Start: 2023-03-12 20:33:59 GMT [stretch] Package: med-cloud Source: debian-med Version: 3.0.1 Installed-Size: 35 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 3.0.1), med-config (= 3.0.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, biomaj, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, filo, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, giira, glam2, grinder, gromacs, hhsuite, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, pynast, python-biopython, python-cogent, python3-biopython, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tophat, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise, zalign Suggests: bagpipe, cufflinks, embassy-phylip, gmap, qiime, r-other-valdar-bagphenotype.library Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_3.0.1_all.deb Size: 15550 MD5sum: c030c33cd6cd52d6080fc4bf9eb979f1 SHA256: d6cd199748d3199304097d080797ccbab08fec6b411431003ce6ca55cd7f6cd8 [buster] Package: med-cloud Source: debian-med Version: 3.3 Installed-Size: 37 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-config (= 3.3), med-tasks (= 3.3) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, giira, glam2, grinder, gromacs, hhsuite, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, pynast, python-biopython, python-cogent, python3-biomaj3-cli, python3-biopython, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tophat, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise, zalign Suggests: bagpipe, cufflinks, embassy-phylip, gmap, qiime Description: Debian Med bioinformatics applications usable in cloud computing Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: optional Filename: pool/main/d/debian-med/med-cloud_3.3_all.deb Size: 17044 MD5sum: c594cf82f07cba8468eabaac91a25437 SHA256: ad79d990fc5ad88107744482ca476abebc70483b9ec4d036993c2cad972829e0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt med-cloud=3.3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt med-cloud=3.3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1rznhz_y 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1rznhz_y 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1rznhz_y/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'update'] 0m2.4s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'update'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s INFO: Running scripts post_setup 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s INFO: Running scripts pre_test 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_test_root_password'] 0m4.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_test_root_password'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m4.2s DUMP: Package: med-cloud Source: debian-med Version: 3.0.1 Installed-Size: 35 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-tasks (= 3.0.1), med-config (= 3.0.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, biomaj, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, filo, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, giira, glam2, grinder, gromacs, hhsuite, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, pynast, python-biopython, python-cogent, python3-biopython, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tophat, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise, zalign Suggests: bagpipe, cufflinks, embassy-phylip, gmap, qiime, r-other-valdar-bagphenotype.library Description-en: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: extra Filename: pool/main/d/debian-med/med-cloud_3.0.1_all.deb Size: 15550 MD5sum: c030c33cd6cd52d6080fc4bf9eb979f1 SHA256: d6cd199748d3199304097d080797ccbab08fec6b411431003ce6ca55cd7f6cd8 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 0m4.2s INFO: apt-cache knows about the following packages: med-cloud 0m4.2s INFO: Running scripts pre_install 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy'] 0m4.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy', 'med-cloud'] 0m4.4s DUMP: med-cloud: Installed: (none) Candidate: 3.0.1 Version table: 3.0.1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy', 'med-cloud'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'install', 'med-cloud'] 8m33.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: abyss acedb-other adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autodock autodock-vina autogrid autotools-dev bamtools bc bedtools beignet-opencl-icd binutils biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie bowtie2 boxshade build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cain cain-examples cain-solvers cassiopee cd-hit cdbfasta cdbs circos circos-tools clearcut clonalframe clustalo clustalw concavity conservation-code cpp cpp-6 cron cython datamash dbus dconf-gsettings-backend dconf-service default-jre default-jre-headless default-mysql-client dh-python dialign dialign-tx dialign-tx-data dirmngr discosnp disulfinder disulfinder-data dmidecode dnaclust dpkg-dev dssp dvipng embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate fakeroot fastdnaml fastlink fastqc fasttree fastx-toolkit ffindex file filo fitgcp flexbar fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre freecontact fsa g++ g++-6 gasic gawk gcc gcc-6 genometools genometools-common gff2aplot gff2ps gfortran gfortran-6 ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnome-icon-theme gnupg gnupg-agent gnupg-l10n graphviz grinder gromacs gromacs-data gsettings-desktop-schemas gsfonts gtk-update-icon-cache guile-2.0-libs hhsuite hhsuite-data hicolor-icon-theme hmmer hyphy-common hyphy-mpi icu-devtools idba imagemagick imagemagick-6-common imagemagick-6.q16 infernal ipython isympy isympy-common java-common java-wrappers javascript-common jellyfish junit4 kalign kissplice krb5-locales laptop-detect last-align libace-perl libaec0 libaio1 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libamd2 libanfo0 libann0 libapache-dbi-perl libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libart-2.0-2 libasan3 libasound2 libasound2-data libassuan0 libasyncns0 libatinject-jsr330-api-java libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libbambamc0 libbamtools2.4.0 libbcprov-java libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libblas-dev libblas3 libboost-filesystem1.62.0 libboost-iostreams1.62.0 libboost-mpi1.62.0 libboost-program-options1.62.0 libboost-regex1.62.0 libboost-serialization1.62.0 libboost-system1.62.0 libboost-thread1.62.0 libbsd-resource-perl libbsd0 libbytecode-java libbz2-dev libc-dev-bin libc6-dev libcache-cache-perl libcairo-gobject2 libcairo2 libcap2 libcarp-always-perl libcarp-clan-perl libcassie1v5 libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcilkrts5 libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcolamd2 libcolord2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-jexl2-java libcommons-logging-java libcommons-math3-java libcommons-net-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcroco3 libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libdata-dumper-simple-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdconf1 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdjvulibre-text libdjvulibre21 libdom4j-java libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl1-mesa libeigen3-dev libelf1 libelk0 libencode-locale-perl libepoxy0 liberror-perl libexpat1 libexpat1-dev libexporter-tiny-perl libfabric1 libfakeroot libfcgi-perl libffi6 libffindex0 libfftw3-double3 libfftw3-single3 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-homedir-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libfont-afm-perl libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0v5 libfreetype6 libfreezethaw-perl libfribidi0 libfuse2 libg20 libgail-common libgail18 libgbm1 libgc1c2 libgcc-6-dev libgd-graph-perl libgd-perl libgd-text-perl libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgetopt-euclid-perl libgetopt-simple-perl libgflags2v5 libgfortran-6-dev libgfortran3 libgif7 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglib2.0-0 libglib2.0-data libglpk-java libglpk40 libglu1-mesa libgmp10 libgnutls30 libgomp1 libgoogle-glog0v5 libgpm2 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgromacs2 libgs9 libgs9-common libgsasl7 libgsl2 libgssapi-krb5-2 libgtextutils0v5 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgts-0.7-5 libgts-bin libguava-java libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhdf5-100 libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhtsjdk-java libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu-dev libicu57 libidn11 libidn2-0 libijs-0.35 libilmbase12 libimport-into-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libipc-system-simple-perl libisl15 libisorelax-java libitm1 libjava-xmlbuilder-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjellyfish-2.0-2 libjemalloc1 libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-underscore libjsch-java libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libjsr305-java libjxr-tools libjxr0 libjzlib-java libk5crypto3 libkdf5-2 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 libksba8 libkyotocabinet16v5 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-allutils-perl liblist-moreutils-perl liblist-someutils-perl liblist-utilsby-perl libllvm3.9 liblocale-gettext-perl liblog4j1.2-java liblqr-1-0 liblsan0 libltdl7 liblua5.1-0 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickwand-6.q16-3 libmail-java libmailtools-perl libmailutils5 libmariadbclient18 libmath-bezier-perl libmath-derivative-perl libmath-random-mt-perl libmath-round-perl libmath-spline-perl libmath-tamuanova-perl libmath-vec-perl libmath-vecstat-perl libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libmime-tools-perl libmldbm-perl libmng1 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpdec2 libmpfr4 libmpx2 libmsv-java libmysql-java libncbi-vdb2 libncbi-wvdb2 libncbi6 libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetpbm10 libnettle6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk1 libnl-3-200 libnl-route-3-200 libnotify4 libnpth0 libnspr4 libnss3 libntlm0 libnuma1 libnumber-format-perl libogg0 libole-storage-lite-perl libopenexr22 libopenjp2-7 libopenmpi2 liboro-java libossp-uuid-perl libossp-uuid16 libp11-kit0 libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-validate-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libperl4-corelibs-perl libperl5.24 libperlio-gzip-perl libpicard-java libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpod-coverage-perl libpoppler64 libpopt0 libpostscript-perl libpotrace0 libpq5 libprocps6 libprotobuf10 libproxy1v5 libpsl5 libpsm-infinipath1 libptexenc1 libpth20 libpulse0 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libqt4-dbus libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libquadmath0 librdmacm1 libreadline-dev libreadline5 libreadline7 libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librest-0.7-0 librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby2.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonhe-java libscalar-list-utils-perl libsensors4 libservlet3.1-java libset-intspan-perl libset-scalar-perl libsigsegv2 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsndfile1 libsoap-lite-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsprng2 libsqlite3-0 libsquizz libssh2-1 libssl1.0.2 libssl1.1 libstaden-read11 libstatistics-basic-perl libstatistics-descriptive-perl libstdc++-6-dev libstrictures-perl libsub-exporter-progressive-perl libsub-name-perl libsuitesparseconfig4 libsvg-graph-perl libsvg-perl libsynctex1 libsz2 libtamuanova-0.2 libtask-weaken-perl libtasn1-6 libtbb2 libtcl8.6 libterm-readkey-perl libtest-pod-perl libtexlua52 libtexluajit2 libtext-format-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunistring0 libunwind8 liburi-perl libutempter0 libvorbis0a libvorbisenc2 libwayland-client0 libwayland-cursor0 libwayland-egl1-mesa libwayland-server0 libwebp6 libwebpdemux2 libwebpmux2 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0v5 libwxgtk3.0-0v5 libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lmodern loki lsb-base lua-filesystem lua-lpeg lua-md5 lynx lynx-common macs mafft mailutils mailutils-common make manpages manpages-dev mapsembler2 maq mariadb-client-10.1 mariadb-client-core-10.1 mariadb-common med-config med-tasks melting menu mime-support minia mipe mira-assembler mira-rfam-12s-rrna mlv-smile mothur mpi-default-bin mrbayes mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-epcr ncbi-tools-bin ncoils neobio netbase netpbm notification-daemon ocl-icd-libopencl1 openjdk-8-jre openjdk-8-jre-headless openmpi-bin openmpi-common openssl paraclu parallel parsinsert patch pdb2pqr perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk perm phylip phyml phyutility picard-tools pinentry-curses pkg-config plink poa poppler-data prank preview-latex-style prime-phylo primer3 probabel probalign probcons procps proda prodigal prosper ps2eps psmisc publicsuffix pynast python python-backports-shutil-get-terminal-size python-biopython python-biopython-doc python-cairo python-chardet python-cogent python-cycler python-dateutil python-decorator python-dev python-enum34 python-functools32 python-glade2 python-gmpy python-gobject-2 python-gtk2 python-htseq python-imaging python-ipython python-ipython-genutils python-matplotlib python-matplotlib-data python-minimal python-mpi4py python-mpmath python-networkx python-numpy python-pathlib2 python-pexpect python-pickleshare python-pil python-pkg-resources python-prompt-toolkit python-ptyprocess python-pyglet python-pygments python-pygraphviz python-pyparsing python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python-simplegeneric python-six python-subprocess32 python-sympy python-sympy-doc python-tk python-traitlets python-tz python-wcwidth python-wxgtk3.0 python-wxversion python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-biopython python3-minimal python3-numpy python3-pil python3-renderpm python3-reportlab python3-reportlab-accel python3.5 python3.5-minimal qdbus qt-at-spi qtchooser qtcore4-l10n r-base-core r-base-dev r-bioc-edger r-bioc-hilbertvis r-bioc-limma r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-g.data r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-multicore r-cran-nlme r-cran-nnet r-cran-permute r-cran-pvclust r-cran-qtl r-cran-rpart r-cran-spatial r-cran-survival r-cran-vegan r-doc-html r-other-mott-happy.hbrem r-recommended rake raster3d raxml readline-common readseq rename rnahybrid rtax ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools seqan-apps sgml-base shared-mime-info sibsim4 sigma-align sim4 smalt snap soapdenovo soapdenovo2 squizz sra-toolkit ssake staden-io-lib-utils sysstat t-coffee t1utils tabix tasksel tasksel-data tcl tcl8.6 tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat tree-puzzle tree-puzzle-doc ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera tzdata ucf unzip vcftools velvet wise wise-data x11-common x11-utils x11-xserver-utils xauth xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xterm xz-utils zalign zip zlib1g-dev Suggested packages: altree-examples ant-doc ant-gcj default-jdk | java-compiler | java-sdk libbcel-java ivy ant-optional-gcj antlr javacc junit jython libbsf-java libjaxp1.3-java libjdepend-java libxalan2-java apache2-doc apache2-suexec-pristine | apache2-suexec-custom autodocktools binutils-doc default-mysql-server | virtual-mysql-server groff-base gmap paml blends-doc blt-demo bowtie-examples bowtie2-examples seaview xfig devscripts clustalx pymol cpp-doc gcc-6-locales anacron logrotate checksecurity cython-doc default-dbus-session-bus | dbus-session-bus dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring embassy emboss-doc emboss-test eximon4 exim4-doc-html | exim4-doc-info spf-tools-perl swaks fastlink-doc fonts-noto fontforge bash-completion g++-multilib g++-6-multilib gcc-6-doc libstdc++6-6-dbg gawk-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev ghostscript-x parcimonie xloadimage scdaemon graphviz-doc tcsh | c-shell hmmer-doc imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils transfig ufraw-batch apache2 | lighttpd | httpd libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc nas libdigest-hmac-perl libgssapi-perl libaxis-java-doc libbcprov-java-doc libxml-sax-expatxs-perl java-virtual-machine libjgrapht-java libbiojava-java-doc liblapack-doc-man liblapack-doc glibc-doc colord libcommons-collections3-java-doc libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-discovery-java-doc libcommons-httpclient-java-doc libcommons-jexl2-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net-java-doc cups-common libnet-daemon-perl libsql-statement-perl libdom4j-java-doc libeigen3-doc libmrpt-dev libfftw3-bin libfftw3-dev fuse fonts-dustin libgd-tools libiodbc2-dev default-libmysqlclient-dev gnutls-bin gpm gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user gvfs libhsqldb-java-doc libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins icu-doc libdb-file-lock-perl libfile-readbackwards-perl libjava-xmlbuilder-java-doc libjcommon-java-doc libjdom1-java-doc libjgoodies-common-java-doc libjgoodies-forms-java-doc libjs-jquery-ui-docs libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc libcrypt-ssleay-perl liblzma-doc inkscape libmail-java-doc libmbedtls-doc libslf4j-java ncurses-doc uuid libscalar-number-perl pciutils pcscd pulseaudio qt4-qtconfig readline-doc librsvg2-bin libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp 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fonts-nanum njplot treeviewx probcons-extra pdf-viewer uclust python-doc python-mysqldb python-rdflib python-psycopg2 python-cogent-doc rdp-classifier python-cycler-doc python-enum34-doc python-gtk2-doc python-gmpy-doc python-gobject-2-dbg gir1.2-gtk-3.0 python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-nose python-qt4 python-sip python-tornado python-traits ttf-staypuft python-gmpy2 python-mpmath-doc python-networkx-doc python-numpy-dbg python-numpy-doc python-pexpect-doc python-pil-doc python-pil-dbg python-setuptools python-pygraphviz-doc python-pyparsing-doc python-renderpm-dbg python-egenix-mxtexttools python-reportlab-doc python-scipy-doc tix python-tk-dbg wx3.0-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3-matplotlib python3-rdflib python3-psycopg2 python3-scipy python3-dev python3-nose python3-numpy-dbg python3-pil-dbg python3-renderpm-dbg python3-egenix-mxtexttools python3.5-venv python3.5-doc ess r-doc-info | r-doc-pdf r-mathlib r-base-html debhelper texinfo r-bioc-iranges r-bioc-affy r-bioc-annotationdbi r-cran-biasedurn r-bioc-biobase r-cran-ellipse r-bioc-go.db r-cran-gplots r-cran-statmod r-cran-testthat r-cran-knitr raster3d-doc ri ruby-dev bundler sgml-base-doc ssake-examples staden-io-lib-examples isag t-coffee-examples tcl-tclreadline xpdf-reader | pdf-viewer chktex dvidvi fragmaster lacheck latexdiff latexmk purifyeps xindy psutils cm-super dot2tex prerex ruby-tcltk | libtcltk-ruby theseus-examples rasmol treetool velvet-example wise-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin xfonts-cyrillic The following NEW packages will be installed: abyss acedb-other adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autodock autodock-vina autogrid autotools-dev bamtools bc bedtools beignet-opencl-icd binutils biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie 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libfont-ttf-perl libfontconfig1 libfontenc1 libfreecontact0v5 libfreetype6 libfreezethaw-perl libfribidi0 libfuse2 libg20 libgail-common libgail18 libgbm1 libgc1c2 libgcc-6-dev libgd-graph-perl libgd-perl libgd-text-perl libgd3 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgetopt-euclid-perl libgetopt-simple-perl libgflags2v5 libgfortran-6-dev libgfortran3 libgif7 libgl1-mesa-dri libgl1-mesa-glx libglade2-0 libglapi-mesa libglib2.0-0 libglib2.0-data libglpk-java libglpk40 libglu1-mesa libgmp10 libgnutls30 libgomp1 libgoogle-glog0v5 libgpm2 libgraph-perl libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgraphviz-perl libgromacs2 libgs9 libgs9-common libgsasl7 libgsl2 libgssapi-krb5-2 libgtextutils0v5 libgtk-3-0 libgtk-3-bin libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgts-0.7-5 libgts-bin libguava-java libgvc6 libgvpr2 libhamcrest-java libharfbuzz-icu0 libharfbuzz0b libhdf5-100 libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libhsqldb-java libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhtsjdk-java libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu-dev libicu57 libidn11 libidn2-0 libijs-0.35 libilmbase12 libimport-into-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libipc-system-simple-perl libisl15 libisorelax-java libitm1 libjava-xmlbuilder-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjcode-pm-perl libjcommon-java libjdom1-java libjellyfish-2.0-2 libjemalloc1 libjets3t-java libjgoodies-common-java libjgoodies-forms-java libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-underscore libjsch-java libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libjsr305-java 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libptexenc1 libpth20 libpulse0 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libqt4-dbus libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libquadmath0 librdmacm1 libreadline-dev libreadline5 libreadline7 libreadonly-perl libregexp-common-perl libregexp-java librelaxng-datatype-java librest-0.7-0 librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libruby2.