Start: 2023-02-06 20:11:28 GMT [stretch] Package: biom-format-tools Source: python-biom-format Version: 2.1.5+dfsg-7 Installed-Size: 20 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: python-biom-format (<= 2.1+dfsg-1) Depends: python3-numpy (>= 1:1.10.0~b1), python3-numpy-abi9, python3:any, python3-biom-format (= 2.1.5+dfsg-7) Breaks: python-biom-format (<= 2.1+dfsg-1) Description: command-line tools for BIOM format Homepage: http://biom-format.org/ Description-md5: daa62587623a0ed8c537470ee5bfb0c4 Section: misc Priority: optional Filename: pool/main/p/python-biom-format/biom-format-tools_2.1.5+dfsg-7_amd64.deb Size: 11382 MD5sum: 6dc95959e03bfe49df18576cfb727b29 SHA256: e8c63b76c06447287f5267d51719bdd7f88d415849458b6090571ee3efdc3e24 [buster] Package: biom-format-tools Source: python-biom-format Version: 2.1.7+dfsg-2 Installed-Size: 22 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, python3:any, python3-biom-format (= 2.1.7+dfsg-2) Description: command-line tools for BIOM format Homepage: http://biom-format.org/ Description-md5: daa62587623a0ed8c537470ee5bfb0c4 Section: misc Priority: optional Filename: pool/main/p/python-biom-format/biom-format-tools_2.1.7+dfsg-2_amd64.deb Size: 14140 MD5sum: 11fa255db19e4d3d92acaed8f058c8b8 SHA256: ef5f66f2bc1988f7582eebc7498f328b5054cf30daed1c007685c6fffb13f9f4 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt biom-format-tools=2.1.7+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt biom-format-tools=2.1.7+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpo1b3vtzu 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpo1b3vtzu 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpo1b3vtzu/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'update'] 0m2.9s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s INFO: Running scripts post_setup 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 0m5.8s INFO: Running scripts is_testable 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_test_root_password'] 0m5.9s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_test_root_password'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'show', '--no-all-versions', 'biom-format-tools'] 0m6.0s DUMP: Package: biom-format-tools Source: python-biom-format Version: 2.1.5+dfsg-7 Installed-Size: 20 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: python-biom-format (<= 2.1+dfsg-1) Depends: python3-numpy (>= 1:1.10.0~b1), python3-numpy-abi9, python3:any, python3-biom-format (= 2.1.5+dfsg-7) Breaks: python-biom-format (<= 2.1+dfsg-1) Description-en: command-line tools for BIOM format The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the command-line tools for the BIOM format Python package. Description-md5: daa62587623a0ed8c537470ee5bfb0c4 Homepage: http://biom-format.org/ Section: misc Priority: optional Filename: pool/main/p/python-biom-format/biom-format-tools_2.1.5+dfsg-7_amd64.deb Size: 11382 MD5sum: 6dc95959e03bfe49df18576cfb727b29 SHA256: e8c63b76c06447287f5267d51719bdd7f88d415849458b6090571ee3efdc3e24 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'show', '--no-all-versions', 'biom-format-tools'] 0m6.0s INFO: apt-cache knows about the following packages: biom-format-tools 0m6.0s INFO: Running scripts pre_install 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy'] 0m6.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy', 'biom-format-tools'] 0m6.1s DUMP: biom-format-tools: Installed: (none) Candidate: 2.1.5+dfsg-7 Version table: 2.1.5+dfsg-7 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy', 'biom-format-tools'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'install', 'biom-format-tools'] 0m24.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils bzip2 cpp cpp-6 dh-python file g++ g++-6 gcc gcc-6 libasan3 libatomic1 libblas-common libblas3 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1 libgcc-6-dev libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr4 libmpx2 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libstdc++-6-dev libtsan0 libubsan0 linux-libc-dev manpages manpages-dev mime-support python3 python3-biom-format python3-click python3-colorama python3-decorator python3-future python3-minimal python3-numpy python3-scipy python3.5 python3.5-minimal readline-common xz-utils Suggested packages: binutils-doc bzip2-doc cpp-doc gcc-6-locales libdpkg-perl g++-multilib g++-6-multilib gcc-6-doc libstdc++6-6-dbg gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg glibc-doc libstdc++-6-doc man-browser python3-doc python3-tk python3-venv python-biom-format-doc python-future-doc gfortran python-numpy-doc python3-dev python3-nose python3-numpy-dbg python-scipy-doc python3.5-venv python3.5-doc binfmt-support readline-doc The following NEW packages will be installed: binutils biom-format-tools bzip2 cpp cpp-6 dh-python file g++ g++-6 gcc gcc-6 libasan3 libatomic1 libblas-common libblas3 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1 libgcc-6-dev libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr4 libmpx2 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libstdc++-6-dev libtsan0 libubsan0 linux-libc-dev manpages manpages-dev mime-support python3 python3-biom-format python3-click python3-colorama python3-decorator python3-future python3-minimal python3-numpy python3-scipy python3.5 python3.5-minimal readline-common xz-utils 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 59.7 MB of archives. After this operation, 254 MB of additional disk space will be used. 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amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:46 http://deb.debian.org/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 gcc amd64 4:6.3.0-4 [5196 B] Get:55 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 g++ amd64 4:6.3.0-4 [1546 B] Get:61 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.7 MB in 2s (29.1 MB/s) Selecting previously unselected package libssl1.1:amd64. 