Start: 2023-03-07 07:56:14 GMT Package: ruby-crb-blast Version: 0.6.8-1 Installed-Size: 51 Maintainer: Debian Ruby Extras Maintainers Architecture: all Depends: ncbi-blast+, ruby | ruby-interpreter, ruby-bio, ruby-fixwhich, ruby-threach, ruby-trollop (>= 2.0) Description: Run conditional reciprocal best blast Homepage: https://github.com/cboursnell/crb-blast Description-md5: b8694674f553b0ae33fd1ec67da3861a Ruby-Versions: all Section: ruby Priority: optional Filename: pool/main/r/ruby-crb-blast/ruby-crb-blast_0.6.8-1_all.deb Size: 11432 MD5sum: 89a748f91e8dfd16ac14d2e55822a6de SHA256: 19097b0ba0435bb6194c22d8ca8a445540b578b7995d24d7b45e2ad99417da21 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt ruby-crb-blast=0.6.8-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt ruby-crb-blast=0.6.8-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpmvoge6xk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpmvoge6xk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpmvoge6xk/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'update'] 0m2.4s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'update'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s INFO: Running scripts post_setup 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'clean'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'clean'] 0m5.2s DEBUG: Recording chroot state 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-divert', '--list'] 0m5.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-divert', '--list'] 0m5.6s INFO: Running scripts is_testable 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s INFO: apt-cache does not know about any of the requested packages 0m5.6s INFO: Running scripts pre_test 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_test_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_test_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_test_root_password'] 0m5.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_test_root_password'] 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m6.0s DEBUG: No broken symlinks as far as we can find. 0m6.0s INFO: Running scripts pre_install 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_exceptions'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_extras'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m6.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m6.7s DEBUG: No broken symlinks as far as we can find. 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m7.4s DUMP: ruby-crb-blast: Installed: (none) Candidate: 0.6.8-1 Version table: 0.6.8-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', '-y', 'install', 'ruby-crb-blast=0.6.8-1'] 0m47.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: amap-align blast2 blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libconvert-binhex-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmime-tools-perl libmpfr4 libncurses5 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libossp-uuid-perl libossp-uuid16 libp11-kit0 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libruby2.3 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl1.0.2 libssl1.1 libtask-weaken-perl libtasn1-6 libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft med-config menu mime-support mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase openssl perl perl-modules-5.24 perl-openssl-defaults poa prank probcons proda python python-minimal python2.7 python2.7-minimal rake readline-common rename ruby ruby-bio ruby-did-you-mean ruby-facade ruby-fixwhich ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-test-unit ruby-threach ruby-trollop ruby2.3 rubygems-integration sgml-base shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xml-core xz-utils zip Suggested packages: blends-doc bzip2-doc clustalx seaview wise gawk-doc hmmer-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl gnutls-bin gpm libdata-dump-perl libcrypt-ssleay-perl uuid libapache2-mod-perl2 libmime-lite-perl libnet-jabber-perl libauthen-ntlm-perl menu-l10n gksu | kde-runtime | ktsuss mustang-testdata perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make probcons-extra python-doc python-tk python2.7-doc binutils binfmt-support readline-doc ri ruby-dev emboss bundler sgml-base-doc boxshade t-coffee-examples pymol rasmol debhelper The following NEW packages will be installed: amap-align blast2 blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libconvert-binhex-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmime-tools-perl libmpfr4 libncurses5 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libossp-uuid-perl libossp-uuid16 libp11-kit0 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libruby2.3 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl1.0.2 libssl1.1 libtask-weaken-perl libtasn1-6 libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft med-config menu mime-support mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase openssl perl perl-modules-5.24 perl-openssl-defaults poa prank probcons proda python python-minimal python2.7 python2.7-minimal rake readline-common rename ruby ruby-bio ruby-crb-blast ruby-did-you-mean ruby-facade ruby-fixwhich ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-test-unit ruby-threach ruby-trollop ruby2.3 rubygems-integration sgml-base shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xml-core xz-utils zip 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 71.1 MB of archives. After this operation, 305 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 