Start: 2023-02-18 06:07:42 GMT Package: roary Version: 3.8.0+dfsg-1 Installed-Size: 634 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree Description: high speed stand alone pan genome pipeline Homepage: http://sanger-pathogens.github.io/Roary/ Description-md5: 6d457fd706202fc2ef292eacf7b46029 Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing, use::comparing Section: science Priority: optional Filename: pool/main/r/roary/roary_3.8.0+dfsg-1_all.deb Size: 170134 MD5sum: d2b5bd8c3cf60d6fabc08169c52a4d40 SHA256: 062eece678b4556ee0de3961c4789d1b51e2e860d582d72e19aedd6f8beef3db Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt roary=3.8.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt roary=3.8.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzddva_1d 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzddva_1d 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/proc'] 0m1.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/proc'] 0m1.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/pts'] 0m1.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/pts'] 0m1.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/ptmx'] 0m1.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/ptmx'] 0m1.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/console'] 0m1.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/console'] 0m1.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/shm'] 0m1.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/shm'] 0m1.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.2s DEBUG: Created policy-rc.d and chmodded it. 0m1.2s DEBUG: Created resolv.conf. 0m1.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpzddva_1d/tmp/scripts/ 0m1.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzddva_1d/tmp/scripts/ 0m1.2s INFO: Running scripts post_chroot_unpack 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'update'] 0m1.9s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'update'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_dummy_users'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_dummy_users'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_forbid_home'] 0m3.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_forbid_home'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_minimize'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_minimize'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_zz_backports'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_setup_zz_backports'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'clean'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'clean'] 0m3.3s DEBUG: Recording chroot state 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-divert', '--list'] 0m3.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-divert', '--list'] 0m3.6s INFO: Running scripts is_testable 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s INFO: apt-cache does not know about any of the requested packages 0m3.6s INFO: Running scripts pre_test 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_test_root_password'] 0m3.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_test_root_password'] 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m3.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m4.2s DEBUG: No broken symlinks as far as we can find. 0m4.2s INFO: Running scripts pre_install 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_log_alternatives'] 0m4.2s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_install_log_alternatives'] 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m4.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m4.7s DEBUG: No broken symlinks as far as we can find. 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-cache', 'policy'] 0m5.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-cache', 'policy'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-cache', 'policy', 'roary'] 0m5.3s DUMP: roary: Installed: (none) Candidate: 3.8.0+dfsg-1 Version table: 3.8.0+dfsg-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-cache', 'policy', 'roary'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', '-y', 'install', 'roary=3.8.0+dfsg-1'] 0m27.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bedtools bioperl ca-certificates cd-hit fasttree fontconfig fontconfig-config fonts-dejavu-core libalgorithm-c3-perl libalgorithm-diff-perl libarray-utils-perl libbio-perl-perl libblas-common libblas3 libbsd0 libcairo2 libcapture-tiny-perl libclass-c3-perl libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl libcurl3 libdata-optlist-perl libdata-stag-perl libdatrie1 libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libencode-locale-perl libenv-path-perl libeval-closure-perl libexception-class-perl libexpat1 libffi6 libfile-find-rule-perl libfile-grep-perl libfile-listing-perl libfile-slurper-perl libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6 libgdbm3 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraph-perl libgraph-readwrite-perl libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu57 libidn11 libidn2-0 libio-all-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblog-log4perl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libncurses5 libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnumber-compare-perl libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-yapp-perl libperl5.24 libperlio-utf8-strict-perl libpixman-1-0 libpng16-16 libprocps6 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsensors4 libsm6 libspiffy-perl libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libtasn1-6 libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl libtext-glob-perl libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtry-tiny-perl libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml-writer-perl libxrender1 libxss1 libxt6 littler lsb-base mafft mcl mime-support ncbi-blast+ ncbi-data netbase openssl parallel perl perl-modules-5.24 perl-openssl-defaults prank procps python python-minimal python2.7 python2.7-minimal r-base-core r-cran-assertthat r-cran-colorspace r-cran-dichromat r-cran-digest r-cran-ggplot2 r-cran-gtable r-cran-labeling r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-munsell r-cran-pkgkitten r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble readline-common sysstat tzdata ucf unzip x11-common xdg-utils xz-utils zip Suggested packages: filo groff-base libxml-sax-expatxs-perl gnutls-bin krb5-doc krb5-user libdata-dump-perl libdb-file-lock-perl libfile-mimeinfo-perl libfile-readbackwards-perl libfreezethaw-perl libmldbm-perl libdbd-csv-perl liblog-dispatch-filerotate-perl librrds-perl libxml-dom-perl libcrypt-ssleay-perl libscalar-number-perl lm-sensors tcl8.6 tk8.6 libauthen-ntlm-perl mcl-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make python-doc python-tk python2.7-doc binutils binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-hexbin r-cran-hmisc r-cran-lattice r-cran-mapproj r-cran-maps r-cran-maptools r-cran-mgcv r-cran-multcomp r-cran-nlme r-cran-testthat r-cran-quantreg r-cran-knitr r-cran-rpart r-cran-getopt r-cran-abind r-cran-foreach r-cran-doparallel r-cran-iterators r-cran-inline r-cran-htmltools r-cran-htmlwidgets readline-doc isag gvfs-bin Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl libxml-sax-writer-perl libxml-libxml-perl libclass-c3-xs-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libdevel-lexalias-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl krb5-locales liblog-dispatch-perl libipc-shareable-perl libdevel-partialdump-perl libgpm2 publicsuffix libsasl2-modules libtext-csv-xs-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl blast2 lynx ruby bzip2 file rename psmisc r-recommended r-base-dev r-doc-html r-cran-crayon cron | cron-daemon libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: bedtools bioperl ca-certificates cd-hit fasttree fontconfig fontconfig-config fonts-dejavu-core libalgorithm-c3-perl libalgorithm-diff-perl libarray-utils-perl libbio-perl-perl libblas-common libblas3 libbsd0 libcairo2 libcapture-tiny-perl libclass-c3-perl libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl libcurl3 libdata-optlist-perl libdata-stag-perl libdatrie1 libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libencode-locale-perl libenv-path-perl libeval-closure-perl libexception-class-perl libexpat1 libffi6 libfile-find-rule-perl libfile-grep-perl libfile-listing-perl libfile-slurper-perl libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6 libgdbm3 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraph-perl libgraph-readwrite-perl libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu57 libidn11 libidn2-0 libio-all-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblog-log4perl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libncurses5 libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnumber-compare-perl libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-yapp-perl libperl5.24 libperlio-utf8-strict-perl libpixman-1-0 libpng16-16 libprocps6 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsensors4 libsm6 libspiffy-perl libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libtasn1-6 libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl libtext-glob-perl libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtry-tiny-perl libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml-writer-perl libxrender1 libxss1 libxt6 littler lsb-base mafft mcl mime-support ncbi-blast+ ncbi-data netbase openssl parallel perl perl-modules-5.24 perl-openssl-defaults prank procps python python-minimal python2.7 python2.7-minimal r-base-core r-cran-assertthat r-cran-colorspace r-cran-dichromat r-cran-digest r-cran-ggplot2 r-cran-gtable r-cran-labeling r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-munsell r-cran-pkgkitten r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble readline-common roary sysstat tzdata ucf unzip x11-common xdg-utils xz-utils zip 0 upgraded, 222 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 328 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 bioperl all 1.7.1-2 [422 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 cd-hit amd64 4.6.6-2 [852 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libarray-utils-perl all 0.5-1 [6254 B] Get:71 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libcapture-tiny-perl all 0.44-1 [25.4 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libclass-c3-perl all 0.32-1 [22.1 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libclass-data-inheritable-perl all 0.08-2 [9296 B] Get:83 http://deb.debian.org/debian stretch/main amd64 libparams-util-perl amd64 1.07-3+b1 [22.7 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libtry-tiny-perl