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libsaxonhe-java libscalar-list-utils-perl libsensors4 libservlet3.1-java libset-intspan-perl libset-scalar-perl libsigsegv2 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsndfile1 libsoap-lite-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsprng2 libsqlite3-0 libsquizz libssh2-1 libssl1.0.2 libssl1.1 libstaden-read11 libstatistics-basic-perl libstatistics-descriptive-perl libstdc++-6-dev libstrictures-perl libsub-exporter-progressive-perl libsub-name-perl libsuitesparseconfig4 libsvg-graph-perl libsvg-perl libsynctex1 libsz2 libtamuanova-0.2 libtask-weaken-perl libtasn1-6 libtbb2 libtcl8.6 libterm-readkey-perl libtest-pod-perl libtexlua52 libtexluajit2 libtext-format-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtre5 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunistring0 libunwind8 liburi-perl libutempter0 libvorbis0a libvorbisenc2 libwayland-client0 libwayland-cursor0 libwayland-egl1-mesa libwayland-server0 libwebp6 libwebpdemux2 libwebpmux2 libwmf0.2-7 libwrap0 libwsdl4j-java libwww-perl libwww-robotrules-perl libwxbase3.0-0v5 libwxgtk3.0-0v5 libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.1 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxom-java libxpm4 libxpp2-java libxpp3-java libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lmodern loki lsb-base lua-filesystem lua-lpeg lua-md5 lynx lynx-common macs mafft mailutils mailutils-common make manpages manpages-dev mapsembler2 maq mariadb-client-10.1 mariadb-client-core-10.1 mariadb-common med-cloud med-config med-tasks melting menu mime-support minia mipe mira-assembler mira-rfam-12s-rrna mlv-smile mothur mpi-default-bin mrbayes mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-epcr ncbi-tools-bin ncoils neobio netbase netpbm notification-daemon ocl-icd-libopencl1 openjdk-8-jre openjdk-8-jre-headless openmpi-bin openmpi-common openssl paraclu parallel parsinsert patch pdb2pqr perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk perm phylip phyml phyutility picard-tools pinentry-curses pkg-config plink poa poppler-data prank preview-latex-style prime-phylo primer3 probabel probalign probcons procps proda prodigal prosper ps2eps psmisc publicsuffix pynast python python-backports-shutil-get-terminal-size python-biopython python-biopython-doc python-cairo python-chardet python-cogent python-cycler python-dateutil python-decorator python-dev python-enum34 python-functools32 python-glade2 python-gmpy python-gobject-2 python-gtk2 python-htseq python-imaging python-ipython python-ipython-genutils python-matplotlib python-matplotlib-data python-minimal python-mpi4py python-mpmath python-networkx python-numpy python-pathlib2 python-pexpect python-pickleshare python-pil python-pkg-resources python-prompt-toolkit python-ptyprocess python-pyglet python-pygments python-pygraphviz python-pyparsing python-pysam python-renderpm python-reportlab python-reportlab-accel python-scipy python-simplegeneric python-six python-subprocess32 python-sympy python-sympy-doc python-tk python-traitlets python-tz python-wcwidth python-wxgtk3.0 python-wxversion python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-biopython python3-minimal python3-numpy python3-pil python3-renderpm python3-reportlab python3-reportlab-accel python3.5 python3.5-minimal qdbus qt-at-spi qtchooser qtcore4-l10n r-base-core r-base-dev r-bioc-edger r-bioc-hilbertvis r-bioc-limma r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-g.data r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-multicore r-cran-nlme r-cran-nnet r-cran-permute r-cran-pvclust r-cran-qtl r-cran-rpart r-cran-spatial r-cran-survival r-cran-vegan r-doc-html r-other-mott-happy.hbrem r-recommended rake raster3d raxml readline-common readseq rename rnahybrid rtax ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools seqan-apps sgml-base shared-mime-info sibsim4 sigma-align sim4 smalt snap soapdenovo soapdenovo2 squizz sra-toolkit ssake staden-io-lib-utils sysstat t-coffee t1utils tabix tasksel tasksel-data tcl tcl8.6 tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat tree-puzzle tree-puzzle-doc ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera tzdata ucf unzip vcftools velvet wise wise-data x11-common x11-utils x11-xserver-utils xauth xbitmaps xdg-user-dirs xdg-utils xkb-data xml-core xterm xz-utils zalign zip zlib1g-dev 0 upgraded, 1114 newly installed, 0 to remove and 0 not upgraded. Need to get 2126 MB of archives. After this operation, 5409 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 cron amd64 3.0pl1-128+deb9u1 [95.4 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 tasksel-data all 3.39 [18.1 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 tasksel all 3.39 [94.6 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 fonts-liberation all 1:1.07.4-2 [827 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 fonts-lato all 2.0-1 [2684 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libart-2.0-2 amd64 2.3.21-2 [72.7 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libaudio2 amd64 1.9.4-5+b1 [79.9 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libatk1.0-data all 2.22.0-1 [172 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libatk1.0-0 amd64 2.22.0-1 [78.4 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-common all 2.36.5-2+deb9u2 [311 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-0 amd64 2.36.5-2+deb9u2 [170 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-common all 2.24.31-2 [2693 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libavahi-common-data amd64 0.6.32-2 [118 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 hicolor-icon-theme all 0.15-1 [9550 B] Get:101 http://deb.debian.org/debian stretch/main amd64 gtk-update-icon-cache amd64 3.22.11-1 [76.6 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libcroco3 amd64 0.6.11-3 [143 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 librsvg2-2 amd64 2.40.16-1+b1 [281 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 librsvg2-common amd64 2.40.16-1+b1 [194 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 gnome-icon-theme all 3.12.0-2 [9890 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 adwaita-icon-theme all 3.22.0-1+deb9u1 [11.5 MB] Get:107 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-0 amd64 2.24.31-2 [1800 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libglade2-0 amd64 1:2.6.4-2 [81.8 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 liblqr-1-0 amd64 0.4.2-2+b2 [24.8 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libfftw3-double3 amd64 3.3.5-3 [731 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libopenjp2-7 amd64 2.1.2-1.1+deb9u4 [122 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 imagemagick-6-common all 8:6.9.7.4+dfsg-11+deb9u8 [185 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libmagickcore-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [1743 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libmagickwand-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [423 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libogg0 amd64 1.3.2-1 [19.9 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libpcrecpp0v5 amd64 2:8.39-3 [151 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 lua-md5 amd64 1.2+git+1+8d87fee-1 [13.1 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4 [32.4 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4 [63.2 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 libboost-iostreams1.62.0 amd64 1.62.0+dfsg-4 [50.8 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-4 [288 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 libboost-thread1.62.0 amd64 1.62.0+dfsg-4 [71.5 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 mira-assembler amd64 4.9.6-2 [2282 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 mira-rfam-12s-rrna all 4.9.6-2 [10.4 MB] Get:129 http://deb.debian.org/debian stretch/main amd64 poppler-data all 0.4.7-8 [1451 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 libpython3.5-minimal amd64 3.5.3-1+deb9u1 [573 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 python3.5-minimal amd64 3.5.3-1+deb9u1 [1691 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 python3-minimal amd64 3.5.3-1 [35.3 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 libpython3.5-stdlib amd64 3.5.3-1+deb9u1 [2167 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 python3.5 amd64 3.5.3-1+deb9u1 [229 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 libpython3-stdlib amd64 3.5.3-1 [18.6 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 dh-python all 2.20170125 [86.8 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 python3 amd64 3.5.3-1 [21.6 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 dmidecode amd64 3.0-4 [68.3 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 libassuan0 amd64 2.4.3-2 [42.5 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 libnpth0 amd64 1.3-1 [14.6 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 libpopt0 amd64 1.16-10+b2 [49.4 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:155 http://deb.debian.org/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:158 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libcap2 amd64 1:2.25-1 [16.8 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libgc1c2 amd64 1:7.4.2-8 [208 kB] Get:164 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libwrap0 amd64 7.6.q-26 [58.2 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 manpages all 4.10-2 [1222 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 make amd64 4.1-9.1 [302 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:185 http://deb.debian.org/debian stretch/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 abyss amd64 2.0.2-2 [1388 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 aevol amd64 4.4-1+b4 [426 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 libnspr4 amd64 2:4.12-6 [117 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 libnss3 amd64 2:3.26.2-1.1+deb9u1 [1161 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 ca-certificates-java all 20170929~deb9u3 [15.1 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 java-common all 0.58+deb9u1 [13.6 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libpcsclite1 amd64 1.8.20-1 [56.5 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:197 http://deb.debian.org/debian stretch/main amd64 openjdk-8-jre-headless amd64 8u252-b09-1~deb9u1 [27.4 MB] Get:198 http://deb.debian.org/debian stretch/main amd64 default-jre-headless amd64 2:1.8-58+deb9u1 [10.1 kB] Get:199 http://deb.debian.org/debian stretch/main amd64 libdrm2 amd64 2.4.74-1 [36.2 kB] Get:200 http://deb.debian.org/debian stretch/main amd64 libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:208 http://deb.debian.org/debian stretch/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 libatspi2.0-0 amd64 2.22.0-6+deb9u1 [60.9 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 libatk-bridge2.0-0 amd64 2.22.0-2 [56.3 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 libcairo-gobject2 amd64 1.14.8-1 [336 kB] Get:213 http://deb.debian.org/debian stretch/main amd64 libdconf1 amd64 0.26.0-2+b1 [37.6 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 dconf-service amd64 0.26.0-2+b1 [34.7 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 dconf-gsettings-backend amd64 0.26.0-2+b1 [26.4 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 libgtk-3-common all 3.22.11-1 [3416 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 libcolord2 amd64 1.3.3-2 [252 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 libepoxy0 amd64 1.3.1-2 [176 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-common all 1.2.6-1 [166 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-0 amd64 1.2.6-1 [178 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 libproxy1v5 amd64 0.4.14-2 [57.4 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 glib-networking-common all 2.50.0-1+deb9u1 [49.2 kB] Get:223 http://deb.debian.org/debian stretch/main amd64 glib-networking-services amd64 2.50.0-1+deb9u1 [12.2 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 gsettings-desktop-schemas all 3.22.0-1 [473 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 glib-networking amd64 2.50.0-1+deb9u1 [57.0 kB] Get:226 http://deb.debian.org/debian stretch/main amd64 libsoup2.4-1 amd64 2.56.0-2+deb9u2 [296 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 libsoup-gnome2.4-1 amd64 2.56.0-2+deb9u2 [16.4 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 librest-0.7-0 amd64 0.8.0-2 [33.0 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 libwayland-client0 amd64 1.12.0-1+deb9u1 [25.1 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 libwayland-cursor0 amd64 1.12.0-1+deb9u1 [13.5 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libwayland-server0 amd64 1.12.0-1+deb9u1 [30.6 kB] Get:232 http://deb.debian.org/debian stretch/main amd64 libgbm1 amd64 13.0.6-1+b2 [59.2 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 libxcb-xfixes0 amd64 1.12-1 [99.6 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 libegl1-mesa amd64 13.0.6-1+b2 [112 kB] Get:235 http://deb.debian.org/debian stretch/main amd64 libwayland-egl1-mesa amd64 13.0.6-1+b2 [43.0 kB] Get:236 http://deb.debian.org/debian stretch/main amd64 xkb-data all 2.19-1+deb9u1 [650 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libxkbcommon0 amd64 0.7.1-2~deb9u1 [122 kB] Get:238 http://deb.debian.org/debian stretch/main amd64 libgtk-3-0 amd64 3.22.11-1 [2529 kB] Get:239 http://deb.debian.org/debian stretch/main amd64 libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:243 http://deb.debian.org/debian stretch/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:245 http://deb.debian.org/debian stretch/main amd64 libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:246 http://deb.debian.org/debian stretch/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:248 http://deb.debian.org/debian stretch/main amd64 x11-utils amd64 7.7+3+b1 [202 kB] Get:249 http://deb.debian.org/debian stretch/main amd64 libatk-wrapper-java all 0.33.3-13+deb9u1 [44.1 kB] Get:250 http://deb.debian.org/debian stretch/main amd64 libatk-wrapper-java-jni amd64 0.33.3-13+deb9u1 [37.5 kB] Get:251 http://deb.debian.org/debian stretch/main amd64 libasound2-data all 1.1.3-5 [173 kB] Get:252 http://deb.debian.org/debian stretch/main amd64 libasound2 amd64 1.1.3-5 [497 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 libgif7 amd64 5.1.4-0.4 [43.1 kB] Get:254 http://deb.debian.org/debian stretch/main amd64 libasyncns0 amd64 0.8-6 [12.5 kB] Get:255 http://deb.debian.org/debian stretch/main amd64 libflac8 amd64 1.3.2-1 [221 kB] Get:256 http://deb.debian.org/debian stretch/main amd64 libvorbis0a amd64 1.3.5-4+deb9u2 [91.7 kB] Get:257 http://deb.debian.org/debian stretch/main amd64 libvorbisenc2 amd64 1.3.5-4+deb9u2 [79.4 kB] Get:258 http://deb.debian.org/debian stretch/main amd64 libsndfile1 amd64 1.0.27-3 [248 kB] Get:259 http://deb.debian.org/debian stretch/main amd64 libpulse0 amd64 10.0-1+deb9u1 [283 kB] Get:260 http://deb.debian.org/debian stretch/main amd64 openjdk-8-jre amd64 8u252-b09-1~deb9u1 [69.8 kB] Get:261 http://deb.debian.org/debian stretch/main amd64 default-jre amd64 2:1.8-58+deb9u1 [930 B] Get:262 http://deb.debian.org/debian stretch/main amd64 libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get:263 http://deb.debian.org/debian stretch/main amd64 libcommons-pool-java all 1.6-3 [104 kB] Get:264 http://deb.debian.org/debian stretch/main amd64 libcommons-collections3-java all 3.2.2-1 [599 kB] Get:265 http://deb.debian.org/debian stretch/main amd64 libcommons-dbcp-java all 1.4-5 [155 kB] Get:266 http://deb.debian.org/debian stretch/main amd64 libservlet3.1-java all 8.5.54-0+deb9u1 [403 kB] Get:267 http://deb.debian.org/debian stretch/main amd64 libhsqldb-java all 2.3.4-1 [1502 kB] Get:268 http://deb.debian.org/debian stretch/main amd64 libbiojava1.7-java all 1:1.7.1-5 [3160 kB] Get:269 http://deb.debian.org/debian stretch/main amd64 libbiojava-java all 1:1.7.1-5 [48.4 kB] Get:270 http://deb.debian.org/debian stretch/main amd64 libcommons-cli-java all 1.3.1-3 [55.2 kB] Get:271 http://deb.debian.org/debian stretch/main amd64 alien-hunter all 1.7-5 [28.4 kB] Get:272 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:273 http://deb.debian.org/debian stretch/main amd64 libatlas3-base amd64 3.10.3-1+b1 [3048 kB] Get:274 http://deb.debian.org/debian stretch/main amd64 libgsl2 amd64 2.3+dfsg-1 [893 kB] Get:275 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:276 http://deb.debian.org/debian stretch/main amd64 libtamuanova-0.2 amd64 0.2-4 [7610 B] Get:277 http://deb.debian.org/debian stretch/main amd64 libmath-tamuanova-perl amd64 1.0.2-2+b4 [13.5 kB] Get:278 http://deb.debian.org/debian stretch/main amd64 altree amd64 1.3.1-4+b2 [338 kB] Get:279 http://deb.debian.org/debian stretch/main amd64 amap-align amd64 2.2-6 [129 kB] Get:280 http://deb.debian.org/debian stretch/main amd64 libelf1 amd64 0.168-1 [157 kB] Get:281 http://deb.debian.org/debian stretch/main amd64 libelk0 amd64 3.99.8-4.1+b1 [166 kB] Get:282 http://deb.debian.org/debian stretch/main amd64 libprotobuf10 amd64 3.0.0-9 [681 kB] Get:283 http://deb.debian.org/debian stretch/main amd64 libanfo0 amd64 0.98-5 [272 kB] Get:284 http://deb.debian.org/debian stretch/main amd64 anfo amd64 0.98-5 [116 kB] Get:285 http://deb.debian.org/debian stretch/main amd64 ant all 1.9.9-1+deb9u1 [1923 kB] Get:286 http://deb.debian.org/debian stretch/main amd64 ant-optional all 1.9.9-1+deb9u1 [350 kB] Get:287 http://deb.debian.org/debian stretch/main amd64 libapr1 amd64 1.5.2-5 [96.6 kB] Get:288 http://deb.debian.org/debian stretch/main amd64 libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:289 http://deb.debian.org/debian stretch/main amd64 libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:290 http://deb.debian.org/debian stretch/main amd64 libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:291 http://deb.debian.org/debian stretch/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:292 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:293 http://deb.debian.org/debian stretch/main amd64 apache2-bin amd64 2.4.25-3+deb9u9 [1185 kB] Get:294 http://deb.debian.org/debian stretch/main amd64 aragorn amd64 1.2.38-1 [86.0 kB] Get:295 http://deb.debian.org/debian stretch/main amd64 python-decorator all 4.0.11-1 [13.3 kB] Get:296 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:297 http://deb.debian.org/debian stretch/main amd64 python-numpy amd64 1:1.12.1-3 [1936 kB] Get:298 http://deb.debian.org/debian stretch/main amd64 python-scipy amd64 0.18.1-2 [8933 kB] Get:299 http://deb.debian.org/debian stretch/main amd64 python-htseq amd64 0.6.1p1-4 [188 kB] Get:300 http://deb.debian.org/debian stretch/main amd64 python-six all 1.10.0-3 [14.4 kB] Get:301 http://deb.debian.org/debian stretch/main amd64 python-dateutil all 2.5.3-2 [51.3 kB] Get:302 http://deb.debian.org/debian stretch/main amd64 fonts-lyx all 2.2.2-1 [197 kB] Get:303 http://deb.debian.org/debian stretch/main amd64 python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB] Get:304 http://deb.debian.org/debian stretch/main amd64 python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB] Get:305 http://deb.debian.org/debian stretch/main amd64 python-tz all 2016.7-0.3 [33.7 kB] Get:306 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:307 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB] Get:308 http://deb.debian.org/debian stretch/main amd64 python-cycler all 0.10.0-1 [7448 B] Get:309 http://deb.debian.org/debian stretch/main amd64 python-functools32 all 3.2.3.2-3 [11.0 kB] Get:310 http://deb.debian.org/debian stretch/main amd64 python-subprocess32 amd64 3.2.7-2 [28.9 kB] Get:311 http://deb.debian.org/debian stretch/main amd64 python-matplotlib amd64 2.0.0+dfsg1-2 [1598 kB] Get:312 http://deb.debian.org/debian stretch/main amd64 arden all 1.0-3 [88.7 kB] Get:313 http://deb.debian.org/debian stretch/main amd64 at-spi2-core amd64 2.22.0-6+deb9u1 [69.3 kB] Get:314 http://deb.debian.org/debian stretch/main amd64 autodock amd64 4.2.6-3+b1 [160 kB] Get:315 http://deb.debian.org/debian stretch/main amd64 autogrid amd64 4.2.6-3+b1 [48.3 kB] Get:316 http://deb.debian.org/debian stretch/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:317 