fonts-lato all 2.0-1 [2684 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 amap-align amd64 2.2-6 [129 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:47 http://deb.debian.org/debian stretch/main amd64 blast2 all 1:2.6.0-1 [9084 B] Get:48 http://deb.debian.org/debian stretch/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 blends-common all 0.6.96 [23.3 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 clustalo amd64 1.2.4-1 [263 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 clustalw amd64 2.1+lgpl-5 [286 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 dialign-tx-data all 1.0.2-9 [869 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 dialign-tx amd64 1.0.2-9 [85.7 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 exonerate amd64 2.4.0-2 [1476 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 mummer amd64 3.23+dfsg-2 [809 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 fsa amd64 1.15.9+dfsg-3 [753 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 javascript-common all 11 [6120 B] Get:64 http://deb.debian.org/debian stretch/main amd64 kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libclass-inspector-perl all 1.31-1 [18.7 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libfcgi-perl amd64 0.78-2 [38.2 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:91 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:92 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libio-stringy-perl all 2.111-2 [61.2 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:100 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:101 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libmime-tools-perl all 5.508-1 [212 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libtask-weaken-perl all 1.04-1 [7990 B] Get:107 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libsoap-lite-perl all 1.20-1 [259 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 lynx-common all 2.8.9dev11-1 [1098 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 mustang amd64 3.2.3-1 [113 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 probcons amd64 1.12-11 [107 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 proda amd64 1.0-10 [60.1 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 rubygems-integration all 1.11 [4994 B] Get:126 http://deb.debian.org/debian stretch/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:130 http://deb.debian.org/debian stretch/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 rake all 10.5.0-2+deb9u1 [49.7 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 ruby-bio all 1.5.0-2 [701 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 ruby-facade all 1.0.7-1 [7868 B] Get:138 http://deb.debian.org/debian stretch/main amd64 ruby-pathname2 all 1.8.0-1 [17.0 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 ruby-fixwhich all 1.0.2-1 [4014 B] Get:140 http://deb.debian.org/debian stretch/main amd64 ruby-threach all 0.2.0-1 [5020 B] Get:141 http://deb.debian.org/debian stretch/main amd64 ruby-trollop all 2.0-2 [16.8 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 ruby-crb-blast all 0.6.8-1 [11.4 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 sim4 amd64 0.0.20121010-4 [396 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 tm-align amd64 20160521+dfsg-2 [868 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 lynx amd64 2.8.9dev11-1 [632 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 med-config all 3.0.1 [17.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.1 MB in 15s (4513 kB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../01-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. 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Selecting previously unselected package libsoap-lite-perl. Preparing to unpack .../085-libsoap-lite-perl_1.20-1_all.deb ... Unpacking libsoap-lite-perl (1.20-1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../086-libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../087-libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../088-libxml-sax-perl_0.99+dfsg-2_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../089-libxml-libxml-perl_2.0128+dfsg-1+deb9u1_amd64.deb ... Unpacking libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... Selecting previously unselected package libxml-sax-expat-perl. Preparing to unpack .../090-libxml-sax-expat-perl_0.40-2_all.deb ... Unpacking libxml-sax-expat-perl (0.40-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../091-libxml-simple-perl_2.22-1_all.deb ... Unpacking libxml-simple-perl (2.22-1) ... Selecting previously unselected package libxmlrpc-lite-perl. Preparing to unpack .../092-libxmlrpc-lite-perl_0.717-1_all.deb ... Unpacking libxmlrpc-lite-perl (0.717-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../093-libyaml-0-2_0.1.7-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.7-2) ... Selecting previously unselected package lynx-common. Preparing to unpack .../094-lynx-common_2.8.9dev11-1_all.deb ... Unpacking lynx-common (2.8.9dev11-1) ... Selecting previously unselected package mafft. Preparing to unpack .../095-mafft_7.307-1_amd64.deb ... Unpacking mafft (7.307-1) ... Selecting previously unselected package muscle. Preparing to unpack .../096-muscle_1%3a3.8.31+dfsg-2_amd64.deb ... Unpacking muscle (1:3.8.31+dfsg-2) ... Selecting previously unselected package mustang. Preparing to unpack .../097-mustang_3.2.3-1_amd64.deb ... Unpacking mustang (3.2.3-1) ... Selecting