all 0.28-1 [22.7 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-perl all 0.37-1 [20.8 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 libclass-load-perl all 0.23-1 [15.9 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 libclass-load-xs-perl amd64 0.09-2+b1 [14.4 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:102 http://deb.debian.org/debian stretch/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:103 http://deb.debian.org/debian stretch/main amd64 libmro-compat-perl all 0.12-1 [13.2 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libsub-identify-perl amd64 0.12-2+b1 [11.5 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libdevel-overloadinfo-perl all 0.004-1 [7270 B] Get:106 http://deb.debian.org/debian stretch/main amd64 libdevel-stacktrace-perl all 2.0200-1 [27.3 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libenv-path-perl all 0.19-1 [22.0 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-perl all 0.986-1 [49.9 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libeval-closure-perl all 0.14-1 [11.5 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libexception-class-perl all 1.42-1 [31.5 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:114 http://deb.debian.org/debian stretch/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:115 http://deb.debian.org/debian stretch/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libfile-grep-perl all 0.02-1 [7654 B] Get:117 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 libfile-slurper-perl all 0.009-1 [7850 B] Get:121 http://deb.debian.org/debian stretch/main amd64 libfile-which-perl all 1.21-1 [14.3 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 libfindbin-libs-perl all 2.150-1 [28.7 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 libgraph-perl all 1:0.96-2 [126 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 libscalar-list-utils-perl amd64 1:1.47-1 [54.4 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 libspiffy-perl all 0.41-1 [26.1 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 libio-all-perl all 0.86-2 [73.4 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 libparse-yapp-perl all 1.05-12 [50.5 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:139 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:143 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 libgraph-readwrite-perl all 2.09-1 [44.7 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 liblog-log4perl-perl all 1.48-1+deb9u1 [376 kB] Get:155 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-conflicts-perl all 0.003-1 [6882 B] Get:156 http://deb.debian.org/debian stretch/main amd64 libsub-name-perl amd64 0.21-1 [13.1 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB] Get:158 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-xs-perl amd64 0.28-3+b1 [17.9 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 libmoose-perl amd64 2.1807-1 [801 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:164 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 libperlio-utf8-strict-perl amd64 0.006-1+b2 [11.3 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 libsub-uplevel-perl all 0.2600-1 [16.1 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 libtest-deep-perl all 1.126-1 [48.4 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 libtext-diff-perl all 1.44-1 [27.4 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 libtest-differences-perl all 0.64-1 [18.0 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libtest-file-perl all 1.442-1 [19.8 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 libtest-files-perl all 0.14-1 [11.2 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 libtest-warn-perl all 0.32-1 [15.1 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 libtest-simple-perl all 1.302075-1 [298 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libtest-output-perl all 1.03-1 [13.9 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 libtext-csv-perl all 1.33-2 [50.5 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:185 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:192 http://deb.debian.org/debian stretch/main amd64 r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 littler all 0.3.1-1 [11.7 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 mcl amd64 1:14-137-1+b1 [619 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:197 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:199 http://deb.debian.org/debian stretch/main amd64 r-cran-assertthat all 0.1-1 [43.3 kB] Get:200 http://deb.debian.org/debian stretch/main amd64 r-cran-colorspace amd64 1.3-2-1 [388 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 r-cran-dichromat all 2.0.0-3 [146 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 r-cran-digest amd64 0.6.11-1 [112 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 r-cran-gtable all 0.2.0-1 [65.1 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 r-cran-plyr amd64 1.8.4-1 [727 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 r-cran-stringi amd64 1.1.2-1 [606 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 r-cran-magrittr amd64 1.5-3 [147 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 r-cran-stringr all 1.1.0-1 [117 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 r-cran-reshape2 amd64 1.4.2-1 [87.5 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:213 http://deb.debian.org/debian stretch/main amd64 r-cran-munsell all 0.4.3-1 [127 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 r-cran-labeling all 0.3-1 [39.9 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 r-cran-scales amd64 0.4.1-1 [200 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 r-cran-lazyeval amd64 0.2.0-1 [112 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 r-cran-tibble amd64 1.2-1 [121 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 r-cran-ggplot2 all 2.2.1-2 [2658 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 sysstat amd64 11.4.3-2 [360 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 parallel all 20161222-1 [307 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 fasttree amd64 2.1.9-1 [132 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 roary all 3.8.0+dfsg-1 [170 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 1s (83.8 MB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4412 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../01-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. Preparing to unpack .../02-libperl5.24_5.24.1-3+deb9u7_amd64.deb ... Unpacking libperl5.24:amd64 (5.24.1-3+deb9u7) ... Selecting previously unselected package perl. Preparing to unpack .../03-perl_5.24.1-3+deb9u7_amd64.deb ... Unpacking perl (5.24.1-3+deb9u7) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2+deb9u3) ... Selecting previously unselected package python-minimal. Preparing to unpack .../06-python-minimal_2.7.13-2_amd64.deb ... Unpacking python-minimal (2.7.13-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../07-mime-support_3.60_all.deb ... Unpacking mime-support (3.60) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../08-libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../09-libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../10-readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../11-libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../12-libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../13-libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../14-libpython2.7-stdlib_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Selecting previously unselected package python2.7. Preparing to unpack .../15-python2.7_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7 (2.7.13-2+deb9u3) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../16-libpython-stdlib_2.7.13-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.13-2) ... Setting up libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7-minimal (2.7.13-2+deb9u3) ... Setting up python-minimal (2.7.13-2) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7062 files and directories currently installed.) Preparing to unpack .../000-python_2.7.13-2_amd64.deb ... Unpacking python (2.7.13-2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../001-libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../002-libfreetype6_2.6.3-3.2+deb9u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../004-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../005-fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../006-libfontconfig1_2.11.0-6.7+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7+b1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../007-fontconfig_2.11.0-6.7+b1_amd64.deb ... Unpacking fontconfig (2.11.0-6.7+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../008-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../009-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../010-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../011-libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../012-libx11-data_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../013-libx11-6_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../014-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../015-lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) ... Selecting previously unselected package x11-common. Preparing to unpack .../016-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../017-libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../018-tzdata_2020a-0+deb9u1_all.deb ... Unpacking tzdata (2020a-0+deb9u1) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../019-libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../020-libssl1.0.2_1.0.2u-1~deb9u1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Selecting previously unselected package netbase. Preparing to unpack .../021-netbase_5.4_all.deb ... Unpacking netbase (5.4) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../022-libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Selecting previously unselected package procps. Preparing to unpack .../023-procps_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking procps (2:3.3.12-3+deb9u1) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../024-libgmp10_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../025-libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../026-libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../027-libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../028-libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../029-libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../030-libgnutls30_3.5.8-5+deb9u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../031-libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../032-libkrb5support0_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../033-libk5crypto3_1.15-1+deb9u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../034-libkrb5-3_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../035-libgssapi-krb5-2_1.15-1+deb9u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../036-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../037-libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../038-libldap-common_2.4.44+dfsg-5+deb9u4_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../039-libldap-2.4-2_2.4.44+dfsg-5+deb9u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package xz-utils. Preparing to unpack .../040-xz-utils_5.2.2-1.2+b1_amd64.deb ... Unpacking xz-utils (5.2.2-1.2+b1) ... Selecting previously unselected package bedtools. Preparing to unpack .../041-bedtools_2.26.0+dfsg-3_amd64.deb ... Unpacking bedtools (2.26.0+dfsg-3) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../042-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../043-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../044-libbio-perl-perl_1.7.1-2_all.deb ... Unpacking libbio-perl-perl (1.7.1-2) ... Selecting previously unselected package bioperl. Preparing to unpack .../045-bioperl_1.7.1-2_all.deb ... Unpacking bioperl (1.7.1-2) ... Selecting previously unselected package openssl. Preparing to unpack .../046-openssl_1.1.0l-1~deb9u1_amd64.deb ... Unpacking openssl (1.1.0l-1~deb9u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../047-ca-certificates_20200601~deb9u1_all.deb ... Unpacking ca-certificates (20200601~deb9u1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../048-libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package cd-hit. Preparing to unpack .../049-cd-hit_4.6.6-2_amd64.deb ... Unpacking cd-hit (4.6.6-2) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../050-libalgorithm-c3-perl_0.10-1_all.deb ... Unpacking libalgorithm-c3-perl (0.10-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../051-libalgorithm-diff-perl_1.19.03-1_all.deb ... Unpacking libalgorithm-diff-perl (1.19.03-1) ... Selecting previously unselected package libarray-utils-perl. Preparing to unpack .../052-libarray-utils-perl_0.5-1_all.deb ... Unpacking libarray-utils-perl (0.5-1) ... Selecting previously unselected package libblas-common. Preparing to unpack .../053-libblas-common_3.7.0-2_amd64.deb ... Unpacking libblas-common (3.7.0-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../054-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../055-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libblas3. Preparing to unpack .../056-libblas3_3.7.0-2_amd64.deb ... Unpacking libblas3 (3.7.0-2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../057-libpixman-1-0_0.34.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.34.0-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../058-libxcb-render0_1.12-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../059-libxcb-shm0_1.12-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.12-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../060-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../061-libcairo2_1.14.8-1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.8-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../062-libcapture-tiny-perl_0.44-1_all.deb ... Unpacking libcapture-tiny-perl (0.44-1) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../063-libclass-c3-perl_0.32-1_all.deb ... Unpacking libclass-c3-perl (0.32-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../064-libclass-data-inheritable-perl_0.08-2_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../065-libparams-util-perl_1.07-3+b1_amd64.deb ... Unpacking libparams-util-perl (1.07-3+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../066-libsub-install-perl_0.928-1_all.deb ... Unpacking libsub-install-perl (0.928-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../067-libdata-optlist-perl_0.110-1_all.deb ... Unpacking libdata-optlist-perl (0.110-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../068-libparams-classify-perl_0.013-6+b1_amd64.deb ... Unpacking libparams-classify-perl (0.013-6+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../069-libmodule-runtime-perl_0.014-2_all.deb ... Unpacking libmodule-runtime-perl (0.014-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../070-libtry-tiny-perl_0.28-1_all.deb ... Unpacking libtry-tiny-perl (0.28-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../071-libmodule-implementation-perl_0.09-1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../072-libpackage-stash-perl_0.37-1_all.deb ... Unpacking libpackage-stash-perl (0.37-1) ... Selecting previously unselected package libclass-load-perl. Preparing to unpack .../073-libclass-load-perl_0.23-1_all.deb ... Unpacking libclass-load-perl (0.23-1) ... Selecting previously unselected package libclass-load-xs-perl. Preparing to unpack .../074-libclass-load-xs-perl_0.09-2+b1_amd64.deb ... Unpacking libclass-load-xs-perl (0.09-2+b1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../075-libunistring0_0.9.6+really0.9.3-0.1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../076-libidn2-0_0.16-1+deb9u1_amd64.deb ... Unpacking libidn2-0:amd64 (0.16-1+deb9u1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../077-libnghttp2-14_1.18.1-1+deb9u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../078-libpsl5_0.17.0-3_amd64.deb ... Unpacking libpsl5:amd64 (0.17.0-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../079-librtmp1_2.4+20151223.gitfa8646d.1-1+b1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../080-libssh2-1_1.7.0-1+deb9u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.7.0-1+deb9u1) ... Selecting previously unselected package libcurl3:amd64. Preparing to unpack .../081-libcurl3_7.52.1-5+deb9u10_amd64.deb ... Unpacking libcurl3:amd64 (7.52.1-5+deb9u10) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../082-libdatrie1_0.2.10-4+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.10-4+b1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../083-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../084-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../085-libmro-compat-perl_0.12-1_all.deb ... Unpacking libmro-compat-perl (0.12-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../086-libsub-identify-perl_0.12-2+b1_amd64.deb ... Unpacking libsub-identify-perl (0.12-2+b1) ... Selecting previously unselected package libdevel-overloadinfo-perl. Preparing to unpack .../087-libdevel-overloadinfo-perl_0.004-1_all.deb ... Unpacking libdevel-overloadinfo-perl (0.004-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../088-libdevel-stacktrace-perl_2.0200-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0200-1) ... Selecting previously unselected package libdist-checkconflicts-perl. Preparing to unpack .../089-libdist-checkconflicts-perl_0.11-1_all.deb ... Unpacking libdist-checkconflicts-perl (0.11-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../090-libencode-locale-perl_1.05-1_all.deb ... Unpacking libencode-locale-perl (1.05-1) ... Selecting previously unselected package libenv-path-perl. Preparing to unpack .../091-libenv-path-perl_0.19-1_all.deb ... Unpacking libenv-path-perl (0.19-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../092-libsub-exporter-perl_0.986-1_all.deb ... Unpacking libsub-exporter-perl (0.986-1) ... Selecting previously unselected package libeval-closure-perl. Preparing to unpack .../093-libeval-closure-perl_0.14-1_all.deb ... Unpacking libeval-closure-perl (0.14-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../094-libexception-class-perl_1.42-1_all.deb ... Unpacking libexception-class-perl (1.42-1) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../095-libnumber-compare-perl_0.03-1_all.deb ... Unpacking libnumber-compare-perl (0.03-1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../096-libtext-glob-perl_0.10-1_all.deb ... Unpacking libtext-glob-perl (0.10-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../097-libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package libfile-grep-perl. Preparing to unpack .../098-libfile-grep-perl_0.02-1_all.deb ... Unpacking libfile-grep-perl (0.02-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../099-libtimedate-perl_2.3000-2+deb9u1_all.deb ... Unpacking libtimedate-perl (2.3000-2+deb9u1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../100-libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../101-libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package libfile-slurper-perl. Preparing to unpack .../102-libfile-slurper-perl_0.009-1_all.deb ... Unpacking libfile-slurper-perl (0.009-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../103-libfile-which-perl_1.21-1_all.deb ... Unpacking libfile-which-perl (1.21-1) ... Selecting previously unselected package libfindbin-libs-perl. Preparing to unpack .../104-libfindbin-libs-perl_2.150-1_all.deb ... Unpacking libfindbin-libs-perl (2.150-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../105-libglib2.0-0_2.50.3-2+deb9u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Selecting previously unselected package libgraph-perl. Preparing to unpack .../106-libgraph-perl_1%3a0.96-2_all.deb ... Unpacking libgraph-perl (1:0.96-2) ... Selecting previously unselected package libscalar-list-utils-perl. Preparing to unpack .../107-libscalar-list-utils-perl_1%3a1.47-1_amd64.deb ... Unpacking libscalar-list-utils-perl (1:1.47-1) ... Selecting previously unselected package libspiffy-perl. Preparing to unpack .../108-libspiffy-perl_0.41-1_all.deb ... Unpacking libspiffy-perl (0.41-1) ... Selecting previously unselected package libio-all-perl. Preparing to unpack .../109-libio-all-perl_0.86-2_all.deb ... Unpacking libio-all-perl (0.86-2) ... Selecting previously unselected package libparse-yapp-perl. Preparing to unpack .../110-libparse-yapp-perl_1.05-12_all.deb ... Unpacking libparse-yapp-perl (1.05-12) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../111-liburi-perl_1.71-1_all.deb ... Unpacking liburi-perl (1.71-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../112-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../113-libhtml-parser-perl_3.72-3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../114-libhtml-tree-perl_5.03-2_all.deb ... Unpacking libhtml-tree-perl (5.03-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../115-libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../116-liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../117-libhttp-message-perl_6.11-1_all.deb ... Unpacking libhttp-message-perl (6.11-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../118-libhttp-cookies-perl_6.01-1_all.deb ... Unpacking