http://deb.debian.org/debian stretch/main amd64 libbamtools2.4.0 amd64 2.4.1+dfsg-1 [190 kB] Get:318 http://deb.debian.org/debian stretch/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:319 http://deb.debian.org/debian stretch/main amd64 bamtools amd64 2.4.1+dfsg-1 [214 kB] Get:320 http://deb.debian.org/debian stretch/main amd64 bc amd64 1.06.95-9+b3 [105 kB] Get:321 http://deb.debian.org/debian stretch/main amd64 bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:322 http://deb.debian.org/debian stretch/main amd64 binutils amd64 2.28-5 [3770 kB] Get:323 http://deb.debian.org/debian stretch/main amd64 ant-contrib all 1.0~b3+svn177-9 [255 kB] Get:324 http://deb.debian.org/debian stretch/main amd64 libhamcrest-java all 1.3-6 [378 kB] Get:325 http://deb.debian.org/debian stretch/main amd64 junit4 all 4.12-4 [286 kB] Get:326 http://deb.debian.org/debian stretch/main amd64 libcommons-codec-java all 1.10-1 [234 kB] Get:327 http://deb.debian.org/debian stretch/main amd64 libapache-pom-java all 10-2 [3870 B] Get:328 http://deb.debian.org/debian stretch/main amd64 libcommons-parent-java all 39-3 [9350 B] Get:329 http://deb.debian.org/debian stretch/main amd64 libcommons-logging-java all 1.2-1 [62.1 kB] Get:330 http://deb.debian.org/debian stretch/main amd64 libcommons-httpclient-java all 3.1-12 [298 kB] Get:331 http://deb.debian.org/debian stretch/main amd64 libcommons-net-java all 3.5-1 [281 kB] Get:332 http://deb.debian.org/debian stretch/main amd64 libmail-java all 1.5.6-2 [643 kB] Get:333 http://deb.debian.org/debian stretch/main amd64 libjcommon-java all 1.0.23-1 [466 kB] Get:334 http://deb.debian.org/debian stretch/main amd64 libjaxen-java all 1.1.6-1+deb9u1 [205 kB] Get:335 http://deb.debian.org/debian stretch/main amd64 libjdom1-java all 1.1.3-1 [150 kB] Get:336 http://deb.debian.org/debian stretch/main amd64 libcommons-discovery-java all 0.5-3 [136 kB] Get:337 http://deb.debian.org/debian stretch/main amd64 libwsdl4j-java all 1.6.3-4 [177 kB] Get:338 http://deb.debian.org/debian stretch/main amd64 libaxis-java all 1.4-25 [1503 kB] Get:339 http://deb.debian.org/debian stretch/main amd64 libjava-xmlbuilder-java all 0.4-2 [20.2 kB] Get:340 http://deb.debian.org/debian stretch/main amd64 libjets3t-java all 0.8.1+dfsg-3 [478 kB] Get:341 http://deb.debian.org/debian stretch/main amd64 libjgoodies-common-java all 1.8.1-2 [35.7 kB] Get:342 http://deb.debian.org/debian stretch/main amd64 libjgoodies-forms-java all 1.9.0-3 [133 kB] Get:343 http://deb.debian.org/debian stretch/main amd64 libjzlib-java all 1.1.3-1 [69.9 kB] Get:344 http://deb.debian.org/debian stretch/main amd64 libjsch-java all 0.1.54-1 [284 kB] Get:345 http://deb.debian.org/debian stretch/main amd64 liblog4j1.2-java all 1.2.17-7+deb9u1 [431 kB] Get:346 http://deb.debian.org/debian stretch/main amd64 libmysql-java all 5.1.49-0+deb9u1 [1051 kB] Get:347 http://deb.debian.org/debian stretch/main amd64 liboro-java all 2.0.8a-12 [69.2 kB] Get:348 http://deb.debian.org/debian stretch/main amd64 libregexp-java all 1.5-3 [35.5 kB] Get:349 http://deb.debian.org/debian stretch/main amd64 libisorelax-java all 20041111-9 [62.4 kB] Get:350 http://deb.debian.org/debian stretch/main amd64 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:351 http://deb.debian.org/debian stretch/main amd64 libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB] Get:352 http://deb.debian.org/debian stretch/main amd64 libxml-commons-external-java all 1.4.01-2 [245 kB] Get:353 http://deb.debian.org/debian stretch/main amd64 libxerces2-java all 2.11.0-7 [1365 kB] Get:354 http://deb.debian.org/debian stretch/main amd64 libmsv-java all 2009.1+dfsg1-5 [771 kB] Get:355 http://deb.debian.org/debian stretch/main amd64 libxpp2-java all 2.1.10-7 [147 kB] Get:356 http://deb.debian.org/debian stretch/main amd64 libxpp3-java all 1.1.4c-2 [349 kB] Get:357 http://deb.debian.org/debian stretch/main amd64 libdom4j-java all 1.6.1+dfsg.3-2+deb9u1 [348 kB] Get:358 http://deb.debian.org/debian stretch/main amd64 libxom-java all 1.2.10-1 [170 kB] Get:359 http://deb.debian.org/debian stretch/main amd64 libsaxonhe-java all 9.5.1.1+dfsg-2 [2908 kB] Get:360 http://deb.debian.org/debian stretch/main amd64 mysql-common all 5.8+1.0.2 [5608 B] Get:361 http://deb.debian.org/debian stretch/main amd64 mariadb-common all 10.1.45-0+deb9u1 [28.6 kB] Get:362 http://deb.debian.org/debian stretch/main amd64 libaio1 amd64 0.3.110-3 [9412 B] Get:363 http://deb.debian.org/debian stretch/main amd64 libreadline5 amd64 5.2+dfsg-3+b1 [119 kB] Get:364 http://deb.debian.org/debian stretch/main amd64 mariadb-client-core-10.1 amd64 10.1.45-0+deb9u1 [5127 kB] Get:365 http://deb.debian.org/debian stretch/main amd64 libscalar-list-utils-perl amd64 1:1.47-1 [54.4 kB] Get:366 http://deb.debian.org/debian stretch/main amd64 libconfig-inifiles-perl all 2.94-1 [53.4 kB] Get:367 http://deb.debian.org/debian stretch/main amd64 libjemalloc1 amd64 3.6.0-9.1 [89.8 kB] Get:368 http://deb.debian.org/debian stretch/main amd64 mariadb-client-10.1 amd64 10.1.45-0+deb9u1 [5923 kB] Get:369 http://deb.debian.org/debian stretch/main amd64 default-mysql-client all 1.0.2 [3050 B] Get:370 http://deb.debian.org/debian stretch/main amd64 biomaj all 1.2.3-11 [4279 kB] Get:371 http://deb.debian.org/debian stretch/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:372 http://deb.debian.org/debian stretch/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:373 http://deb.debian.org/debian stretch/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:374 http://deb.debian.org/debian stretch/main amd64 bioperl all 1.7.1-2 [422 kB] Get:375 http://deb.debian.org/debian stretch/main amd64 libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:376 http://deb.debian.org/debian stretch/main amd64 bioperl-run all 1.7.1-3 [44.2 kB] Get:377 http://deb.debian.org/debian stretch/main amd64 biosquid amd64 1.9g+cvs20050121-7 [188 kB] Get:378 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:379 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:380 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:381 http://deb.debian.org/debian stretch/main amd64 blast2 all 1:2.6.0-1 [9084 B] Get:382 http://deb.debian.org/debian stretch/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:383 http://deb.debian.org/debian stretch/main amd64 blends-common all 0.6.96 [23.3 kB] Get:384 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:385 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:386 http://deb.debian.org/debian stretch/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-3 [585 kB] Get:387 http://deb.debian.org/debian stretch/main amd64 blt amd64 2.5.3+dfsg-3 [14.6 kB] Get:388 http://deb.debian.org/debian stretch/main amd64 boxshade amd64 3.3.1-10 [54.4 kB] Get:389 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:390 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:391 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:392 http://deb.debian.org/debian stretch/main amd64 libisl15 amd64 0.18-1 [564 kB] Get:393 http://deb.debian.org/debian stretch/main amd64 libmpc3 amd64 1.0.3-1+b2 [39.9 kB] Get:394 http://deb.debian.org/debian stretch/main amd64 cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:395 http://deb.debian.org/debian stretch/main amd64 cpp amd64 4:6.3.0-4 [18.7 kB] Get:396 http://deb.debian.org/debian stretch/main amd64 libcc1-0 amd64 6.3.0-18+deb9u1 [30.6 kB] Get:397 http://deb.debian.org/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:398 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:399 http://deb.debian.org/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:400 http://deb.debian.org/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:401 http://deb.debian.org/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:402 http://deb.debian.org/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:403 http://deb.debian.org/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:404 http://deb.debian.org/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:405 http://deb.debian.org/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:406 http://deb.debian.org/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:407 http://deb.debian.org/debian stretch/main amd64 gcc amd64 4:6.3.0-4 [5196 B] Get:408 http://deb.debian.org/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:409 http://deb.debian.org/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:410 http://deb.debian.org/debian stretch/main amd64 g++ amd64 4:6.3.0-4 [1546 B] Get:411 http://deb.debian.org/debian stretch/main amd64 libdpkg-perl all 1.18.25 [1287 kB] Get:412 http://deb.debian.org/debian stretch/main amd64 patch amd64 2.7.5-1+deb9u2 [112 kB] Get:413 http://deb.debian.org/debian stretch/main amd64 dpkg-dev all 1.18.25 [1595 kB] Get:414 http://deb.debian.org/debian stretch/main amd64 build-essential amd64 12.3 [7346 B] Get:415 http://deb.debian.org/debian stretch/main amd64 bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:416 http://deb.debian.org/debian stretch/main amd64 bzip2-doc all 1.0.6-8.1 [307 kB] Get:417 http://deb.debian.org/debian stretch/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-4 [125 kB] Get:418 http://deb.debian.org/debian stretch/main amd64 libgflags2v5 amd64 2.1.2-4 [69.1 kB] Get:419 http://deb.debian.org/debian stretch/main amd64 libunwind8 amd64 1.1-4.1 [48.7 kB] Get:420 http://deb.debian.org/debian stretch/main amd64 libgoogle-glog0v5 amd64 0.3.4-2 [51.5 kB] Get:421 http://deb.debian.org/debian stretch/main amd64 libcassie1v5 amd64 1.0.5-1+b1 [38.2 kB] Get:422 http://deb.debian.org/debian stretch/main amd64 cassiopee amd64 1.0.5-1+b1 [13.7 kB] Get:423 http://deb.debian.org/debian stretch/main amd64 cd-hit amd64 4.6.6-2 [852 kB] Get:424 http://deb.debian.org/debian stretch/main amd64 cdbfasta amd64 0.99-20100722-3 [55.5 kB] Get:425 http://deb.debian.org/debian stretch/main amd64 cdbs all 0.4.150 [82.6 kB] Get:426 http://deb.debian.org/debian stretch/main amd64 fonts-circos-symbols all 0.69.4+dfsg-1 [45.8 kB] Get:427 http://deb.debian.org/debian stretch/main amd64 fonts-cmu all 0.7.0-3 [4874 kB] Get:428 http://deb.debian.org/debian stretch/main amd64 libregexp-common-perl all 2016060801-1 [178 kB] Get:429 http://deb.debian.org/debian stretch/main amd64 libcarp-always-perl all 0.12-1 [9142 B] Get:430 http://deb.debian.org/debian stretch/main amd64 libconfig-general-perl all 2.63-1 [70.5 kB] Get:431 http://deb.debian.org/debian stretch/main amd64 libdata-dumper-simple-perl all 0.11-5 [12.9 kB] Get:432 http://deb.debian.org/debian stretch/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:433 http://deb.debian.org/debian stretch/main amd64 libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:434 http://deb.debian.org/debian stretch/main amd64 libgd-perl amd64 2.53-3 [177 kB] Get:435 http://deb.debian.org/debian stretch/main amd64 libgetopt-simple-perl all 1.52-5 [14.4 kB] Get:436 http://deb.debian.org/debian stretch/main amd64 libmath-bezier-perl all 0.01-2 [6910 B] Get:437 http://deb.debian.org/debian stretch/main amd64 libmath-round-perl all 0.07-1 [10.6 kB] Get:438 http://deb.debian.org/debian stretch/main amd64 libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:439 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:440 http://deb.debian.org/debian stretch/main amd64 libtry-tiny-perl all 0.28-1 [22.7 kB] Get:441 http://deb.debian.org/debian stretch/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:442 http://deb.debian.org/debian stretch/main amd64 libparams-validate-perl amd64 1.26-1 [66.0 kB] Get:443 http://deb.debian.org/debian stretch/main amd64 libreadonly-perl all 2.050-1 [22.7 kB] Get:444 http://deb.debian.org/debian stretch/main amd64 libset-intspan-perl all 1.19-1 [26.7 kB] Get:445 http://deb.debian.org/debian stretch/main amd64 liblist-someutils-perl all 0.53-1 [42.0 kB] Get:446 http://deb.debian.org/debian stretch/main amd64 liblist-utilsby-perl all 0.10-1 [14.3 kB] Get:447 http://deb.debian.org/debian stretch/main amd64 liblist-allutils-perl all 0.12-1 [31.9 kB] Get:448 http://deb.debian.org/debian stretch/main amd64 libipc-system-simple-perl all 1.25-3 [26.9 kB] Get:449 http://deb.debian.org/debian stretch/main amd64 libfile-basedir-perl all 0.07-1 [17.5 kB] Get:450 http://deb.debian.org/debian stretch/main amd64 libmath-vec-perl all 1.01-3 [17.8 kB] Get:451 http://deb.debian.org/debian stretch/main amd64 libspiffy-perl all 0.41-1 [26.1 kB] Get:452 http://deb.debian.org/debian stretch/main amd64 libio-all-perl all 0.86-2 [73.4 kB] Get:453 http://deb.debian.org/debian stretch/main amd64 libmath-vecstat-perl all 0.08-1 [9148 B] Get:454 http://deb.debian.org/debian stretch/main amd64 libgraphics-colornames-perl all 2.11-7.1 [37.9 kB] Get:455 http://deb.debian.org/debian stretch/main amd64 libgraphics-colorobject-perl all 0.5.0-7.1 [28.2 kB] Get:456 http://deb.debian.org/debian stretch/main amd64 libtext-format-perl all 0.60-1 [20.0 kB] Get:457 http://deb.debian.org/debian stretch/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:458 http://deb.debian.org/debian stretch/main amd64 libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:459 http://deb.debian.org/debian stretch/main amd64 libnumber-format-perl all 1.75-1 [30.0 kB] Get:460 http://deb.debian.org/debian stretch/main amd64 libstatistics-basic-perl all 1.6611-1 [70.4 kB] Get:461 http://deb.debian.org/debian stretch/main amd64 circos all 0.69.4+dfsg-1 [19.8 MB] Get:462 http://deb.debian.org/debian stretch/main amd64 circos-tools all 0.22-1 [18.7 MB] Get:463 http://deb.debian.org/debian stretch/main amd64 clearcut amd64 1.0.9-1+b1 [283 kB] Get:464 http://deb.debian.org/debian stretch/main amd64 qtcore4-l10n all 4:4.8.7+dfsg-11 [662 kB] Get:465 http://deb.debian.org/debian stretch/main amd64 libqtcore4 amd64 4:4.8.7+dfsg-11 [1598 kB] Get:466 http://deb.debian.org/debian stretch/main amd64 libmng1 amd64 1.0.10+dfsg-3.1+b5 [211 kB] Get:467 http://deb.debian.org/debian stretch/main amd64 libqtgui4 amd64 4:4.8.7+dfsg-11 [4150 kB] Get:468 http://deb.debian.org/debian stretch/main amd64 clonalframe amd64 1.2-5 [49.2 kB] Get:469 http://deb.debian.org/debian stretch/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:470 http://deb.debian.org/debian stretch/main amd64 clustalo amd64 1.2.4-1 [263 kB] Get:471 http://deb.debian.org/debian stretch/main amd64 clustalw amd64 2.1+lgpl-5 [286 kB] Get:472 http://deb.debian.org/debian stretch/main amd64 cython amd64 0.25.2-1 [1863 kB] Get:473 http://deb.debian.org/debian stretch/main amd64 dialign amd64 2.2.1-8 [138 kB] Get:474 http://deb.debian.org/debian stretch/main amd64 dialign-tx-data all 1.0.2-9 [869 kB] Get:475 http://deb.debian.org/debian stretch/main amd64 dialign-tx amd64 1.0.2-9 [85.7 kB] Get:476 http://deb.debian.org/debian stretch/main amd64 dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:477 http://deb.debian.org/debian stretch/main amd64 discosnp amd64 1.2.6-1+b2 [143 kB] Get:478 http://deb.debian.org/debian stretch/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4 [159 kB] Get:479 http://deb.debian.org/debian stretch/main amd64 dnaclust amd64 3-4+b2 [85.9 kB] Get:480 http://deb.debian.org/debian stretch/main amd64 dssp amd64 2.2.1-3+b2 [265 kB] Get:481 http://deb.debian.org/debian stretch/main amd64 libkpathsea6 amd64 2016.20160513.41080.dfsg-2+deb9u1 [160 kB] Get:482 http://deb.debian.org/debian stretch/main amd64 libptexenc1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [58.0 kB] Get:483 http://deb.debian.org/debian stretch/main amd64 libsynctex1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [64.9 kB] Get:484 http://deb.debian.org/debian stretch/main amd64 libtexlua52 amd64 2016.20160513.41080.dfsg-2+deb9u1 [111 kB] Get:485 http://deb.debian.org/debian stretch/main amd64 libtexluajit2 amd64 2016.20160513.41080.dfsg-2+deb9u1 [250 kB] Get:486 http://deb.debian.org/debian stretch/main amd64 t1utils amd64 1.39-2 [59.0 kB] Get:487 http://deb.debian.org/debian stretch/main amd64 libcupsimage2 amd64 2.2.1-8+deb9u6 [122 kB] Get:488 http://deb.debian.org/debian stretch/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:489 http://deb.debian.org/debian stretch/main amd64 libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:490 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:491 http://deb.debian.org/debian stretch/main amd64 libgs9-common all 9.26a~dfsg-0+deb9u6 [5143 kB] Get:492 http://deb.debian.org/debian stretch/main amd64 libgs9 amd64 9.26a~dfsg-0+deb9u6 [2213 kB] Get:493 http://deb.debian.org/debian stretch/main amd64 libharfbuzz-icu0 amd64 1.4.2-1 [466 kB] Get:494 http://deb.debian.org/debian stretch/main amd64 libpoppler64 amd64 0.48.0-2+deb9u2 [1287 kB] Get:495 http://deb.debian.org/debian stretch/main amd64 libpotrace0 amd64 1.13-3 [24.9 kB] Get:496 http://deb.debian.org/debian stretch/main amd64 libzzip-0-13 amd64 0.13.62-3.2~deb9u1 [56.1 kB] Get:497 http://deb.debian.org/debian stretch/main amd64 tex-common all 6.06 [566 kB] Get:498 http://deb.debian.org/debian stretch/main amd64 texlive-binaries amd64 2016.20160513.41080.dfsg-2+deb9u1 [7404 kB] Get:499 http://deb.debian.org/debian stretch/main amd64 ghostscript amd64 9.26a~dfsg-0+deb9u6 [99.2 kB] Get:500 http://deb.debian.org/debian stretch/main amd64 dvipng amd64 1.14-2+b3 [86.5 kB] Get:501 http://deb.debian.org/debian stretch/main amd64 libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:502 http://deb.debian.org/debian stretch/main amd64 libmariadbclient18 amd64 10.1.45-0+deb9u1 [785 kB] Get:503 http://deb.debian.org/debian stretch/main amd64 libpq5 amd64 9.6.17-0+deb9u1 [137 kB] Get:504 http://deb.debian.org/debian stretch/main amd64 emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:505 http://deb.debian.org/debian stretch/main amd64 embassy-domainatrix amd64 0.1.660-1 [61.7 kB] Get:506 http://deb.debian.org/debian stretch/main amd64 embassy-domalign amd64 0.1.660-1 [66.7 kB] Get:507 http://deb.debian.org/debian stretch/main amd64 embassy-domsearch amd64 1:0.1.660-1 [60.6 kB] Get:508 http://deb.debian.org/debian stretch/main amd64 emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:509 http://deb.debian.org/debian stretch/main amd64 emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:510 http://deb.debian.org/debian stretch/main amd64 exim4-config all 4.89-2+deb9u7 [377 kB] Get:511 http://deb.debian.org/debian stretch/main amd64 exim4-base amd64 4.89-2+deb9u7 [1094 kB] Get:512 http://deb.debian.org/debian stretch/main amd64 exim4-daemon-light amd64 4.89-2+deb9u7 [542 kB] Get:513 http://deb.debian.org/debian stretch/main amd64 exim4 all 4.89-2+deb9u7 [7860 B] Get:514 http://deb.debian.org/debian stretch/main amd64 exonerate amd64 2.4.0-2 [1476 kB] Get:515 http://deb.debian.org/debian stretch/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:516 http://deb.debian.org/debian stretch/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] Get:517 http://deb.debian.org/debian stretch/main amd64 fastdnaml amd64 1.2.2-11+b1 [60.5 kB] Get:518 http://deb.debian.org/debian stretch/main amd64 fastlink amd64 4.1P-fix100+dfsg-1+b1 [250 kB] Get:519 http://deb.debian.org/debian stretch/main amd64 libcommons-math3-java all 3.6.1-2 [1941 kB] Get:520 http://deb.debian.org/debian stretch/main amd64 libjbzip2-java all 0.9.1-3 [39.9 kB] Get:521 http://deb.debian.org/debian stretch/main amd64 libcommons-compress-java all 1.13-1 [430 kB] Get:522 http://deb.debian.org/debian stretch/main amd64 libcommons-jexl2-java all 2.1.1-3 [246 kB] Get:523 http://deb.debian.org/debian stretch/main amd64 libngs-sdk1 amd64 1.3.0-2 [51.2 kB] Get:524 http://deb.debian.org/debian stretch/main amd64 libngs-sdk-dev amd64 1.3.0-2 [92.4 kB] Get:525 http://deb.debian.org/debian stretch/main amd64 libngs-java amd64 1.3.0-2 [71.1 kB] Get:526 http://deb.debian.org/debian stretch/main amd64 libsnappy1v5 amd64 1.1.3-3 [51.0 kB] Get:527 http://deb.debian.org/debian stretch/main amd64 libsnappy-jni amd64 1.1.2.6-1 [6808 B] Get:528 http://deb.debian.org/debian stretch/main amd64 libsnappy-java all 1.1.2.6-1 [65.9 kB] Get:529 http://deb.debian.org/debian stretch/main amd64 libxz-java all 1.6-1 [128 kB] Get:530 http://deb.debian.org/debian stretch/main amd64 libhtsjdk-java all 2.8.1+dfsg-1 [1438 kB] Get:531 http://deb.debian.org/debian stretch/main amd64 fastqc all 0.11.5+dfsg-6 [375 kB] Get:532 http://deb.debian.org/debian stretch/main amd64 libgtextutils0v5 amd64 0.7-4 [19.0 kB] Get:533 http://deb.debian.org/debian stretch/main amd64 libgd-text-perl all 0.86-9 [41.4 kB] Get:534 http://deb.debian.org/debian stretch/main amd64 libgd-graph-perl all 1.48-2 [389 kB] Get:535 http://deb.debian.org/debian stretch/main amd64 libperlio-gzip-perl amd64 0.19-1+b2 [17.3 kB] Get:536 http://deb.debian.org/debian stretch/main amd64 fastx-toolkit amd64 0.0.14-3 [90.2 kB] Get:537 http://deb.debian.org/debian stretch/main amd64 filo amd64 1.1.0-3+b1 [46.3 kB] Get:538 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:539 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:540 