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Selecting previously unselected package libstdc++-6-dev:amd64. Preparing to unpack .../43-libstdc++-6-dev_6.3.0-18+deb9u1_amd64.deb ... Unpacking libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package g++-6. Preparing to unpack .../44-g++-6_6.3.0-18+deb9u1_amd64.deb ... Unpacking g++-6 (6.3.0-18+deb9u1) ... Selecting previously unselected package g++. Preparing to unpack .../45-g++_4%3a6.3.0-4_amd64.deb ... Unpacking g++ (4:6.3.0-4) ... Selecting previously unselected package manpages-dev. Preparing to unpack .../46-manpages-dev_4.10-2_all.deb ... Unpacking manpages-dev (4.10-2) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libatomic1:amd64 (6.3.0-18+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up manpages (4.10-2) ... Setting up libcc1-0:amd64 (6.3.0-18+deb9u1) ... Setting up libasan3:amd64 (6.3.0-18+deb9u1) ... Setting up mime-support (3.60) ... Setting up libcilkrts5:amd64 (6.3.0-18+deb9u1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up libubsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libtsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up linux-libc-dev:amd64 (4.9.228-1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up liblsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libmpx2:amd64 (6.3.0-18+deb9u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libmpfr4:amd64 (3.1.5-1) ... Setting up libmpc3:amd64 (1.0.3-1+b2) ... Setting up binutils (2.28-5) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up manpages-dev (4.10-2) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libitm1:amd64 (6.3.0-18+deb9u1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up libisl15:amd64 (0.18-1) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up python3.5 (3.5.3-1+deb9u1) ... Setting up libpython3-stdlib:amd64 (3.5.3-1) ... Setting up cpp (4:6.3.0-4) ... Setting up gcc-6 (6.3.0-18+deb9u1) ... Setting up g++-6 (6.3.0-18+deb9u1) ... Setting up gcc (4:6.3.0-4) ... Setting up g++ (4:6.3.0-4) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3 (3.5.3-1) ... Setting up python3-numpy (1:1.12.1-3) ... Setting up python3-colorama (0.3.7-1) ... Setting up python3-future (0.15.2-4) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up dh-python (2.20170125) ... Setting up python3-decorator (4.0.11-1) ... Setting up python3-scipy (0.18.1-2) ... Setting up python3-click (6.6-1) ... Setting up python3-biom-format (2.1.5+dfsg-7) ... Setting up biom-format-tools (2.1.5+dfsg-7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'install', 'biom-format-tools'] 0m24.8s INFO: Running scripts post_install 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_install_exceptions'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_install_exceptions'] 0m24.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 0m25.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 0m25.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpo1b3vtzu to buster 0m25.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m25.3s INFO: Running scripts pre_distupgrade 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'update'] 0m29.3s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 3s (4612 kB/s) Reading package lists... 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'update'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'upgrade'] 0m35.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages have been kept back: apt bash binutils biom-format-tools coreutils cpp dash dpkg e2fslibs e2fsprogs g++ gcc gpgv libapt-pkg5.0 libatomic1 libblas3 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcilkrts5 libcomerr2 libexpat1 libfdisk1 libgcc1 libgomp1 libgpg-error0 libitm1 liblapack3 liblsan0 libmount1 libmpc3 libmpx2 libncursesw5 libpam-modules libpam-modules-bin libpython3-stdlib libquadmath0 libreadline7 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++6 libsystemd0 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 login mount ncurses-base ncurses-bin perl-base python3 python3-biom-format python3-future python3-minimal python3-numpy python3-scipy util-linux The following packages will be upgraded: adduser base-files base-passwd bsdutils bzip2 debconf debian-archive-keyring debianutils dh-python diffutils file findutils grep gzip hostname init-system-helpers libacl1 libattr1 libaudit-common libaudit1 libbz2-1.0 libcap-ng0 libdb5.3 libdebconfclient0 libgcrypt20 libgmp10 liblz4-1 liblzma5 libmagic-mgc libmagic1 libmpdec2 libpam-runtime libpam0g libpcre3 libselinux1 libsemanage-common libsemanage1 libsepol1 linux-libc-dev manpages manpages-dev mime-support multiarch-support passwd python3-click python3-decorator readline-common sed sensible-utils sysvinit-utils tar xz-utils zlib1g 53 upgraded, 0 newly installed, 0 to remove and 64 not upgraded. Need to get 14.1 MB of archives. After this operation, 2344 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:3 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:4 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:5 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:6 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:7 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:8 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:9 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:10 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:12 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:13 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:14 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:15 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:26 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:28 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:29 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:30 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:31 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:36 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:37 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:38 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:39 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:40 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:43 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:44 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:45 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:46 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:47 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:50 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:51 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:52 http://deb.debian.org/debian buster/main amd64 python3-click all 7.0-1 [73.6 kB] Get:53 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.1 MB in 0s (44.0 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12281 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.4-3_amd64.deb ... Unpacking libaudit1:amd64 (1:2.8.4-3) over (1:2.6.7-2) ... Setting up libaudit1:amd64 (1:2.8.4-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12281 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (2.8-1+b1) over (2.6-3+b3) ... Setting up libselinux1:amd64 (2.8-1+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12278 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_amd64.deb ... Unpacking libsemanage1:amd64 (2.8-2) over (2.6-2) ... Setting up libsemanage1:amd64 (2.