Start: 2022-11-30 01:27:44 GMT [stretch] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.8.1+dfsg-2 Installed-Size: 10618 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.8.1+dfsg-2), libkdf5-dev (= 2.8.1+dfsg-2), libncbi-wvdb-dev (= 2.8.1+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: fd5ca8c780df37503bf62c080a3cb857 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb Size: 1450208 MD5sum: a785c231942687663655c820d039e4dc SHA256: be31d4602cd02fcf05cf04d2630566811cd008eeec7762903388332da9aae8c2 [buster] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 11392 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.9.3+dfsg-2), libkdf5-dev (= 2.9.3+dfsg-2), libncbi-wvdb-dev (= 2.9.3+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: fd5ca8c780df37503bf62c080a3cb857 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb Size: 1578076 MD5sum: 37b20b93ae9d9271c58cd5abb4f38cdc SHA256: 9566c1e71424d72fa6ba8e07e1646e10b6152a5c45fd9f787cd2ee69a56a8eb7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt libncbi-vdb-dev=2.9.3+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt libncbi-vdb-dev=2.9.3+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmph2cwtpmj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmph2cwtpmj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmph2cwtpmj/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'update'] 0m2.4s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'update'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s INFO: Running scripts pre_test 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_test_root_password'] 0m4.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_test_root_password'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m4.2s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.8.1+dfsg-2 Installed-Size: 10618 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.8.1+dfsg-2), libkdf5-dev (= 2.8.1+dfsg-2), libncbi-wvdb-dev (= 2.8.1+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) Much of the data submitted these days, for example in BAM, Illumina export.txt, and Complete Genomics formats, contain alignment information. With aligned data, NCBI uses Compression by Reference, which only stores the differences in base pairs between sequence data and the segment it aligns to. The process to restore original data, for example as FastQ, requires fast access to the reference sequences that the original data was aligned to. NCBI recommends that SRA users dedicate local disk space to store references downloaded from the NCBI SRA site. As of Fall 2014, the complete collection of these reference sequences is 66 GB. While it isn't usually necessary to download the entirety of the reference sequences, this should give you an idea of the scale of the storage requirement. By default, the Toolkit will download missing reference sequences on demand and cache them in the user's home directory. The location of this cache is configurable, as is whether the download is automatic or manual. . This is the development package. Description-md5: fd5ca8c780df37503bf62c080a3cb857 Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb Size: 1450208 MD5sum: a785c231942687663655c820d039e4dc SHA256: be31d4602cd02fcf05cf04d2630566811cd008eeec7762903388332da9aae8c2 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m4.2s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m4.2s INFO: Running scripts pre_install 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy'] 0m4.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m4.3s DUMP: libncbi-vdb-dev: Installed: (none) Candidate: 2.8.1+dfsg-2 Version table: 2.8.1+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m8.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bzip2-doc libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran3 libhdf5-100 libicu57 libkdf5-2 libkdf5-dev libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev manpages manpages-dev sgml-base xml-core zlib1g-dev Suggested packages: glibc-doc libmbedtls-doc man-browser sgml-base-doc debhelper The following NEW packages will be installed: bzip2-doc libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran3 libhdf5-100 libicu57 libkdf5-2 libkdf5-dev libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev manpages manpages-dev sgml-base xml-core zlib1g-dev 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. Need to get 23.4 MB of archives. After this operation, 95.9 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 manpages all 4.10-2 [1222 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 bzip2-doc all 1.0.6-8.1 [307 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libaec0 amd64 0.3.2-1 [18.5 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libsz2 amd64 0.3.2-1 [5730 B] Get:14 http://deb.debian.org/debian stretch/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-3+deb9u1 [1282 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libmbedcrypto0 amd64 2.4.2-1+deb9u3 [171 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libmbedx509-0 amd64 2.4.2-1+deb9u3 [70.7 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libmbedtls10 amd64 2.4.2-1+deb9u3 [102 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libmbedtls-dev amd64 2.4.2-1+deb9u3 [161 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libkdf5-2 amd64 2.8.1+dfsg-2 [13.6 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libkdf5-dev amd64 