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:541 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:542 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:543 http://deb.debian.org/debian stretch/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:544 http://deb.debian.org/debian stretch/main amd64 libhts1 amd64 1.3.2-2 [257 kB] Get:545 http://deb.debian.org/debian stretch/main amd64 python-pysam amd64 0.10.0+ds-2 [1301 kB] Get:546 http://deb.debian.org/debian stretch/main amd64 fitgcp amd64 0.0.20150429-1 [12.3 kB] Get:547 http://deb.debian.org/debian stretch/main amd64 libtbb2 amd64 4.3~20150611-2 [136 kB] Get:548 http://deb.debian.org/debian stretch/main amd64 flexbar amd64 2.50-2+b1 [257 kB] Get:549 http://deb.debian.org/debian stretch/main amd64 fonts-cabin all 1.5-2 [139 kB] Get:550 http://deb.debian.org/debian stretch/main amd64 fonts-comfortaa all 2.003-1 [133 kB] Get:551 http://deb.debian.org/debian stretch/main amd64 fonts-croscore all 20161116-1 [2138 kB] Get:552 http://deb.debian.org/debian stretch/main amd64 fonts-crosextra-caladea all 20130214-1 [82.1 kB] Get:553 http://deb.debian.org/debian stretch/main amd64 fonts-crosextra-carlito all 20130920-1 [745 kB] Get:554 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-extra all 2.37-1 [1982 kB] Get:555 http://deb.debian.org/debian stretch/main amd64 fonts-ebgaramond all 0.016-1 [475 kB] Get:556 http://deb.debian.org/debian stretch/main amd64 fonts-ebgaramond-extra all 0.016-1 [2157 kB] Get:557 http://deb.debian.org/debian stretch/main amd64 fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:558 http://deb.debian.org/debian stretch/main amd64 fonts-freefont-otf all 20120503-6 [3168 kB] Get:559 http://deb.debian.org/debian stretch/main amd64 fonts-freefont-ttf all 20120503-6 [4316 kB] Get:560 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-artemisia all 1.1-5 [259 kB] Get:561 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:562 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-didot all 1.1-6 [278 kB] Get:563 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:564 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-olga all 1.1-5 [33.2 kB] Get:565 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-solomos all 1.1-5 [40.6 kB] Get:566 http://deb.debian.org/debian stretch/main amd64 fonts-junicode all 0.7.8-2 [643 kB] Get:567 http://deb.debian.org/debian stretch/main amd64 fonts-linuxlibertine all 5.3.0-2 [1713 kB] Get:568 http://deb.debian.org/debian stretch/main amd64 fonts-lmodern all 2.004.5-3 [4540 kB] Get:569 http://deb.debian.org/debian stretch/main amd64 fonts-lobster all 2.0-2 [39.5 kB] Get:570 http://deb.debian.org/debian stretch/main amd64 fonts-lobstertwo all 2.0-2 [94.0 kB] Get:571 http://deb.debian.org/debian stretch/main amd64 fonts-noto-hinted all 20161116-1 [5075 kB] Get:572 http://deb.debian.org/debian stretch/main amd64 fonts-noto-mono all 20161116-1 [79.2 kB] Get:573 http://deb.debian.org/debian stretch/main amd64 fonts-oflb-asana-math all 000.907-6 [245 kB] Get:574 http://deb.debian.org/debian stretch/main amd64 fonts-roboto-hinted all 2:0~20160106-2 [2922 kB] Get:575 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentium all 20081126:1.03-1 [251 kB] Get:576 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentium-basic all 1.1-7 [382 kB] Get:577 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentiumplus all 5.000-1 [2811 kB] Get:578 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentiumplus-compact all 5.000-2 [1522 kB] Get:579 http://deb.debian.org/debian stretch/main amd64 fonts-texgyre all 20160520-1 [8761 kB] Get:580 http://deb.debian.org/debian stretch/main amd64 mummer amd64 3.23+dfsg-2 [809 kB] Get:581 http://deb.debian.org/debian stretch/main amd64 fsa amd64 1.15.9+dfsg-3 [753 kB] Get:582 http://deb.debian.org/debian stretch/main amd64 python-reportlab-accel amd64 3.3.0-2+deb9u1 [36.8 kB] Get:583 http://deb.debian.org/debian stretch/main amd64 python-reportlab all 3.3.0-2+deb9u1 [478 kB] Get:584 http://deb.debian.org/debian stretch/main amd64 python-biopython amd64 1.68+dfsg-3 [1201 kB] Get:585 http://deb.debian.org/debian stretch/main amd64 bowtie amd64 1.1.2-6 [1618 kB] Get:586 http://deb.debian.org/debian stretch/main amd64 bowtie2 amd64 2.3.0-2 [1166 kB] Get:587 http://deb.debian.org/debian stretch/main amd64 seqan-apps amd64 2.3.1+dfsg-4 [11.5 MB] Get:588 http://deb.debian.org/debian stretch/main amd64 gasic amd64 0.0.r19-1 [19.9 kB] Get:589 http://deb.debian.org/debian stretch/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:590 http://deb.debian.org/debian stretch/main amd64 libtre5 amd64 0.8.0-6 [58.5 kB] Get:591 http://deb.debian.org/debian stretch/main amd64 lua-filesystem amd64 1.6.3-1 [10.3 kB] Get:592 http://deb.debian.org/debian stretch/main amd64 lua-lpeg amd64 1.0.0-1 [30.4 kB] Get:593 http://deb.debian.org/debian stretch/main amd64 libpth20 amd64 2.0.7-20+b2 [78.5 kB] Get:594 http://deb.debian.org/debian stretch/main amd64 genometools-common all 1.5.9+ds-4 [171 kB] Get:595 http://deb.debian.org/debian stretch/main amd64 genometools amd64 1.5.9+ds-4 [1903 kB] Get:596 http://deb.debian.org/debian stretch/main amd64 gff2aplot amd64 2.0-8+b1 [311 kB] Get:597 http://deb.debian.org/debian stretch/main amd64 gff2ps all 0.98d-5 [44.6 kB] Get:598 http://deb.debian.org/debian stretch/main amd64 libgfortran-6-dev amd64 6.3.0-18+deb9u1 [299 kB] Get:599 http://deb.debian.org/debian stretch/main amd64 gfortran-6 amd64 6.3.0-18+deb9u1 [6916 kB] Get:600 http://deb.debian.org/debian stretch/main amd64 gfortran amd64 4:6.3.0-4 [1356 B] Get:601 http://deb.debian.org/debian stretch/main amd64 libsuitesparseconfig4 amd64 1:4.5.4-1 [18.8 kB] Get:602 http://deb.debian.org/debian stretch/main amd64 libamd2 amd64 1:4.5.4-1 [36.3 kB] Get:603 http://deb.debian.org/debian stretch/main amd64 libcolamd2 amd64 1:4.5.4-1 [28.5 kB] Get:604 http://deb.debian.org/debian stretch/main amd64 libglpk40 amd64 4.61-1 [396 kB] Get:605 http://deb.debian.org/debian stretch/main amd64 libglpk-java amd64 1.7.0-1 [776 kB] Get:606 http://deb.debian.org/debian stretch/main amd64 glpk-utils amd64 4.61-1 [151 kB] Get:607 http://deb.debian.org/debian stretch/main amd64 tophat amd64 2.1.1+dfsg-2+b2 [755 kB] Get:608 http://deb.debian.org/debian stretch/main amd64 giira amd64 0.0.20140625-1 [144 kB] Get:609 http://deb.debian.org/debian stretch/main amd64 glam2 amd64 1064-3+b1 [240 kB] Get:610 http://deb.debian.org/debian stretch/main amd64 libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:611 http://deb.debian.org/debian stretch/main amd64 libcdt5 amd64 2.38.0-17 [59.6 kB] Get:612 http://deb.debian.org/debian stretch/main amd64 libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:613 http://deb.debian.org/debian stretch/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:614 http://deb.debian.org/debian stretch/main amd64 libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:615 http://deb.debian.org/debian stretch/main amd64 libxdot4 amd64 2.38.0-17 [55.6 kB] Get:616 http://deb.debian.org/debian stretch/main amd64 libgvc6 amd64 2.38.0-17 [639 kB] Get:617 http://deb.debian.org/debian stretch/main amd64 libgvpr2 amd64 2.38.0-17 [211 kB] Get:618 http://deb.debian.org/debian stretch/main amd64 graphviz amd64 2.38.0-17 [802 kB] Get:619 http://deb.debian.org/debian stretch/main amd64 libgetopt-euclid-perl all 0.4.5-2 [47.4 kB] Get:620 http://deb.debian.org/debian stretch/main amd64 libmath-random-mt-perl amd64 1.17-1+b2 [15.2 kB] Get:621 http://deb.debian.org/debian stretch/main amd64 grinder all 0.5.4-1 [79.5 kB] Get:622 http://deb.debian.org/debian stretch/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:623 http://deb.debian.org/debian stretch/main amd64 guile-2.0-libs amd64 2.0.13+1-4 [2232 kB] Get:624 http://deb.debian.org/debian stretch/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:625 http://deb.debian.org/debian stretch/main amd64 hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:626 http://deb.debian.org/debian stretch/main amd64 hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:627 http://deb.debian.org/debian stretch/main amd64 hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:628 http://deb.debian.org/debian stretch/main amd64 icu-devtools amd64 57.1-6+deb9u4 [178 kB] Get:629 http://deb.debian.org/debian stretch/main amd64 idba amd64 1.1.3-1 [231 kB] Get:630 http://deb.debian.org/debian stretch/main amd64 imagemagick-6.q16 amd64 8:6.9.7.4+dfsg-11+deb9u8 [563 kB] Get:631 http://deb.debian.org/debian stretch/main amd64 imagemagick amd64 8:6.9.7.4+dfsg-11+deb9u8 [141 kB] Get:632 http://deb.debian.org/debian stretch/main amd64 infernal amd64 1.1.2-1 [22.0 MB] Get:633 http://deb.debian.org/debian stretch/main amd64 python-ptyprocess all 0.5.1-1 [12.5 kB] Get:634 http://deb.debian.org/debian stretch/main amd64 python-pexpect all 4.2.1-1 [47.9 kB] Get:635 http://deb.debian.org/debian stretch/main amd64 python-pathlib2 all 2.2.0+really2.1.0-1 [16.5 kB] Get:636 http://deb.debian.org/debian stretch/main amd64 python-pickleshare all 0.7.4-1 [6736 B] Get:637 http://deb.debian.org/debian stretch/main amd64 python-pkg-resources all 33.1.1-1 [166 kB] Get:638 http://deb.debian.org/debian stretch/main amd64 python-wcwidth all 0.1.7+dfsg1-1 [14.6 kB] Get:639 http://deb.debian.org/debian stretch/main amd64 python-prompt-toolkit all 1.0.9-1 [174 kB] Get:640 http://deb.debian.org/debian stretch/main amd64 python-pygments all 2.2.0+dfsg-1 [590 kB] Get:641 http://deb.debian.org/debian stretch/main amd64 python-simplegeneric all 0.8.1-1 [11.9 kB] Get:642 http://deb.debian.org/debian stretch/main amd64 python-ipython-genutils all 0.1.0-2 [20.7 kB] Get:643 http://deb.debian.org/debian stretch/main amd64 python-enum34 all 1.1.6-1 [35.0 kB] Get:644 http://deb.debian.org/debian stretch/main amd64 python-traitlets all 4.3.1-1 [60.6 kB] Get:645 http://deb.debian.org/debian stretch/main amd64 python-backports-shutil-get-terminal-size all 1.0.0-3 [4656 B] Get:646 http://deb.debian.org/debian stretch/main amd64 python-ipython all 5.1.0-3 [375 kB] Get:647 http://deb.debian.org/debian stretch/main amd64 ipython all 5.1.0-3 [5496 B] Get:648 http://deb.debian.org/debian stretch/main amd64 isympy-common all 1.0-3 [189 kB] Get:649 http://deb.debian.org/debian stretch/main amd64 python-mpmath all 0.19-3 [402 kB] Get:650 http://deb.debian.org/debian stretch/main amd64 python-sympy all 1.0-3 [2367 kB] Get:651 http://deb.debian.org/debian stretch/main amd64 isympy all 1.0-3 [6828 B] Get:652 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:653 http://deb.debian.org/debian stretch/main amd64 java-wrappers all 0.1.28 [10.7 kB] Get:654 http://deb.debian.org/debian stretch/main amd64 javascript-common all 11 [6120 B] Get:655 http://deb.debian.org/debian stretch/main amd64 libjellyfish-2.0-2 amd64 2.2.6-1+b1 [62.2 kB] Get:656 http://deb.debian.org/debian stretch/main amd64 jellyfish amd64 2.2.6-1+b1 [349 kB] Get:657 http://deb.debian.org/debian stretch/main amd64 kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:658 http://deb.debian.org/debian stretch/main amd64 kissplice amd64 2.4.0-p1-1 [781 kB] Get:659 http://deb.debian.org/debian stretch/main amd64 laptop-detect amd64 0.13.8 [6162 B] Get:660 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:661 http://deb.debian.org/debian stretch/main amd64 sysstat amd64 11.4.3-2 [360 kB] Get:662 http://deb.debian.org/debian stretch/main amd64 parallel all 20161222-1 [307 kB] Get:663 http://deb.debian.org/debian stretch/main amd64 last-align amd64 830-1 [725 kB] Get:664 http://deb.debian.org/debian stretch/main amd64 liberror-perl all 0.17024-1 [26.9 kB] Get:665 http://deb.debian.org/debian stretch/main amd64 libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:666 http://deb.debian.org/debian stretch/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:667 http://deb.debian.org/debian stretch/main amd64 libace-perl amd64 1.92-4+b1 [286 kB] Get:668 http://deb.debian.org/debian stretch/main amd64 libaec0 amd64 0.3.2-1 [18.5 kB] Get:669 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:670 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:671 http://deb.debian.org/debian stretch/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:672 http://deb.debian.org/debian stretch/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:673 http://deb.debian.org/debian stretch/main amd64 libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:674 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:675 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:676 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:677 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:678 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:679 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:680 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:681 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:682 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:683 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:684 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:685 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:686 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:687 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:688 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:689 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:690 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:691 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:692 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:693 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:694 http://deb.debian.org/debian stretch/main amd64 libapache2-mod-perl2 amd64 2.0.10-2+deb9u1 [886 kB] Get:695 http://deb.debian.org/debian stretch/main amd64 libdbi-perl amd64 1.636-1+b1 [766 kB] Get:696 http://deb.debian.org/debian stretch/main amd64 libapache-dbi-perl all 1.12-1 [54.6 kB] Get:697 http://deb.debian.org/debian stretch/main amd64 libapache2-reload-perl all 0.13-1 [17.4 kB] Get:698 http://deb.debian.org/debian stretch/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:699 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:700 http://deb.debian.org/debian stretch/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:701 http://deb.debian.org/debian stretch/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:702 http://deb.debian.org/debian stretch/main amd64 librole-tiny-perl all 2.000005-1 [19.0 kB] Get:703 http://deb.debian.org/debian stretch/main amd64 libstrictures-perl all 2.000003-1 [18.1 kB] Get:704 http://deb.debian.org/debian stretch/main amd64 libmoo-perl all 2.002005-1 [67.0 kB] Get:705 http://deb.debian.org/debian stretch/main amd64 libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:706 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-perl all 1.000005-1 [271 kB] Get:707 http://deb.debian.org/debian stretch/main amd64 libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:708 http://deb.debian.org/debian stretch/main amd64 libatinject-jsr330-api-java all 1.0+ds1-2 [22.7 kB] Get:709 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:710 http://deb.debian.org/debian stretch/main amd64 libbambamc0 amd64 0.0.50-1 [35.4 kB] Get:711 http://deb.debian.org/debian stretch/main amd64 libbcprov-java all 1.56-1+deb9u2 [3637 kB] Get:712 http://deb.debian.org/debian stretch/main amd64 libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:713 http://deb.debian.org/debian stretch/main amd64 libcarp-clan-perl all 6.06-1 [12.9 kB] Get:714 http://deb.debian.org/debian stretch/main amd64 libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:715 http://deb.debian.org/debian stretch/main amd64 libblas-dev amd64 3.7.0-2 [162 kB] Get:716 http://deb.debian.org/debian stretch/main amd64 libboost-mpi1.62.0 amd64 1.62.0+dfsg-4 [70.6 kB] Get:717 http://deb.debian.org/debian stretch/main amd64 libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:718 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:719 http://deb.debian.org/debian stretch/main amd64 libcgi-pm-perl all 4.35-1 [222 kB] Get:720 http://deb.debian.org/debian stretch/main amd64 libfcgi-perl amd64 0.78-2 [38.2 kB] Get:721 http://deb.debian.org/debian stretch/main amd64 libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:722 http://deb.debian.org/debian stretch/main amd64 libclass-inspector-perl all 1.31-1 [18.7 kB] Get:723 http://deb.debian.org/debian stretch/main amd64 libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:724 http://deb.debian.org/debian stretch/main amd64 libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:725 http://deb.debian.org/debian stretch/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:726 http://deb.debian.org/debian stretch/main amd64 libcrypt-rc4-perl all 2.02-2 [8150 B] Get:727 http://deb.debian.org/debian stretch/main amd64 libcupsfilters1 amd64 1.11.6-3+deb9u1 [129 kB] Get:728 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:729 http://deb.debian.org/debian stretch/main amd64 libdate-calc-perl all 6.4-1 [194 kB] Get:730 http://deb.debian.org/debian stretch/main amd64 libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:731 http://deb.debian.org/debian stretch/main amd64 libdate-manip-perl all 6.57-1 [911 kB] Get:732 http://deb.debian.org/debian stretch/main amd64 libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:733 http://deb.debian.org/debian stretch/main amd64 libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:734 http://deb.debian.org/debian stretch/main amd64 libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:735 http://deb.debian.org/debian stretch/main amd64 libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:736 http://deb.debian.org/debian stretch/main amd64 libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:737 http://deb.debian.org/debian stretch/main amd64 libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:738 http://deb.debian.org/debian stretch/main amd64 libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:739 http://deb.debian.org/debian stretch/main amd64 libdjvulibre-text all 3.5.27.1-7 [60.7 kB] Get:740 http://deb.debian.org/debian stretch/main amd64 libdjvulibre21 amd64 3.5.27.1-7 [568 kB] Get:741 http://deb.debian.org/debian stretch/main amd64 libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:742 http://deb.debian.org/debian stretch/main amd64 libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:743 http://deb.debian.org/debian stretch/main amd64 libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:744 http://deb.debian.org/debian stretch/main amd64 libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:745 http://deb.debian.org/debian stretch/main amd64 libexpat1-dev amd64 2.2.0-2+deb9u3 [134 kB] Get:746 http://deb.debian.org/debian stretch/main amd64 libfftw3-single3 amd64 3.3.5-3 [776 kB] Get:747 http://deb.debian.org/debian stretch/main amd64 libfile-desktopentry-perl all 0.22-1 [19.2 kB] Get:748 http://deb.debian.org/debian stretch/main amd64 libfile-fcntllock-perl amd64 0.22-3+b2 [35.3 kB] Get:749 http://deb.debian.org/debian stretch/main amd64 libfile-which-perl all 1.21-1 [14.3 kB] Get:750 http://deb.debian.org/debian stretch/main amd64 libfile-homedir-perl all 1.00-1 [48.9 kB] Get:751 http://deb.debian.org/debian stretch/main amd64 libfile-mimeinfo-perl all 0.27-1 [50.2 kB] Get:752 http://deb.debian.org/debian stretch/main amd64 libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:753 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:754 http://deb.debian.org/debian stretch/main amd64 libfreecontact0v5 amd64 1.0.21-5 [70.1 kB] Get:755 http://deb.debian.org/debian stretch/main amd64 libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:756 http://deb.debian.org/debian stretch/main amd64 libfribidi0 amd64 0.19.7-1+deb9u1 [45.6 kB] Get:757 http://deb.debian.org/debian stretch/main amd64 libfuse2 amd64 2.9.7-1+deb9u2 [126 kB] Get:758 http://deb.debian.org/debian stretch/main amd64 libg20 amd64 0.72-6 [42.5 kB] Get:759 http://deb.debian.org/debian stretch/main amd64 libgail18 amd64 2.24.31-2 [54.1 kB] Get:760 http://deb.debian.org/debian stretch/main amd64 libgail-common amd64 2.24.31-2 [153 kB] Get:761 http://deb.debian.org/debian stretch/main amd64 libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:762 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:763 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:764 http://deb.debian.org/debian stretch/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:765 http://deb.debian.org/debian stretch/main amd64 libgraph-perl all 1:0.96-2 [126 kB] Get:766 http://deb.debian.org/debian stretch/main amd64 libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:767 http://deb.debian.org/debian stretch/main amd64 libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:768 http://deb.debian.org/debian stretch/main amd64 libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:769 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:770 http://deb.debian.org/debian