libhttp-cookies-perl (6.01-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../119-libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../120-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../121-libnet-ssleay-perl_1.80-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.80-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../122-libio-socket-ssl-perl_2.044-1_all.deb ... Unpacking libio-socket-ssl-perl (2.044-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../123-libnet-http-perl_6.12-1_all.deb ... Unpacking libnet-http-perl (6.12-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../124-liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../125-libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../126-libwww-perl_6.15-1_all.deb ... Unpacking libwww-perl (6.15-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../127-libxml-parser-perl_2.44-2+b1_amd64.deb ... Unpacking libxml-parser-perl (2.44-2+b1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../128-libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) ... Selecting previously unselected package libgraph-readwrite-perl. Preparing to unpack .../129-libgraph-readwrite-perl_2.09-1_all.deb ... Unpacking libgraph-readwrite-perl (2.09-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../130-libgraphite2-3_1.3.10-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../131-libharfbuzz0b_1.4.2-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.4.2-1) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../132-libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../133-libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../134-libjpeg62-turbo_1%3a1.5.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2) ... Selecting previously unselected package liblapack3. Preparing to unpack .../135-liblapack3_3.7.0-2_amd64.deb ... Unpacking liblapack3 (3.7.0-2) ... Selecting previously unselected package liblog-log4perl-perl. Preparing to unpack .../136-liblog-log4perl-perl_1.48-1+deb9u1_all.deb ... Unpacking liblog-log4perl-perl (1.48-1+deb9u1) ... Selecting previously unselected package libmodule-runtime-conflicts-perl. Preparing to unpack .../137-libmodule-runtime-conflicts-perl_0.003-1_all.deb ... Unpacking libmodule-runtime-conflicts-perl (0.003-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../138-libsub-name-perl_0.21-1_amd64.deb ... Unpacking libsub-name-perl (0.21-1) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Preparing to unpack .../139-libpackage-deprecationmanager-perl_0.17-1_all.deb ... Unpacking libpackage-deprecationmanager-perl (0.17-1) ... Selecting previously unselected package libpackage-stash-xs-perl. Preparing to unpack .../140-libpackage-stash-xs-perl_0.28-3+b1_amd64.deb ... Unpacking libpackage-stash-xs-perl (0.28-3+b1) ... Selecting previously unselected package libmoose-perl. Preparing to unpack .../141-libmoose-perl_2.1807-1_amd64.deb ... Unpacking libmoose-perl (2.1807-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../142-libthai-data_0.1.26-1_all.deb ... Unpacking libthai-data (0.1.26-1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../143-libthai0_0.1.26-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.26-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../144-libpango-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.40.5-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../145-libpangoft2-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.40.5-1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../146-libpangocairo-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.40.5-1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../147-libpaper1_1.1.24+nmu5_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu5) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../148-libpaper-utils_1.1.24+nmu5_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu5) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../149-libperlio-utf8-strict-perl_0.006-1+b2_amd64.deb ... Unpacking libperlio-utf8-strict-perl (0.006-1+b2) ... Selecting previously unselected package libsensors4:amd64. Preparing to unpack .../150-libsensors4_1%3a3.4.0-4_amd64.deb ... Unpacking libsensors4:amd64 (1:3.4.0-4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../151-libsm6_2%3a1.2.2-1+b3_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1+b3) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../152-libsub-uplevel-perl_0.2600-1_all.deb ... Unpacking libsub-uplevel-perl (0.2600-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../153-libtcl8.6_8.6.6+dfsg-1+b1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../154-libtest-deep-perl_1.126-1_all.deb ... Unpacking libtest-deep-perl (1.126-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../155-libtext-diff-perl_1.44-1_all.deb ... Unpacking libtext-diff-perl (1.44-1) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../156-libtest-differences-perl_0.64-1_all.deb ... Unpacking libtest-differences-perl (0.64-1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../157-libtest-exception-perl_0.43-1_all.deb ... Unpacking libtest-exception-perl (0.43-1) ... Selecting previously unselected package libtest-file-perl. Preparing to unpack .../158-libtest-file-perl_1.442-1_all.deb ... Unpacking libtest-file-perl (1.442-1) ... Selecting previously unselected package libtest-files-perl. Preparing to unpack .../159-libtest-files-perl_0.14-1_all.deb ... Unpacking libtest-files-perl (0.14-1) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../160-libtest-warn-perl_0.32-1_all.deb ... Unpacking libtest-warn-perl (0.32-1) ... Selecting previously unselected package libtest-simple-perl. Preparing to unpack .../161-libtest-simple-perl_1.302075-1_all.deb ... Unpacking libtest-simple-perl (1.302075-1) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../162-libtest-most-perl_0.35-1_all.deb ... Unpacking libtest-most-perl (0.35-1) ... Selecting previously unselected package libtest-output-perl. Preparing to unpack .../163-libtest-output-perl_1.03-1_all.deb ... Unpacking libtest-output-perl (1.03-1) ... Selecting previously unselected package libtext-csv-perl. Preparing to unpack .../164-libtext-csv-perl_1.33-2_all.deb ... Unpacking libtext-csv-perl (1.33-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../165-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../166-libtiff5_4.0.8-2+deb9u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.8-2+deb9u5) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../167-libxft2_2.3.2-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1+b2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../168-libtk8.6_8.6.6-1+b1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.6-1+b1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../169-libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) ... Selecting previously unselected package zip. Preparing to unpack .../170-zip_3.0-11+b1_amd64.deb ... Unpacking zip (3.0-11+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../171-unzip_6.0-21+deb9u2_amd64.deb ... Unpacking unzip (6.0-21+deb9u2) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../172-xdg-utils_1.1.1-1+deb9u2_all.deb ... Unpacking xdg-utils (1.1.1-1+deb9u2) ... Selecting previously unselected package r-base-core. Preparing to unpack .../173-r-base-core_3.3.3-1_amd64.deb ... Unpacking r-base-core (3.3.3-1) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../174-r-cran-littler_0.3.1-1_amd64.deb ... Unpacking r-cran-littler (0.3.1-1) ... Selecting previously unselected package littler. Preparing to unpack .../175-littler_0.3.1-1_all.deb ... Unpacking littler (0.3.1-1) ... Selecting previously unselected package mafft. Preparing to unpack .../176-mafft_7.307-1_amd64.deb ... Unpacking mafft (7.307-1) ... Selecting previously unselected package mcl. Preparing to unpack .../177-mcl_1%3a14-137-1+b1_amd64.deb ... Unpacking mcl (1:14-137-1+b1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../178-ncbi-data_6.1.20170106+dfsg1-0+deb9u1_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../179-ncbi-blast+_2.6.0-1_amd64.deb ... Unpacking ncbi-blast+ (2.6.0-1) ... Selecting previously unselected package prank. Preparing to unpack .../180-prank_0.0.150803-2_amd64.deb ... Unpacking prank (0.0.150803-2) ... Selecting previously unselected package r-cran-assertthat. Preparing to unpack .../181-r-cran-assertthat_0.1-1_all.deb ... Unpacking r-cran-assertthat (0.1-1) ... Selecting previously unselected package r-cran-colorspace. Preparing to unpack .../182-r-cran-colorspace_1.3-2-1_amd64.deb ... Unpacking r-cran-colorspace (1.3-2-1) ... Selecting previously unselected package r-cran-dichromat. Preparing to unpack .../183-r-cran-dichromat_2.0.0-3_all.deb ... Unpacking r-cran-dichromat (2.0.0-3) ... Selecting previously unselected package r-cran-digest. Preparing to unpack .../184-r-cran-digest_0.6.11-1_amd64.deb ... Unpacking r-cran-digest (0.6.11-1) ... Selecting previously unselected package r-cran-gtable. Preparing to unpack .../185-r-cran-gtable_0.2.0-1_all.deb ... Unpacking r-cran-gtable (0.2.0-1) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../186-r-cran-mass_7.3-45-1_amd64.deb ... Unpacking r-cran-mass (7.3-45-1) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../187-r-cran-pkgkitten_0.1.4-1_all.deb ... Unpacking r-cran-pkgkitten (0.1.4-1) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../188-r-cran-rcpp_0.12.9-1_amd64.deb ... Unpacking r-cran-rcpp (0.12.9-1) ... Selecting previously unselected package r-cran-plyr. Preparing to unpack .../189-r-cran-plyr_1.8.4-1_amd64.deb ... Unpacking r-cran-plyr (1.8.4-1) ... Selecting previously unselected package r-cran-stringi. Preparing to unpack .../190-r-cran-stringi_1.1.2-1_amd64.deb ... Unpacking r-cran-stringi (1.1.2-1) ... Selecting previously unselected package r-cran-magrittr. Preparing to unpack .../191-r-cran-magrittr_1.5-3_amd64.deb ... Unpacking r-cran-magrittr (1.5-3) ... Selecting previously unselected package r-cran-stringr. Preparing to unpack .../192-r-cran-stringr_1.1.0-1_all.deb ... Unpacking r-cran-stringr (1.1.0-1) ... Selecting previously unselected package r-cran-reshape2. Preparing to unpack .../193-r-cran-reshape2_1.4.2-1_amd64.deb ... Unpacking r-cran-reshape2 (1.4.2-1) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../194-r-cran-rcolorbrewer_1.1-2-1_all.deb ... Unpacking r-cran-rcolorbrewer (1.1-2-1) ... Selecting previously unselected package r-cran-munsell. Preparing to unpack .../195-r-cran-munsell_0.4.3-1_all.deb ... Unpacking r-cran-munsell (0.4.3-1) ... Selecting previously unselected package r-cran-labeling. Preparing to unpack .../196-r-cran-labeling_0.3-1_all.deb ... Unpacking r-cran-labeling (0.3-1) ... Selecting previously unselected package r-cran-scales. Preparing to unpack .../197-r-cran-scales_0.4.1-1_amd64.deb ... Unpacking r-cran-scales (0.4.1-1) ... Selecting previously unselected package r-cran-lazyeval. Preparing to unpack .../198-r-cran-lazyeval_0.2.0-1_amd64.deb ... Unpacking r-cran-lazyeval (0.2.0-1) ... Selecting previously unselected package r-cran-tibble. Preparing to unpack .../199-r-cran-tibble_1.2-1_amd64.deb ... Unpacking r-cran-tibble (1.2-1) ... Selecting previously unselected package r-cran-ggplot2. Preparing to unpack .../200-r-cran-ggplot2_2.2.1-2_all.deb ... Unpacking r-cran-ggplot2 (2.2.1-2) ... Selecting previously unselected package sysstat. Preparing to unpack .../201-sysstat_11.4.3-2_amd64.deb ... Unpacking sysstat (11.4.3-2) ... Selecting previously unselected package parallel. Preparing to unpack .../202-parallel_20161222-1_all.deb ... Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Unpacking parallel (20161222-1) ... Selecting previously unselected package fasttree. Preparing to unpack .../203-fasttree_2.1.9-1_amd64.deb ... Unpacking fasttree (2.1.9-1) ... Selecting previously unselected package roary. Preparing to unpack .../204-roary_3.8.0+dfsg-1_all.deb ... Unpacking roary (3.8.0+dfsg-1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up prank (0.0.150803-2) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up bedtools (2.26.0+dfsg-3) ... Setting up mime-support (3.60) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 18 06:08:04 UTC 2023. Universal Time is now: Sat Feb 18 06:08:04 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Setting up ucf (3.0036) ... Setting up zip (3.0-11+b1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up lsb-base (9.20161125) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up procps (2:3.3.12-3+deb9u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libenv-path-perl (0.19-1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libpackage-stash-xs-perl (0.28-3+b1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up fasttree (2.1.9-1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up liburi-perl (1.71-1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libscalar-list-utils-perl (1:1.47-1) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up mcl (1:14-137-1+b1) ... Setting up libfile-grep-perl (0.02-1) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libio-string-perl (1.08-3) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libnet-http-perl (6.12-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libsub-uplevel-perl (0.2600-1) ... Setting up libparams-util-perl (1.07-3+b1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up libsub-name-perl (0.21-1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libtext-csv-perl (1.33-2) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libfile-slurper-perl (0.009-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up libclass-c3-perl (0.32-1) ... Setting up libspiffy-perl (0.41-1) ... Setting up libtest-warn-perl (0.32-1) ... Setting up netbase (5.4) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libsub-install-perl (0.928-1) ... Setting up libfindbin-libs-perl (2.150-1) ... Setting up mafft (7.307-1) ... Setting up libtest-deep-perl (1.126-1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libparse-yapp-perl (1.05-12) ... Setting up cd-hit (4.6.6-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtry-tiny-perl (0.28-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up liblog-log4perl-perl (1.48-1+deb9u1) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up sysstat (11.4.3-2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up libfile-which-perl (1.21-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up libgraph-perl (1:0.96-2) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libmodule-runtime-perl (0.014-2) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up libdevel-stacktrace-perl (2.0200-1) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libtext-diff-perl (1.44-1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up libcapture-tiny-perl (0.44-1) ... Setting up libio-html-perl (1.001-1) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libperlio-utf8-strict-perl (0.006-1+b2) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libtest-simple-perl (1.302075-1) ... Setting up libarray-utils-perl (0.5-1) ... Setting up libsub-identify-perl (0.12-2+b1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libtest-file-perl (1.442-1) ... Setting up libio-all-perl (0.86-2) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up bioperl (1.7.1-2) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libeval-closure-perl (0.14-1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up python (2.7.13-2) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up parallel (20161222-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libtest-differences-perl (0.64-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libexception-class-perl (1.42-1) ... Setting up libtest-files-perl (0.14-1) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libtest-output-perl (1.03-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libtest-most-perl (0.35-1) ... Setting up libpackage-stash-perl (0.37-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libdevel-overloadinfo-perl (0.004-1) ... Setting up libclass-load-perl (0.23-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libpackage-deprecationmanager-perl (0.17-1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libclass-load-xs-perl (0.09-2+b1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up libmoose-perl (2.1807-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.1-1) ... Setting up littler (0.3.1-1) ... Setting up r-cran-gtable (0.2.0-1) ... Setting up r-cran-assertthat (0.1-1) ... Setting up r-cran-rcolorbrewer (1.1-2-1) ... Setting up r-cran-stringi (1.1.2-1) ... Setting up r-cran-pkgkitten (0.1.4-1) ... Setting up r-cran-rcpp (0.12.9-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-colorspace (1.3-2-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-plyr (1.8.4-1) ... Setting up r-cran-digest (0.6.11-1) ... Setting up r-cran-magrittr (1.5-3) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up r-cran-lazyeval (0.2.0-1) ... Setting up r-cran-stringr (1.1.0-1) ... Setting up r-cran-munsell (0.4.3-1) ... Setting up r-cran-reshape2 (1.4.2-1) ... Setting up r-cran-scales (0.4.1-1) ... Setting up r-cran-tibble (1.2-1) ... Setting up r-cran-ggplot2 (2.2.1-2) ... Setting up libwww-perl (6.15-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libgraph-readwrite-perl (2.09-1) ... Setting up roary (3.8.0+dfsg-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', '-y', 'install', 'roary=3.8.0+dfsg-1'] 0m27.9s INFO: Running scripts post_install 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_install_exceptions'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_install_log_alternatives'] 0m27.9s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --auto /usr/bin/python LOG-ALTERNATIVES: dpkg=python: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --remove python /usr/bin/python1.5 LOG-ALTERNATIVES: dpkg=python: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --remove python /usr/bin/python2.1 LOG-ALTERNATIVES: dpkg=python: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --remove python /usr/bin/python2.2 LOG-ALTERNATIVES: dpkg=mime-support: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --remove view /usr/bin/see LOG-ALTERNATIVES: dpkg=procps: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/w w /usr/bin/w.procps 50 --slave /usr/share/man/man1/w.1.gz w.1.gz /usr/share/man/man1/w.procps.1.gz LOG-ALTERNATIVES: dpkg=perl: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/rename rename /usr/bin/prename 60 --slave /usr/share/man/man1/rename.1.gz rename.1.gz /usr/share/man/man1/prename.1.gz LOG-ALTERNATIVES: dpkg=libblas3: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --install /usr/lib/libblas.so.3 libblas.so.3 /usr/lib/libblas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=xz-utils: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/lzma lzma /usr/bin/xz 20 --slave /usr/share/man/man1/lzma.1.gz lzma.1.gz /usr/share/man/man1/xz.1.gz --slave /usr/bin/unlzma unlzma /usr/bin/unxz --slave /usr/share/man/man1/unlzma.1.gz unlzma.1.gz /usr/share/man/man1/unxz.1.gz --slave /usr/bin/lzcat lzcat /usr/bin/xzcat --slave /usr/share/man/man1/lzcat.1.gz lzcat.1.gz /usr/share/man/man1/xzcat.1.gz --slave /usr/bin/lzmore lzmore /usr/bin/xzmore --slave /usr/share/man/man1/lzmore.1.gz lzmore.1.gz /usr/share/man/man1/xzmore.1.gz --slave /usr/bin/lzless lzless /usr/bin/xzless --slave /usr/share/man/man1/lzless.1.gz lzless.1.gz /usr/share/man/man1/xzless.1.gz --slave /usr/bin/lzdiff lzdiff /usr/bin/xzdiff --slave /usr/share/man/man1/lzdiff.1.gz lzdiff.1.gz /usr/share/man/man1/xzdiff.1.gz --slave /usr/bin/lzcmp lzcmp /usr/bin/xzcmp --slave /usr/share/man/man1/lzcmp.1.gz lzcmp.1.gz /usr/share/man/man1/xzcmp.1.gz --slave /usr/bin/lzgrep lzgrep /usr/bin/xzgrep --slave /usr/share/man/man1/lzgrep.1.gz lzgrep.1.gz /usr/share/man/man1/xzgrep.1.gz --slave /usr/bin/lzegrep lzegrep /usr/bin/xzegrep --slave /usr/share/man/man1/lzegrep.1.gz lzegrep.1.gz /usr/share/man/man1/xzegrep.1.gz --slave /usr/bin/lzfgrep lzfgrep /usr/bin/xzfgrep --slave /usr/share/man/man1/lzfgrep.1.gz lzfgrep.1.gz /usr/share/man/man1/xzfgrep.1.gz LOG-ALTERNATIVES: dpkg=sysstat: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --display sar LOG-ALTERNATIVES: dpkg=sysstat: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/sar sar /usr/bin/sar.sysstat 0 --slave /usr/share/man/man1/sar.1.gz sar.1.gz /usr/share/man/man1/sar.sysstat.1.gz LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=roary=3.8.0+dfsg-1: /usr/bin/update-alternatives --install /usr/lib/liblapack.so.3 liblapack.so.3 /usr/lib/lapack/liblapack.so.3 10 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_install_log_alternatives'] 0m27.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m30.4s DEBUG: No broken symlinks as far as we can find. 0m31.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', '-ac', '--ignore-obsolete'] 0m33.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', '-ac', '--ignore-obsolete'] 0m33.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m33.1s DUMP: 0.15.6 0m33.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m33.1s INFO: Running adequate version 0.15.6 now. 0m33.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'roary'] 0m33.