2.8.1+dfsg-2 [13.4 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libncbi-vdb2 amd64 2.8.1+dfsg-2 [1037 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libncbi-wvdb2 amd64 2.8.1+dfsg-2 [939 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libncbi-wvdb-dev amd64 2.8.1+dfsg-2 [1067 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libaec-dev amd64 0.3.2-1 [17.4 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libncbi-vdb-dev amd64 2.8.1+dfsg-2 [1450 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.4 MB in 0s (48.2 MB/s) Selecting previously unselected package sgml-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../01-libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../02-libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Selecting previously unselected package manpages. Preparing to unpack .../03-manpages_4.10-2_all.deb ... Unpacking manpages (4.10-2) ... Selecting previously unselected package bzip2-doc. Preparing to unpack .../04-bzip2-doc_1.0.6-8.1_all.deb ... Unpacking bzip2-doc (1.0.6-8.1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../05-libaec0_0.3.2-1_amd64.deb ... Unpacking libaec0:amd64 (0.3.2-1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../06-libc-dev-bin_2.24-11+deb9u4_amd64.deb ... Unpacking libc-dev-bin (2.24-11+deb9u4) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../07-linux-libc-dev_4.9.228-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.9.228-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../08-libc6-dev_2.24-11+deb9u4_amd64.deb ... Unpacking libc6-dev:amd64 (2.24-11+deb9u4) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../09-libbz2-dev_1.0.6-8.1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-8.1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../10-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../11-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../12-libsz2_0.3.2-1_amd64.deb ... Unpacking libsz2:amd64 (0.3.2-1) ... Selecting previously unselected package libhdf5-100:amd64. Preparing to unpack .../13-libhdf5-100_1.10.0-patch1+docs-3+deb9u1_amd64.deb ... Unpacking libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Selecting previously unselected package libmbedcrypto0:amd64. Preparing to unpack .../14-libmbedcrypto0_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../15-libmbedx509-0_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedtls10:amd64. Preparing to unpack .../16-libmbedtls10_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedtls-dev:amd64. Preparing to unpack .../17-libmbedtls-dev_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libkdf5-2. Preparing to unpack .../18-libkdf5-2_2.8.1+dfsg-2_amd64.deb ... Unpacking libkdf5-2 (2.8.1+dfsg-2) ... Selecting previously unselected package libkdf5-dev. Preparing to unpack .../19-libkdf5-dev_2.8.1+dfsg-2_amd64.deb ... Unpacking libkdf5-dev (2.8.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb2. Preparing to unpack .../20-libncbi-vdb2_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb2 (2.8.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb2. Preparing to unpack .../21-libncbi-wvdb2_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb2 (2.8.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb-dev. Preparing to unpack .../22-libncbi-wvdb-dev_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb-dev (2.8.1+dfsg-2) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../23-libaec-dev_0.3.2-1_amd64.deb ... Unpacking libaec-dev:amd64 (0.3.2-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../24-zlib1g-dev_1%3a1.2.8.dfsg-5_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Selecting previously unselected package libncbi-vdb-dev. Preparing to unpack .../25-libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb-dev (2.8.1+dfsg-2) ... Selecting previously unselected package manpages-dev. Preparing to unpack .../26-manpages-dev_4.10-2_all.deb ... Unpacking manpages-dev (4.10-2) ... Selecting previously unselected package xml-core. Preparing to unpack .../27-xml-core_0.17_all.deb ... Unpacking xml-core (0.17) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up manpages (4.10-2) ... Setting up libaec0:amd64 (0.3.2-1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up linux-libc-dev:amd64 (4.9.228-1) ... Setting up sgml-base (1.29) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up bzip2-doc (1.0.6-8.1) ... Setting up libncbi-wvdb2 (2.8.1+dfsg-2) ... Setting up libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up xml-core (0.17) ... Setting up manpages-dev (4.10-2) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libbz2-dev:amd64 (1.0.6-8.1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Setting up libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Setting up libncbi-wvdb-dev (2.8.1+dfsg-2) ... Setting up libaec-dev:amd64 (0.3.2-1) ... Setting up libncbi-vdb2 (2.8.1+dfsg-2) ... Setting up libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Setting up libkdf5-2 (2.8.1+dfsg-2) ... Setting up libkdf5-dev (2.8.1+dfsg-2) ... Setting up libncbi-vdb-dev (2.8.1+dfsg-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m8.0s INFO: Running scripts post_install 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m8.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmph2cwtpmj to buster 0m8.