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12277 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.6-9.2~deb10u1_amd64.deb ... Unpacking bzip2 (1.0.6-9.2~deb10u1) over (1.0.6-8.1) ... Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u1) over (1.0.6-8.1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u1) ... (Reading database ... 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Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12279 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.4-5+deb10u1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.4-5+deb10u1) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.8.4-5+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12279 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.3-1+deb10u1_amd64.deb ... Unpacking liblz4-1:amd64 (1.8.3-1+deb10u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (1.8.3-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12278 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.4-1+deb10u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.4-1+deb10u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.4-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12277 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12277 files and directories currently installed.) Preparing to unpack .../00-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) over (7.0-3) ... Preparing to unpack .../01-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) over (1:5.30-1+deb9u3) ... Preparing to unpack .../02-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) over (1:5.30-1+deb9u3) ... Preparing to unpack .../03-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) over (1:5.30-1+deb9u3) ... dpkg: considering deconfiguration of manpages-dev, which would be broken by installation of manpages ... dpkg: yes, will deconfigure manpages-dev (broken by manpages) Preparing to unpack .../04-manpages_4.16-2_all.deb ... De-configuring manpages-dev (4.10-2) ... Unpacking manpages (4.16-2) over (4.10-2) ... Preparing to unpack .../05-manpages-dev_4.16-2_all.deb ... Unpacking manpages-dev (4.16-2) over (4.10-2) ... Preparing to unpack .../06-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) over (3.60) ... Preparing to unpack .../07-xz-utils_5.2.4-1+deb10u1_amd64.deb ... Unpacking xz-utils (5.2.4-1+deb10u1) over (5.2.2-1.2+b1) ... Preparing to unpack .../08-dh-python_3.20190308_all.deb ... Unpacking dh-python (3.20190308) over (2.20170125) ... Preparing to unpack .../09-libgmp10_2%3a6.1.2+dfsg-4+deb10u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) over (2:6.1.2+dfsg-1) ... Preparing to unpack .../10-libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) over (2.4.2-1) ... Preparing to unpack .../11-linux-libc-dev_4.19.249-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.19.249-2) over (4.9.228-1) ... Preparing to unpack .../12-multiarch-support_2.28-10+deb10u1_amd64.deb ... Unpacking multiarch-support (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../13-python3-click_7.0-1_all.deb ... Unpacking python3-click (7.0-1) over (6.6-1) ... Preparing to unpack .../14-python3-decorator_4.3.0-1.1_all.deb ... Unpacking python3-decorator (4.3.0-1.1) over (4.0.11-1) ... Setting up readline-common (7.0-5) ... Setting up manpages (4.16-2) ... Setting up mime-support (3.62) ... Installing new version of config file /etc/mime.types ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up python3-click (7.0-1) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up bzip2 (1.0.6-9.2~deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up xz-utils (5.2.4-1+deb10u1) ... Setting up manpages-dev (4.16-2) ... Setting up dh-python (3.20190308) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up file (1:5.35-4+deb10u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'upgrade'] 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-yf', 'dist-upgrade'] 1m16.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: dh-python libblas-common libgfortran3 libpython3.5-minimal libpython3.5-stdlib python3-distutils python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp-8 e2fsprogs-l10n fdisk fontconfig-config fonts-lyx g++-8 gcc-7-base gcc-8 gcc-8-base javascript-common libaec0 libasan5 libbinutils libblosc1 libbsd0 libcom-err2 libext2fs2 libffi6 libfontconfig1 libfreetype6 libgcc-8-dev libgfortran5 libgnutls30 libgpg-error-l10n libgpm2 libhdf5-103 libhogweed4 libicu63 libidn2-0 libimagequant0 libisl19 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblcms2-2 liblzo2-2 libmpfr6 libncursesw6 libnettle6 libp11-kit0 libpng16-16 libpython3.7-minimal libpython3.7-stdlib libseccomp2 libsnappy1v5 libstdc++-8-dev libsz2 libtasn1-6 libtcl8.6 libtiff5 libtinfo6 libtk8.6 libubsan1 libunistring2 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libzstd1 lsb-base openssl python-matplotlib-data python-tables-data python3-bs4 python3-chardet python3-cycler python3-dateutil python3-distutils python3-html5lib python3-kiwisolver python3-lib2to3 python3-lxml python3-matplotlib python3-numexpr python3-olefile python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-pyparsing python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-tz python3-webencodings python3.7 python3.7-minimal tk8.6-blt2.5 ttf-bitstream-vera tzdata ucf x11-common The following packages will be upgraded: apt bash binutils biom-format-tools coreutils cpp dash dpkg e2fslibs e2fsprogs g++ gcc gpgv libapt-pkg5.0 libatomic1 libblas3 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcilkrts5 libcomerr2 libexpat1 libfdisk1 libgcc1 libgomp1 libgpg-error0 libitm1 liblapack3 liblsan0 libmount1 libmpc3 libmpx2 libncursesw5 libpam-modules libpam-modules-bin libpython3-stdlib libquadmath0 libreadline7 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++6 libsystemd0 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 login mount ncurses-base ncurses-bin perl-base