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'roary'] 0m33.2s INFO: Running scripts pre_remove 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_exceptions'] 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/pre_remove_exceptions'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.3s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bedtools bedtools 2.26.0+dfsg-3 install ok installed bioperl bioperl 1.7.1-2 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed ca-certificates ca-certificates 20200601~deb9u1 install ok installed cd-hit cd-hit 4.6.6-2 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed fasttree fasttree 2.1.9-1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.10-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libarray-utils-perl libarray-utils-perl 0.5-1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.1-2 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcairo2:amd64 libcairo2 1.14.8-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.44-1 install ok installed libclass-c3-perl libclass-c3-perl 0.32-1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-2 install ok installed libclass-load-perl libclass-load-perl 0.23-1 install ok installed libclass-load-xs-perl libclass-load-xs-perl 0.09-2+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libcurl3:amd64 libcurl3 7.52.1-5+deb9u10 install ok installed libdata-optlist-perl libdata-optlist-perl 0.110-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-overloadinfo-perl libdevel-overloadinfo-perl 0.004-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0200-1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libenv-path-perl libenv-path-perl 0.19-1 install ok installed libeval-closure-perl libeval-closure-perl 0.14-1 install ok installed libexception-class-perl libexception-class-perl 1.42-1 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-1 install ok installed libfile-grep-perl libfile-grep-perl 0.02-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-slurper-perl libfile-slurper-perl 0.009-1 install ok installed libfile-which-perl libfile-which-perl 1.21-1 install ok installed libfindbin-libs-perl libfindbin-libs-perl 2.150-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u2 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u5 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgraph-perl libgraph-perl 1:0.96-2 install ok installed libgraph-readwrite-perl libgraph-readwrite-perl 2.09-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+b2 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.11-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libidn2-0:amd64 libidn2-0 0.16-1+deb9u1 install ok installed libio-all-perl libio-all-perl 0.86-2 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.044-1 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u1 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u4 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u4 install ok installed liblog-log4perl-perl liblog-log4perl-perl 1.48-1+deb9u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-runtime-conflicts-perl libmodule-runtime-conflicts-perl 0.003-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.014-2 install ok installed libmoose-perl libmoose-perl 2.1807-1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmro-compat-perl libmro-compat-perl 0.12-1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnet-http-perl libnet-http-perl 6.12-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.80-1 install ok installed libnettle6:amd64 libnettle6 3.3-1+b2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2 install ok installed libpackage-deprecationmanager-perl libpackage-deprecationmanager-perl 0.17-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.37-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.28-3+b1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu5 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu5 install ok installed libparams-classify-perl libparams-classify-perl 0.013-6+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-3+b1 install ok installed libparse-yapp-perl libparse-yapp-perl 1.05-12 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libperlio-utf8-strict-perl libperlio-utf8-strict-perl 0.006-1+b2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u3 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u1 install ok installed libscalar-list-utils-perl libscalar-list-utils-perl 1:1.47-1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libspiffy-perl libspiffy-perl 0.41-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1+deb9u1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.986-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.12-2+b1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2600-1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.6+dfsg-1+b1 install ok installed libtest-deep-perl libtest-deep-perl 1.126-1 install ok installed libtest-differences-perl libtest-differences-perl 0.64-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-file-perl libtest-file-perl 1.442-1 install ok installed libtest-files-perl libtest-files-perl 0.14-1 install ok installed libtest-most-perl libtest-most-perl 0.35-1 install ok installed libtest-output-perl libtest-output-perl 1.03-1 install ok installed libtest-simple-perl libtest-simple-perl 1.302075-1 install ok installed libtest-warn-perl libtest-warn-perl 0.32-1 install ok installed libtext-csv-perl libtext-csv-perl 1.33-2 install ok installed libtext-diff-perl libtext-diff-perl 1.44-1 install ok installed libtext-glob-perl libtext-glob-perl 0.10-1 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u5 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb9u1 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.6-1+b1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.28-1 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed liburi-perl liburi-perl 1.71-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libwww-perl libwww-perl 6.15-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u1 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxml-parser-perl libxml-parser-perl 2.44-2+b1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed littler littler 0.3.1-1 install ok installed login login 1:4.4-4.1 install ok installed lsb-base lsb-base 9.20161125 install ok installed mafft mafft 7.307-1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mcl mcl 1:14-137-1+b1 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncbi-blast+ ncbi-blast+ 2.6.0-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed netbase netbase 5.4 install ok installed openssl openssl 1.1.0l-1~deb9u1 install ok installed parallel parallel 20161222-1 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed prank prank 0.0.150803-2 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed python python 2.7.13-2 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python2.7 python2.7 2.7.13-2+deb9u3 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u3 install ok installed r-base-core r-base-core 3.3.3-1 install ok installed r-cran-assertthat r-cran-assertthat 0.1-1 install ok installed r-cran-colorspace r-cran-colorspace 1.3-2-1 install ok installed r-cran-dichromat r-cran-dichromat 2.0.0-3 install ok installed r-cran-digest r-cran-digest 0.6.11-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 2.2.1-2 install ok installed r-cran-gtable r-cran-gtable 0.2.0-1 install ok installed r-cran-labeling r-cran-labeling 0.3-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.0-1 install ok installed r-cran-littler r-cran-littler 0.3.1-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-3 install ok installed r-cran-mass r-cran-mass 7.3-45-1 install ok installed r-cran-munsell r-cran-munsell 0.4.3-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-1 install ok installed r-cran-plyr r-cran-plyr 1.8.4-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-1 install ok installed r-cran-rcpp r-cran-rcpp 0.12.9-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.2-1 install ok installed r-cran-scales r-cran-scales 0.4.1-1 install ok installed r-cran-stringi r-cran-stringi 1.1.2-1 install ok installed r-cran-stringr r-cran-stringr 1.1.0-1 install ok installed r-cran-tibble r-cran-tibble 1.2-1 install ok installed readline-common readline-common 7.0-3 install ok installed roary roary 3.8.0+dfsg-1 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysstat sysstat 11.4.3-2 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed tzdata tzdata 2020a-0+deb9u1 install ok installed ucf ucf 3.0036 install ok installed unzip unzip 6.0-21+deb9u2 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.1-1+deb9u2 install ok installed xz-utils xz-utils 5.2.2-1.2+b1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'remove', 'bedtools', 'bioperl', 'ca-certificates', 'cd-hit', 'fasttree', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libarray-utils-perl', 'libbio-perl-perl', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libclass-c3-perl', 'libclass-data-inheritable-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdevel-globaldestruction-perl', 'libdevel-overloadinfo-perl', 'libdevel-stacktrace-perl', 'libdist-checkconflicts-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libeval-closure-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libffi6:amd64', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-all-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'liblog-log4perl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoose-perl', 'libmro-compat-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnumber-compare-perl', 'libp11-kit0:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-yapp-perl', 'libperl5.24:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors4:amd64', 'libsm6:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-parser-perl', 'libxml-writer-perl', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'mafft', 'mcl', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'parallel', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'prank', 'procps', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'r-base-core', 'r-cran-assertthat', 'r-cran-colorspace', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-labeling', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-munsell', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'readline-common', 'sysstat', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'roary'] 0m38.