgml-base shared-mime-info tzdata ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 277 to remove and 0 not upgraded. After this operation, 711 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Removing autotools-dev (20161112.1) ... Removing r-base-dev (3.3.3-1) ... Removing build-essential (12.3) ... Removing g++ (4:6.3.0-4) ... Removing liblapack-dev (3.7.0-2) ... Removing libblas-dev (3.7.0-2) ... Removing gfortran (4:6.3.0-4) ... Removing gcc (4:6.3.0-4) ... Removing dpkg-dev (1.18.25) ... Removing bzip2 (1.0.6-8.1) ... Removing bzip2-doc (1.0.6-8.1) ... Removing r-recommended (3.3.3-1) ... Removing r-cran-rpart (4.1-10-2) ... Removing r-cran-survival (2.40-1-1) ... Removing r-cran-mgcv (1.8-16-1) ... Removing r-cran-matrix (1.2-7.1-1) ... Removing r-cran-spatial (7.3-11-1) ... Removing r-cran-nnet (7.3-12-1) ... Removing libnet-dbus-perl (1.1.0-4+b1) ... Removing libxml-twig-perl (1:3.50-1) ... Removing libxml-parser-perl (2.44-2+b1) ... Removing cdbs (0.4.150) ... Removing x11-xserver-utils (7.7+7+b1) ... Removing cpp (4:6.3.0-4) ... Removing dbus (1.10.32-0+deb9u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dirmngr (2.1.18-8~deb9u4) ... Removing fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing x11-utils (7.7+3+b1) ... Removing g++-6 (6.3.0-18+deb9u1) ... Removing gfortran-6 (6.3.0-18+deb9u1) ... Removing gnupg (2.1.18-8~deb9u4) ... Removing gnupg-agent (2.1.18-8~deb9u4) ... Removing gnupg-l10n (2.1.18-8~deb9u4) ... Removing libicu-dev (57.1-6+deb9u4) ... Removing icu-devtools (57.1-6+deb9u4) ... Removing krb5-locales (1.15-1+deb9u1) ... Removing libalgorithm-merge-perl (0.08-3) ... Removing libalgorithm-diff-xs-perl (0.04-4+b2) ... Removing libalgorithm-diff-perl (1.19.03-1) ... Removing libapparmor1:amd64 (2.11.0-3+deb9u2) ... Removing libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing pinentry-curses (1.0.0-2) ... Removing libassuan0:amd64 (2.4.3-2) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing r-cran-kernsmooth (2.23-15-2) ... Removing xauth (1:1.0.9-1+b2) ... Removing libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Removing libxcb-sync1:amd64 (1.12-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2) ... Removing libbz2-dev:amd64 (1.0.6-8.1) ... Removing libpng-dev:amd64 (1.6.28-1+deb9u1) ... Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Removing libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) ... Removing libpcre3-dev:amd64 (2:8.39-3) ... Removing libjpeg-dev (1:1.5.1-2) ... Removing libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Removing libc6-dev:amd64 (2.24-11+deb9u4) ... Removing libc-dev-bin (2.24-11+deb9u4) ... Removing libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Removing pkg-config (0.29-4+b1) ... Removing libdpkg-perl (1.18.25) ... Removing libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Removing libdrm-amdgpu1:amd64 (2.4.74-1) ... Removing libdrm-intel1:amd64 (2.4.74-1) ... Removing libdrm-nouveau2:amd64 (2.4.74-1) ... Removing libdrm-radeon1:amd64 (2.4.74-1) ... Removing libdrm2:amd64 (2.4.74-1) ... Removing libllvm3.9:amd64 (1:3.9.1-9) ... Removing libedit2:amd64 (3.1-20160903-3) ... Removing libelf1:amd64 (0.168-1) ... Removing libfakeroot:amd64 (1.21-3.1) ... Removing libfile-mimeinfo-perl (0.27-1) ... Removing shared-mime-info (1.8-1+deb9u1) ... Removing libfile-desktopentry-perl (0.22-1) ... Removing libfile-basedir-perl (0.07-1) ... Removing libfile-fcntllock-perl (0.22-3+b2) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing libfontenc1:amd64 (1:1.1.3-1+b2) ... Removing rename (0.20-4) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing libxml-xpathengine-perl (0.13-1) ... Removing r-cran-nlme (3.1.129-1) ... Removing r-cran-cluster (2.0.5-1) ... Removing libglapi-mesa:amd64 (13.0.6-1+b2) ... Removing libglib2.0-data (2.50.3-2+deb9u2) ... Removing libgpm2:amd64 (1.20.4-6.2+b1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Removing libmailtools-perl (2.18-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libipc-system-simple-perl (1.25-3) ... Removing libksba8:amd64 (1.3.5-2) ... Removing liblocale-gettext-perl (1.07-3+b1) ... Removing liblzma-dev:amd64 (5.2.2-1.2+b1) ... Removing libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Removing libnpth0:amd64 (1.3-1) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libpcre16-3:amd64 (2:8.39-3) ... Removing libpcre32-3:amd64 (2:8.39-3) ... Removing libpcrecpp0v5:amd64 (2:8.39-3) ... Removing libpng-tools (1.6.28-1+deb9u1) ... Removing libreadline-dev:amd64 (7.0-3) ... Removing libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Removing libsensors4:amd64 (1:3.4.0-4) ... Removing libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Removing libtext-iconv-perl (1.7-5+b4) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtinfo-dev:amd64 (6.0+20161126-1+deb9u2) ... Removing libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... Removing libx11-protocol-perl (0.56-7) ... Removing libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb-dri2-0:amd64 (1.12-1) ... Removing libxcb-dri3-0:amd64 (1.12-1) ... Removing libxcb-glx0:amd64 (1.12-1) ... Removing libxcb-present0:amd64 (1.12-1) ... Removing libxcb-shape0:amd64 (1.12-1) ... Removing libxcomposite1:amd64 (1:0.4.4-2) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Removing libxdamage1:amd64 (1:1.1.4-2+b3) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b3) ... Removing libxmuu1:amd64 (2:1.1.2-2) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxshmfence1:amd64 (1.2-1+b2) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing linux-libc-dev:amd64 (4.9.228-1) ... Removing make (4.1-9.1) ... Removing manpages-dev (4.10-2) ... Removing manpages (4.10-2) ... Removing patch (2.7.5-1+deb9u2) ... Removing publicsuffix (20190415.1030-0+deb9u1) ... Removing r-bioc-hilbertvis (1.32.0-1) ... Removing r-cran-boot (1.3-18-2) ... Removing r-cran-class (7.3-14-1) ... Removing r-cran-codetools (0.2-15-1) ... Removing r-cran-foreign (0.8.67-1) ... Removing r-cran-lattice (0.20-34-1) ... Removing r-cran-mass (7.3-45-1) ... Removing r-doc-html (3.3.3-1) ... Removing xml-core (0.17) ... Removing sgml-base (1.29) ... Removing xdg-user-dirs (0.15-2+b1) ... Removing xz-utils (5.2.2-1.2+b1) ... Removing gcc-6 (6.3.0-18+deb9u1) ... Removing binutils (2.28-5) ... Removing r-base-core (3.3.3-1) ... Removing cpp-6 (6.3.0-18+deb9u1) ... Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing libtk8.6:amd64 (8.6.6-1+b1) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing libcairo2:amd64 (1.14.8-1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-dejavu-core (2.37-1) ... Removing libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libasan3:amd64 (6.3.0-18+deb9u1) ... Removing libatomic1:amd64 (6.3.0-18+deb9u1) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libcc1-0:amd64 (6.3.0-18+deb9u1) ... Removing libcilkrts5:amd64 (6.3.0-18+deb9u1) ... Removing libcurl3:amd64 (7.52.1-5+deb9u10) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Removing libgnutls30:amd64 (3.5.8-5+deb9u5) ... Removing libp11-kit0:amd64 (0.23.3-2) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libhogweed4:amd64 (3.3-1+b2) ... Removing libmpc3:amd64 (1.0.3-1+b2) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libidn11:amd64 (1.33-1+deb9u1) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (0.16-1+deb9u1) ... Removing libisl15:amd64 (0.18-1) ... Removing libitm1:amd64 (6.3.0-18+deb9u1) ... Removing libtiff5:amd64 (4.0.8-2+deb9u5) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2) ... Removing libkrb5-3:amd64 (1.15-1+deb9u1) ... Removing libk5crypto3:amd64 (1.15-1+deb9u1) ... Removing libkrb5support0:amd64 (1.15-1+deb9u1) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing libldap-common (2.4.44+dfsg-5+deb9u4) ... Removing liblsan0:amd64 (6.3.0-18+deb9u1) ... Removing libmpx2:amd64 (6.3.0-18+deb9u1) ... Removing libnettle6:amd64 (3.3-1+b2) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Removing libpaper-utils (1.1.24+nmu5) ... Removing libpaper1:amd64 (1.1.24+nmu5) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libreadline7:amd64 (7.0-3) ... Removing libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Removing libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libssh2-1:amd64 (1.7.0-1+deb9u1) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Removing libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Removing libthai-data (0.1.26-1) ... Removing libtsan0:amd64 (6.3.0-18+deb9u1) ... Removing libubsan0:amd64 (6.3.0-18+deb9u1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing readline-common (7.0-3) ... Removing tzdata (2020a-0+deb9u1) ... Removing ucf (3.0036) ... Removing unzip (6.0-21+deb9u2) ... Removing xdg-utils (1.1.1-1+deb9u2) ... Removing zip (3.0-11+b1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libgmp10:amd64 (2:6.1.2+dfsg-1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (9.20161125) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libwww-perl (6.15-1) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-2) ... Removing libhtml-parser-perl (3.72-3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.044-1) ... Removing libnet-http-perl (6.12-1) ... Removing libnet-ssleay-perl (1.80-1) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.4) ... Removing ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.11-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing openssl (1.1.0l-1~deb9u1) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Removing libtimedate-perl (2.3000-2+deb9u1) ... Removing liburi-perl (1.71-1) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'remove', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-6', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++-', 