python3 python3-biom-format python3-future python3-minimal python3-numpy python3-scipy util-linux 64 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 128 MB of archives. After this operation, 318 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:5 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:21 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:24 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:27 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:28 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:32 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:33 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:40 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:41 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:42 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:43 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:44 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:45 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:48 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:54 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:55 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:56 http://deb.debian.org/debian buster/main amd64 biom-format-tools amd64 2.1.7+dfsg-2 [14.1 kB] Get:57 http://deb.debian.org/debian buster/main amd64 python3-biom-format amd64 2.1.7+dfsg-2 [135 kB] Get:58 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:59 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:60 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:64 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:68 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:69 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:70 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:71 http://deb.debian.org/debian buster/main amd64 python3-future all 0.16.0-1 [346 kB] Get:72 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:73 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:74 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:75 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get:76 http://deb.debian.org/debian buster/main amd64 python3-pandas-lib amd64 0.23.3+dfsg-3 [3475 kB] Get:77 http://deb.debian.org/debian buster/main amd64 python3-pandas all 0.23.3+dfsg-3 [1750 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:80 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:81 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:82 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:84 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:88 http://deb.debian.org/debian buster/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:89 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:100 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:101 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:104 http://deb.debian.org/debian buster/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [587 kB] Get:105 http://deb.debian.org/debian buster/main amd64 blt amd64 2.5.3+dfsg-4 [14.8 kB] Get:106 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:107 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:111 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:112 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:113 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:114 http://deb.debian.org/debian buster/main amd64 fonts-lyx all 2.3.2-1 [199 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:119 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:120 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:125 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:126 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:127 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:128 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:129 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:130 http://deb.debian.org/debian buster/main amd64 gcc-7-base amd64 7.4.0-6 [190 kB] Get:131 http://deb.debian.org/debian buster/main amd64 javascript-common all 11 [6120 B] Get:132 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libsnappy1v5 amd64 1.1.7-1 [17.0 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libblosc1 amd64 1.15.1+ds1-1 [44.9 kB] Get:135 http://deb.debian.org/debian buster/main amd64 libcilkrts5 amd64 7.4.0-6 [42.2 kB] Get:136 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:139 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:143 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:146 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:147 http://deb.debian.org/debian buster/main amd64 liblzo2-2 amd64 2.10-0.1 [56.1 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libubsan0 amd64 7.4.0-6 [124 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:152 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get:155 http://deb.debian.org/debian buster/main amd64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get:156 http://deb.debian.org/debian buster/main amd64 python-tables-data all 3.4.4-2 [53.1 kB] Get:157 http://deb.debian.org/debian buster/main amd64 python3-soupsieve all 1.8+dfsg-1 [27.6 kB] Get:158 http://deb.debian.org/debian buster/main amd64 python3-bs4 all 4.7.1-1 [94.1 kB] Get:159 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:160 http://deb.debian.org/debian buster/main amd64 python3-cycler all 0.10.0-1 [7556 B] Get:161 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:162 http://deb.debian.org/debian buster/main amd64 python3-webencodings all 0.5.1-1 [10.9 kB] Get:163 http://deb.debian.org/debian buster/main amd64 python3-html5lib all 1.0.1-1 [89.5 kB] Get:164 http://deb.debian.org/debian buster/main amd64 python3-kiwisolver amd64 1.0.1-2+b1 [65.4 kB] Get:165 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u4 [1163 kB] Get:166 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:167 http://deb.debian.org/debian buster/main amd64 python3-matplotlib amd64 3.0.2-2 [5353 kB] Get:168 http://deb.debian.org/debian buster/main amd64 python3-numexpr amd64 2.6.9-1 [140 kB] Get:169 http://deb.debian.org/debian buster/main amd64 python3-olefile all 0.46-1 [35.9 kB] Get:170 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:171 http://deb.debian.org/debian buster/main amd64 python3-tables-lib amd64 3.4.4-2 [438 kB] Get:172 http://deb.debian.org/debian buster/main amd64 python3-tables all 3.4.4-2 [342 kB] Get:173 http://deb.debian.org/debian buster/main amd64 python3-tk amd64 3.7.3-1 [97.