previously unselected package poa. Preparing to unpack .../098-poa_2.0+20060928-4+b1_amd64.deb ... Unpacking poa (2.0+20060928-4+b1) ... Selecting previously unselected package prank. Preparing to unpack .../099-prank_0.0.150803-2_amd64.deb ... Unpacking prank (0.0.150803-2) ... Selecting previously unselected package probcons. Preparing to unpack .../100-probcons_1.12-11_amd64.deb ... Unpacking probcons (1.12-11) ... Selecting previously unselected package proda. Preparing to unpack .../101-proda_1.0-10_amd64.deb ... Unpacking proda (1.0-10) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../102-rubygems-integration_1.11_all.deb ... Unpacking rubygems-integration (1.11) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../103-ruby-did-you-mean_1.0.0-2_all.deb ... Unpacking ruby-did-you-mean (1.0.0-2) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../104-ruby-minitest_5.9.0-1_all.deb ... Unpacking ruby-minitest (5.9.0-1) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../105-ruby-net-telnet_0.1.1-2_all.deb ... Unpacking ruby-net-telnet (0.1.1-2) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../106-ruby-power-assert_0.3.0-1_all.deb ... Unpacking ruby-power-assert (0.3.0-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../107-ruby-test-unit_3.1.7-2_all.deb ... Unpacking ruby-test-unit (3.1.7-2) ... Selecting previously unselected package libruby2.3:amd64. Preparing to unpack .../108-libruby2.3_2.3.3-1+deb9u8_amd64.deb ... Unpacking libruby2.3:amd64 (2.3.3-1+deb9u8) ... Selecting previously unselected package ruby2.3. Preparing to unpack .../109-ruby2.3_2.3.3-1+deb9u8_amd64.deb ... Unpacking ruby2.3 (2.3.3-1+deb9u8) ... Selecting previously unselected package ruby. Preparing to unpack .../110-ruby_1%3a2.3.3_amd64.deb ... Unpacking ruby (1:2.3.3) ... Selecting previously unselected package rake. Preparing to unpack .../111-rake_10.5.0-2+deb9u1_all.deb ... Unpacking rake (10.5.0-2+deb9u1) ... Selecting previously unselected package rename. Preparing to unpack .../112-rename_0.20-4_all.deb ... Unpacking rename (0.20-4) ... Selecting previously unselected package ruby-bio. Preparing to unpack .../113-ruby-bio_1.5.0-2_all.deb ... Unpacking ruby-bio (1.5.0-2) ... Selecting previously unselected package ruby-facade. Preparing to unpack .../114-ruby-facade_1.0.7-1_all.deb ... Unpacking ruby-facade (1.0.7-1) ... Selecting previously unselected package ruby-pathname2. Preparing to unpack .../115-ruby-pathname2_1.8.0-1_all.deb ... Unpacking ruby-pathname2 (1.8.0-1) ... Selecting previously unselected package ruby-fixwhich. Preparing to unpack .../116-ruby-fixwhich_1.0.2-1_all.deb ... Unpacking ruby-fixwhich (1.0.2-1) ... Selecting previously unselected package ruby-threach. Preparing to unpack .../117-ruby-threach_0.2.0-1_all.deb ... Unpacking ruby-threach (0.2.0-1) ... Selecting previously unselected package ruby-trollop. Preparing to unpack .../118-ruby-trollop_2.0-2_all.deb ... Unpacking ruby-trollop (2.0-2) ... Selecting previously unselected package ruby-crb-blast. Preparing to unpack .../119-ruby-crb-blast_0.6.8-1_all.deb ... Unpacking ruby-crb-blast (0.6.8-1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../120-shared-mime-info_1.8-1+deb9u1_amd64.deb ... Unpacking shared-mime-info (1.8-1+deb9u1) ... Selecting previously unselected package sim4. Preparing to unpack .../121-sim4_0.0.20121010-4_amd64.deb ... Unpacking sim4 (0.0.20121010-4) ... Selecting previously unselected package t-coffee. Preparing to unpack .../122-t-coffee_11.00.8cbe486-5_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-5) ... Selecting previously unselected package tm-align. Preparing to unpack .../123-tm-align_20160521+dfsg-2_amd64.deb ... Unpacking tm-align (20160521+dfsg-2) ... Selecting previously unselected package unzip. Preparing to unpack .../124-unzip_6.0-21+deb9u2_amd64.deb ... Unpacking unzip (6.0-21+deb9u2) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../125-xdg-user-dirs_0.15-2+b1_amd64.deb ... Unpacking xdg-user-dirs (0.15-2+b1) ... Selecting previously unselected package xml-core. Preparing to unpack .../126-xml-core_0.17_all.deb ... Unpacking xml-core (0.17) ... Selecting previously unselected package zip. Preparing to unpack .../127-zip_3.0-11+b1_amd64.deb ... Unpacking zip (3.0-11+b1) ... Selecting previously unselected package lynx. Preparing to unpack .../128-lynx_2.8.9dev11-1_amd64.deb ... Unpacking lynx (2.8.9dev11-1) ... Selecting previously unselected package med-config. Preparing to unpack .../129-med-config_3.0.1_all.deb ... Unpacking med-config (3.0.1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libargtable2-0 (13-1) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up prank (0.0.150803-2) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up kalign (1:2.03+20110620-3) ... Setting up clustalo (1.2.4-1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libdivsufsort3:amd64 (2.0.1-2) ... Setting up mime-support (3.60) ... Setting up t-coffee (11.00.8cbe486-5) ... Setting up libgpm2:amd64 (1.20.4-6.2+b1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up probcons (1.12-11) ... Setting up unzip (6.0-21+deb9u2) ... Setting up menu (2.1.47+b1) ... Setting up sgml-base (1.29) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up zip (3.0-11+b1) ... Setting up tm-align (20160521+dfsg-2) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up fonts-lato (2.0-1) ... Setting up sim4 (0.0.20121010-4) ... Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up amap-align (2.2-6) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up proda (1.0-10) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liburi-perl (1.71-1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up openssl (1.1.0l-1~deb9u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libnet-http-perl (6.12-1) ... Setting up poa (2.0+20060928-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up xml-core (0.17) ... Setting up javascript-common (11) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up ruby-minitest (5.9.0-1) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up mustang (3.2.3-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libfcgi-perl (0.78-2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up netbase (5.4) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up mafft (7.307-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up perl-openssl-defaults:amd64 (3) ... Setting up mummer (3.23+dfsg-2) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up dialign-tx (1.0.2-9) ... Setting up libio-html-perl (1.001-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up exonerate (2.4.0-2) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up file (1:5.30-1+deb9u3) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up rubygems-integration (1.11) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up python (2.7.13-2) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-date-perl (6.02-1) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-negotiate-perl (6.00-2) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libxml-simple-perl (2.22-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up blast2 (1:2.6.0-1) ... Setting up libmime-tools-perl (5.508-1) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.6.96) ... Setting up med-config (3.0.1) ... Adding group `med' (GID 150) ... Done. Setting up rake (10.5.0-2+deb9u1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u8) ... Setting up libwww-perl (6.15-1) ... Setting up ruby2.3 (2.3.3-1+deb9u8) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up ruby (1:2.3.3) ... Setting up ruby-threach (0.2.0-1) ... Setting up ruby-facade (1.0.7-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libsoap-lite-perl (1.20-1) ... Setting up ruby-pathname2 (1.8.0-1) ... Setting up ruby-bio (1.5.0-2) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up ruby-trollop (2.0-2) ... Setting up ruby-fixwhich (1.0.2-1) ... Setting up ruby-crb-blast (0.6.8-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', '-y', 'install', 'ruby-crb-blast=0.6.8-1'] 0m47.0s INFO: Running scripts post_install 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_install_exceptions'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_install_exceptions'] 0m47.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m47.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m48.5s DEBUG: No broken symlinks as far as we can find. 0m49.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', '-ac', '--ignore-obsolete'] 0m51.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', '-ac', '--ignore-obsolete'] 0m51.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m51.3s DUMP: 0.15.6 0m51.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m51.3s INFO: Running adequate version 0.15.6 now. 0m51.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'ruby-crb-blast'] 0m51.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'ruby-crb-blast'] 0m51.4s INFO: Running scripts pre_remove 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m53.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m53.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_exceptions'] 0m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/pre_remove_exceptions'] 0m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m53.6s DUMP: install ok installed adduser adduser 3.115 install ok installed amap-align amap-align 2.2-6 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed blast2 blast2 1:2.6.0-1 install ok installed blends-common blends-common 0.6.96 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed bzip2 bzip2 1.0.6-8.1 install ok installed ca-certificates ca-certificates 20200601~deb9u1 install ok installed clustalo clustalo 1.2.4-1 install ok installed clustalw clustalw 2.1+lgpl-5 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed dialign-tx dialign-tx 1.0.2-9 install ok installed dialign-tx-data dialign-tx-data 1.0.2-9 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed exonerate exonerate 2.4.0-2 install ok installed file file 1:5.30-1+deb9u3 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fonts-lato fonts-lato 2.0-1 install ok installed fsa fsa 1.15.9+dfsg-3 install ok installed gawk gawk 1:4.1.4+dfsg-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hmmer hmmer 3.1b2+dfsg-5 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-3 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libclass-inspector-perl libclass-inspector-perl 1.31-1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-2 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libfcgi-perl libfcgi-perl 0.78-2 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u2 install ok installed libglib2.0-data libglib2.0-data 2.50.3-2+deb9u2 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgpm2:amd64 libgpm2 1.20.4-6.2+b1 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.11-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.044-1 install ok installed libio-stringy-perl libio-stringy-perl 2.111-2 install ok installed