'g++-6', 'gcc', 'gcc-6', 'gfortran', 'gfortran-6', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'icu-devtools', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgdbm3:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm3.9:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstdc++-6-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-hilbertvis'] 0m51.1s INFO: Running scripts post_remove 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_remove_exceptions'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_remove_exceptions'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--purge', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-6', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++', 'g++-6', 'gcc', 'gcc-6', 'gfortran', 'gfortran-6', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'icu-devtools', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgdbm3:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm3.9:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstdc++-6-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 0m51.9s DUMP: dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed (Reading database ... 4503 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cdbs which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-6 which isn't installed Purging configuration files for dbus (1.10.32-0+deb9u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory Purging configuration files for dirmngr (2.1.18-8~deb9u4) ... Purging configuration files for dpkg-dev (1.18.25) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed Purging configuration files for fontconfig (2.11.0-6.7+b1) ... Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-6 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-6 which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-6 which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.1.18-8~deb9u4) ... dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove icu-devtools which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libasan3 which isn't installed dpkg: warning: ignoring request to remove libassuan0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas-dev which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcilkrts5 which isn't installed dpkg: warning: ignoring request to remove libcurl3 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed Purging configuration files for libfakeroot:amd64 (1.21-3.1) ... dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-desktopentry-perl which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-mimeinfo-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgcc-6-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgfortran-6-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... dpkg: warning: ignoring request to remove libgl1-mesa-glx which isn't installed dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgmp10 which isn't installed dpkg: warning: ignoring request to remove libgnutls30 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhogweed4 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu-dev which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libipc-system-simple-perl which isn't installed dpkg: warning: ignoring request to remove libisl15 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libksba8 which isn't installed dpkg: warning: ignoring request to remove liblapack-dev which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.44+dfsg-5+deb9u4) ... dpkg: warning: ignoring request to remove libllvm3.9 which isn't installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove liblzma-dev which isn't installed dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libmpx2 which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libncurses5-dev which isn't installed dpkg: warning: ignoring request to remove libnet-dbus-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnettle6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnpth0 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.24+nmu5) ... dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre16-3 which isn't installed dpkg: warning: ignoring request to remove libpcre3-dev which isn't installed dpkg: warning: ignoring request to remove libpcre32-3 which isn't installed dpkg: warning: ignoring request to remove libpcrecpp0v5 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng-dev which isn't installed dpkg: warning: ignoring request to remove libpng-tools which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline-dev which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors4:amd64 (1:3.4.0-4) ... dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u1) ... dpkg: warning: ignoring request to remove libstdc++-6-dev