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m8.4s INFO: Running scripts pre_distupgrade 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'update'] 0m11.5s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 2s (5969 kB/s) Reading package lists... 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'update'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'upgrade'] 0m17.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages have been kept back: apt bash coreutils dash dpkg e2fslibs e2fsprogs gpgv libapt-pkg5.0 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libfdisk1 libgcc1 libgpg-error0 libkdf5-2 libkdf5-dev libmbedtls-dev libmbedx509-0 libmount1 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libncursesw5 libpam-modules libpam-modules-bin libquadmath0 libsmartcols1 libss2 libstdc++6 libsystemd0 libtinfo5 libudev1 libuuid1 libxml2 login mount ncurses-base ncurses-bin perl-base util-linux The following packages will be upgraded: adduser base-files base-passwd bsdutils bzip2-doc debconf debian-archive-keyring debianutils diffutils findutils grep gzip hostname init-system-helpers libacl1 libaec-dev libaec0 libattr1 libaudit-common libaudit1 libbz2-1.0 libbz2-dev libcap-ng0 libdb5.3 libdebconfclient0 libgcrypt20 liblz4-1 liblzma5 libpam-runtime libpam0g libpcre3 libselinux1 libsemanage-common libsemanage1 libsepol1 libsz2 linux-libc-dev manpages manpages-dev multiarch-support passwd sed sensible-utils sysvinit-utils tar xml-core zlib1g zlib1g-dev 48 upgraded, 0 newly installed, 0 to remove and 45 not upgraded. Need to get 13.6 MB of archives. After this operation, 2010 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:3 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:4 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:5 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:6 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:7 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:8 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:9 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:10 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:12 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:13 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:14 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:15 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:28 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:29 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:30 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:31 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:36 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:37 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:38 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u1 [210 kB] Get:39 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:40 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:41 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:42 http://deb.debian.org/debian buster/main amd64 bzip2-doc all 1.0.6-9.2~deb10u1 [493 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:46 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:47 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:48 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.6 MB in 0s (95.2 MB/s) (Reading database ... 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Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... 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Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) ... dpkg: considering deconfiguration of manpages-dev, which would be broken by installation of manpages ... dpkg: yes, will deconfigure manpages-dev (broken by manpages) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8888 files and directories currently installed.) Preparing to unpack .../0-manpages_4.16-2_all.deb ... De-configuring manpages-dev (4.10-2) ... Unpacking manpages (4.16-2) over (4.10-2) ... Preparing to unpack .../1-manpages-dev_4.16-2_all.deb ... Unpacking manpages-dev (4.16-2) over (4.10-2) ... Preparing to unpack .../2-bzip2-doc_1.0.6-9.2~deb10u1_all.deb ... Unpacking bzip2-doc (1.0.6-9.2~deb10u1) over (1.0.6-8.1) ... Preparing to unpack .../3-libaec-dev_1.0.2-1_amd64.deb ... Unpacking libaec-dev:amd64 (1.0.2-1) over (0.3.2-1) ... Preparing to unpack .../4-libaec0_1.0.2-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.2-1) over (0.3.2-1) ... Preparing to unpack .../5-libsz2_1.0.2-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.2-1) over (0.3.2-1) ... Preparing to unpack .../6-linux-libc-dev_4.19.249-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.19.249-2) over (4.9.228-1) ... Preparing to unpack .../7-multiarch-support_2.28-10+deb10u1_amd64.deb ... Unpacking multiarch-support (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../8-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) over (0.17) ... Setting up manpages (4.16-2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Processing triggers for sgml-base (1.29) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up bzip2-doc (1.0.6-9.2~deb10u1) ... Setting up xml-core (0.18+nmu1) ... Setting up manpages-dev (4.16-2) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Processing triggers for sgml-base (1.29) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'upgrade'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-yf', 'dist-upgrade'] 0m28.