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 128 MB in 4s (25.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12411 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.28-10+deb10u1_amd64.deb ... Unpacking libc6-dev:amd64 (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../libc-dev-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-dev-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../libc6_2.28-10+deb10u1_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc6:amd64 (2.28-10+deb10u1) ... Installing new version of config file /etc/ld.so.conf.d/x86_64-linux-gnu.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12460 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc-bin (2.28-10+deb10u1) ... Updating /etc/nsswitch.conf to current default. Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12460 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.3.0-6_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-6) ... Setting up gcc-8-base:amd64 (8.3.0-6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12494 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... Selecting previously unselected package libidn2-0:amd64. (Reading database ... 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Setting up python3.7-minimal (3.7.3-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13087 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) over (3.5.3-1) ... Setting up python3-minimal (3.7.3-1) ... (Reading database ... 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Installing new version of config file /etc/cron.daily/apt-compat ... Setting up libgpm2:amd64 (1.20.7-5) ... Setting up e2fslibs:amd64 (1.44.5-1+deb10u3) ... Setting up e2fsprogs-l10n (1.44.5-1+deb10u3) ... Setting up fonts-lyx (2.3.2-1) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up binutils-common:amd64 (2.31.1-16) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up liblzo2-2:amd64 (2.10-0.1) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up libsnappy1v5:amd64 (1.1.7-1) ... Setting up tzdata (2021a-0+deb10u6) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 6 20:12:30 UTC 2023. Universal Time is now: Mon Feb 6 20:12:30 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:amd64 (8.3.0-6) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up gcc-7-base:amd64 (7.4.0-6) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libmpfr6:amd64 (4.0.2-1) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (8.3.0-6) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up util-linux (2.33.1-0.1) ... update-alternatives: warning: alternative /usr/bin/pg (part of link group pager) doesn't exist; removing from list of alternatives Setting up ucf (3.0038+nmu1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libmpx2:amd64 (8.3.0-6) ... Setting up libubsan1:amd64 (8.3.0-6) ... Setting up libisl19:amd64 (0.20-2) ... Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up libcilkrts5:amd64 (7.4.0-6) ... Setting up libubsan0:amd64 (7.4.0-6) ... Setting up libblosc1 (1.15.1+ds1-1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up libbinutils:amd64 (2.31.1-16) ... Setting up cpp-8 (8.3.0-6) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up python-matplotlib-data (3.0.2-2) ... Setting up openssl (1.1.1n-0+deb10u3) ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up python-tables-data (3.4.4-2) ... Setting up libcc1-0:amd64 (8.3.0-6) ... Setting up liblsan0:amd64 (8.3.0-6) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libitm1:amd64 (8.3.0-6) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Setting up binutils (2.31.1-16) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up cpp (4:8.3.0-1) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gcc-8 (8.3.0-6) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up python3-webencodings (0.5.1-1) ... Setting up python3-tz (2019.1-1) ... Setting up gcc (4:8.3.0-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-pil:amd64 (5.4.1-2+deb10u3) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-html5lib (1.0.1-1) ... Setting up g++-8 (8.3.0-6) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u4) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-soupsieve (1.8+dfsg-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up python3-olefile (0.46-1) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up python3-bs4 (4.7.1-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up g++ (4:8.3.0-1) ... Setting up python3-future (0.16.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... Setting up python3-matplotlib (3.0.2-2) ... Setting up python3-scipy (1.1.0-7) ... Setting up python3-tables-lib (3.4.4-2) ... Setting up blt (2.5.3+dfsg-4) ... Setting up python3-pandas-lib (0.23.3+dfsg-3) ... Setting up python3-tk:amd64 (3.7.3-1) ... Setting up python3-pandas (0.23.3+dfsg-3) ... Setting up python3-numexpr (2.6.9-1) ... Setting up python3-tables (3.4.4-2) ... Setting up python3-biom-format (2.1.7+dfsg-2) ... Setting up biom-format-tools (2.1.7+dfsg-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for mime-support (3.62) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-yf', 'dist-upgrade'] 1m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m16.9s DUMP: f6fc0f2636004ef589309651dfd778f4 - 1m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'show', '--no-all-versions', 'biom-format-tools'] 1m17.1s DUMP: Package: biom-format-tools Source: python-biom-format Version: 2.1.7+dfsg-2 Installed-Size: 22 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, python3:any, python3-biom-format (= 2.1.7+dfsg-2) Description-en: command-line tools for BIOM format The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the command-line tools for the BIOM format Python package. Description-md5: daa62587623a0ed8c537470ee5bfb0c4 Homepage: http://biom-format.org/ Section: misc Priority: optional Filename: pool/main/p/python-biom-format/biom-format-tools_2.1.7+dfsg-2_amd64.deb Size: 14140 MD5sum: 11fa255db19e4d3d92acaed8f058c8b8 SHA256: ef5f66f2bc1988f7582eebc7498f328b5054cf30daed1c007685c6fffb13f9f4 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'show', '--no-all-versions', 'biom-format-tools'] 1m17.1s INFO: apt-cache knows about the following packages: biom-format-tools 1m17.1s INFO: Running scripts pre_install 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_database-server'] 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_database-server'] 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_exceptions'] 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_exceptions'] 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_extras'] 1m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_extras'] 1m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture'] 1m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture'] 1m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy'] 1m17.