libjs-jquery libjs-jquery 3.1.1-2+deb9u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmagic-mgc libmagic-mgc 1:5.30-1+deb9u3 install ok installed libmagic1:amd64 libmagic1 1:5.30-1+deb9u3 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmime-tools-perl libmime-tools-perl 5.508-1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnet-http-perl libnet-http-perl 6.12-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.80-1 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b4 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u3 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u8 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.10-5 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.20-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtask-weaken-perl libtask-weaken-perl 1.04-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb9u1 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed liburi-perl liburi-perl 1.71-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libwww-perl libwww-perl 6.15-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0128+dfsg-1+deb9u1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-2+b1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.40-2 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-simple-perl libxml-simple-perl 2.22-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u2 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.1.7-2 install ok installed login login 1:4.4-4.1 install ok installed lynx lynx 2.8.9dev11-1 install ok installed lynx-common lynx-common 2.8.9dev11-1 install ok installed mafft mafft 7.307-1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed med-config med-config 3.0.1 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed mummer mummer 3.23+dfsg-2 install ok installed muscle muscle 1:3.8.31+dfsg-2 install ok installed mustang mustang 3.2.3-1 install ok installed ncbi-blast+ ncbi-blast+ 2.6.0-1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.6.0-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed netbase netbase 5.4 install ok installed openssl openssl 1.1.0l-1~deb9u1 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed poa poa 2.0+20060928-4+b1 install ok installed prank prank 0.0.150803-2 install ok installed probcons probcons 1.12-11 install ok installed proda proda 1.0-10 install ok installed python python 2.7.13-2 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python2.7 python2.7 2.7.13-2+deb9u3 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u3 install ok installed rake rake 10.5.0-2+deb9u1 install ok installed readline-common readline-common 7.0-3 install ok installed rename rename 0.20-4 install ok installed ruby ruby 1:2.3.3 install ok installed ruby-bio ruby-bio 1.5.0-2 install ok installed ruby-crb-blast ruby-crb-blast 0.6.8-1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.0.0-2 install ok installed ruby-facade ruby-facade 1.0.7-1 install ok installed ruby-fixwhich ruby-fixwhich 1.0.2-1 install ok installed ruby-minitest ruby-minitest 5.9.0-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-pathname2 ruby-pathname2 1.8.0-1 install ok installed ruby-power-assert ruby-power-assert 0.3.0-1 install ok installed ruby-test-unit ruby-test-unit 3.1.7-2 install ok installed ruby-threach ruby-threach 0.2.0-1 install ok installed ruby-trollop ruby-trollop 2.0-2 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u8 install ok installed rubygems-integration rubygems-integration 1.11 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.8-1+deb9u1 install ok installed sim4 sim4 0.0.20121010-4 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed t-coffee t-coffee 11.00.8cbe486-5 install ok installed tar tar 1.29b-1.1 install ok installed tm-align tm-align 20160521+dfsg-2 install ok installed ucf ucf 3.0036 install ok installed unzip unzip 6.0-21+deb9u2 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed xdg-user-dirs xdg-user-dirs 0.15-2+b1 install ok installed xml-core xml-core 0.17 install ok installed xz-utils xz-utils 5.2.2-1.2+b1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'remove', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmime-tools-perl', 'libmpfr4:amd64', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby2.3', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'ruby-crb-blast'] 0m56.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: amap-align blast2 blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libconvert-binhex-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmime-tools-perl libmpfr4 libncurses5 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libossp-uuid-perl libossp-uuid16 libp11-kit0 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libruby2.3 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl1.0.2 libssl1.1 libtask-weaken-perl libtasn1-6 libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft med-config menu mime-support mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase openssl perl perl-modules-5.24 perl-openssl-defaults poa prank probcons proda python python-minimal python2.7 python2.7-minimal rake readline-common rename ruby ruby-bio ruby-crb-blast ruby-did-you-mean ruby-facade ruby-fixwhich ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-test-unit ruby-threach ruby-trollop ruby2.3 rubygems-integration sgml-base shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xml-core xz-utils zip 0 upgraded, 0 newly installed, 152 to remove and 0 not upgraded. After this operation, 305 