Start: 2023-02-18 04:36:23 GMT Package: votca-csg Source: votca-csg (1.3.0-3) Version: 1.3.0-3+b1 Installed-Size: 1420 Maintainer: Debichem Team Architecture: amd64 Depends: votca-csg-scripts (= 1.3.0-3), libboost-filesystem1.62.0, libboost-program-options1.62.0, libboost-system1.62.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgromacs2, libstdc++6 (>= 5.2), libvotca-csg3, libvotca-tools3 Suggests: votca-csg-tutorials Description: VOTCA's coarse-graining engine Homepage: http://www.votca.org Description-md5: d665eaefb4002c3b2219e77ebaba4345 Section: science Priority: optional Filename: pool/main/v/votca-csg/votca-csg_1.3.0-3+b1_amd64.deb Size: 308556 MD5sum: c09fb8bdce5aa8b39642517435def6de SHA256: 9828be938ed136c9c75969dbd9d051435858f5f74601efbeff5ff03de134f946 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt votca-csg=1.3.0-3+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch --no-upgrade-test --apt votca-csg=1.3.0-3+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8tqatu2k 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8tqatu2k 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp8tqatu2k/tmp/scripts/ 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8tqatu2k/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'update'] 0m2.6s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'clean'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'clean'] 0m5.0s DEBUG: Recording chroot state 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-divert', '--list'] 0m5.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-divert', '--list'] 0m5.3s INFO: Running scripts is_testable 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s INFO: apt-cache does not know about any of the requested packages 0m5.3s INFO: Running scripts pre_test 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_test_root_password'] 0m5.3s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_test_root_password'] 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m5.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m5.8s DEBUG: No broken symlinks as far as we can find. 0m5.8s INFO: Running scripts pre_install 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_log_alternatives'] 0m5.9s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_install_log_alternatives'] 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m6.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m6.4s DEBUG: No broken symlinks as far as we can find. 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-cache', 'policy'] 0m7.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-cache', 'policy'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-cache', 'policy', 'votca-csg'] 0m7.2s DUMP: votca-csg: Installed: (none) Candidate: 1.3.0-3+b1 Version table: 1.3.0-3+b1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-cache', 'policy', 'votca-csg'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', '-y', 'install', 'votca-csg=1.3.0-3+b1'] 0m14.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libblas-common libblas3 libboost-filesystem1.62.0 libboost-program-options1.62.0 libboost-system1.62.0 libexpat1 libffi6 libfftw3-double3 libfftw3-single3 libgdbm3 libgfortran3 libgomp1 libgromacs2 libgsl2 libhwloc5 liblapack3 libltdl7 libnuma1 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libvotca-csg3 libvotca-tools3 mime-support perl perl-modules-5.24 python python-minimal python2.7 python2.7-minimal readline-common votca-csg-scripts Suggested packages: libfftw3-bin libfftw3-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libhwloc-contrib-plugins perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make python-doc python-tk python2.7-doc binutils binfmt-support readline-doc votca-csg-tutorials Recommended packages: libhwloc-plugins bzip2 file xz-utils netbase rename The following NEW packages will be installed: libblas-common libblas3 libboost-filesystem1.62.0 libboost-program-options1.62.0 libboost-system1.62.0 libexpat1 libffi6 libfftw3-double3 libfftw3-single3 libgdbm3 libgfortran3 libgomp1 libgromacs2 libgsl2 libhwloc5 liblapack3 libltdl7 libnuma1 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libvotca-csg3 libvotca-tools3 mime-support perl perl-modules-5.24 python python-minimal python2.7 python2.7-minimal readline-common votca-csg votca-csg-scripts 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 30.9 MB of archives. After this operation, 116 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4 [32.4 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4 [63.2 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4 [159 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libfftw3-double3 amd64 3.3.5-3 [731 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libfftw3-single3 amd64 3.3.5-3 [776 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libgsl2 amd64 2.3+dfsg-1 [893 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libgromacs2 amd64 2016.1-2 [11.3 MB] Get:35 http://deb.debian.org/debian stretch/main amd64 libvotca-tools3 amd64 1.3.0-2+b2 [163 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libvotca-csg3 amd64 1.3.0-3+b1 [209 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 votca-csg-scripts all 1.3.0-3 [69.9 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 votca-csg amd64 1.3.0-3+b1 [309 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.9 MB in 1s (27.5 MB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4412 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../01-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. 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Preparing to unpack .../19-votca-csg-scripts_1.3.0-3_all.deb ... Unpacking votca-csg-scripts (1.3.0-3) ... Selecting previously unselected package votca-csg. Preparing to unpack .../20-votca-csg_1.3.0-3+b1_amd64.deb ... Unpacking votca-csg (1.3.0-3+b1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up mime-support (3.60) ... Setting up libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libgsl2:amd64 (2.3+dfsg-1) ... Setting up libfftw3-double3:amd64 (3.3.5-3) ... Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libfftw3-single3:amd64 (3.3.5-3) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up python (2.7.13-2) ... Setting up libgromacs2 (2016.1-2) ... Setting up libvotca-tools3 (1.3.0-2+b2) ... Setting up libvotca-csg3 (1.3.0-3+b1) ... Setting up votca-csg-scripts (1.3.0-3) ... Setting up votca-csg (1.3.0-3+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', '-y', 'install', 'votca-csg=1.3.0-3+b1'] 0m14.4s INFO: Running scripts post_install 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_install_log_alternatives'] 0m14.4s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --auto /usr/bin/python LOG-ALTERNATIVES: dpkg=python: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --remove python /usr/bin/python1.5 LOG-ALTERNATIVES: dpkg=python: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --remove python /usr/bin/python2.1 LOG-ALTERNATIVES: dpkg=python: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --remove python /usr/bin/python2.2 LOG-ALTERNATIVES: dpkg=mime-support: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --remove view /usr/bin/see LOG-ALTERNATIVES: dpkg=perl: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --install /usr/bin/rename rename /usr/bin/prename 60 --slave /usr/share/man/man1/rename.1.gz rename.1.gz /usr/share/man/man1/prename.1.gz LOG-ALTERNATIVES: dpkg=libblas3: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --install /usr/lib/libblas.so.3 libblas.so.3 /usr/lib/libblas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=votca-csg=1.3.0-3+b1: /usr/bin/update-alternatives --install /usr/lib/liblapack.so.3 liblapack.so.3 /usr/lib/lapack/liblapack.so.3 10 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_install_log_alternatives'] 0m14.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m14.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m15.2s DEBUG: No broken symlinks as far as we can find. 0m15.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', '-ac', '--ignore-obsolete'] 0m16.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', '-ac', '--ignore-obsolete'] 0m16.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.3s DUMP: 0.15.6 0m16.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.3s INFO: Running adequate version 0.15.6 now. 0m16.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'votca-csg'] 0m16.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'votca-csg'] 0m16.8s INFO: Running scripts pre_remove 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/pre_remove_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m18.3s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libboost-filesystem1.62.0:amd64 libboost-filesystem1.62.0 1.62.0+dfsg-4 install ok installed libboost-program-options1.62.0:amd64 libboost-program-options1.62.0 1.62.0+dfsg-4 install ok installed libboost-system1.62.0:amd64 libboost-system1.62.0 1.62.0+dfsg-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u3 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.5-3 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.5-3 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgromacs2 libgromacs2 2016.1-2 install ok installed libgsl2:amd64 libgsl2 2.3+dfsg-1 install ok installed libhwloc5:amd64 libhwloc5 1.11.5-1 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed libltdl7:amd64 libltdl7 2.4.6-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnuma1:amd64 libnuma1 2.0.11-2.1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u3 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libvotca-csg3 libvotca-csg3 1.3.0-3+b1 install ok installed libvotca-tools3 libvotca-tools3 1.3.0-2+b2 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed python python 2.7.13-2 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python2.7 python2.7 2.7.13-2+deb9u3 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u3 install ok installed readline-common readline-common 7.0-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed votca-csg votca-csg 1.3.0-3+b1 install ok installed votca-csg-scripts votca-csg-scripts 1.3.0-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'remove', 'libblas-common', 'libblas3', 'libboost-filesystem1.62.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-system1.62.0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libgsl2:amd64', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libvotca-csg3', 'libvotca-tools3', 'mime-support', 'perl', 'perl-modules-5.24', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'votca-csg-scripts', 'votca-csg'] 0m19.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas-common libblas3 libboost-filesystem1.62.0 libboost-program-options1.62.0 libboost-system1.62.0 libexpat1 libffi6 libfftw3-double3 libfftw3-single3 libgdbm3 libgfortran3 libgomp1 libgromacs2 libgsl2 libhwloc5 liblapack3 libltdl7 libnuma1 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libvotca-csg3 libvotca-tools3 mime-support perl perl-modules-5.24 python python-minimal python2.7 python2.7-minimal readline-common votca-csg votca-csg-scripts 0 upgraded, 0 newly installed, 38 to remove and 0 not upgraded. After this operation, 116 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7417 files and directories currently installed.) Removing votca-csg (1.3.0-3+b1) ... Removing libvotca-csg3 (1.3.0-3+b1) ... Removing libgromacs2 (2016.1-2) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libvotca-tools3 (1.3.0-2+b2) ... Removing libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-system1.62.0:amd64 (1.62.0+dfsg-4) ... Removing votca-csg-scripts (1.3.0-3) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u3) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Removing libexpat1:amd64 (2.2.0-2+deb9u3) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libfftw3-double3:amd64 (3.3.5-3) ... Removing libfftw3-single3:amd64 (3.3.5-3) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgsl2:amd64 (2.3+dfsg-1) ... Removing libhwloc5:amd64 (1.11.5-1) ... Removing libltdl7:amd64 (2.4.6-2) ... Removing libnuma1:amd64 (2.0.11-2.1) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u3) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libreadline7:amd64 (7.0-3) ... Removing libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Removing mime-support (3.60) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing readline-common (7.0-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'remove', 'libblas-common', 'libblas3', 'libboost-filesystem1.62.