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy'] 1m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy', 'biom-format-tools'] 1m17.3s DUMP: biom-format-tools: Installed: 2.1.7+dfsg-2 Candidate: 2.1.7+dfsg-2 Version table: *** 2.1.7+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy', 'biom-format-tools'] 1m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'install', 'biom-format-tools'] 1m17.7s DUMP: Reading package lists... Building dependency tree... Reading state information... biom-format-tools is already the newest version (2.1.7+dfsg-2). The following packages were automatically installed and are no longer required: dh-python libblas-common libgfortran3 libpython3.5-minimal libpython3.5-stdlib python3-distutils python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'install', 'biom-format-tools'] 1m17.7s INFO: Running scripts post_install 1m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_install_exceptions'] 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_install_exceptions'] 1m17.7s INFO: Running scripts post_distupgrade 1m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_exceptions'] 1m17.9s DUMP: Running pam-auth-update... 1m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_exceptions'] 1m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_zz_backports'] 1m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_distupgrade_zz_backports'] 1m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m18.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m19.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m19.4s INFO: Running scripts pre_install 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_database-server'] 1m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_database-server'] 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_exceptions'] 1m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_exceptions'] 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_extras'] 1m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_extras'] 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture'] 1m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture'] 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy'] 1m19.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy'] 1m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy', 'biom-format-tools'] 1m19.5s DUMP: biom-format-tools: Installed: 2.1.7+dfsg-2 Candidate: 2.1.7+dfsg-2 Version table: *** 2.1.7+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-cache', 'policy', 'biom-format-tools'] 1m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'install', 'biom-format-tools=2.1.7+dfsg-2'] 1m20.0s DUMP: Reading package lists... Building dependency tree... Reading state information... biom-format-tools is already the newest version (2.1.7+dfsg-2). The following packages were automatically installed and are no longer required: dh-python libblas-common libgfortran3 libpython3.5-minimal libpython3.5-stdlib python3-distutils python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', '-y', 'install', 'biom-format-tools=2.1.7+dfsg-2'] 1m20.0s INFO: Running scripts post_install 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_install_exceptions'] 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_install_exceptions'] 1m20.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m20.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m22.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', '-ac', '--ignore-obsolete'] 1m25.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', '-ac', '--ignore-obsolete'] 1m25.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m25.3s DUMP: 0.15.6 1m25.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m25.3s INFO: Running adequate version 0.15.6 now. 1m25.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'biom-format-tools'] 1m25.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'biom-format-tools'] 1m25.6s INFO: Running scripts pre_remove 1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_exceptions'] 1m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/pre_remove_exceptions'] 1m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m29.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed biom-format-tools biom-format-tools 2.1.7+dfsg-2 install ok installed blt blt 2.5.3+dfsg-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-6 cpp-6 6.3.0-18+deb9u1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed dh-python dh-python 3.20190308 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-lyx fonts-lyx 2.3.2-1 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-6 g++-6 6.3.0-18+deb9u1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-6 gcc-6 6.3.0-18+deb9u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-7-base:amd64 gcc-7-base 7.4.0-6 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libasan3:amd64 libasan3 6.3.0-18+deb9u1 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libblosc1 libblosc1 1.15.1+ds1-1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcilkrts5:amd64 libcilkrts5 7.4.0-6 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libgcc-6-dev:amd64 libgcc-6-dev 6.3.0-18+deb9u1 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libisl15:amd64 libisl15 0.18-1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-0.1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.5-minimal:amd64 libpython3.5-minimal 3.5.3-1+deb9u1 install ok installed libpython3.5-stdlib:amd64 libpython3.5-stdlib 3.5.3-1+deb9u1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.7-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++-6-dev:amd64 libstdc++-6-dev 6.3.0-18+deb9u1 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libubsan0:amd64 libubsan0 7.4.