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12727 files and directories currently installed.) Removing amap-align (2.2-6) ... Removing blast2 (1:2.6.0-1) ... Removing med-config (3.0.1) ... Removing blends-common (0.6.96) ... Removing bzip2 (1.0.6-8.1) ... Removing ruby-crb-blast (0.6.8-1) ... Removing ruby-trollop (2.0-2) ... Removing ruby-threach (0.2.0-1) ... Removing libxml-simple-perl (2.22-1) ... Removing libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing clustalo (1.2.4-1) ... Removing clustalw (2.1+lgpl-5) ... Removing dialign-tx (1.0.2-9) ... Removing dialign-tx-data (1.0.2-9) ... Removing fsa (1.15.9+dfsg-3) ... Removing exonerate (2.4.0-2) ... Removing file (1:5.30-1+deb9u3) ... Removing fonts-lato (2.0-1) ... Removing mummer (3.23+dfsg-2) ... Removing gawk (1:4.1.4+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing hmmer (3.1b2+dfsg-5) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-3) ... Removing libargtable2-0 (13-1) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing lynx (2.8.9dev11-1) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libxmlrpc-lite-perl (0.717-1) ... Removing libsoap-lite-perl (1.20-1) ... Removing libclass-inspector-perl (1.31-1) ... Removing libmime-tools-perl (5.508-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libdivsufsort3:amd64 (2.0.1-2) ... Removing ncbi-blast+-legacy (2.6.0-1) ... Removing ncbi-blast+ (2.6.0-1) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u3) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Removing libfcgi-perl (0.78-2) ... Removing libgnutls30:amd64 (3.5.8-5+deb9u5) ... Removing libp11-kit0:amd64 (0.23.3-2) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing rename (0.20-4) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Removing mafft (7.307-1) ... Removing libossp-uuid-perl (1.6.2-1.5+b4) ... Removing tm-align (20160521+dfsg-2) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing shared-mime-info (1.8-1+deb9u1) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Removing libglib2.0-data (2.50.3-2+deb9u2) ... Removing libhogweed4:amd64 (3.3-1+b2) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgpm2:amd64 (1.20.4-6.2+b1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libidn11:amd64 (1.33-1+deb9u1) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libmailtools-perl (2.18-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-stringy-perl (2.111-2) ... Removing libjs-jquery (3.1.1-2+deb9u1) ... Removing libmagic1:amd64 (1:5.30-1+deb9u3) ... Removing libmagic-mgc (1:5.30-1+deb9u3) ... Removing libnettle6:amd64 (3.3-1+b2) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u3) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libsigsegv2:amd64 (2.10-5) ... Removing libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Removing libtask-weaken-perl (1.04-1) ... Removing libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing lynx-common (2.8.9dev11-1) ... Removing menu (2.1.47+b1) ... Removing mime-support (3.60) ... Removing muscle (1:3.8.31+dfsg-2) ... Removing mustang (3.2.3-1) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Removing poa (2.0+20060928-4+b1) ... Removing prank (0.0.150803-2) ... Removing probcons (1.12-11) ... Removing proda (1.0-10) ... Removing ruby-bio (1.5.0-2) ... Removing ruby-fixwhich (1.0.2-1) ... Removing ruby-pathname2 (1.8.0-1) ... Removing ruby-facade (1.0.7-1) ... Removing xml-core (0.17) ... Removing sgml-base (1.29) ... Removing sim4 (0.0.20121010-4) ... Removing t-coffee (11.00.8cbe486-5) ... Removing ucf (3.0036) ... Removing unzip (6.0-21+deb9u2) ... Removing xdg-user-dirs (0.15-2+b1) ... Removing xz-utils (5.2.2-1.2+b1) ... Removing zip (3.0-11+b1) ... Removing libxml-parser-perl (2.44-2+b1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.044-1) ... Removing libnet-ssleay-perl (1.80-1) ... Removing perl-openssl-defaults:amd64 (3) ... Removing rake (10.5.0-2+deb9u1) ... Removing ruby (1:2.3.3) ... Removing ruby2.3 (2.3.3-1+deb9u8) ... Removing rubygems-integration (1.11) ... Removing libwww-perl (6.15-1) ... Removing ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.00-2) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u8) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libfile-listing-perl (6.04-1) ... Removing libgmp10:amd64 (2:6.1.2+dfsg-1) ... Removing libhtml-tree-perl (5.03-2) ... Removing libhtml-parser-perl (3.72-3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Removing libnet-http-perl (6.12-1) ... Removing libreadline7:amd64 (7.0-3) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing openssl (1.1.0l-1~deb9u1) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing libyaml-0-2:amd64 (0.1.7-2) ... Removing netbase (5.4) ... Removing readline-common (7.0-3) ... Removing ruby-did-you-mean (1.0.0-2) ... Removing ruby-minitest (5.9.0-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.1.7-2) ... Removing ruby-power-assert (0.3.0-1) ... Removing libhttp-message-perl (6.11-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2+deb9u1) ... Removing liburi-perl (1.71-1) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'remove', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmime-tools-perl', 'libmpfr4:amd64', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby2.3', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'ruby-crb-blast'] 0m56.7s INFO: Running scripts post_remove 0m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_remove_exceptions'] 0m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_remove_exceptions'] 0m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--purge', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmime-tools-perl', 'libmpfr4:amd64', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby2.3', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 0m57.4s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed (Reading database ... 