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bedtools bioperl ca-certificates cd-hit fasttree fontconfig fontconfig-config fonts-dejavu-core libalgorithm-c3-perl libalgorithm-diff-perl libarray-utils-perl libbio-perl-perl libblas-common libblas3 libbsd0 libcairo2 libcapture-tiny-perl libclass-c3-perl libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl libcurl3 libdata-optlist-perl libdata-stag-perl libdatrie1 libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libencode-locale-perl libenv-path-perl libeval-closure-perl libexception-class-perl libexpat1 libffi6 libfile-find-rule-perl libfile-grep-perl libfile-listing-perl libfile-slurper-perl libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6 libgdbm3 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraph-perl libgraph-readwrite-perl libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu57 libidn11 libidn2-0 libio-all-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblog-log4perl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libncurses5 libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnumber-compare-perl libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparse-yapp-perl libperl5.24 libperlio-utf8-strict-perl libpixman-1-0 libpng16-16 libprocps6 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsensors4 libsm6 libspiffy-perl libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libtasn1-6 libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl libtext-glob-perl libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtry-tiny-perl libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml-writer-perl libxrender1 libxss1 libxt6 littler lsb-base mafft mcl mime-support ncbi-blast+ ncbi-data netbase openssl parallel perl perl-modules-5.24 perl-openssl-defaults prank procps python python-minimal python2.7 python2.7-minimal r-base-core r-cran-assertthat r-cran-colorspace r-cran-dichromat r-cran-digest r-cran-ggplot2 r-cran-gtable r-cran-labeling r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-munsell r-cran-pkgkitten r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble readline-common roary sysstat tzdata ucf unzip x11-common xdg-utils xz-utils zip 0 upgraded, 0 newly installed, 222 to remove and 0 not upgraded. After this operation, 328 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18766 files and directories currently installed.) Removing roary (3.8.0+dfsg-1) ... Removing bedtools (2.26.0+dfsg-3) ... Removing bioperl (1.7.1-2) ... Removing r-cran-ggplot2 (2.2.1-2) ... Removing r-cran-tibble (1.2-1) ... Removing r-cran-scales (0.4.1-1) ... Removing r-cran-reshape2 (1.4.2-1) ... Removing r-cran-stringr (1.1.0-1) ... Removing r-cran-rcolorbrewer (1.1-2-1) ... Removing r-cran-stringi (1.1.2-1) ... Removing libgraph-readwrite-perl (2.09-1) ... Removing libxml-parser-perl (2.44-2+b1) ... Removing cd-hit (4.6.6-2) ... Removing fasttree (2.1.9-1) ... Removing libmoose-perl (2.1807-1) ... Removing libdevel-overloadinfo-perl (0.004-1) ... Removing libmro-compat-perl (0.12-1) ... Removing libclass-c3-perl (0.32-1) ... Removing libalgorithm-c3-perl (0.10-1) ... Removing libtest-files-perl (0.14-1) ... Removing libtest-most-perl (0.35-1) ... Removing libtest-differences-perl (0.64-1) ... Removing libtext-diff-perl (1.44-1) ... Removing libalgorithm-diff-perl (1.19.03-1) ... Removing libarray-utils-perl (0.5-1) ... Removing libbio-perl-perl (1.7.1-2) ... Removing littler (0.3.1-1) ... Removing libtest-output-perl (1.03-1) ... Removing libcapture-tiny-perl (0.44-1) ... Removing libexception-class-perl (1.42-1) ... Removing libclass-data-inheritable-perl (0.08-2) ... Removing libclass-load-xs-perl (0.09-2+b1) ... Removing libclass-load-perl (0.23-1) ... Removing libeval-closure-perl (0.14-1) ... Removing libsub-exporter-perl (0.986-1) ... Removing libdata-optlist-perl (0.110-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-stacktrace-perl (2.0200-1) ... Removing libmodule-runtime-conflicts-perl (0.003-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing libenv-path-perl (0.19-1) ... Removing ncbi-blast+ (2.6.0-1) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u3) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Removing libfile-find-rule-perl (0.34-1) ... Removing libfile-grep-perl (0.02-1) ... Removing libfile-slurper-perl (0.009-1) ... Removing libfile-which-perl (1.21-1) ... Removing libfindbin-libs-perl (2.150-1) ... Removing parallel (20161222-1) ... Removing 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Removing 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Removing mafft (7.307-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libgraph-perl (1:0.96-2) ... Removing libio-all-perl (0.86-2) ... Removing libio-string-perl (1.08-3) ... Removing liblog-log4perl-perl (1.48-1+deb9u1) ... Removing libpackage-deprecationmanager-perl (0.17-1) ... Removing libpackage-stash-perl (0.37-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-runtime-perl (0.014-2) ... Removing procps (2:3.3.12-3+deb9u1) ... Removing libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Removing libnumber-compare-perl (0.03-1) ... Removing libpackage-stash-xs-perl (0.28-3+b1) ... Removing libparams-classify-perl (0.013-6+b1) ... Removing libparams-util-perl (1.07-3+b1) ... Removing libparse-yapp-perl (1.05-12) ... Removing libperlio-utf8-strict-perl (0.006-1+b2) ... Removing libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u3) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Removing libspiffy-perl (0.41-1) ... Removing libscalar-list-utils-perl (1:1.47-1) ... Removing sysstat (11.4.3-2) ... Removing libsensors4:amd64 (1:3.4.0-4) ... Removing libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.12-2+b1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.21-1) ... Removing libtest-warn-perl (0.32-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2600-1) ... Removing libtest-deep-perl (1.126-1) ... Removing libtest-file-perl (1.442-1) ... Removing libtest-simple-perl (1.302075-1) ... Removing libtext-csv-perl (1.33-2) ... Removing libtext-glob-perl (0.10-1) ... Removing libtry-tiny-perl (0.28-1) ... Removing mcl (1:14-137-1+b1) ... Removing mime-support (3.60) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Removing prank (0.0.150803-2) ... Removing r-cran-assertthat (0.1-1) ... Removing r-cran-munsell (0.4.3-1) ... Removing r-cran-colorspace (1.3-2-1) ... Removing r-cran-dichromat (2.0.0-3) ... Removing r-cran-digest (0.6.11-1) ... Removing r-cran-gtable (0.2.0-1) ... Removing r-cran-labeling (0.3-1) ... Removing r-cran-lazyeval (0.2.0-1) ... Removing r-cran-magrittr (1.5-3) ... Removing r-cran-mass (7.3-45-1) ... Removing r-cran-plyr (1.8.4-1) ... Removing xz-utils (5.2.2-1.2+b1) ... Removing r-cran-rcpp (0.12.9-1) ... Removing r-cran-littler (0.3.1-1) ... Removing r-cran-pkgkitten (0.1.4-1) ... Removing r-base-core (3.3.3-1) ... Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing libtk8.6:amd64 (8.6.6-1+b1) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing libcairo2:amd64 (1.14.8-1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-dejavu-core (2.37-1) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libxss1:amd64 (1:1.2.2-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libcurl3:amd64 (7.52.1-5+deb9u10) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Removing libgnutls30:amd64 (3.5.8-5+deb9u5) ... Removing libp11-kit0:amd64 (0.23.3-2) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libhogweed4:amd64 (3.3-1+b2) ... Removing libgmp10:amd64 (2:6.1.2+dfsg-1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libidn11:amd64 (1.33-1+deb9u1) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (0.16-1+deb9u1) ... Removing libtiff5:amd64 (4.0.8-2+deb9u5) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2) ... Removing libkrb5-3:amd64 (1.15-1+deb9u1) ... Removing libk5crypto3:amd64 (1.15-1+deb9u1) ... Removing libkrb5support0:amd64 (1.15-1+deb9u1) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing libldap-common (2.4.44+dfsg-5+deb9u4) ... Removing libnettle6:amd64 (3.3-1+b2) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Removing libpaper-utils (1.1.24+nmu5) ... Removing libpaper1:amd64 (1.1.24+nmu5) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libreadline7:amd64 (7.0-3) ... Removing libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Removing libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Removing libssh2-1:amd64 (1.7.0-1+deb9u1) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Removing libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Removing libthai-data (0.1.26-1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (9.20161125) ... Removing readline-common (7.0-3) ... Removing tzdata (2020a-0+deb9u1) ... Removing ucf (3.0036) ... Removing unzip (6.0-21+deb9u2) ... Removing xdg-utils (1.1.1-1+deb9u2) ... Removing zip (3.0-11+b1) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1) ... Removing libx11-data (2:1.6.4-3+deb9u1) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libwww-perl (6.15-1) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-2) ... Removing libhtml-parser-perl (3.72-3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing libio-socket-ssl-perl (2.044-1) ... Removing libnet-http-perl (6.12-1) ... Removing libnet-ssleay-perl (1.80-1) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libwww-robotrules-perl (6.01-1) ... Removing netbase (5.4) ... Removing ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.11-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing openssl (1.1.0l-1~deb9u1) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Removing libtimedate-perl (2.3000-2+deb9u1) ... Removing liburi-perl (1.71-1) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'remove', 'bedtools', 'bioperl', 'ca-certificates', 'cd-hit', 'fasttree', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libarray-utils-perl', 'libbio-perl-perl', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libclass-c3-perl', 'libclass-data-inheritable-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdevel-globaldestruction-perl', 'libdevel-overloadinfo-perl', 'libdevel-stacktrace-perl', 'libdist-checkconflicts-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libeval-closure-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libffi6:amd64', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-all-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'liblog-log4perl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoose-perl', 'libmro-compat-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnumber-compare-perl', 'libp11-kit0:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-yapp-perl', 'libperl5.24:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors4:amd64', 'libsm6:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-parser-perl', 'libxml-writer-perl', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'mafft', 'mcl', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'parallel', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'prank', 'procps', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'r-base-core', 'r-cran-assertthat', 'r-cran-colorspace', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-labeling', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-munsell', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'readline-common', 