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u1 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.32-2.2~deb10u1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed python-matplotlib-data python-matplotlib-data 3.0.2-2 install ok installed python-tables-data python-tables-data 3.4.4-2 install ok installed python3 python3 3.7.3-1 install ok installed python3-biom-format python3-biom-format 2.1.7+dfsg-2 install ok installed python3-bs4 python3-bs4 4.7.1-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-click python3-click 7.0-1 install ok installed python3-colorama python3-colorama 0.3.7-1 install ok installed python3-cycler python3-cycler 0.10.0-1 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-future python3-future 0.16.0-1 install ok installed python3-html5lib python3-html5lib 1.0.1-1 install ok installed python3-kiwisolver python3-kiwisolver 1.0.1-2+b1 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-lxml:amd64 python3-lxml 4.3.2-1+deb10u4 install ok installed python3-matplotlib python3-matplotlib 3.0.2-2 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-numexpr python3-numexpr 2.6.9-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-olefile python3-olefile 0.46-1 install ok installed python3-pandas python3-pandas 0.23.3+dfsg-3 install ok installed python3-pandas-lib python3-pandas-lib 0.23.3+dfsg-3 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-soupsieve python3-soupsieve 1.8+dfsg-1 install ok installed python3-tables python3-tables 3.4.4-2 install ok installed python3-tables-lib python3-tables-lib 3.4.4-2 install ok installed python3-tk:amd64 python3-tk 3.7.3-1 install ok installed python3-tz python3-tz 2019.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-1 install ok installed python3.5 python3.5 3.5.3-1+deb9u1 install ok installed python3.5-minimal python3.5-minimal 3.5.3-1+deb9u1 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 1m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-6', 'cpp-8', 'dh-python', 'file', 'fontconfig-config', 'fonts-lyx', 'g++-', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'javascript-common', 'libaec0:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'python-matplotlib-data', 'python-tables-data', 'python3', 'python3-biom-format', 'python3-bs4', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-html5lib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'x11-common', 'xz-utils', 'biom-format-tools'] 1m34.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu biom-format-tools blt bzip2 cpp cpp-6 cpp-8 dh-python file fontconfig-config fonts-lyx g++ g++-6 g++-8 gcc gcc-6 gcc-7-base gcc-8 javascript-common libaec0 libasan3 libasan5 libatomic1 libbinutils libblas-common libblas3 libblosc1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1 libfontconfig1 libfreetype6 libgcc-6-dev libgcc-8-dev libgfortran3 libgfortran5 libgomp1 libhdf5-103 libicu63 libimagequant0 libisl15 libisl19 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr4 libmpfr6 libmpx2 libpng16-16 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 libsnappy1v5 libsqlite3-0 libstdc++-6-dev libstdc++-8-dev libsz2 libtcl8.6 libtiff5 libtk8.6 libtsan0 libubsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 linux-libc-dev lsb-base manpages manpages-dev mime-support python-matplotlib-data python-tables-data python3 python3-biom-format python3-bs4 python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-html5lib python3-kiwisolver python3-lib2to3 python3-lxml python3-matplotlib python3-minimal python3-numexpr python3-numpy python3-olefile python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-pyparsing python3-scipy python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-tz python3-webencodings python3.5 python3.5-minimal python3.7 python3.7-minimal readline-common tk8.6-blt2.5 ttf-bitstream-vera tzdata ucf x11-common xz-utils 0 upgraded, 0 newly installed, 147 to remove and 0 not upgraded. After this operation, 549 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20584 files and directories currently installed.) Removing g++-6 (6.3.0-18+deb9u1) ... Removing gcc-6 (6.3.0-18+deb9u1) ... Removing g++ (4:8.3.0-1) ... Removing biom-format-tools (2.1.7+dfsg-2) ... Removing python3-tk:amd64 (3.7.3-1) ... Removing blt (2.5.3+dfsg-4) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing gcc (4:8.3.0-1) ... Removing cpp (4:8.3.0-1) ... Removing cpp-6 (6.3.0-18+deb9u1) ... Removing dh-python (3.20190308) ... Removing file (1:5.35-4+deb10u2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing python3-matplotlib (3.0.2-2) ... Removing python-matplotlib-data (3.0.2-2) ... Removing fonts-lyx (2.3.2-1) ... Removing g++-8 (8.3.0-6) ... Removing libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libubsan0:amd64 (7.4.0-6) ... Removing libcilkrts5:amd64 (7.4.0-6) ... Removing gcc-7-base:amd64 (7.4.0-6) ... Removing javascript-common (11) ... Removing python3-tables (3.4.4-2) ... Removing python3-tables-lib (3.4.4-2) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libasan3:amd64 (6.3.0-18+deb9u1) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing libblas-common (3.7.0-2) ... Removing python3-biom-format (2.1.7+dfsg-2) ... Removing python3-scipy (1.1.0-7) ... Removing python3-pandas (0.23.3+dfsg-3) ... Removing python3-pandas-lib (0.23.3+dfsg-3) ... Removing python3-numexpr (2.6.9-1) ... Removing python3-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libblosc1 (1.15.1+ds1-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing python3.5 (3.5.3-1+deb9u1) ... Removing python3.5-minimal (3.5.3-1+deb9u1) ... Removing python3-distutils (3.7.3-1) ... Removing python3-bs4 (4.7.1-1) ... Removing python3-soupsieve (1.8+dfsg-1) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing python3-lxml:amd64 (4.3.2-1+deb10u4) ... Removing libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libisl15:amd64 (0.18-1) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-jquery-ui (1.12.1+dfsg-5) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing liblzo2-2:amd64 (2.10-0.1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Removing libsnappy1v5:amd64 (1.1.7-1) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing python-tables-data (3.4.4-2) ... Removing python3-chardet (3.0.4-3) ... Removing python3-click (7.0-1) ... Removing python3-colorama (0.3.7-1) ... Removing python3-cycler (0.10.0-1) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-future (0.16.0-1) ... Removing python3-html5lib (1.0.1-1) ... Removing python3-kiwisolver (1.0.1-2+b1) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-olefile (0.46-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-six (1.12.0-1) ... Removing python3-tz (2019.1-1) ... Removing python3-webencodings (0.5.1-1) ... Removing ttf-bitstream-vera (1.10-8) ... Removing tzdata (2021a-0+deb10u6) ... Removing ucf (3.0038+nmu1) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp-8 (8.3.0-6) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing mime-support (3.62) ... Removing python3-minimal (3.7.3-1) ... Removing readline-common (7.0-5) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-6', 'cpp-8', 'dh-python', 'file', 'fontconfig-config', 'fonts-lyx', 'g++-', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'javascript-common', 'libaec0:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'python-matplotlib-data', 'python-tables-data', 'python3', 'python3-biom-format', 'python3-bs4', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-html5lib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'x11-common', 'xz-utils', 'biom-format-tools'] 1m34.4s INFO: Running scripts post_remove 1m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_remove_exceptions'] 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_remove_exceptions'] 1m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-6', 'cpp-8', 'dh-python', 'file', 'fontconfig-config', 'fonts-lyx', 'g++', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'javascript-common', 'libaec0:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'python-matplotlib-data', 'python-tables-data', 'python3', 'python3-biom-format', 'python3-bs4', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-html5lib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'x11-common', 'xz-utils'] 1m35.1s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-6 which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed dpkg: warning: ignoring request to remove dh-python which isn't installed dpkg: warning: ignoring request to remove file which isn't installed (Reading database ... 5043 files and directories currently installed.) Purging configuration files for fontconfig-config (2.13.1-2) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-6 which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-6 which isn't installed dpkg: warning: ignoring request to remove gcc-7-base which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan3 which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcilkrts5 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgcc-6-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl15 which isn't installed dpkg: warning: ignoring request to remove libisl19 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-5) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzo2-2 which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.35-4+deb10u2) ... dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmpx2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove libpython3.5-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-6-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-8-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for mime-support (3.62) ... Purging configuration files for python-matplotlib-data (3.0.2-2) ... dpkg: warning: ignoring request to remove python-tables-data which isn't installed Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-biom-format which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3.5 which isn't installed Purging configuration files for python3.5-minimal (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-6', 'cpp-8', 'dh-python', 'file', 'fontconfig-config', 'fonts-lyx', 'g++', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'javascript-common', 'libaec0:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'python-matplotlib-data', 'python-tables-data', 'python3', 'python3-biom-format', 'python3-bs4', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-html5lib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'x11-common', 'xz-utils'] 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--purge', 'biom-format-tools'] 1m35.1s DUMP: dpkg: warning: ignoring request to remove biom-format-tools which isn't installed 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--purge', 'biom-format-tools'] 1m35.1s INFO: Running scripts post_purge 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_purge_exceptions'] 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_purge_exceptions'] 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--purge', '--pending'] 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--purge', '--pending'] 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--remove', '--pending'] 1m35.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg', '--remove', '--pending'] 1m35.2s INFO: Running scripts post_test 1m35.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_test_exceptions'] 1m35.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'tmp/scripts/post_test_exceptions'] 1m35.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m35.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg-divert', '--list'] 1m35.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'dpkg-divert', '--list'] 1m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'clean'] 1m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu', 'apt-get', 'clean'] 1m35.5s DEBUG: Recording chroot state 1m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/shm'] 1m36.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/shm'] 1m36.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/console'] 1m36.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/console'] 1m36.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/ptmx'] 1m36.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/ptmx'] 1m36.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/pts'] 1m36.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/dev/pts'] 1m36.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/proc'] 1m36.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu/proc'] 1m36.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m36.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpo1b3vtzu'] 1m36.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpo1b3vtzu 1m36.4s INFO: PASS: Upgrading between Debian distributions. 1m36.4s INFO: PASS: All tests. 1m36.4s INFO: piuparts run ends. ret=0 End: 2023-02-06 20:13:05 GMT