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgfortran3 libicu57 libmbedcrypto0 libmbedtls10 sgml-base xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libhdf5-100 The following NEW packages will be installed: ca-certificates e2fsprogs-l10n fdisk gcc-8-base libcom-err2 libext2fs2 libffi6 libgfortran5 libgmp10 libgnutls30 libgpg-error-l10n libgpm2 libhdf5-103 libhogweed4 libicu63 libidn2-0 libmbedcrypto3 libmbedtls12 libncursesw6 libnettle6 libp11-kit0 libseccomp2 libssl1.1 libtasn1-6 libtinfo6 libunistring2 libzstd1 openssl The following packages will be upgraded: apt bash coreutils dash dpkg e2fslibs e2fsprogs gpgv libapt-pkg5.0 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libfdisk1 libgcc1 libgpg-error0 libkdf5-2 libkdf5-dev libmbedtls-dev libmbedx509-0 libmount1 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libncursesw5 libpam-modules libpam-modules-bin libquadmath0 libsmartcols1 libss2 libstdc++6 libsystemd0 libtinfo5 libudev1 libuuid1 libxml2 login mount ncurses-base ncurses-bin perl-base util-linux 45 upgraded, 28 newly installed, 1 to remove and 0 not upgraded. Need to get 47.7 MB of archives. After this operation, 67.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:5 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:22 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:25 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:28 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:29 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:33 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:34 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:41 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:42 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:43 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:44 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:45 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:46 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:49 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libmbedtls-dev amd64 2.16.0-1 [488 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libncbi-vdb-dev amd64 2.9.3+dfsg-2 [1578 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libncbi-vdb2 amd64 2.9.3+dfsg-2 [1132 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libncbi-wvdb-dev amd64 2.9.3+dfsg-2 [1157 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libncbi-wvdb2 amd64 2.9.3+dfsg-2 [1028 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libkdf5-dev amd64 2.9.3+dfsg-2 [16.5 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libkdf5-2 amd64 2.9.3+dfsg-2 [17.0 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:69 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:70 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:71 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.7 MB in 1s (47.2 MB/s) (Reading 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Setting up libc6:amd64 (2.28-10+deb10u1) ... Installing new version of config file /etc/ld.so.conf.d/x86_64-linux-gnu.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9072 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc-bin (2.28-10+deb10u1) ... Updating /etc/nsswitch.conf to current default. Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9072 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.3.0-6_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-6) ... Setting up gcc-8-base:amd64 (8.3.0-6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9078 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9088 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-4_amd64.deb ... Unpacking bash (5.0-4) over (4.4-5) ... Setting up bash (5.0-4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9095 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-4+deb10u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Selecting previously unselected package libnettle6:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9109 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.4.1-1+deb10u1_amd64.deb ... Unpacking libhogweed4:amd64 (3.4.1-1+deb10u1) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9112 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... Selecting previously unselected package libidn2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9118 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... Selecting previously unselected package libffi6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9152 files and directories currently installed.) Preparing to unpack .../libffi6_3.2.1-9_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-9) ... Setting up libffi6:amd64 (3.2.1-9) ... Selecting previously unselected package libp11-kit0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9157 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.15-2+deb10u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.15-2+deb10u1) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... Selecting previously unselected package libtasn1-6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9165 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3) ... Setting up libtasn1-6:amd64 (4.13-3) ... Selecting previously unselected package libgnutls30:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9174 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u8_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u8) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u8) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9202 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-4_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.3-4) ... Setting up libseccomp2:amd64 (2.3.3-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9189 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1+deb10u2_amd64.deb ... Unpacking gpgv (2.2.12-1+deb10u2) over (2.1.18-8~deb9u4) ... Setting up gpgv (2.2.12-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9189 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.3.