Start: 2023-02-18 13:36:57 GMT Package: gromacs-dev Source: gromacs Version: 2016.1-2 Installed-Size: 41 Maintainer: Debichem Team Architecture: amd64 Depends: libgromacs-dev Description: Dummy package for libgromacs-dev Homepage: http://www.gromacs.org/ Description-md5: eecef282d47bf2e250d545558097f3f7 Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, role::devel-lib Section: devel Priority: extra Filename: pool/main/g/gromacs/gromacs-dev_2016.1-2_amd64.deb Size: 19350 MD5sum: cff5f2819e83daa34327aba3a448dabf SHA256: f229b3843b55b2dbb9d060f8db6d888a0e17e96b680000cc273b217743f5bd3e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt gromacs-dev=2016.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt gromacs-dev=2016.1-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpjpzwdtxb 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpjpzwdtxb 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/proc'] 0m1.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/proc'] 0m1.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/pts'] 0m1.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/pts'] 0m1.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/ptmx'] 0m1.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/ptmx'] 0m1.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/console'] 0m1.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/console'] 0m1.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/shm'] 0m1.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/shm'] 0m1.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.2s DEBUG: Created policy-rc.d and chmodded it. 0m1.2s DEBUG: Created resolv.conf. 0m1.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpjpzwdtxb/tmp/scripts/ 0m1.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpjpzwdtxb/tmp/scripts/ 0m1.2s INFO: Running scripts post_chroot_unpack 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'update'] 0m2.1s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_minimize'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_minimize'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_zz_backports'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_setup_zz_backports'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'clean'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'clean'] 0m3.4s DEBUG: Recording chroot state 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-divert', '--list'] 0m3.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-divert', '--list'] 0m3.7s INFO: Running scripts is_testable 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/is_testable_uninstallable'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/is_testable_uninstallable'] 0m3.7s INFO: apt-cache does not know about any of the requested packages 0m3.7s INFO: Running scripts pre_test 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_test_exceptions'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_test_exceptions'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_test_root_password'] 0m3.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_test_root_password'] 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m4.3s DEBUG: No broken symlinks as far as we can find. 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_log_alternatives'] 0m4.4s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_install_log_alternatives'] 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m5.4s DEBUG: No broken symlinks as far as we can find. 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-cache', 'policy'] 0m6.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-cache', 'policy'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-cache', 'policy', 'gromacs-dev'] 0m6.3s DUMP: gromacs-dev: Installed: (none) Candidate: 2016.1-2 Version table: 2016.1-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-cache', 'policy', 'gromacs-dev'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', '-y', 'install', 'gromacs-dev=2016.1-2'] 0m8.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libblas-common libblas3 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libgfortran3 libgomp1 libgromacs-dev libgromacs2 libhwloc5 liblapack3 libltdl7 libnuma1 libquadmath0 Suggested packages: libfftw3-doc gromacs-mpich | gromacs-openmpi libmpich-dev libx11-dev zlib1g-dev libhwloc-contrib-plugins Recommended packages: gromacs-data libhwloc-plugins The following NEW packages will be installed: gromacs-dev libblas-common libblas3 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libgfortran3 libgomp1 libgromacs-dev libgromacs2 libhwloc5 liblapack3 libltdl7 libnuma1 libquadmath0 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After this operation, 66.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libfftw3-double3 amd64 3.3.5-3 [731 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libfftw3-long3 amd64 3.3.5-3 [314 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libfftw3-quad3 amd64 3.3.5-3 [556 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libfftw3-single3 amd64 3.3.5-3 [776 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libfftw3-bin amd64 3.3.5-3 [49.7 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libfftw3-dev amd64 3.3.5-3 [2141 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libgromacs2 amd64 2016.1-2 [11.3 MB] Get:17 http://deb.debian.org/debian stretch/main amd64 libgromacs-dev amd64 2016.1-2 [204 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 gromacs-dev amd64 2016.1-2 [19.