stretch/main amd64 libxml-twig-perl all 1:3.50-1 [179 kB] Get:771 http://deb.debian.org/debian stretch/main amd64 libxml-xpath-perl all 1.40-1 [69.2 kB] Get:772 http://deb.debian.org/debian stretch/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get:773 http://deb.debian.org/debian stretch/main amd64 libntlm0 amd64 1.4-8 [20.9 kB] Get:774 http://deb.debian.org/debian stretch/main amd64 libgsasl7 amd64 1.8.0-8+b2 [207 kB] Get:775 http://deb.debian.org/debian stretch/main amd64 libgtk-3-bin amd64 3.22.11-1 [110 kB] Get:776 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-bin amd64 2.24.31-2 [47.1 kB] Get:777 http://deb.debian.org/debian stretch/main amd64 libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:778 http://deb.debian.org/debian stretch/main amd64 libjsr305-java all 0.1~+svn49-10 [26.5 kB] Get:779 http://deb.debian.org/debian stretch/main amd64 libguava-java all 19.0-1 [2028 kB] Get:780 http://deb.debian.org/debian stretch/main amd64 libsz2 amd64 0.3.2-1 [5730 B] Get:781 http://deb.debian.org/debian stretch/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-3+deb9u1 [1282 kB] Get:782 http://deb.debian.org/debian stretch/main amd64 beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:783 http://deb.debian.org/debian stretch/main amd64 libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:784 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:785 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:786 http://deb.debian.org/debian stretch/main amd64 libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:787 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:788 http://deb.debian.org/debian stretch/main amd64 libicu-dev amd64 57.1-6+deb9u4 [16.5 MB] Get:789 http://deb.debian.org/debian stretch/main amd64 libilmbase12 amd64 2.2.0-12 [85.3 kB] Get:790 http://deb.debian.org/debian stretch/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:791 http://deb.debian.org/debian stretch/main amd64 libio-stringy-perl all 2.111-2 [61.2 kB] Get:792 http://deb.debian.org/debian stretch/main amd64 libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:793 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:794 http://deb.debian.org/debian stretch/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:795 http://deb.debian.org/debian stretch/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:796 http://deb.debian.org/debian stretch/main amd64 libjxr0 amd64 1.1-6+b1 [160 kB] Get:797 http://deb.debian.org/debian stretch/main amd64 libjxr-tools amd64 1.1-6+b1 [17.0 kB] Get:798 http://deb.debian.org/debian stretch/main amd64 libmbedcrypto0 amd64 2.4.2-1+deb9u3 [171 kB] Get:799 http://deb.debian.org/debian stretch/main amd64 libmbedx509-0 amd64 2.4.2-1+deb9u3 [70.7 kB] Get:800 http://deb.debian.org/debian stretch/main amd64 libmbedtls10 amd64 2.4.2-1+deb9u3 [102 kB] Get:801 http://deb.debian.org/debian stretch/main amd64 libmbedtls-dev amd64 2.4.2-1+deb9u3 [161 kB] Get:802 http://deb.debian.org/debian stretch/main amd64 libkdf5-2 amd64 2.8.1+dfsg-2 [13.6 kB] Get:803 http://deb.debian.org/debian stretch/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:804 http://deb.debian.org/debian stretch/main amd64 libkyotocabinet16v5 amd64 1.2.76-4.2+b1 [298 kB] Get:805 http://deb.debian.org/debian stretch/main amd64 liblapack-dev amd64 3.7.0-2 [2170 kB] Get:806 http://deb.debian.org/debian stretch/main amd64 liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:807 http://deb.debian.org/debian stretch/main amd64 liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:808 http://deb.debian.org/debian stretch/main amd64 libopenexr22 amd64 2.2.0-11+b1 [577 kB] Get:809 http://deb.debian.org/debian stretch/main amd64 libwmf0.2-7 amd64 0.2.8.4-10.6 [167 kB] Get:810 http://deb.debian.org/debian stretch/main amd64 libmagickcore-6.q16-3-extra amd64 8:6.9.7.4+dfsg-11+deb9u8 [191 kB] Get:811 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:812 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:813 http://deb.debian.org/debian stretch/main amd64 mailutils-common all 1:3.1.1-1 [642 kB] Get:814 http://deb.debian.org/debian stretch/main amd64 libpython2.7 amd64 2.7.13-2+deb9u3 [1071 kB] Get:815 http://deb.debian.org/debian stretch/main amd64 libmailutils5 amd64 1:3.1.1-1 [817 kB] Get:816 http://deb.debian.org/debian stretch/main amd64 libmath-derivative-perl all 0.04-2 [7208 B] Get:817 http://deb.debian.org/debian stretch/main amd64 libmath-spline-perl all 0.02-1 [7992 B] Get:818 http://deb.debian.org/debian stretch/main amd64 libmime-tools-perl all 5.508-1 [212 kB] Get:819 http://deb.debian.org/debian stretch/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:820 http://deb.debian.org/debian stretch/main amd64 libncbi-vdb2 amd64 2.8.1+dfsg-2 [1037 kB] Get:821 http://deb.debian.org/debian stretch/main amd64 libncbi-wvdb2 amd64 2.8.1+dfsg-2 [939 kB] Get:822 http://deb.debian.org/debian stretch/main amd64 libncbi6 amd64 6.1.20170106+dfsg1-0+deb9u1 [4024 kB] Get:823 http://deb.debian.org/debian stretch/main amd64 libtinfo-dev amd64 6.0+20161126-1+deb9u2 [79.2 kB] Get:824 http://deb.debian.org/debian stretch/main amd64 libncurses5-dev amd64 6.0+20161126-1+deb9u2 [175 kB] Get:825 http://deb.debian.org/debian stretch/main amd64 libnet-dbus-perl amd64 1.1.0-4+b1 [179 kB] Get:826 http://deb.debian.org/debian stretch/main amd64 libnetpbm10 amd64 2:10.0-15.3+b2 [86.7 kB] Get:827 http://deb.debian.org/debian stretch/main amd64 libnotify4 amd64 0.7.7-2 [21.9 kB] Get:828 http://deb.debian.org/debian stretch/main amd64 libole-storage-lite-perl all 0.19-1+deb9u1 [23.4 kB] Get:829 http://deb.debian.org/debian stretch/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:830 http://deb.debian.org/debian stretch/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:831 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:832 http://deb.debian.org/debian stretch/main amd64 libpcre16-3 amd64 2:8.39-3 [258 kB] Get:833 http://deb.debian.org/debian stretch/main amd64 libpcre32-3 amd64 2:8.39-3 [248 kB] Get:834 http://deb.debian.org/debian stretch/main amd64 libpcre3-dev amd64 2:8.39-3 [647 kB] Get:835 http://deb.debian.org/debian stretch/main amd64 libperl4-corelibs-perl all 0.003-2+deb9u1 [38.0 kB] Get:836 http://deb.debian.org/debian stretch/main amd64 libpicard-java all 2.8.1+dfsg-1 [1190 kB] Get:837 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:838 http://deb.debian.org/debian stretch/main amd64 libpng-dev amd64 1.6.28-1+deb9u1 [250 kB] Get:839 http://deb.debian.org/debian stretch/main amd64 libpng-tools amd64 1.6.28-1+deb9u1 [133 kB] Get:840 http://deb.debian.org/debian stretch/main amd64 libpod-coverage-perl all 0.23-1 [23.9 kB] Get:841 http://deb.debian.org/debian stretch/main amd64 libpostscript-perl all 0.06-2 [31.4 kB] Get:842 http://deb.debian.org/debian stretch/main amd64 libpython2.7-dev amd64 2.7.13-2+deb9u3 [28.2 MB] Get:843 http://deb.debian.org/debian stretch/main amd64 libpython-dev amd64 2.7.13-2 [20.1 kB] Get:844 http://deb.debian.org/debian stretch/main amd64 libqt4-xml amd64 4:4.8.7+dfsg-11 [143 kB] Get:845 http://deb.debian.org/debian stretch/main amd64 libqtdbus4 amd64 4:4.8.7+dfsg-11 [232 kB] Get:846 http://deb.debian.org/debian stretch/main amd64 qtchooser amd64 63-g13a3d08-1 [25.2 kB] Get:847 http://deb.debian.org/debian stretch/main amd64 qdbus amd64 4:4.8.7+dfsg-11 [76.8 kB] Get:848 http://deb.debian.org/debian stretch/main amd64 libqt4-dbus amd64 4:4.8.7+dfsg-11 [52.7 kB] Get:849 http://deb.debian.org/debian stretch/main amd64 libreadline-dev amd64 7.0-3 [132 kB] Get:850 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:851 http://deb.debian.org/debian stretch/main amd64 libtask-weaken-perl all 1.04-1 [7990 B] Get:852 http://deb.debian.org/debian stretch/main amd64 libsoap-lite-perl all 1.20-1 [259 kB] Get:853 http://deb.debian.org/debian stretch/main amd64 libsort-naturally-perl all 1.03-1 [13.9 kB] Get:854 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:855 http://deb.debian.org/debian stretch/main amd64 libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:856 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:857 http://deb.debian.org/debian stretch/main amd64 libsprng2 amd64 2.0a-10 [75.6 kB] Get:858 http://deb.debian.org/debian stretch/main amd64 libsquizz amd64 0.99c+dfsg-1 [265 kB] Get:859 http://deb.debian.org/debian stretch/main amd64 libstaden-read11 amd64 1.14.8-2 [311 kB] Get:860 http://deb.debian.org/debian stretch/main amd64 libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:861 http://deb.debian.org/debian stretch/main amd64 libsub-name-perl amd64 0.21-1 [13.1 kB] Get:862 http://deb.debian.org/debian stretch/main amd64 libsvg-perl all 2.64-1 [69.8 kB] Get:863 http://deb.debian.org/debian stretch/main amd64 libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:864 http://deb.debian.org/debian stretch/main amd64 libsvg-graph-perl all 0.02-2 [130 kB] Get:865 http://deb.debian.org/debian stretch/main amd64 libterm-readkey-perl amd64 2.37-1 [27.2 kB] Get:866 http://deb.debian.org/debian stretch/main amd64 libtest-pod-perl all 1.51-1 [14.7 kB] Get:867 http://deb.debian.org/debian stretch/main amd64 libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:868 http://deb.debian.org/debian stretch/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:869 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:870 http://deb.debian.org/debian stretch/main amd64 libutempter0 amd64 1.1.6-3 [7812 B] Get:871 http://deb.debian.org/debian stretch/main amd64 libwebpdemux2 amd64 0.5.2-1 [73.7 kB] Get:872 http://deb.debian.org/debian stretch/main amd64 libwebpmux2 amd64 0.5.2-1 [83.9 kB] Get:873 http://deb.debian.org/debian stretch/main amd64 libwxbase3.0-0v5 amd64 3.0.2+dfsg-4 [1073 kB] Get:874 http://deb.debian.org/debian stretch/main amd64 libwxgtk3.0-0v5 amd64 3.0.2+dfsg-4 [4493 kB] Get:875 http://deb.debian.org/debian stretch/main amd64 libx11-protocol-perl all 0.56-7 [150 kB] Get:876 http://deb.debian.org/debian stretch/main amd64 libxerces-c3.1 amd64 3.1.4+debian-2+deb9u1 [842 kB] Get:877 http://deb.debian.org/debian stretch/main amd64 libxml-perl all 0.08-2 [113 kB] Get:878 http://deb.debian.org/debian stretch/main amd64 libxml-regexp-perl all 0.04-1 [8370 B] Get:879 http://deb.debian.org/debian stretch/main amd64 libxml-dom-perl all 1.44-2 [179 kB] Get:880 http://deb.debian.org/debian stretch/main amd64 libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:881 http://deb.debian.org/debian stretch/main amd64 libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:882 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:883 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:884 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:885 http://deb.debian.org/debian stretch/main amd64 libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:886 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:887 http://deb.debian.org/debian stretch/main amd64 libxslt1.1 amd64 1.1.29-2.1+deb9u2 [233 kB] Get:888 http://deb.debian.org/debian stretch/main amd64 libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:889 http://deb.debian.org/debian stretch/main amd64 libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:890 http://deb.debian.org/debian stretch/main amd64 libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:891 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:892 http://deb.debian.org/debian stretch/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:893 http://deb.debian.org/debian stretch/main amd64 libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:894 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:895 http://deb.debian.org/debian stretch/main amd64 libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:896 http://deb.debian.org/debian stretch/main amd64 libyaml-perl all 1.21-1 [64.8 kB] Get:897 http://deb.debian.org/debian stretch/main amd64 libyaml-tiny-perl all 1.70-1 [32.0 kB] Get:898 http://deb.debian.org/debian stretch/main amd64 lmodern all 2.004.5-3 [9461 kB] Get:899 http://deb.debian.org/debian stretch/main amd64 loki amd64 2.4.7.4-6+b1 [359 kB] Get:900 http://deb.debian.org/debian stretch/main amd64 lynx-common all 2.8.9dev11-1 [1098 kB] Get:901 http://deb.debian.org/debian stretch/main amd64 macs amd64 2.1.1.20160309-1 [1011 kB] Get:902 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:903 http://deb.debian.org/debian stretch/main amd64 mailutils amd64 1:3.1.1-1 [573 kB] Get:904 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] Get:905 http://deb.debian.org/debian stretch/main amd64 mapsembler2 amd64 2.2.3+dfsg-3+b1 [250 kB] Get:906 http://deb.debian.org/debian stretch/main amd64 maq amd64 0.7.1-7 [311 kB] Get:907 http://deb.debian.org/debian stretch/main amd64 melting amd64 4.3.1+dfsg-2+b1 [663 kB] Get:908 http://deb.debian.org/debian stretch/main amd64 minia amd64 1.6906-1+b2 [67.9 kB] Get:909 http://deb.debian.org/debian stretch/main amd64 mipe all 1.1-5 [62.4 kB] Get:910 http://deb.debian.org/debian stretch/main amd64 mlv-smile amd64 1.47-4+b1 [190 kB] Get:911 http://deb.debian.org/debian stretch/main amd64 mothur amd64 1.38.1.1-1 [4740 kB] Get:912 http://deb.debian.org/debian stretch/main amd64 mrbayes amd64 3.2.6+dfsg-1+b4 [588 kB] Get:913 http://deb.debian.org/debian stretch/main amd64 muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:914 http://deb.debian.org/debian stretch/main amd64 mustang amd64 3.2.3-1 [113 kB] Get:915 http://deb.debian.org/debian stretch/main amd64 ncbi-epcr amd64 2.3.12-1-4 [113 kB] Get:916 http://deb.debian.org/debian stretch/main amd64 ncbi-tools-bin amd64 6.1.20170106+dfsg1-0+deb9u1 [521 kB] Get:917 http://deb.debian.org/debian stretch/main amd64 ncoils amd64 2002-4+b1 [21.4 kB] Get:918 http://deb.debian.org/debian stretch/main amd64 netpbm amd64 2:10.0-15.3+b2 [1029 kB] Get:919 http://deb.debian.org/debian stretch/main amd64 notification-daemon amd64 3.20.0-1+b1 [60.5 kB] Get:920 http://deb.debian.org/debian stretch/main amd64 paraclu amd64 9-1+b2 [10.5 kB] Get:921 http://deb.debian.org/debian stretch/main amd64 parsinsert amd64 1.04-2 [59.8 kB] Get:922 http://deb.debian.org/debian stretch/main amd64 python-networkx all 1.11-2 [822 kB] Get:923 http://deb.debian.org/debian stretch/main amd64 pdb2pqr amd64 2.1.1+dfsg-2 [373 kB] Get:924 http://deb.debian.org/debian stretch/main amd64 perl-doc all 5.24.1-3+deb9u7 [7145 kB] Get:925 http://deb.debian.org/debian stretch/main amd64 perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:926 http://deb.debian.org/debian stretch/main amd64 perm amd64 0.4.0-2 [121 kB] Get:927 http://deb.debian.org/debian stretch/main amd64 phylip amd64 1:3.696+dfsg-5 [942 kB] Get:928 http://deb.debian.org/debian stretch/main amd64 openmpi-common all 2.0.2-2 [149 kB] Get:929 http://deb.debian.org/debian stretch/main amd64 openmpi-bin amd64 2.0.2-2 [186 kB] Get:930 http://deb.debian.org/debian stretch/main amd64 phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:931 http://deb.debian.org/debian stretch/main amd64 phyutility amd64 2.7.3-1 [897 kB] Get:932 http://deb.debian.org/debian stretch/main amd64 picard-tools all 2.8.1+dfsg-1 [7788 B] Get:933 http://deb.debian.org/debian stretch/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:934 http://deb.debian.org/debian stretch/main amd64 plink amd64 1.07-7 [1186 kB] Get:935 http://deb.debian.org/debian stretch/main amd64 poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:936 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:937 http://deb.debian.org/debian stretch/main amd64 preview-latex-style all 11.90-1 [200 kB] Get:938 http://deb.debian.org/debian stretch/main amd64 prime-phylo amd64 1.0.11-4+b3 [856 kB] Get:939 http://deb.debian.org/debian stretch/main amd64 primer3 amd64 2.3.7-3 [173 kB] Get:940 http://deb.debian.org/debian stretch/main amd64 probabel amd64 0.4.5-3+b1 [544 kB] Get:941 http://deb.debian.org/debian stretch/main amd64 probalign amd64 1.4-5 [65.4 kB] Get:942 http://deb.debian.org/debian stretch/main amd64 probcons amd64 1.12-11 [107 kB] Get:943 http://deb.debian.org/debian stretch/main amd64 proda amd64 1.0-10 [60.1 kB] Get:944 http://deb.debian.org/debian stretch/main amd64 prodigal amd64 1:2.6.3-1+b1 [714 kB] Get:945 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:946 http://deb.debian.org/debian stretch/main amd64 texlive-base all 2016.20170123-5 [15.8 MB] Get:947 http://deb.debian.org/debian stretch/main amd64 texlive-latex-base all 2016.20170123-5 [861 kB] Get:948 http://deb.debian.org/debian stretch/main amd64 texlive-generic-recommended all 2016.20170123-5 [2889 kB] Get:949 http://deb.debian.org/debian stretch/main amd64 texlive-latex-recommended all 2016.20170123-5 [13.2 MB] Get:950 http://deb.debian.org/debian stretch/main amd64 texlive-pictures all 2016.20170123-5 [3908 kB] Get:951 http://deb.debian.org/debian stretch/main amd64 texlive-pstricks all 2016.20170123-5 [26.2 MB] Get:952 http://deb.debian.org/debian stretch/main amd64 prosper all 1.00.4+cvs.2007.05.01-4.1 [420 kB] Get:953 http://deb.debian.org/debian stretch/main amd64 ps2eps amd64 1.68+binaryfree-2 [37.9 kB] Get:954 http://deb.debian.org/debian stretch/main amd64 psmisc amd64 22.21-2.1+b2 [123 kB] Get:955 http://deb.debian.org/debian stretch/main amd64 python-biopython-doc all 1.68+dfsg-3 [11.8 MB] Get:956 http://deb.debian.org/debian stretch/main amd64 python-cairo amd64 1.8.8-2.2 [42.5 kB] Get:957 http://deb.debian.org/debian stretch/main amd64 python-chardet all 2.3.0-2 [96.0 kB] Get:958 http://deb.debian.org/debian stretch/main amd64 python2.7-dev amd64 2.7.13-2+deb9u3 [290 kB] Get:959 http://deb.debian.org/debian stretch/main amd64 python-dev amd64 2.7.13-2 [1126 B] Get:960 http://deb.debian.org/debian stretch/main amd64 python-gobject-2 amd64 2.28.6-13 [289 kB] Get:961 http://deb.debian.org/debian stretch/main amd64 python-gtk2 amd64 2.24.0-5.1 [642 kB] Get:962 http://deb.debian.org/debian stretch/main amd64 python-glade2 amd64 2.24.0-5.1 [43.4 kB] Get:963 http://deb.debian.org/debian stretch/main amd64 python-gmpy amd64 1.17-3 [74.3 kB] Get:964 http://deb.debian.org/debian stretch/main amd64 python-pil amd64 4.0.0-4+deb9u1 [376 kB] Get:965 http://deb.debian.org/debian stretch/main amd64 python-imaging all 4.0.0-4+deb9u1 [50.5 kB] Get:966 http://deb.debian.org/debian stretch/main amd64 python-pyglet all 1.1.4.dfsg-3 [736 kB] Get:967 http://deb.debian.org/debian stretch/main amd64 python-pygraphviz amd64 1.4~rc1-1 [75.9 kB] Get:968 http://deb.debian.org/debian stretch/main amd64 python-renderpm amd64 3.3.0-2+deb9u1 [47.3 kB] Get:969 http://deb.debian.org/debian stretch/main amd64 python-sympy-doc all 1.0-3 [4876 kB] Get:970 http://deb.debian.org/debian stretch/main amd64 python-tk amd64 2.7.13-1 [27.4 kB] Get:971 http://deb.debian.org/debian stretch/main amd64 python-wxversion all 3.0.2.0+dfsg-4 [114 kB] Get:972 http://deb.debian.org/debian stretch/main amd64 python-wxgtk3.0 amd64 3.0.2.0+dfsg-4 [5270 kB] Get:973 http://deb.debian.org/debian stretch/main amd64 python-yaml amd64 3.12-1 [119 kB] Get:974 http://deb.debian.org/debian stretch/main amd64 python3-numpy amd64 1:1.12.1-3 [1934 kB] Get:975 http://deb.debian.org/debian stretch/main amd64 python3-reportlab-accel amd64 3.3.0-2+deb9u1 [32.1 kB] Get:976 http://deb.debian.org/debian stretch/main amd64 python3-reportlab all 3.3.0-2+deb9u1 [474 kB] Get:977 http://deb.debian.org/debian stretch/main amd64 python3-biopython amd64 1.68+dfsg-3 [1163 kB] Get:978 http://deb.debian.org/debian stretch/main amd64 python3-pil amd64 4.0.0-4+deb9u1 [377 kB] Get:979 http://deb.debian.org/debian stretch/main amd64 python3-renderpm amd64 3.3.0-2+deb9u1 [47.4 kB] Get:980 http://deb.debian.org/debian stretch/main amd64 qt-at-spi amd64 0.4.0-5 [61.6 kB] Get:981 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:982 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:983 http://deb.debian.org/debian stretch/main amd64 xauth amd64 1:1.0.9-1+b2 [39.6 kB] Get:984 http://deb.debian.org/debian stretch/main amd64 r-base-dev all 3.3.3-1 [4402 B] Get:985 http://deb.debian.org/debian stretch/main amd64 r-bioc-limma amd64 3.30.8+dfsg-1 [1055 kB] Get:986 http://deb.debian.org/debian stretch/main amd64 r-bioc-edger amd64 3.14.0+dfsg-1 [543 kB] Get:987 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:988 http://deb.debian.org/debian stretch/main amd64 r-bioc-hilbertvis amd64 1.32.0-1 [972 kB] Get:989 http://deb.debian.org/debian stretch/main amd64 r-cran-boot all 1.3-18-2 [577 kB] Get:990 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:991 http://deb.debian.org/debian stretch/main amd64 r-cran-class amd64 7.3-14-1 [80.9 kB] Get:992 http://deb.debian.org/debian stretch/main amd64 r-cran-cluster amd64 2.0.5-1 [490 kB] Get:993 http://deb.debian.org/debian stretch/main amd64 r-cran-codetools all 0.2-15-1 [46.2 kB] Get:994 http://deb.debian.org/debian stretch/main amd64 r-cran-foreign amd64 0.8.67-1 [211 kB] Get:995 http://deb.debian.org/debian stretch/main amd64 r-cran-g.data all 2.4-1 [86.1 