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (8.3.0-6) over (6.3.0-18+deb9u1) ... Setting up libstdc++6:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9189 files and directories currently installed.) Preparing to unpack .../archives/apt_1.8.2.3_amd64.deb ... Unpacking apt (1.8.2.3) over (1.4.10) ... Preparing to unpack .../libapt-pkg5.0_1.8.2.3_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.8.2.3) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.8.2.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9217 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u8_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9217 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u8_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libudev1:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9217 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.19.8_amd64.deb ... Unpacking dpkg (1.19.8) over (1.18.25) ... Setting up dpkg (1.19.8) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9215 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-5_amd64.deb ... Unpacking dash (0.5.10.2-5) over (0.5.8-2.4) ... Setting up dash (0.5.10.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9216 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libcomerr2:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../libcom-err2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libcom-err2:amd64 (1.44.5-1+deb10u3) ... Setting up libcom-err2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9219 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fslibs:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libext2fs2:amd64. Preparing to unpack .../libext2fs2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.5-1+deb10u3) ... Setting up libext2fs2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9222 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fsprogs (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.44.5-1+deb10u3) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9205 files and directories currently installed.) Preparing to unpack .../libuuid1_2.33.1-0.1_amd64.deb ... Unpacking libuuid1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libuuid1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9205 files and directories currently installed.) Preparing to unpack .../libblkid1_2.33.1-0.1_amd64.deb ... Unpacking libblkid1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libblkid1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9205 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.33.1-0.1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libsmartcols1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9205 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.33.1-0.1_amd64.deb ... Unpacking libfdisk1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libfdisk1:amd64 (2.33.1-0.1) ... Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9205 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9214 files and directories currently installed.) Preparing to unpack .../libmount1_2.33.1-0.1_amd64.deb ... Unpacking libmount1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libmount1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9214 files and directories currently installed.) Preparing to unpack .../mount_2.33.1-0.1_amd64.deb ... Unpacking mount (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Preparing to unpack .../util-linux_2.33.1-0.1_amd64.deb ... Unpacking util-linux (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Replacing files in old package login (1:4.4-4.1) ... Selecting previously unselected package fdisk. Preparing to unpack .../fdisk_2.33.1-0.1_amd64.deb ... Unpacking fdisk (2.33.1-0.1) ... Setting up fdisk (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9231 files and directories currently installed.) Preparing to unpack .../login_1%3a4.5-1.1_amd64.deb ... Unpacking login (1:4.5-1.1) over (1:4.4-4.1) ... Setting up login (1:4.5-1.1) ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9219 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9221 files and directories currently installed.) Preparing to unpack .../perl-base_5.28.1-6+deb10u1_amd64.deb ... Unpacking perl-base (5.28.1-6+deb10u1) over (5.24.1-3+deb9u7) ... Setting up perl-base (5.28.1-6+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9249 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo5:amd64 (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up libtinfo5:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9247 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncursesw5:amd64 (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up libncursesw5:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9247 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u2_all.deb ... Unpacking ncurses-base (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up ncurses-base (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libmbedcrypto3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9249 