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.4 MB in 0s (90.4 MB/s) Selecting previously unselected package libblas-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4412 files and directories currently installed.) Preparing to unpack .../00-libblas-common_3.7.0-2_amd64.deb ... Unpacking libblas-common (3.7.0-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../01-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../02-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libblas3. Preparing to unpack .../03-libblas3_3.7.0-2_amd64.deb ... Unpacking libblas3 (3.7.0-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../04-libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../05-libfftw3-double3_3.3.5-3_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.5-3) ... Selecting previously unselected package libfftw3-long3:amd64. Preparing to unpack .../06-libfftw3-long3_3.3.5-3_amd64.deb ... Unpacking libfftw3-long3:amd64 (3.3.5-3) ... Selecting previously unselected package libfftw3-quad3:amd64. Preparing to unpack .../07-libfftw3-quad3_3.3.5-3_amd64.deb ... Unpacking libfftw3-quad3:amd64 (3.3.5-3) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../08-libfftw3-single3_3.3.5-3_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.5-3) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../09-libfftw3-bin_3.3.5-3_amd64.deb ... Unpacking libfftw3-bin (3.3.5-3) ... Selecting previously unselected package libfftw3-dev:amd64. Preparing to unpack .../10-libfftw3-dev_3.3.5-3_amd64.deb ... Unpacking libfftw3-dev:amd64 (3.3.5-3) ... Selecting previously unselected package liblapack3. Preparing to unpack .../11-liblapack3_3.7.0-2_amd64.deb ... Unpacking liblapack3 (3.7.0-2) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../12-libltdl7_2.4.6-2_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../13-libnuma1_2.0.11-2.1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../14-libhwloc5_1.11.5-1_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.5-1) ... Selecting previously unselected package libgromacs2. Preparing to unpack .../15-libgromacs2_2016.1-2_amd64.deb ... Unpacking libgromacs2 (2016.1-2) ... Selecting previously unselected package libgromacs-dev. Preparing to unpack .../16-libgromacs-dev_2016.1-2_amd64.deb ... Unpacking libgromacs-dev (2016.1-2) ... Selecting previously unselected package gromacs-dev. Preparing to unpack .../17-gromacs-dev_2016.1-2_amd64.deb ... Unpacking gromacs-dev (2016.1-2) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libblas-common (3.7.0-2) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libfftw3-double3:amd64 (3.3.5-3) ... Setting up libfftw3-quad3:amd64 (3.3.5-3) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libfftw3-single3:amd64 (3.3.5-3) ... Setting up libfftw3-long3:amd64 (3.3.5-3) ... Setting up libfftw3-bin (3.3.5-3) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libfftw3-dev:amd64 (3.3.5-3) ... Setting up libgromacs2 (2016.1-2) ... Setting up libgromacs-dev (2016.1-2) ... Setting up gromacs-dev (2016.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', '-y', 'install', 'gromacs-dev=2016.1-2'] 0m8.8s INFO: Running scripts post_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_install_log_alternatives'] 0m8.8s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=libblas3: piuparts=gromacs-dev=2016.1-2: /usr/bin/update-alternatives --install /usr/lib/libblas.so.3 libblas.so.3 /usr/lib/libblas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=gromacs-dev=2016.1-2: /usr/bin/update-alternatives --install /usr/lib/liblapack.so.3 liblapack.so.3 /usr/lib/lapack/liblapack.so.3 10 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_install_log_alternatives'] 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m9.6s DEBUG: No broken symlinks as far as we can find. 0m9.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', '-ac', '--ignore-obsolete'] 0m10.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', '-ac', '--ignore-obsolete'] 0m10.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m10.4s DUMP: 0.15.6 0m10.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m10.4s INFO: Running adequate version 0.15.6 now. 0m10.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'gromacs-dev'] 0m10.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'gromacs-dev'] 0m10.5s INFO: Running scripts pre_remove 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_exceptions'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/pre_remove_exceptions'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.6s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gromacs-dev gromacs-dev 2016.1-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libfftw3-bin libfftw3-bin 3.3.5-3 install ok installed libfftw3-dev:amd64 libfftw3-dev 3.3.5-3 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.5-3 install ok installed libfftw3-long3:amd64 libfftw3-long3 3.3.5-3 install ok installed libfftw3-quad3:amd64 libfftw3-quad3 3.3.5-3 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.5-3 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgromacs-dev libgromacs-dev 2016.1-2 install ok installed libgromacs2 libgromacs2 2016.1-2 install ok installed libhwloc5:amd64 libhwloc5 1.11.5-1 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed libltdl7:amd64 libltdl7 2.4.6-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnuma1:amd64 libnuma1 2.0.11-2.1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'remove', 'libblas-common', 'libblas3', 'libfftw3-bin', 'libfftw3-dev:amd64', 'libfftw3-double3:amd64', 'libfftw3-long3:amd64', 'libfftw3-quad3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs-dev', 'libgromacs2', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libquadmath0:amd64', 'gromacs-dev'] 0m12.