kB] Get:996 http://deb.debian.org/debian stretch/main amd64 r-cran-kernsmooth amd64 2.23-15-2 [81.7 kB] Get:997 http://deb.debian.org/debian stretch/main amd64 r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:998 http://deb.debian.org/debian stretch/main amd64 r-cran-nlme amd64 3.1.129-1 [2042 kB] Get:999 http://deb.debian.org/debian stretch/main amd64 r-cran-mgcv amd64 1.8-16-1 [2106 kB] Get:1000 http://deb.debian.org/debian stretch/main amd64 r-cran-multicore amd64 0.2-1 [19.2 kB] Get:1001 http://deb.debian.org/debian stretch/main amd64 r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:1002 http://deb.debian.org/debian stretch/main amd64 r-cran-permute all 0.9-4-1 [493 kB] Get:1003 http://deb.debian.org/debian stretch/main amd64 r-cran-pvclust all 2.0-0-1 [147 kB] Get:1004 http://deb.debian.org/debian stretch/main amd64 r-cran-qtl amd64 1.40-8-1 [4201 kB] Get:1005 http://deb.debian.org/debian stretch/main amd64 r-cran-survival amd64 2.40-1-1 [4863 kB] Get:1006 http://deb.debian.org/debian stretch/main amd64 r-cran-rpart amd64 4.1-10-2 [861 kB] Get:1007 http://deb.debian.org/debian stretch/main amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] Get:1008 http://deb.debian.org/debian stretch/main amd64 r-cran-vegan amd64 2.4-2-1 [2605 kB] Get:1009 http://deb.debian.org/debian stretch/main amd64 r-doc-html all 3.3.3-1 [551 kB] Get:1010 http://deb.debian.org/debian stretch/main amd64 r-other-mott-happy.hbrem amd64 2.4-1 [145 kB] Get:1011 http://deb.debian.org/debian stretch/main amd64 r-recommended all 3.3.3-1 [2706 B] Get:1012 http://deb.debian.org/debian stretch/main amd64 rubygems-integration all 1.11 [4994 B] Get:1013 http://deb.debian.org/debian stretch/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:1014 http://deb.debian.org/debian stretch/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:1015 http://deb.debian.org/debian stretch/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:1016 http://deb.debian.org/debian stretch/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:1017 http://deb.debian.org/debian stretch/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:1018 http://deb.debian.org/debian stretch/main amd64 libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:1019 http://deb.debian.org/debian stretch/main amd64 ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:1020 http://deb.debian.org/debian stretch/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:1021 http://deb.debian.org/debian stretch/main amd64 rake all 10.5.0-2+deb9u1 [49.7 kB] Get:1022 http://deb.debian.org/debian stretch/main amd64 raster3d amd64 3.0-3-2+b1 [168 kB] Get:1023 http://deb.debian.org/debian stretch/main amd64 raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:1024 http://deb.debian.org/debian stretch/main amd64 readseq amd64 1-11+b1 [56.1 kB] Get:1025 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:1026 http://deb.debian.org/debian stretch/main amd64 rnahybrid amd64 2.1.2-1+b1 [159 kB] Get:1027 http://deb.debian.org/debian stretch/main amd64 rtax all 0.984-5 [26.1 kB] Get:1028 http://deb.debian.org/debian stretch/main amd64 samtools amd64 1.3.1-3 [254 kB] Get:1029 http://deb.debian.org/debian stretch/main amd64 sibsim4 amd64 0.20-2+b1 [30.3 kB] Get:1030 http://deb.debian.org/debian stretch/main amd64 sigma-align amd64 1.1.3-4+b1 [24.3 kB] Get:1031 http://deb.debian.org/debian stretch/main amd64 sim4 amd64 0.0.20121010-4 [396 kB] Get:1032 http://deb.debian.org/debian stretch/main amd64 smalt amd64 0.7.6-6 [112 kB] Get:1033 http://deb.debian.org/debian stretch/main amd64 soapdenovo amd64 1.05-3 [343 kB] Get:1034 http://deb.debian.org/debian stretch/main amd64 soapdenovo2 amd64 240+dfsg1-2 [450 kB] Get:1035 http://deb.debian.org/debian stretch/main amd64 squizz amd64 0.99c+dfsg-1 [31.2 kB] Get:1036 http://deb.debian.org/debian stretch/main amd64 sra-toolkit amd64 2.8.1-2+dfsg-2 [1487 kB] Get:1037 http://deb.debian.org/debian stretch/main amd64 ssake all 3.8.4-1 [30.1 kB] Get:1038 http://deb.debian.org/debian stretch/main amd64 staden-io-lib-utils amd64 1.14.8-2 [250 kB] Get:1039 http://deb.debian.org/debian stretch/main amd64 t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:1040 http://deb.debian.org/debian stretch/main amd64 tabix amd64 1.3.2-2 [257 kB] Get:1041 http://deb.debian.org/debian stretch/main amd64 tcl8.6 amd64 8.6.6+dfsg-1+b1 [123 kB] Get:1042 http://deb.debian.org/debian stretch/main amd64 tcl amd64 8.6.0+9 [5468 B] Get:1043 http://deb.debian.org/debian stretch/main amd64 tcpd amd64 7.6.q-26 [23.3 kB] Get:1044 http://deb.debian.org/debian stretch/main amd64 tex-gyre all 20160520-1 [5000 kB] Get:1045 http://deb.debian.org/debian stretch/main amd64 texlive-extra-utils all 2016.20170123-5 [19.8 MB] Get:1046 http://deb.debian.org/debian stretch/main amd64 texlive-font-utils all 2016.20170123-5 [1736 kB] Get:1047 http://deb.debian.org/debian stretch/main amd64 fonts-stix all 1.1.1-4 [590 kB] Get:1048 http://deb.debian.org/debian stretch/main amd64 ttf-adf-accanthis all 0.20090423-2 [401 kB] Get:1049 http://deb.debian.org/debian stretch/main amd64 ttf-adf-gillius all 0.20090423-2 [400 kB] Get:1050 http://deb.debian.org/debian stretch/main amd64 ttf-adf-universalis all 0.20090423-2 [221 kB] Get:1051 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-extra all 2016.20170123-5 [256 MB] Get:1052 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-extra-doc all 2016.20170123-5 [82.5 MB] Get:1053 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-recommended all 2016.20170123-5 [5307 kB] Get:1054 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-recommended-doc all 2016.20170123-5 [2660 kB] Get:1055 http://deb.debian.org/debian stretch/main amd64 texlive-generic-extra all 2016.20170123-5 [14.9 MB] Get:1056 http://deb.debian.org/debian stretch/main amd64 texlive-latex-base-doc all 2016.20170123-5 [45.6 MB] Get:1057 http://deb.debian.org/debian stretch/main amd64 texlive-latex-extra all 2016.20170123-5 [10.6 MB] Get:1058 http://deb.debian.org/debian stretch/main amd64 texlive-latex-extra-doc all 2016.20170123-5 [364 MB] Get:1059 http://deb.debian.org/debian stretch/main amd64 texlive-latex-recommended-doc all 2016.20170123-5 [40.6 MB] Get:1060 http://deb.debian.org/debian stretch/main amd64 texlive-pictures-doc all 2016.20170123-5 [105 MB] Get:1061 http://deb.debian.org/debian stretch/main amd64 texlive-pstricks-doc all 2016.20170123-5 [238 MB] Get:1062 http://deb.debian.org/debian stretch/main amd64 theseus amd64 3.3.0-5+b1 [432 kB] Get:1063 http://deb.debian.org/debian stretch/main amd64 tigr-glimmer amd64 3.02b-1 [283 kB] Get:1064 http://deb.debian.org/debian stretch/main amd64 tipa all 2:1.3-20 [2972 kB] Get:1065 http://deb.debian.org/debian stretch/main amd64 tk8.6 amd64 8.6.6-1+b1 [71.8 kB] Get:1066 http://deb.debian.org/debian stretch/main amd64 tk amd64 8.6.0+9 [5506 B] Get:1067 http://deb.debian.org/debian stretch/main amd64 tm-align amd64 20160521+dfsg-2 [868 kB] Get:1068 http://deb.debian.org/debian stretch/main amd64 tree-puzzle amd64 5.2-8+b3 [135 kB] Get:1069 http://deb.debian.org/debian stretch/main amd64 tree-puzzle-doc all 5.2-8 [401 kB] Get:1070 http://deb.debian.org/debian stretch/main amd64 velvet amd64 1.2.10+dfsg1-3+b1 [688 kB] Get:1071 http://deb.debian.org/debian stretch/main amd64 wise-data all 2.4.1-19 [108 kB] Get:1072 http://deb.debian.org/debian stretch/main amd64 wise amd64 2.4.1-19 [993 kB] Get:1073 http://deb.debian.org/debian stretch/main amd64 x11-xserver-utils amd64 7.7+7+b1 [167 kB] Get:1074 http://deb.debian.org/debian stretch/main amd64 xbitmaps all 1.1.1-2 [32.1 kB] Get:1075 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:1076 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:1077 http://deb.debian.org/debian stretch/main amd64 xterm amd64 327-2 [663 kB] Get:1078 http://deb.debian.org/debian stretch/main amd64 zalign amd64 0.9.1-2+b3 [48.6 kB] Get:1079 http://deb.debian.org/debian stretch/main amd64 acedb-other amd64 4.9.39+dfsg.02-1 [16.8 kB] Get:1080 http://deb.debian.org/debian stretch/main amd64 ampliconnoise amd64 1.29-6 [476 kB] Get:1081 http://deb.debian.org/debian stretch/main amd64 autodock-vina amd64 1.1.2-3+b6 [175 kB] Get:1082 http://deb.debian.org/debian stretch/main amd64 libeigen3-dev all 3.3.2-1 [839 kB] Get:1083 http://deb.debian.org/debian stretch/main amd64 cain-solvers amd64 1.10+dfsg-2 [1086 kB] Get:1084 http://deb.debian.org/debian stretch/main amd64 cain all 1.10+dfsg-2 [10.8 MB] Get:1085 http://deb.debian.org/debian stretch/main amd64 cain-examples all 1.10+dfsg-2 [170 kB] Get:1086 http://deb.debian.org/debian stretch/main amd64 concavity amd64 0.1+dfsg.1-1 [295 kB] Get:1087 http://deb.debian.org/debian stretch/main amd64 conservation-code all 20110309.0-5 [23.6 kB] Get:1088 http://deb.debian.org/debian stretch/main amd64 datamash amd64 1.0.7-1 [744 kB] Get:1089 http://deb.debian.org/debian stretch/main amd64 disulfinder-data all 1.2.11-6 [1129 kB] Get:1090 http://deb.debian.org/debian stretch/main amd64 disulfinder amd64 1.2.11-6 [261 kB] Get:1091 http://deb.debian.org/debian stretch/main amd64 fasttree amd64 2.1.9-1 [132 kB] Get:1092 http://deb.debian.org/debian stretch/main amd64 libffindex0 amd64 0.9.9.7-3 [16.7 kB] Get:1093 http://deb.debian.org/debian stretch/main amd64 ffindex amd64 0.9.9.7-3 [29.6 kB] Get:1094 http://deb.debian.org/debian stretch/main amd64 freecontact amd64 1.0.21-5 [335 kB] Get:1095 http://deb.debian.org/debian stretch/main amd64 gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:1096 http://deb.debian.org/debian stretch/main amd64 gromacs-data all 2016.1-2 [22.1 MB] Get:1097 http://deb.debian.org/debian stretch/main amd64 libgromacs2 amd64 2016.1-2 [11.3 MB] Get:1098 http://deb.debian.org/debian stretch/main amd64 gromacs amd64 2016.1-2 [234 kB] Get:1099 http://deb.debian.org/debian stretch/main amd64 hhsuite-data all 3.0~beta2+dfsg-3 [2164 kB] Get:1100 http://deb.debian.org/debian stretch/main amd64 hhsuite amd64 3.0~beta2+dfsg-3 [1005 kB] Get:1101 http://deb.debian.org/debian stretch/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:1102 http://deb.debian.org/debian stretch/main amd64 libtxc-dxtn-s2tc amd64 1.0+git20151227-2 [48.4 kB] Get:1103 http://deb.debian.org/debian stretch/main amd64 lynx amd64 2.8.9dev11-1 [632 kB] Get:1104 http://deb.debian.org/debian stretch/main amd64 med-tasks all 3.0.1 [14.3 kB] Get:1105 http://deb.debian.org/debian stretch/main amd64 med-config all 3.0.1 [17.1 kB] Get:1106 http://deb.debian.org/debian stretch/main amd64 med-cloud all 3.0.1 [15.6 kB] Get:1107 http://deb.debian.org/debian stretch/main amd64 mpi-default-bin amd64 1.8 [4050 B] Get:1108 http://deb.debian.org/debian stretch/main amd64 neobio all 0.0.20030929-2 [291 kB] Get:1109 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] Get:1110 http://deb.debian.org/debian stretch/main amd64 pynast all 1.2.2-2 [83.5 kB] Get:1111 http://deb.debian.org/debian stretch/main amd64 python-cogent amd64 1.9-9 [1063 kB] Get:1112 http://deb.debian.org/debian stretch/main amd64 python-mpi4py amd64 2.0.0-2.1+deb9u1 [425 kB] Get:1113 http://deb.debian.org/debian stretch/main amd64 snap amd64 2013-11-29-6 [373 kB] Get:1114 http://deb.debian.org/debian stretch/main amd64 vcftools amd64 0.1.14+dfsg-4+deb9u1 [458 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2126 MB in 3min 14s (10.9 MB/s) Selecting previously unselected package lsb-base. 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Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.24.1-3+deb9u7) ... Selecting previously unselected package perl-tk. Preparing to unpack .../787-perl-tk_1%3a804.033-1+b3_amd64.deb ... Unpacking perl-tk (1:804.033-1+b3) ... Selecting previously unselected package perm. Preparing to unpack .../788-perm_0.4.0-2_amd64.deb ... Unpacking perm (0.4.0-2) ... Selecting previously unselected package phylip. Preparing to unpack .../789-phylip_1%3a3.696+dfsg-5_amd64.deb ... Unpacking phylip (1:3.696+dfsg-5) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../790-openmpi-common_2.0.2-2_all.deb ... Unpacking openmpi-common (2.0.2-2) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../791-openmpi-bin_2.0.2-2_amd64.deb ... Unpacking openmpi-bin (2.0.2-2) ... Selecting previously unselected package phyml. Preparing to unpack .../792-phyml_3%3a3.2.0+dfsg-7+b1_amd64.deb ... 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Setting up libdate-manip-perl (6.57-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libmldbm-perl (2.05-2) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libfribidi0:amd64 (0.19.7-1+deb9u1) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up probalign (1.4-5) ... Setting up libncbi-wvdb2 (2.8.1+dfsg-2) ... Setting up libclone-perl (0.38-2+b1) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up libfftw3-single3:amd64 (3.3.5-3) ... Setting up python-sympy-doc (1.0-3) ... Setting up libpotrace0 (1.13-3) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up libx11-protocol-perl (0.56-7) ... Setting up flexbar (2.50-2+b1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libxkbcommon0:amd64 (0.7.1-2~deb9u1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-3) ... Setting up libpcre32-3:amd64 (2:8.39-3) ... Setting up libatinject-jsr330-api-java (1.0+ds1-2) ... Setting up libnet-http-perl (6.12-1) ... Setting up rtax (0.984-5) ... Setting up libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Setting up libmpc3:amd64 (1.0.3-1+b2) ... Setting up libbambamc0 (0.0.50-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libtest-pod-perl (1.51-1) ... Setting up poa (2.0+20060928-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up binutils (2.28-5) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up libtext-format-perl (0.60-1) ... Setting up icu-devtools (57.1-6+deb9u4) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libgraphics-colornames-perl (2.11-7.1) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libjzlib-java (1.1.3-1) ... Setting up libdrm-radeon1:amd64 (2.4.74-1) ... Setting up fonts-gfs-didot (1.1-6) ... Setting up parsinsert (1.04-2) ... Setting up libpcre16-3:amd64 (2:8.39-3) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libjsch-java (0.1.54-1) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libthai-data (0.1.26-1) ... Setting up liblzma-dev:amd64 (5.2.2-1.2+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up javascript-common (11) ... Setting up libbcprov-java (1.56-1+deb9u2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up tree-puzzle-doc (5.2-8) ... Setting up libgflags2v5 (2.1.2-4) ... Setting up libsquizz (0.99c+dfsg-1) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up perm (0.4.0-2) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up fonts-cmu (0.7.0-3) ... Setting up libdrm-nouveau2:amd64 (2.4.74-1) ... Setting up libreadline5:amd64 (5.2+dfsg-3+b1) ... Setting up seqan-apps (2.3.1+dfsg-4) ... Setting up gff2ps (0.98d-5) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up bc (1.06.95-9+b3) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up ttf-adf-universalis (0.20090423-2) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libcommons-codec-java (1.10-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up fonts-dejavu-extra (2.37-1) ... Setting up fonts-freefont-ttf (20120503-6) ... Setting up ruby-minitest (5.9.0-1) ... Setting up libvorbis0a:amd64 (1.3.5-4+deb9u2) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:amd64 (0.13.62-3.2~deb9u1) ... Setting up fonts-sil-gentium (20081126:1.03-1) ... Setting up mustang (3.2.3-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up libsub-name-perl (0.21-1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up manpages-dev (4.10-2) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up hicolor-icon-theme (0.15-1) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libpth20:amd64 (2.0.7-20+b2) ... Setting up cron (3.0pl1-128+deb9u1) ... Adding group `crontab' (GID 151) ... Done. update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libxpp3-java (1.1.4c-2) ... Setting up fonts-sil-gentium-basic (1.1-7) ... Setting up libpostscript-perl (0.06-2) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up libfcgi-perl (0.78-2) ... Setting up minia (1.6906-1+b2) ... Setting up lua-lpeg:amd64 (1.0.0-1) ... Setting up autodock (4.2.6-3+b1) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libset-intspan-perl (1.19-1) ... Setting up libtexluajit2:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up fonts-gfs-olga (1.1-5) ... Setting up libxpp2-java (2.1.10-7) ... Setting up libcdt5 (2.38.0-17) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libitm1:amd64 (6.3.0-18+deb9u1) ... Setting up gff2aplot (2.0-8+b1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libhamcrest-java (1.3-6) ... Setting up libdata-stag-perl (0.14-2) ... 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Setting up libparse-recdescent-perl (1.967013+dfsg-1) ... Setting up bamtools (2.4.1+dfsg-1) ... Setting up libguava-java (19.0-1) ... Setting up libnss3:amd64 (2:3.26.2-1.1+deb9u1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libncbi-vdb2 (2.8.1+dfsg-2) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up glib-networking-services (2.50.0-1+deb9u1) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up preview-latex-style (11.90-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libtype-tiny-xs-perl (0.012-1+b2) ... Setting up libicu-dev (57.1-6+deb9u4) ... Setting up exim4-base (4.89-2+deb9u7) ... exim: DB upgrade, deleting hints-db Setting up libopenexr22:amd64 (2.2.0-11+b1) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up tcpd (7.6.q-26) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libyaml-tiny-perl (1.70-1) ... Setting up mapsembler2 (2.2.3+dfsg-3+b1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libdevel-caller-perl (2.06-1+b4) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libmath-vec-perl (1.01-3) ... Setting up libcommons-dbcp-java (1.4-5) ... Setting up libterm-readkey-perl (2.37-1) ... Setting up libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Setting up libstatistics-basic-perl (1.6611-1) ... Setting up gcc-6 (6.3.0-18+deb9u1) ... Setting up smalt (0.7.6-6) ... Setting up libio-all-perl (0.86-2) ... Setting up libjson-glib-1.0-0:amd64 (1.2.6-1) ... Setting up fsa (1.15.9+dfsg-3) ... 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Setting up libsnappy-java (1.1.2.6-1) ... Setting up wise (2.4.1-19) ... Setting up guile-2.0-libs:amd64 (2.0.13+1-4) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up tcl8.6 (8.6.6+dfsg-1+b1) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up jellyfish (2.2.6-1+b1) ... Setting up libpython2.7:amd64 (2.7.13-2+deb9u3) ... Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up bioperl (1.7.1-2) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libdconf1:amd64 (0.26.0-2+b1) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up rubygems-integration (1.11) ... Setting up libwebpdemux2:amd64 (0.5.2-1) ... Setting up libexpat1-dev:amd64 (2.2.0-2+deb9u3) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libpython2.7-dev:amd64 (2.7.13-2+deb9u3) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libcolord2:amd64 (1.3.3-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libpng-dev:amd64 (1.6.28-1+deb9u1) ... Setting up dbus (1.10.32-0+deb9u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libvorbisenc2:amd64 (1.3.5-4+deb9u2) ... Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up libdbd-mysql-perl (4.041-2) ... Setting up altree (1.3.1-4+b2) ... Setting up libfile-mimeinfo-perl (0.27-1) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up python2.7-dev (2.7.13-2+deb9u3) ... Setting up libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libwayland-cursor0:amd64 (1.12.0-1+deb9u1) ... Setting up lmodern (2.004.5-3) ... Setting up python (2.7.13-2) ... Setting up libqt4-xml:amd64 (4:4.8.7+dfsg-11) ... Setting up libole-storage-lite-perl (0.19-1+deb9u1) ... Setting up libpod-coverage-perl (0.23-1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up python-gmpy (1.17-3) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python-pyparsing (2.1.10+dfsg1-1) ... Setting up liblist-moreutils-perl (0.416-1+b1) ... Setting up libhtml-tableextract-perl (2.13-1) ... Setting up ssake (3.8.4-1) ... Setting up python3.5 (3.5.3-1+deb9u1) ... Setting up libdevel-lexalias-perl (0.05-1+b4) ... Setting up libpython3-stdlib:amd64 (3.5.3-1) ... Setting up libibverbs1 (1.2.1-2) ... Setting up libxcb-present0:amd64 (1.12-1) ... Setting up libpython-dev:amd64 (2.7.13-2) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libstatistics-descriptive-perl (3.0612-1) ... Setting up libxcb-dri2-0:amd64 (1.12-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libxcb-dri3-0:amd64 (1.12-1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libxcb-glx0:amd64 (1.12-1) ... Setting up gfortran-6 (6.3.0-18+deb9u1) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up python-yaml (3.12-1) ... Setting up sigma-align (1.1.3-4+b1) ... Setting up mariadb-client-10.1 (10.1.45-0+deb9u1) ... Setting up libxcb-xfixes0:amd64 (1.12-1) ... Setting up parallel (20161222-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up python-simplegeneric (0.8.1-1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libmath-spline-perl (0.02-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up pynast (1.2.2-2) ... Setting up bowtie (1.1.2-6) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up discosnp (1.2.6-1+b2) ... Setting up libharfbuzz-icu0:amd64 (1.4.2-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up dconf-service (0.26.0-2+b1) ... Setting up python-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Setting up python-reportlab (3.3.0-2+deb9u1) ... Setting up libtype-tiny-perl (1.000005-1) ... Setting up libeigen3-dev (3.3.2-1) ... Setting up python-dev (2.7.13-2) ... Setting up libgromacs2 (2016.1-2) ... Setting up python-wxversion (3.0.2.0+dfsg-4) ... Setting up libpoppler64:amd64 (0.48.0-2+deb9u2) ... Setting up python-tz (2016.7-0.3) ... Setting up gnupg (2.1.18-8~deb9u4) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Setting up tcl (8.6.0+9) ... Setting up libcommons-logging-java (1.