files and directories currently installed.) Preparing to unpack .../00-libmbedcrypto3_2.16.0-1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.0-1) ... Preparing to unpack .../01-libmbedtls-dev_2.16.0-1_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.16.0-1) over (2.4.2-1+deb9u3) ... Preparing to unpack .../02-libmbedx509-0_2.16.0-1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.0-1) over (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedtls12:amd64. Preparing to unpack .../03-libmbedtls12_2.16.0-1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.0-1) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../04-libicu63_63.1-6+deb10u3_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u3) ... Preparing to unpack .../05-libxml2_2.9.4+dfsg1-7+deb10u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) over (2.9.4+dfsg1-2.2+deb9u2) ... Preparing to unpack .../06-libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-vdb-dev (2.9.3+dfsg-2) over (2.8.1+dfsg-2) ... Preparing to unpack .../07-libncbi-vdb2_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-vdb2 (2.9.3+dfsg-2) over (2.8.1+dfsg-2) ... Preparing to unpack .../08-libncbi-wvdb-dev_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb-dev (2.9.3+dfsg-2) over (2.8.1+dfsg-2) ... Preparing to unpack .../09-libncbi-wvdb2_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb2 (2.9.3+dfsg-2) over (2.8.1+dfsg-2) ... Preparing to unpack .../10-libkdf5-dev_2.9.3+dfsg-2_amd64.deb ... Unpacking libkdf5-dev (2.9.3+dfsg-2) over (2.8.1+dfsg-2) ... Preparing to unpack .../11-libquadmath0_8.3.0-6_amd64.deb ... Unpacking libquadmath0:amd64 (8.3.0-6) over (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../12-libgfortran5_8.3.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-6) ... Preparing to unpack .../13-libkdf5-2_2.9.3+dfsg-2_amd64.deb ... Unpacking libkdf5-2 (2.9.3+dfsg-2) over (2.8.1+dfsg-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9308 files and directories currently installed.) Removing libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Selecting previously unselected package libhdf5-103:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9294 files and directories currently installed.) Preparing to unpack .../libhdf5-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-10) ... Preparing to unpack .../libpam-modules-bin_1.3.1-5_amd64.deb ... Unpacking libpam-modules-bin (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam-modules-bin (1.3.1-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9308 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam-modules:amd64 (1.3.1-5) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/limits.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9309 files and directories currently installed.) Preparing to unpack .../libss2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libss2:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.44.5-1+deb10u3) ... Selecting previously unselected package libssl1.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9309 files and directories currently installed.) Preparing to unpack .../0-libssl1.1_1.1.1n-0+deb10u3_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Selecting previously unselected package openssl. Preparing to unpack .../1-openssl_1.1.1n-0+deb10u3_amd64.deb ... Unpacking openssl (1.1.1n-0+deb10u3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../2-ca-certificates_20200601~deb10u2_all.deb ... Unpacking ca-certificates (20200601~deb10u2) ... Selecting previously unselected package e2fsprogs-l10n. Preparing to unpack .../3-e2fsprogs-l10n_1.44.5-1+deb10u3_all.deb ... Unpacking e2fsprogs-l10n (1.44.5-1+deb10u3) ... Selecting previously unselected package libgpg-error-l10n. Preparing to unpack .../4-libgpg-error-l10n_1.35-1_all.deb ... Unpacking libgpg-error-l10n (1.35-1) ... Selecting previously unselected package libgpm2:amd64. Preparing to unpack .../5-libgpm2_1.20.7-5_amd64.deb ... Unpacking libgpm2:amd64 (1.20.7-5) ... Setting up apt (1.8.2.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Setting up libgpm2:amd64 (1.20.7-5) ... Setting up e2fslibs:amd64 (1.44.5-1+deb10u3) ... Setting up e2fsprogs-l10n (1.44.5-1+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up util-linux (2.33.1-0.1) ... update-alternatives: warning: alternative /usr/bin/pg (part of link group pager) doesn't exist; removing from list of alternatives Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up openssl (1.1.1n-0+deb10u3) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libmbedtls-dev:amd64 (2.16.0-1) ... Setting up libncbi-vdb2 (2.9.3+dfsg-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libncbi-wvdb2 (2.9.3+dfsg-2) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libncbi-wvdb-dev (2.9.3+dfsg-2) ... Setting up libkdf5-2 (2.9.3+dfsg-2) ... Setting up libkdf5-dev (2.9.3+dfsg-2) ... Setting up libncbi-vdb-dev (2.9.3+dfsg-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-yf', 'dist-upgrade'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m29.2s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m29.5s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 11392 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.9.3+dfsg-2), libkdf5-dev (= 2.9.3+dfsg-2), libncbi-wvdb-dev (= 2.9.3+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) Much of the data submitted these days, for example in BAM, Illumina export.txt, and