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-system1.62.0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libgsl2:amd64', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libvotca-csg3', 'libvotca-tools3', 'mime-support', 'perl', 'perl-modules-5.24', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'votca-csg-scripts', 'votca-csg'] 0m19.1s INFO: Running scripts post_remove 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_remove_exceptions'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_remove_exceptions'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--purge', 'libblas-common', 'libblas3', 'libboost-filesystem1.62.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-system1.62.0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libgsl2:amd64', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libvotca-csg3', 'libvotca-tools3', 'mime-support', 'perl', 'perl-modules-5.24', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'votca-csg-scripts'] 0m19.3s DUMP: dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-filesystem1.62.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.62.0 which isn't installed dpkg: warning: ignoring request to remove libboost-system1.62.0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgromacs2 which isn't installed dpkg: warning: ignoring request to remove libgsl2 which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed (Reading database ... 4419 files and directories currently installed.) Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u1) ... dpkg: warning: ignoring request to remove libvotca-csg3 which isn't installed dpkg: warning: ignoring request to remove libvotca-tools3 which isn't installed Purging configuration files for mime-support (3.60) ... Purging configuration files for perl (5.24.1-3+deb9u7) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u3) ... Purging configuration files for readline-common (7.0-3) ... dpkg: warning: ignoring request to remove votca-csg-scripts which isn't installed 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--purge', 'libblas-common', 'libblas3', 'libboost-filesystem1.62.0:amd64', 'libboost-program-options1.62.0:amd64', 'libboost-system1.62.0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgdbm3:amd64', 'libgfortran3:amd64', 'libgomp1:amd64', 'libgromacs2', 'libgsl2:amd64', 'libhwloc5:amd64', 'liblapack3', 'libltdl7:amd64', 'libnuma1:amd64', 'libperl5.24:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libvotca-csg3', 'libvotca-tools3', 'mime-support', 'perl', 'perl-modules-5.24', 'python', 'python-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'votca-csg-scripts'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--purge', 'votca-csg'] 0m19.3s DUMP: dpkg: warning: ignoring request to remove votca-csg which isn't installed 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--purge', 'votca-csg'] 0m19.3s INFO: Running scripts post_purge 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_purge_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_purge_exceptions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--purge', '--pending'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--purge', '--pending'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--remove', '--pending'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg', '--remove', '--pending'] 0m19.3s INFO: Running scripts post_test 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_test_exceptions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'tmp/scripts/post_test_exceptions'] 0m19.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m19.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m19.8s DEBUG: No broken symlinks as far as we can find. 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-divert', '--list'] 0m19.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'dpkg-divert', '--list'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'clean'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k', 'apt-get', 'clean'] 0m19.8s DEBUG: Recording chroot state 0m20.1s INFO: PASS: Installation and purging test. 0m20.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/shm'] 0m20.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/shm'] 0m20.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/console'] 0m20.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/console'] 0m20.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/ptmx'] 0m20.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/ptmx'] 0m20.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/pts'] 0m20.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/dev/pts'] 0m20.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/proc'] 0m20.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k/proc'] 0m20.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m20.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8tqatu2k'] 0m20.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8tqatu2k 0m20.5s INFO: PASS: All tests. 0m20.5s INFO: piuparts run ends. ret=0 End: 2023-02-18 04:36:44 GMT