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up librdmacm1 (1.1.0-2) ... Setting up gcc (4:6.3.0-4) ... Setting up libkdf5-2 (2.8.1+dfsg-2) ... Setting up python-pkg-resources (33.1.1-1) ... Setting up idba (1.1.3-1) ... Setting up sra-toolkit (2.8.1-2+dfsg-2) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up python-numpy (1:1.12.1-3) ... Setting up cython (0.25.2-1) ... Setting up bowtie2 (2.3.0-2) ... Setting up libcgi-fast-perl (1:2.12-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libparams-validate-perl (1.26-1) ... Setting up libxcb-sync1:amd64 (1.12-1) ... Setting up cain-solvers (1.10+dfsg-2) ... Setting up kissplice (2.4.0-p1-1) ... Setting up python-ipython-genutils (0.1.0-2) ... Setting up python-gobject-2 (2.28.6-13) ... Setting up libsndfile1:amd64 (1.0.27-3) ... Setting up python-six (1.10.0-3) ... Setting up python-wcwidth (0.1.7+dfsg1-1) ... Setting up python-pygments (2.2.0+dfsg-1) ... Setting up libcassie1v5 (1.0.5-1+b1) ... Setting up python-ptyprocess (0.5.1-1) ... Setting up libjpeg-dev (1:1.5.1-2) ... Setting up libdate-calc-perl (6.4-1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up conservation-code (20110309.0-5) ... Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up python-enum34 (1.1.6-1) ... Setting up libace-perl (1.92-4+b1) ... Setting up bioperl-run (1.7.1-3) ... Setting up python-renderpm:amd64 (3.3.0-2+deb9u1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libcommons-jexl2-java (2.1.1-3) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up macs (2.1.1.20160309-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxcb-shape0:amd64 (1.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libmoo-perl (2.002005-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up g++ (4:6.3.0-4) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libavahi-client3:amd64 (0.6.32-2) ... Setting up last-align (830-1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up python-decorator (4.0.11-1) ... Setting up libgts-bin (0.7.6+darcs121130-4) ... Setting up exim4-daemon-light (4.89-2+deb9u7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Initializing GnuTLS DH parameter file Setting up tophat (2.1.1+dfsg-2+b2) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python-subprocess32 (3.2.7-2) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up python-pathlib2 (2.2.0+really2.1.0-1) ... Setting up python-traitlets (4.3.1-1) ... Setting up libxml-sax-writer-perl (0.56-1) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up dconf-gsettings-backend:amd64 (0.26.0-2+b1) ... Setting up liblist-someutils-perl (0.53-1) ... Setting up python-pil:amd64 (4.0.0-4+deb9u1) ... Setting up python-mpmath (0.19-3) ... Setting up libcommons-httpclient-java (3.1-12) ... Setting up libqtdbus4:amd64 (4:4.8.7+dfsg-11) ... Setting up isympy-common (1.0-3) ... Setting up default-mysql-client (1.0.2) ... Setting up libaudio2:amd64 (1.9.4-5+b1) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up giira (0.0.20140625-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up aevol (4.4-1+b4) ... Setting up libaprutil1-ldap:amd64 (1.5.4-3) ... Setting up libegl1-mesa:amd64 (13.0.6-1+b2) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up gfortran (4:6.3.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libmailtools-perl (2.18-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libhtml-format-perl (2.12-1) ... Setting up python-networkx (1.11-2) ... Setting up python-biopython (1.68+dfsg-3) ... Setting up python-prompt-toolkit (1.0.9-1) ... Setting up python-chardet (2.3.0-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up python-scipy (0.18.1-2) ... Setting up gsettings-desktop-schemas (3.22.0-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libfabric1 (1.4.0-1) ... Setting up libcommons-discovery-java (0.5-3) ... Setting up libblas-dev (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libgtk-3-common (3.22.11-1) ... Setting up build-essential (12.3) ... Setting up python-htseq (0.6.1p1-4) ... Setting up libatspi2.0-0:amd64 (2.22.0-6+deb9u1) ... Setting up gromacs (2016.1-2) ... Setting up libncbi6:amd64 (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Setting up libarray-compare-perl (3.0.0-1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libdate-calc-xs-perl (6.4-1+b2) ... Setting up apache2-bin (2.4.25-3+deb9u9) ... Setting up libgd3:amd64 (2.2.4-2+deb9u5) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up python-pexpect (4.2.1-1) ... Setting up libgd-perl (2.53-3) ... Setting up python-cycler (0.10.0-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up qdbus (4:4.8.7+dfsg-11) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up xauth (1:1.0.9-1+b2) ... Setting up libhtsjdk-java (2.8.1+dfsg-1) ... Setting up python-dateutil (2.5.3-2) ... Setting up python-imaging (4.0.0-4+deb9u1) ... Setting up fonts-sil-gentiumplus-compact (5.000-2) ... Setting up cassiopee (1.0.5-1+b1) ... Setting up libxml-simple-perl (2.22-1) ... Setting up gtk-update-icon-cache (3.22.11-1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Setting up python-pickleshare (0.7.4-1) ... Setting up libpq5:amd64 (9.6.17-0+deb9u1) ... Setting up libelk0 (3.99.8-4.1+b1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up libxml-libxslt-perl (1.95-1+b1) ... Setting up exim4 (4.89-2+deb9u7) ... Setting up glib-networking:amd64 (2.50.0-1+deb9u1) ... Setting up perl-tk (1:804.033-1+b3) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up emboss-lib (6.6.0+dfsg-6) ... Setting up libwayland-egl1-mesa:amd64 (13.0.6-1+b2) ... Setting up libatk-bridge2.0-0:amd64 (2.22.0-2) ... Setting up libhtml-form-perl (6.03-1) ... Setting up liblist-allutils-perl (0.12-1) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up embassy-domalign (0.1.660-1) ... Setting up embassy-domainatrix (0.1.660-1) ... Setting up libopenmpi2:amd64 (2.0.2-2) ... Setting up libaxis-java (1.4-25) ... Setting up fonts-sil-gentiumplus (5.000-1) ... Setting up python-sympy (1.0-3) ... Setting up libpicard-java (2.8.1+dfsg-1) ... Setting up libgd-text-perl (0.86-9) ... Setting up pdb2pqr (2.1.1+dfsg-2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libqt4-dbus:amd64 (4:4.8.7+dfsg-11) ... Setting up beignet-opencl-icd:amd64 (1.3.0-4) ... Setting up embassy-domsearch (1:0.1.660-1) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-10.6) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libcups2:amd64 (2.2.1-8+deb9u6) ... Setting up libg20 (0.72-6) ... Setting up libmime-tools-perl (5.508-1) ... Setting up circos (0.69.4+dfsg-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up liblapack-dev (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libgsasl7 (1.8.0-8+b2) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libmailutils5:amd64 (1:3.1.1-1) ... Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libnotify4:amd64 (0.7.7-2) ... Setting up readseq (1-11+b1) ... Setting up libboost-mpi1.62.0 (1.62.0+dfsg-4) ... Setting up abyss (2.0.2-2) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libqtgui4:amd64 (4:4.8.7+dfsg-11) ... Setting up libjets3t-java (0.8.1+dfsg-3) ... Setting up qt-at-spi:amd64 (0.4.0-5) ... Setting up libmagickcore-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up prime-phylo (1.0.11-4+b3) ... Setting up ncbi-tools-bin (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Setting up clonalframe (1.2-5) ... Setting up python-ipython (5.1.0-3) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up ffindex (0.9.9.7-3) ... Setting up blast2 (1:2.6.0-1) ... Setting up libcairo-gobject2:amd64 (1.14.8-1) ... Setting up libanfo0 (0.98-5) ... Setting up libsoup2.4-1:amd64 (2.56.0-2+deb9u2) ... Setting up ipython (5.1.0-3) ... Setting up rnahybrid (2.1.2-1+b1) ... Setting up libsoup-gnome2.4-1:amd64 (2.56.0-2+deb9u2) ... Setting up libhmsbeagle1v5 (2.1.2+20160831-5) ... Setting up zalign (0.9.1-2+b3) ... Setting up libdbd-pg-perl (3.5.3-1+b2) ... Setting up xterm (327-2) ... update-alternatives: using /usr/bin/xterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode update-alternatives: using /usr/bin/lxterm to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up mailutils (1:3.1.1-1) ... update-alternatives: using /usr/bin/frm.mailutils to provide /usr/bin/frm (frm) in auto mode update-alternatives: using /usr/bin/from.mailutils to provide /usr/bin/from (from) in auto mode update-alternatives: using /usr/bin/messages.mailutils to provide /usr/bin/messages (messages) in auto mode update-alternatives: using /usr/bin/movemail.mailutils to provide /usr/bin/movemail (movemail) in auto mode update-alternatives: using /usr/bin/readmsg.mailutils to provide /usr/bin/readmsg (readmsg) in auto mode update-alternatives: using /usr/bin/dotlock.mailutils to provide /usr/bin/dotlock (dotlock) in auto mode update-alternatives: using /usr/bin/mail.mailutils to provide /usr/bin/mailx (mailx) in auto mode Setting up openmpi-bin (2.0.2-2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libcupsimage2:amd64 (2.2.1-8+deb9u6) ... Setting up ampliconnoise (1.29-6) ... Setting up circos-tools (0.22-1) ... Setting up libgd-graph-perl (1.48-2) ... Setting up libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-3) ... Setting up emboss (6.6.0+dfsg-6) ... Setting up libmagickwand-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up python-cairo (1.8.8-2.2) ... Setting up x11-xserver-utils (7.7+7+b1) ... Setting up phyml (3:3.2.0+dfsg-7+b1) ... Setting up tabix (1.3.2-2) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... Setting up isympy (1.0-3) ... Setting up librest-0.7-0:amd64 (0.8.0-2) ... Setting up libgs9:amd64 (9.26a~dfsg-0+deb9u6) ... Setting up fastx-toolkit (0.0.14-3) ... Setting up blt (2.5.3+dfsg-3) ... Setting up mpi-default-bin (1.8) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up libxerces-c3.1:amd64 (3.1.4+debian-2+deb9u1) ... Setting up libstaden-read11:amd64 (1.14.8-2) ... Setting up anfo (0.98-5) ... Setting up hyphy-mpi (2.2.7+dfsg-1+b2) ... Setting up tk8.6 (8.6.6-1+b1) ... Setting up hhsuite (3.0~beta2+dfsg-3) ... Setting up mrbayes (3.2.6+dfsg-1+b4) ... Setting up python-pysam (0.10.0+ds-2) ... Setting up at-spi2-core (2.22.0-6+deb9u1) ... Setting up x11-utils (7.7+3+b1) ... Setting up imagemagick-6.q16 (8:6.9.7.4+dfsg-11+deb9u8) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up freecontact (1.0.21-5) ... Setting up ghostscript (9.26a~dfsg-0+deb9u6) ... Setting up fitgcp (0.0.20150429-1) ... Setting up texlive-binaries (2016.20160513.41080.dfsg-2+deb9u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libpulse0:amd64 (10.0-1+deb9u1) ... Setting up staden-io-lib-utils (1.14.8-2) ... Setting up libcupsfilters1:amd64 (1.11.6-3+deb9u1) ... Setting up genometools-common (1.5.9+ds-4) ... Setting up tk (8.6.0+9) ... Setting up libmagickcore-6.q16-3-extra:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up imagemagick (8:6.9.7.4+dfsg-11+deb9u8) ... Setting up ps2eps (1.68+binaryfree-2) ... Setting up samtools (1.3.1-3) ... Setting up python-tk (2.7.13-1) ... Setting up libatk-wrapper-java (0.33.3-13+deb9u1) ... Setting up python-mpi4py (2.0.0-2.1+deb9u1) ... Setting up libgvc6 (2.38.0-17) ... Setting up librsvg2-2:amd64 (2.40.16-1+b1) ... Setting up raster3d (3.0-3-2+b1) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Setting up genometools (1.5.9+ds-4) ... Setting up r-cran-nnet (7.3-12-1) ... Setting up r-base-dev (3.3.3-1) ... Setting up librsvg2-common:amd64 (2.40.16-1+b1) ... Setting up r-cran-qtl (1.40-8-1) ... Setting up r-cran-spatial (7.3-11-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-multicore (0.2-1) ... Setting up r-bioc-limma (3.30.8+dfsg-1) ... Setting up r-bioc-edger (3.14.0+dfsg-1) ... Setting up r-cran-cluster (2.0.5-1) ... Setting up r-cran-g.data (2.4-1) ... Setting up adwaita-icon-theme (3.22.0-1+deb9u1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up graphviz (2.38.0-17) ... Setting up r-cran-pvclust (2.0-0-1) ... Setting up r-cran-boot (1.3-18-2) ... Setting up libgtk2.0-0:amd64 (2.24.31-2) ... Setting up libgail18:amd64 (2.24.31-2) ... Setting up r-cran-codetools (0.2-15-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-nlme (3.1.129-1) ... Setting up python-gtk2 (2.24.0-5.1) ... Setting up r-cran-foreign (0.8.67-1) ... Setting up r-cran-class (7.3-14-1) ... Setting up python-matplotlib (2.0.0+dfsg1-2) ... Setting up python-pyglet (1.1.4.dfsg-3) ... Setting up r-cran-kernsmooth (2.23-15-2) ... Setting up python-cogent (1.9-9) ... Setting up libwxgtk3.0-0v5:amd64 (3.0.2+dfsg-4) ... Setting up libgail-common:amd64 (2.24.31-2) ... Setting up r-other-mott-happy.hbrem (2.4-1) ... Setting up gnome-icon-theme (3.12.0-2) ... update-alternatives: using /usr/share/icons/gnome/scalable/places/debian-swirl.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode Setting up libgtk-3-0:amd64 (3.22.11-1) ... Setting up arden (1.0-3) ... Setting up libglade2-0:amd64 (1:2.6.4-2) ... Setting up libgtk-3-bin (3.22.11-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.33.3-13+deb9u1) ... Setting up python-glade2 (2.24.0-5.1) ... Setting up r-bioc-hilbertvis (1.32.0-1) ... Setting up notification-daemon (3.20.0-1+b1) ... Setting up gasic (0.0.r19-1) ... Setting up python-pygraphviz (1.4~rc1-1) ... Setting up libgtk2.0-bin (2.24.31-2) ... Setting up r-cran-matrix (1.2-7.1-1) ... Setting up python-wxgtk3.0 (3.0.2.0+dfsg-4) ... update-alternatives: using /usr/lib/wx/python/wx3.0.pth to provide /usr/lib/wx/python/wx.pth (wx.pth) in auto mode Setting up r-cran-mgcv (1.8-16-1) ... Setting up r-cran-survival (2.40-1-1) ... Setting up cain (1.10+dfsg-2) ... Setting up cain-examples (1.10+dfsg-2) ... Setting up r-cran-vegan (2.4-2-1) ... Setting up r-cran-rpart (4.1-10-2) ... Setting up r-recommended (3.3.3-1) ... Processing triggers for tex-common (6.06) ... texlive-base is not ready, delaying updmap-sys call update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil --all call Setting up dvipng (1.14-2+b3) ... Setting up texlive-base (2016.20170123-5) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-fonts-recommended-doc (2016.20170123-5) ... Setting up texlive-fonts-recommended (2016.20170123-5) ... Setting up texlive-generic-recommended (2016.20170123-5) ... Setting up texlive-latex-base (2016.20170123-5) ... Setting up texlive-latex-base-doc (2016.20170123-5) ... Setting up texlive-fonts-extra-doc (2016.20170123-5) ... Setting up texlive-fonts-extra (2016.20170123-5) ... Setting up texlive-pictures-doc (2016.20170123-5) ... Setting up texlive-pstricks-doc (2016.20170123-5) ... Setting up texlive-font-utils (2016.20170123-5) ... Setting up texlive-latex-extra-doc (2016.20170123-5) ... Setting up texlive-generic-extra (2016.20170123-5) ... Setting up texlive-latex-recommended-doc (2016.20170123-5) ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-recommended (2016.20170123-5) ... Setting up texlive-extra-utils (2016.20170123-5) ... Setting up texlive-pictures (2016.20170123-5) ... Setting up tipa (2:1.3-20) ... Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done. Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done. update-fmtutil has updated the following file(s): /var/lib/texmf/fmtutil.cnf-DEBIAN /var/lib/texmf/fmtutil.cnf-TEXLIVEDIST If you want to activate the changes in the above file(s), you should run fmtutil-sys or fmtutil. Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.6.96) ... Setting up med-config (3.0.1) ... Adding group `med' (GID 154) ... Done. Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-pstricks (2016.20170123-5) ... Setting up texlive-latex-extra (2016.20170123-5) ... Setting up prosper (1.00.4+cvs.2007.05.01-4.1) ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up tasksel-data (3.39) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u8) ... Setting up tasksel (3.39) ... Setting up libwww-perl (6.15-1) ... Setting up openjdk-8-jre-headless:amd64 (8u252-b09-1~deb9u1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20170929~deb9u3) ... Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up med-tasks (3.0.1) ... Setting up med-cloud (3.0.1) ... Setting up libapache2-mod-perl2 (2.0.10-2+deb9u1) ... Setting up python3 (3.5.3-1) ... Setting up python3-numpy (1:1.12.1-3) ... Setting up ruby2.3 (2.3.3-1+deb9u8) ... Setting up openjdk-8-jre:amd64 (8u252-b09-1~deb9u1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up ant (1.9.9-1+deb9u1) ... Setting up junit4 (4.12-4) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libapache2-reload-perl (0.13-1) ... Setting up python3-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Setting up ruby (1:2.3.3) ... Setting up dh-python (2.20170125) ... Setting up picard-tools (2.8.1+dfsg-1) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python3-renderpm:amd64 (3.3.0-2+deb9u1) ... Setting up default-jre-headless (2:1.8-58+deb9u1) ... Setting up libapache-dbi-perl (1.12-1) ... Setting up python3-pil:amd64 (4.0.0-4+deb9u1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up fastqc (0.11.5+dfsg-6) ... Setting up libsoap-lite-perl (1.20-1) ... Setting up default-jre (2:1.8-58+deb9u1) ... Setting up rake (10.5.0-2+deb9u1) ... Setting up ant-optional (1.9.9-1+deb9u1) ... Setting up libxml-xpath-perl (1.40-1) ... Setting up neobio (0.0.20030929-2) ... Setting up libnet-dbus-perl (1.1.0-4+b1) ... Setting up libxml-perl (0.08-2) ... Setting up libmsv-java (2009.1+dfsg1-5) ... Setting up python3-reportlab (3.3.0-2+deb9u1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up ant-contrib (1.0~b3+svn177-9) ... Setting up libxml-dom-perl (1.44-2) ... Setting up python3-biopython (1.68+dfsg-3) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libdom4j-java (1.6.1+dfsg.3-2+deb9u1) ... Setting up libbytecode-java (0.92.svn.20090106-2) ... Setting up mipe (1.1-5) ... Setting up libbiojava1.7-java (1:1.7.1-5) ... Setting up libsaxonhe-java (9.5.1.1+dfsg-2) ... Setting up libxml-dom-xpath-perl (0.14-2) ... Setting up biomaj (1.2.3-11) ... Setting up libbiojava-java (1:1.7.1-5) ... Setting up alien-hunter (1.7-5) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Processing triggers for menu (2.1.47+b1) ... 8m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'install', 'med-cloud'] 8m34.0s INFO: Running scripts post_install 8m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_install_exceptions'] 8m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_install_exceptions'] 8m34.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 8m39.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 8m39.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp1rznhz_y to buster 8m39.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 8m39.7s INFO: Running scripts pre_distupgrade 8m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 8m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 8m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_exceptions'] 8m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_exceptions'] 8m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 8m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 8m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 8m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 8m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 8m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 8m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'update'] 8m43.7s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 2s (4741 kB/s) Reading package lists... 8m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'update'] 8m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'upgrade'] 11m25.