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gromacs-dev libblas-common libblas3 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libgfortran3 libgomp1 libgromacs-dev libgromacs2 libhwloc5 liblapack3 libltdl7 libnuma1 libquadmath0 0 upgraded, 0 newly installed, 18 to remove and 0 not upgraded. After this operation, 66.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4749 files and directories currently installed.) Removing gromacs-dev (2016.1-2) ... Removing libgromacs-dev (2016.1-2) ... Removing libgromacs2 (2016.1-2) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libfftw3-dev:amd64 (3.3.5-3) ... Removing libfftw3-bin (3.3.5-3) ... Removing libfftw3-double3:amd64 (3.3.5-3) ... Removing libfftw3-long3:amd64 (3.3.5-3) ... Removing libfftw3-quad3:amd64 (3.3.5-3) ... Removing libfftw3-single3:amd64 (3.3.5-3) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libhwloc5:amd64 (1.11.5-1) ... Removing libltdl7:amd64 (2.4.6-2) ... Removing libnuma1:amd64 (2.0.11-2.1) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'remove', 'libblas-common', 'libblas3', 'libfftw3-bin', 'libfftw3-dev:amd64', 'libfftw3-double3:amd64', 'libfftw3-long3:amd64', 'libfftw3-quad3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs-dev', 'libgromacs2', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libquadmath0:amd64', 'gromacs-dev'] 0m12.2s INFO: Running scripts post_remove 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_remove_exceptions'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_remove_exceptions'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--purge', 'libblas-common', 'libblas3', 'libfftw3-bin', 'libfftw3-dev:amd64', 'libfftw3-double3:amd64', 'libfftw3-long3:amd64', 'libfftw3-quad3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs-dev', 'libgromacs2', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libquadmath0:amd64'] 0m12.2s DUMP: dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-bin which isn't installed dpkg: warning: ignoring request to remove libfftw3-dev which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-long3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-quad3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgromacs-dev which isn't installed dpkg: warning: ignoring request to remove libgromacs2 which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--purge', 'libblas-common', 'libblas3', 'libfftw3-bin', 'libfftw3-dev:amd64', 'libfftw3-double3:amd64', 'libfftw3-long3:amd64', 'libfftw3-quad3:amd64', 'libfftw3-single3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs-dev', 'libgromacs2', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libquadmath0:amd64'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--purge', 'gromacs-dev'] 0m12.2s DUMP: dpkg: warning: ignoring request to remove gromacs-dev which isn't installed 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--purge', 'gromacs-dev'] 0m12.2s INFO: Running scripts post_purge 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_purge_exceptions'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_purge_exceptions'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--purge', '--pending'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--purge', '--pending'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--remove', '--pending'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg', '--remove', '--pending'] 0m12.3s INFO: Running scripts post_test 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_test_exceptions'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'tmp/scripts/post_test_exceptions'] 0m12.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m12.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m12.8s DEBUG: No broken symlinks as far as we can find. 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-divert', '--list'] 0m12.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'dpkg-divert', '--list'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'clean'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb', 'apt-get', 'clean'] 0m12.9s DEBUG: Recording chroot state 0m13.2s INFO: PASS: Installation and purging test. 0m13.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/shm'] 0m13.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/shm'] 0m13.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/console'] 0m13.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/console'] 0m13.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/ptmx'] 0m13.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/ptmx'] 0m13.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/pts'] 0m13.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/dev/pts'] 0m13.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/proc'] 0m13.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb/proc'] 0m13.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m13.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjpzwdtxb'] 0m13.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpjpzwdtxb 0m13.6s INFO: PASS: All tests. 0m13.6s INFO: piuparts run ends. ret=0 End: 2023-02-18 13:37:11 GMT