4465 files and directories currently installed.) Purging configuration files for blends-common (0.6.96) ... dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-5) ... dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove gawk which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed Purging configuration files for libdivsufsort3:amd64 (2.0.1-2) ... dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgmp10 which isn't installed dpkg: warning: ignoring request to remove libgnutls30 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libhogweed4 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.30-1+deb9u3) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnettle6 which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libruby2.3 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u1) ... dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for lynx (2.8.9dev11-1) ... Purging configuration files for lynx-common (2.8.9dev11-1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for med-config (3.0.1) ... Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for mime-support (3.60) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Purging configuration files for netbase (5.4) ... Purging configuration files for openssl (1.1.0l-1~deb9u1) ... Purging configuration files for perl (5.24.1-3+deb9u7) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed dpkg: warning: ignoring request to remove prank which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove rake which isn't installed Purging configuration files for readline-common (7.0-3) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-bio which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-facade which isn't installed dpkg: warning: ignoring request to remove ruby-fixwhich which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-pathname2 which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-threach which isn't installed dpkg: warning: ignoring request to remove ruby-trollop which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.8-1+deb9u1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0036) ... Purging configuration files for unzip (6.0-21+deb9u2) ... Purging configuration files for xdg-user-dirs (0.15-2+b1) ... Purging configuration files for xml-core (0.17) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--purge', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhogweed4:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmime-tools-perl', 'libmpfr4:amd64', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtask-weaken-perl', 'libtasn1-6:amd64', 'libtimedate-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby2.3', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--purge', 'ruby-crb-blast'] 0m57.4s DUMP: dpkg: warning: ignoring request to remove ruby-crb-blast which isn't installed 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--purge', 'ruby-crb-blast'] 0m57.4s INFO: Running scripts post_purge 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_purge_exceptions'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_purge_exceptions'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--purge', '--pending'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--purge', '--pending'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--remove', '--pending'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg', '--remove', '--pending'] 0m57.4s INFO: Running scripts post_test 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_test_exceptions'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'tmp/scripts/post_test_exceptions'] 0m57.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m57.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m58.2s DEBUG: No broken symlinks as far as we can find. 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-divert', '--list'] 0m58.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'dpkg-divert', '--list'] 0m58.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'clean'] 0m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk', 'apt-get', 'clean'] 0m58.3s DEBUG: Recording chroot state 0m58.8s INFO: PASS: Installation and purging test. 0m59.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/shm'] 0m59.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/shm'] 0m59.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/console'] 0m59.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/console'] 0m59.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/ptmx'] 0m59.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/ptmx'] 0m59.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/pts'] 0m59.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/dev/pts'] 0m59.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/proc'] 0m59.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk/proc'] 0m59.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m59.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmvoge6xk'] 0m59.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpmvoge6xk 0m59.2s INFO: PASS: All tests. 0m59.2s INFO: piuparts run ends. ret=0 End: 2023-03-07 07:57:14 GMT