'sysstat', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'roary'] 0m38.4s INFO: Running scripts post_remove 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_remove_exceptions'] 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_remove_exceptions'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--purge', 'bedtools', 'bioperl', 'ca-certificates', 'cd-hit', 'fasttree', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libarray-utils-perl', 'libbio-perl-perl', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libclass-c3-perl', 'libclass-data-inheritable-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdevel-globaldestruction-perl', 'libdevel-overloadinfo-perl', 'libdevel-stacktrace-perl', 'libdist-checkconflicts-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libeval-closure-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libffi6:amd64', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-all-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'liblog-log4perl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoose-perl', 'libmro-compat-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnumber-compare-perl', 'libp11-kit0:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-yapp-perl', 'libperl5.24:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors4:amd64', 'libsm6:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-parser-perl', 'libxml-writer-perl', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'mafft', 'mcl', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'parallel', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'prank', 'procps', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'r-base-core', 'r-cran-assertthat', 'r-cran-colorspace', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-labeling', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-munsell', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'readline-common', 'sysstat', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip'] 0m39.4s DUMP: dpkg: warning: ignoring request to remove bedtools which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed (Reading database ... 4490 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb9u1) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cd-hit which isn't installed dpkg: warning: ignoring request to remove fasttree which isn't installed Purging configuration files for fontconfig (2.11.0-6.7+b1) ... Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libarray-utils-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-xs-perl which isn't installed dpkg: warning: ignoring request to remove libcurl3 which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-overloadinfo-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdist-checkconflicts-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libenv-path-perl which isn't installed dpkg: warning: ignoring request to remove libeval-closure-perl which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfile-find-rule-perl which isn't installed dpkg: warning: ignoring request to remove libfile-grep-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurper-perl which isn't installed dpkg: warning: ignoring request to remove libfile-which-perl which isn't installed dpkg: warning: ignoring request to remove libfindbin-libs-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... dpkg: warning: ignoring request to remove libgmp10 which isn't installed dpkg: warning: ignoring request to remove libgnutls30 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraph-readwrite-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhogweed4 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libio-all-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.44+dfsg-5+deb9u4) ... dpkg: warning: ignoring request to remove liblog-log4perl-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-conflicts-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmoose-perl which isn't installed dpkg: warning: ignoring request to remove libmro-compat-perl which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnettle6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnumber-compare-perl which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpackage-deprecationmanager-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.24+nmu5) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed dpkg: warning: ignoring request to remove libparse-yapp-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libperlio-utf8-strict-perl which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libprocps6 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libscalar-list-utils-perl which isn't installed Purging configuration files for libsensors4:amd64 (1:3.4.0-4) ... dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libspiffy-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u1) ... dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-file-perl which isn't installed dpkg: warning: ignoring request to remove libtest-files-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-output-perl which isn't installed dpkg: warning: ignoring request to remove libtest-simple-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtext-glob-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed Purging configuration files for libxss1:amd64 (1:1.2.2-1) ... dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove mcl which isn't installed Purging configuration files for mime-support (3.60) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Purging configuration files for netbase (5.4) ... Purging configuration files for openssl (1.1.0l-1~deb9u1) ... Purging configuration files for parallel (20161222-1) ... Purging configuration files for perl (5.24.1-3+deb9u7) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for procps (2:3.3.12-3+deb9u1) ... Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u3) ... Purging configuration files for r-base-core (3.3.3-1) ... dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed Purging configuration files for readline-common (7.0-3) ... Purging configuration files for sysstat (11.4.3-2) ... Purging configuration files for tzdata (2020a-0+deb9u1) ... Purging configuration files for ucf (3.0036) ... Purging configuration files for unzip (6.0-21+deb9u2) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--purge', 'bedtools', 'bioperl', 'ca-certificates', 'cd-hit', 'fasttree', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libarray-utils-perl', 'libbio-perl-perl', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libclass-c3-perl', 'libclass-data-inheritable-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libcurl3:amd64', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdevel-globaldestruction-perl', 'libdevel-overloadinfo-perl', 'libdevel-stacktrace-perl', 'libdist-checkconflicts-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libeval-closure-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libffi6:amd64', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libio-all-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'liblog-log4perl-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoose-perl', 'libmro-compat-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libnumber-compare-perl', 'libp11-kit0:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparse-yapp-perl', 'libperl5.24:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors4:amd64', 'libsm6:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-uplevel-perl', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libunistring0:amd64', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-parser-perl', 'libxml-writer-perl', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'mafft', 'mcl', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'parallel', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'prank', 'procps', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'r-base-core', 'r-cran-assertthat', 'r-cran-colorspace', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-ggplot2', 'r-cran-gtable', 'r-cran-labeling', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-munsell', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'readline-common', 'sysstat', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--purge', 'roary'] 0m39.4s DUMP: dpkg: warning: ignoring request to remove roary which isn't installed 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--purge', 'roary'] 0m39.4s INFO: Running scripts post_purge 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_purge_exceptions'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_purge_exceptions'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--purge', '--pending'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--purge', '--pending'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--remove', '--pending'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg', '--remove', '--pending'] 0m39.5s INFO: Running scripts post_test 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_test_exceptions'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'tmp/scripts/post_test_exceptions'] 0m39.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m39.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m40.1s DEBUG: No broken symlinks as far as we can find. 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-divert', '--list'] 0m40.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'dpkg-divert', '--list'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'clean'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzddva_1d', 'apt-get', 'clean'] 0m40.2s DEBUG: Recording chroot state 0m40.5s INFO: PASS: Installation and purging test. 0m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/shm'] 0m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/shm'] 0m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/console'] 0m40.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/console'] 0m40.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/ptmx'] 0m40.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/ptmx'] 0m40.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/pts'] 0m40.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/dev/pts'] 0m40.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/proc'] 0m40.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzddva_1d/proc'] 0m40.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m41.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzddva_1d'] 0m41.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzddva_1d 0m41.0s INFO: PASS: All tests. 0m41.0s INFO: piuparts run ends. ret=0 End: 2023-02-18 06:08:23 GMT