which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtext-iconv-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtinfo-dev which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libtxc-dxtn-s2tc which isn't installed dpkg: warning: ignoring request to remove libubsan0 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxv1 which isn't installed dpkg: warning: ignoring request to remove libxxf86dga1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for netbase (5.4) ... Purging configuration files for openssl (1.1.0l-1~deb9u1) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.24.1-3+deb9u7) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for pkg-config (0.29-4+b1) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for r-base-core (3.3.3-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed Purging configuration files for readline-common (7.0-3) ... dpkg: warning: ignoring request to remove rename which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.8-1+deb9u1) ... Purging configuration files for tzdata (2020a-0+deb9u1) ... Purging configuration files for ucf (3.0036) ... Purging configuration files for unzip (6.0-21+deb9u2) ... Purging configuration files for x11-common (1:7.7+19) ... Purging configuration files for x11-utils (7.7+3+b1) ... Purging configuration files for x11-xserver-utils (7.7+7+b1) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.15-2+b1) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xml-core (0.17) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--purge', 'autotools-dev', 'binutils', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cdbs', 'cpp', 'cpp-6', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'g++', 'g++-6', 'gcc', 'gcc-6', 'gfortran', 'gfortran-6', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'icu-devtools', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libblas-common', 'libblas-dev', 'libblas3', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcurl3:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfakeroot:amd64', 'libffi6:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgdbm3:amd64', 'libgfortran-6-dev:amd64', 'libgfortran3:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm3.9:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstdc++-6-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'make', 'manpages', 'manpages-dev', 'netbase', 'openssl', 'patch', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--purge', 'r-bioc-hilbertvis'] 0m51.9s DUMP: dpkg: warning: ignoring request to remove r-bioc-hilbertvis which isn't installed 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--purge', 'r-bioc-hilbertvis'] 0m51.9s INFO: Running scripts post_purge 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_purge_exceptions'] 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_purge_exceptions'] 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--purge', '--pending'] 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--purge', '--pending'] 0m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--remove', '--pending'] 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg', '--remove', '--pending'] 0m52.0s INFO: Running scripts post_test 0m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_test_exceptions'] 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'tmp/scripts/post_test_exceptions'] 0m52.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m52.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m52.5s DEBUG: No broken symlinks as far as we can find. 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-divert', '--list'] 0m52.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'dpkg-divert', '--list'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'clean'] 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr', 'apt-get', 'clean'] 0m52.6s DEBUG: Recording chroot state 0m52.9s INFO: PASS: Installation and purging test. 0m53.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/shm'] 0m53.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/shm'] 0m53.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/console'] 0m53.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/console'] 0m53.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/ptmx'] 0m53.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/ptmx'] 0m53.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/pts'] 0m53.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/dev/pts'] 0m53.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/proc'] 0m53.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr/proc'] 0m53.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m53.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppe_xvjpr'] 0m53.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppe_xvjpr 0m53.3s INFO: PASS: All tests. 0m53.3s INFO: piuparts run ends. ret=0 End: 2023-03-15 23:08:43 GMT