Complete Genomics formats, contain alignment information. With aligned data, NCBI uses Compression by Reference, which only stores the differences in base pairs between sequence data and the segment it aligns to. The process to restore original data, for example as FastQ, requires fast access to the reference sequences that the original data was aligned to. NCBI recommends that SRA users dedicate local disk space to store references downloaded from the NCBI SRA site. As of Fall 2014, the complete collection of these reference sequences is 66 GB. While it isn't usually necessary to download the entirety of the reference sequences, this should give you an idea of the scale of the storage requirement. By default, the Toolkit will download missing reference sequences on demand and cache them in the user's home directory. The location of this cache is configurable, as is whether the download is automatic or manual. . This is the development package. Description-md5: fd5ca8c780df37503bf62c080a3cb857 Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb Size: 1578076 MD5sum: 37b20b93ae9d9271c58cd5abb4f38cdc SHA256: 9566c1e71424d72fa6ba8e07e1646e10b6152a5c45fd9f787cd2ee69a56a8eb7 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m29.5s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m29.5s INFO: Running scripts pre_install 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_database-server'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_database-server'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_exceptions'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_exceptions'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_extras'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_extras'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy'] 0m29.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m29.6s DUMP: libncbi-vdb-dev: Installed: 2.9.3+dfsg-2 Candidate: 2.9.3+dfsg-2 Version table: *** 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m30.0s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (2.9.3+dfsg-2). The following packages were automatically installed and are no longer required: libgfortran3 libicu57 libmbedcrypto0 libmbedtls10 sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m30.0s INFO: Running scripts post_install 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_install_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_install_exceptions'] 0m30.0s INFO: Running scripts post_distupgrade 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.4s DUMP: Running pam-auth-update... 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m31.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m31.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m31.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m31.6s INFO: Running scripts pre_install 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_database-server'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_database-server'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_exceptions'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_extras'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_extras'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy'] 0m31.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m31.7s DUMP: libncbi-vdb-dev: Installed: 2.9.3+dfsg-2 Candidate: 2.9.3+dfsg-2 Version table: *** 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=2.9.3+dfsg-2'] 0m32.0s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (2.9.3+dfsg-2). The following packages were automatically installed and are no longer required: libgfortran3 libicu57 libmbedcrypto0 libmbedtls10 sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=2.9.3+dfsg-2'] 0m32.0s INFO: Running scripts post_install 0m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_install_exceptions'] 0m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_install_exceptions'] 0m32.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m32.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m33.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', '-ac', '--ignore-obsolete'] 0m34.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', '-ac', '--ignore-obsolete'] 0m34.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.0s DUMP: 0.15.6 0m34.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.0s INFO: Running adequate version 0.15.6 now. 0m34.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'libncbi-vdb-dev'] 0m34.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'libncbi-vdb-dev'] 0m34.3s INFO: Running scripts pre_remove 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m35.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m35.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_exceptions'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/pre_remove_exceptions'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bzip2-doc bzip2-doc 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec-dev:amd64 libaec-dev 1.0.2-1 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libkdf5-2 libkdf5-2 2.9.3+dfsg-2 install ok installed libkdf5-dev libkdf5-dev 2.9.3+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmbedcrypto0:amd64 libmbedcrypto0 2.4.2-1+deb9u3 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls-dev:amd64 libmbedtls-dev 2.16.0-1 install ok installed libmbedtls10:amd64 libmbedtls10 2.4.2-1+deb9u3 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncbi-vdb-dev libncbi-vdb-dev 2.9.3+dfsg-2 install ok installed libncbi-vdb2 libncbi-vdb2 2.9.3+dfsg-2 install ok installed libncbi-wvdb-dev libncbi-wvdb-dev 2.9.3+dfsg-2 install ok installed libncbi-wvdb2 libncbi-wvdb2 2.9.3+dfsg-2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-1+deb10u1 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'remove', 'bzip2-doc', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'sgml-base', 'xml-core', 'zlib1g-dev:amd64', 'libncbi-vdb-dev'] 0m37.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bzip2-doc libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran3 libgfortran5 libhdf5-103 libicu57 libicu63 libkdf5-2 libkdf5-dev libmbedcrypto0 libmbedcrypto3 libmbedtls-dev libmbedtls10 libmbedtls12 libmbedx509-0 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev manpages manpages-dev sgml-base xml-core zlib1g-dev 0 upgraded, 0 newly installed, 32 to remove and 0 not upgraded. After this operation, 140 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9689 files and directories currently installed.) Removing bzip2-doc (1.0.6-9.2~deb10u1) ... Removing libncbi-vdb-dev (2.9.3+dfsg-2) ... Removing libaec-dev:amd64 (1.0.2-1) ... Removing libkdf5-dev (2.9.3+dfsg-2) ... Removing libkdf5-2 (2.9.3+dfsg-2) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libncbi-wvdb-dev (2.9.3+dfsg-2) ... Removing libncbi-wvdb2 (2.9.3+dfsg-2) ... Removing libncbi-vdb2 (2.9.3+dfsg-2) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Removing libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Removing libmbedtls-dev:amd64 (2.16.0-1) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'remove', 'bzip2-doc', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'sgml-base', 'xml-core', 'zlib1g-dev:amd64', 'libncbi-vdb-dev'] 0m37.3s INFO: Running scripts post_remove 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_remove_exceptions'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_remove_exceptions'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--purge', 'bzip2-doc', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'sgml-base', 'xml-core', 'zlib1g-dev:amd64'] 0m37.3s DUMP: dpkg: warning: ignoring request to remove bzip2-doc which isn't installed dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libkdf5-2 which isn't installed dpkg: warning: ignoring request to remove libkdf5-dev which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls-dev which isn't installed dpkg: warning: ignoring request to remove libmbedtls10 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb2 which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb-dev which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb2 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed (Reading database ... 5008 files and directories currently installed.) Purging configuration files for sgml-base (1.29) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--purge', 'bzip2-doc', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'sgml-base', 'xml-core', 'zlib1g-dev:amd64'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--purge', 'libncbi-vdb-dev'] 0m37.3s DUMP: dpkg: warning: ignoring request to remove libncbi-vdb-dev which isn't installed 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--purge', 'libncbi-vdb-dev'] 0m37.3s INFO: Running scripts post_purge 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_purge_exceptions'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_purge_exceptions'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--purge', '--pending'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--purge', '--pending'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--remove', '--pending'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg', '--remove', '--pending'] 0m37.4s INFO: Running scripts post_test 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_test_exceptions'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'tmp/scripts/post_test_exceptions'] 0m37.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m37.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg-divert', '--list'] 0m37.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'dpkg-divert', '--list'] 0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'clean'] 0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj', 'apt-get', 'clean'] 0m37.9s DEBUG: Recording chroot state 0m39.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/shm'] 0m39.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/shm'] 0m39.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/console'] 0m39.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/console'] 0m39.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/ptmx'] 0m39.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/ptmx'] 0m39.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/pts'] 0m39.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/dev/pts'] 0m39.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/proc'] 0m39.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj/proc'] 0m39.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m39.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph2cwtpmj'] 0m39.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmph2cwtpmj 0m39.2s INFO: PASS: Upgrading between Debian distributions. 0m39.2s INFO: PASS: All tests. 0m39.2s INFO: piuparts run ends. ret=0 End: 2022-11-30 01:28:24 GMT