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: exim4 fonts-texgyre gnupg-l10n isympy isympy-common tcpd Use 'sudo apt autoremove' to remove them. The following packages have been kept back: abyss aevol altree amap-align ampliconnoise anfo apache2-bin apt autodock-vina bamtools bash bc bedtools beignet-opencl-icd binutils bioperl biosquid bowtie build-essential ca-certificates cassiopee clonalframe clustalo coreutils cpp dash dconf-gsettings-backend dconf-service default-jre default-jre-headless default-mysql-client dirmngr discosnp disulfinder dnaclust dpkg dssp e2fslibs e2fsprogs emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light fastqc ffindex flexbar fonts-lmodern fonts-noto-hinted fonts-roboto-hinted freecontact g++ gawk gcc genometools gfortran ghostscript glib-networking glib-networking-common glib-networking-services gnupg gnupg-agent gpgv graphviz gromacs gromacs-data gtk-update-icon-cache guile-2.0-libs hhsuite hhsuite-data hmmer hyphy-mpi icu-devtools imagemagick-6.q16 infernal kissplice libace-perl libalgorithm-diff-xs-perl libamd2 libanfo0 libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg5.0 libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatlas3-base libatomic1 libbio-perl-perl libbit-vector-perl libblas-dev libblas3 libblkid1 libbsd-resource-perl libbsd0 libc-bin libc-dev-bin libc6 libc6-dev libcassie1v5 libcc1-0 libcilkrts5 libclass-xsaccessor-perl libclone-perl libcolamd2 libcomerr2 libconvert-binary-c-perl libcups2 libcupsimage2 libcurl3-gnutls libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdconf1 libdevel-caller-perl libdevel-lexalias-perl libdjvulibre21 libdrm-amdgpu1 libdrm2 libedit2 libegl1-mesa libexpat1 libexpat1-dev libfabric1 libfcgi-perl libfdisk1 libffindex0 libfile-fcntllock-perl libfreecontact0v5 libfuse2 libgbm1 libgcc1 libgd-perl libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls30 libgomp1 libgoogle-glog0v5 libgpg-error0 libgs9 libgs9-common libgsasl7 libgssapi-krb5-2 libgtk-3-0 libgtk-3-bin libgvc6 libharfbuzz-icu0 libhmsbeagle1v5 libhtml-parser-perl libhtsjdk-java libibverbs1 libicu-dev libidn2-0 libio-pty-perl libio-socket-ssl-perl libipc-sharelite-perl libitm1 libk5crypto3 libkdf5-2 libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 liblist-moreutils-perl liblocale-gettext-perl liblsan0 libmail-java libmailutils5 libmath-random-mt-perl libmath-tamuanova-perl libmbedtls-dev libmbedx509-0 libmoo-perl libmount1 libmpc3 libmpx2 libncbi-vdb2 libncbi-wvdb2 libncbi6 libncurses5 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-ssleay-perl libngs-java libngs-sdk-dev libossp-uuid-perl libp11-kit0 libpadwalker-perl libpam-modules libpam-modules-bin libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparams-validate-perl libperlio-gzip-perl libpicard-java libpopt0 libpq5 libpsl5 libptexenc1 libpulse0 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libquadmath0 librdmacm1 libreadline-dev libreadline5 libreadline7 libsaxonhe-java libscalar-list-utils-perl libservlet3.1-java libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++6 libsub-name-perl libsystemd0 libtamuanova-0.2 libtbb2 libterm-readkey-perl libtexlua52 libtexluajit2 libtext-iconv-perl libtiff5 libtinfo-dev libtinfo5 libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libudev1 libunicode-map-perl libuuid1 libwayland-egl1-mesa libwww-perl libwxbase3.0-0v5 libwxgtk3.0-0v5 libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libxshmfence1 libyaml-libyaml-perl lmodern login loki lynx mailutils mailutils-common make mapsembler2 maq med-cloud med-config med-tasks mira-assembler mothur mount muscle ncbi-blast+ ncbi-data ncurses-base ncurses-bin openmpi-bin openmpi-common openssl perl perl-base perl-doc perl-tk phyml picard-tools pinentry-curses prank prime-phylo probalign probcons procps proda prosper psmisc python python-biopython python-biopython-doc python-cogent python-dev python-glade2 python-gtk2 python-matplotlib python-minimal python-mpi4py python-networkx python-numpy python-pathlib2 python-pil python-pyglet python-pysam python-scipy python-wxgtk3.0 python2.7 python2.7-dev python2.7-minimal python3 python3-biopython python3-minimal python3-numpy python3-pil python3-renderpm python3-reportlab python3-reportlab-accel r-base-core r-base-dev r-bioc-hilbertvis r-bioc-limma r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-g.data r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-multicore r-cran-nlme r-cran-nnet r-cran-permute r-cran-pvclust r-cran-qtl r-cran-rpart r-cran-spatial r-cran-survival r-cran-vegan r-other-mott-happy.hbrem r-recommended raster3d rename ruby samtools seqan-apps sra-toolkit staden-io-lib-utils sysstat t-coffee tabix tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tm-align tophat ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis util-linux x11-utils x11-xserver-utils xterm zalign The following packages will be upgraded: acedb-other adduser adwaita-icon-theme alien-hunter ant ant-contrib ant-optional aragorn arden at-spi2-core autodock autogrid autotools-dev base-files base-passwd bioperl-run blast2 blends-common blt bowtie2 boxshade bsdutils bwa bzip2 bzip2-doc ca-certificates-java cain cain-examples cain-solvers cd-hit cdbfasta cdbs circos circos-tools clearcut clustalw concavity conservation-code cron cython datamash dbus debconf debian-archive-keyring debianutils dh-python dialign dialign-tx dialign-tx-data diffutils disulfinder-data dmidecode dpkg-dev dvipng embassy-domainatrix embassy-domalign embassy-domsearch exonerate fakeroot fastdnaml fastlink fasttree fastx-toolkit file findutils fitgcp fontconfig fontconfig-config fonts-circos-symbols fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lyx fonts-noto-mono fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-texgyre fsa gasic genometools-common gff2aplot gff2ps giira glam2 glpk-utils gnome-icon-theme gnupg-l10n grep grinder gsettings-desktop-schemas gsfonts gzip hicolor-icon-theme hostname hyphy-common idba imagemagick imagemagick-6-common init-system-helpers ipython isympy-common java-common java-wrappers jellyfish junit4 kalign krb5-locales laptop-detect last-align libacl1 libaec0 libaio1 libalgorithm-diff-perl libann0 libapache-dbi-perl libapache-pom-java libapache2-reload-perl libapparmor1 libapr1 libarray-compare-perl libart-2.0-2 libasound2 libasound2-data libassuan0 libatinject-jsr330-api-java libatk-wrapper-java libatk-wrapper-java-jni libatspi2.0-0 libattr1 libaudio2 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libaxis-java libbambamc0 libbcprov-java libbio-asn1-entrezgene-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbz2-1.0 libbz2-dev libcairo-gobject2 libcairo2 libcap-ng0 libcap2 libcarp-always-perl libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-inspector-perl libcolord2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-dbcp-java libcommons-httpclient-java libcommons-jexl2-java libcommons-logging-java libcommons-math3-java libcommons-net-java libcommons-parent-java libconfig-inifiles-perl libcroco3 libcrypt-rc4-perl libcupsfilters1 libdate-manip-perl libdatrie1 libdb5.3 libdbus-1-3 libdebconfclient0 libdevel-symdump-perl libdivsufsort3 libdjvulibre-text libdom4j-java libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libeigen3-dev libelf1 libelk0 libepoxy0 liberror-perl libexporter-tiny-perl libfakeroot libffi6 libfftw3-double3 libfftw3-single3 libfile-basedir-perl libfile-homedir-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-which-perl libflac8 libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libg20 libgail-common libgail18 libgc1c2 libgcrypt20 libgd-graph-perl libgd3 libgif7 libglade2-0 libglib2.0-data libglpk-java libglpk40 libglu1-mesa libgmp10 libgpm2 libgraph-perl libgraphite2-3 libgtextutils0v5 libgtk-3-common libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgvpr2 libhamcrest-java libharfbuzz0b libhogweed4 libhsqldb-java libhtml-tableextract-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libidn11 libijs-0.35 libio-all-perl libio-stringy-perl libipc-run-perl libipc-system-simple-perl libisorelax-java libjaxen-java libjbig2dec0 libjbzip2-java libjdom1-java libjellyfish-2.0-2 libjets3t-java libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-underscore libjsch-java libjson-glib-1.0-0 libjson-glib-1.0-common libjsr305-java libjzlib-java libkeyutils1 liblcms2-2 libldap-common liblist-allutils-perl liblist-someutils-perl liblist-utilsby-perl liblog4j1.2-java liblqr-1-0 libltdl7 liblwp-protocol-https-perl liblz4-1 liblzma-dev liblzma5 liblzo2-2 libmagic-mgc libmagic1 libmath-derivative-perl libmath-spline-perl libmath-vecstat-perl libmime-tools-perl libmodule-runtime-perl libmpdec2 libmsv-java libnet-http-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnotify4 libnpth0 libnspr4 libnss3 libntlm0 libnuma1 libogg0 libole-storage-lite-perl libopenjp2-7 liboro-java libossp-uuid16 libpam-runtime libpam0g libpaper-utils libpaper1 libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre16-3 libpcre3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libperl4-corelibs-perl libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpostscript-perl libpotrace0 libproxy1v5 libpsm-infinipath1 libqt4-dbus libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libregexp-common-perl libregexp-java librest-0.7-0 librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsigsegv2 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsndfile1 libsoap-lite-perl libsort-naturally-perl libsoup-gnome2.4-1 libsoup2.4-1 libspiffy-perl libsprng2 libsquizz libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsvg-graph-perl libsvg-perl libsz2 libtask-weaken-perl libtasn1-6 libtcl8.6 libtest-pod-perl libtext-format-perl libthai-data libthai0 libtimedate-perl libtk8.6 libtree-dagnode-perl libtry-tiny-perl libunwind8 liburi-perl libvorbis0a libvorbisenc2 libwayland-client0 libwayland-cursor0 libwayland-server0 libwebp6 libwebpdemux2 libwmf0.2-7 libwrap0 libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcursor1 libxdamage1 libxdot4 libxerces2-java libxft2 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-namespacesupport-perl libxml-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxml-xpathengine-perl libxmlrpc-lite-perl libxmu6 libxmuu1 libxpp2-java libxpp3-java libxslt1.1 libxss1 libxt6 libxz-java libyaml-0-2 libyaml-perl libyaml-tiny-perl libzzip-0-13 linux-libc-dev lsb-base lua-lpeg lua-md5 lynx-common macs mafft manpages manpages-dev mariadb-common melting mime-support minia mipe mira-rfam-12s-rrna mlv-smile mpi-default-bin mrbayes multiarch-support mummer mustang mysql-common ncbi-blast+-legacy ncbi-epcr ncbi-tools-bin ncoils neobio netbase notification-daemon ocl-icd-libopencl1 paraclu parallel parsinsert passwd patch pdb2pqr perm phylip phyutility pkg-config plink poa poppler-data preview-latex-style primer3 probabel prodigal publicsuffix pynast python-backports-shutil-get-terminal-size python-cairo python-chardet python-dateutil python-decorator python-enum34 python-gmpy python-gobject-2 python-htseq python-ipython python-ipython-genutils python-matplotlib-data python-mpmath python-pexpect python-pickleshare python-pkg-resources python-prompt-toolkit python-ptyprocess python-pygments python-pygraphviz python-pyparsing python-renderpm python-reportlab python-reportlab-accel python-simplegeneric python-six python-subprocess32 python-sympy python-sympy-doc python-tk python-traitlets python-tz python-wcwidth python-wxversion python-yaml qdbus qt-at-spi qtchooser qtcore4-l10n r-doc-html rake raxml readline-common readseq rnahybrid rtax ruby-did-you-mean ruby-minitest ruby-power-assert ruby-test-unit rubygems-integration sed sensible-utils shared-mime-info sibsim4 sigma-align sim4 smalt snap soapdenovo soapdenovo2 squizz ssake sysvinit-utils t1utils tar tasksel tasksel-data tcl tcl8.6 tcpd tex-common tk tk8.6 tk8.6-blt2.5 tree-puzzle tree-puzzle-doc tzdata ucf unzip vcftools velvet wise wise-data xauth xdg-user-dirs xdg-utils xkb-data xml-core xz-utils zlib1g zlib1g-dev 582 upgraded, 0 newly installed, 0 to remove and 400 not upgraded. Need to get 275 MB of archives. After this operation, 42.6 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:3 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:4 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:5 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:6 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:7 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:8 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:9 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:10 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:12 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:13 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:14 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:15 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:26 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get:31 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:33 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:34 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:35 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:37 http://deb.debian.org/debian buster/main amd64 cron amd64 3.0pl1-134+deb10u1 [99.0 kB] Get:38 http://deb.debian.org/debian buster/main amd64 tasksel-data all 3.53 [17.9 kB] Get:39 http://deb.debian.org/debian buster/main amd64 tasksel all 3.53 [95.0 kB] Get:40 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:41 http://deb.debian.org/debian buster/main amd64 mira-rfam-12s-rrna all 4.9.6-4 [10.4 MB] Get:42 http://deb.debian.org/debian buster/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:43 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:44 http://deb.debian.org/debian buster/main amd64 tex-common all 6.11 [53.1 kB] Get:45 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:50 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:51 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1+deb10u1 [210 kB] Get:52 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:53 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u1 [210 kB] Get:54 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:55 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:56 http://deb.debian.org/debian buster/main amd64 dmidecode amd64 3.2-1 [62.2 kB] Get:57 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:58 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:59 http://deb.debian.org/debian buster/main amd64 dbus amd64 1.12.20-0+deb10u1 [236 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libapparmor1 amd64 2.13.2-10 [94.7 kB] Get:62 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:65 http://deb.debian.org/debian buster/main amd64 krb5-locales all 1.17-3+deb10u4 [95.6 kB] Get:66 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:67 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:68 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:69 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:70 http://deb.debian.org/debian buster/main amd64 acedb-other amd64 4.9.39+dfsg.02-4 [17.9 kB] Get:71 http://deb.debian.org/debian buster/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libpng-tools amd64 1.6.36-6 [140 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libpng-dev amd64 1.6.36-6 [300 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:76 http://deb.debian.org/debian buster/main amd64 fonts-texgyre all 20180621-3 [10.2 MB] Get:77 http://deb.debian.org/debian buster/main amd64 fonts-liberation all 1:1.07.4-9 [827 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:79 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:82 http://deb.debian.org/debian buster/main amd64 xkb-data all 2.26-2 [681 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:90 http://deb.debian.org/debian buster/main amd64 librsvg2-common amd64 2.44.10-2.1+deb10u3 [23.6 kB] Get:91 http://deb.debian.org/debian buster/main amd64 librsvg2-2 amd64 2.44.10-2.1+deb10u3 [1258 kB] Get:92 http://deb.debian.org/debian buster/main amd64 adwaita-icon-theme all 3.30.1-1 [11.7 MB] Get:93 http://deb.debian.org/debian buster/main amd64 libcommons-collections3-java all 3.2.2-2 [526 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libcommons-dbcp-java all 1.4-6 [157 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libhsqldb-java all 2.4.1-2 [1633 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libbiojava1.7-java all 1:1.7.1-8 [3274 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libbiojava-java all 1:1.7.1-8 [48.5 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libcommons-cli-java all 1.4-1 [55.2 kB] Get:99 http://deb.debian.org/debian buster/main amd64 alien-hunter all 1.7-7 [28.7 kB] Get:100 http://deb.debian.org/debian buster/main amd64 ant-optional all 1.10.5-2 [379 kB] Get:101 http://deb.debian.org/debian buster/main amd64 ant all 1.10.5-2 [2082 kB] Get:102 http://deb.debian.org/debian buster/main amd64 ant-contrib all 1.0~b3+svn177-10 [262 kB] Get:103 http://deb.debian.org/debian buster/main amd64 aragorn amd64 1.2.38-2 [85.3 kB] Get:104 http://deb.debian.org/debian buster/main amd64 python-htseq amd64 0.11.2-1 [231 kB] Get:105 http://deb.debian.org/debian buster/main amd64 arden all 1.0-4 [88.8 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libatspi2.0-0 amd64 2.30.0-7 [65.0 kB] Get:107 http://deb.debian.org/debian buster/main amd64 at-spi2-core amd64 2.30.0-7 [70.7 kB] Get:108 http://deb.debian.org/debian buster/main amd64 autodock amd64 4.2.6-6 [160 kB] Get:109 http://deb.debian.org/debian buster/main amd64 autogrid amd64 4.2.6-6 [47.0 kB] Get:110 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:111 http://deb.debian.org/debian buster/main amd64 bioperl-run all 1.7.2-4 [45.2 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libbio-perl-run-perl all 1.7.2-4 [748 kB] Get:113 http://deb.debian.org/debian buster/main amd64 ncbi-tools-bin amd64 6.1.20170106+dfsg1-0+deb10u2 [1938 kB] Get:114 http://deb.debian.org/debian buster/main amd64 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] Get:115 http://deb.debian.org/debian buster/main amd64 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] Get:116 http://deb.debian.org/debian buster/main amd64 blends-common all 0.7.2 [24.7 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:121 http://deb.debian.org/debian buster/main amd64 blt amd64 2.5.3+dfsg-4 [14.8 kB] Get:122 http://deb.debian.org/debian buster/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [587 kB] Get:123 http://deb.debian.org/debian buster/main amd64 bowtie2 amd64 2.3.4.3-1 [1188 kB] Get:124 http://deb.debian.org/debian buster/main amd64 boxshade amd64 3.3.1-12 [55.3 kB] Get:125 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get:126 http://deb.debian.org/debian buster/main amd64 bzip2-doc all 1.0.6-9.2~deb10u1 [493 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u5 [1160 kB] Get:129 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get:130 http://deb.debian.org/debian buster/main amd64 isympy-common all 1.3-2 [186 kB] Get:131 http://deb.debian.org/debian buster/main amd64 python-mpmath all 1.1.0-1 [412 kB] Get:132 http://deb.debian.org/debian buster/main amd64 python-sympy all 1.3-2 [3500 kB] Get:133 http://deb.debian.org/debian buster/main amd64 dpkg-dev all 1.19.8 [1776 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libdpkg-perl all 1.19.8 [1415 kB] Get:135 http://deb.debian.org/debian buster/main amd64 patch amd64 2.7.6-3+deb10u1 [126 kB] Get:136 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get:138 http://deb.debian.org/debian buster/main amd64 cain-solvers amd64 1.10+dfsg-3 [938 kB] Get:139 http://deb.debian.org/debian buster/main amd64 cain all 1.10+dfsg-3 [10.8 MB] Get:140 http://deb.debian.org/debian buster/main amd64 cain-examples all 1.10+dfsg-3 [168 kB] Get:141 http://deb.debian.org/debian buster/main amd64 cd-hit amd64 4.6.8-2 [521 kB] Get:142 http://deb.debian.org/debian buster/main amd64 cdbfasta amd64 0.99-20100722-5 [56.3 kB] Get:143 http://deb.debian.org/debian buster/main amd64 cdbs all 0.4.159 [83.7 kB] Get:144 http://deb.debian.org/debian buster/main amd64 fonts-circos-symbols all 0.69.6+dfsg-2 [46.5 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libregexp-common-perl all 2017060201-1 [177 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libcarp-always-perl all 0.16-1 [9620 B] Get:147 http://deb.debian.org/debian buster/main amd64 liblist-someutils-perl all 0.56-1 [42.7 kB] Get:148 http://deb.debian.org/debian buster/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:149 http://deb.debian.org/debian buster/main amd64 liblist-allutils-perl all 0.15-1 [33.9 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:152 http://deb.debian.org/debian buster/main amd64 libspiffy-perl all 0.46-1 [25.7 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libio-all-perl all 0.87-1 [66.7 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libmath-vecstat-perl all 0.08-2 [8492 B] Get:155 http://deb.debian.org/debian buster/main amd64 libtext-format-perl all 0.61-1 [20.2 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libsvg-perl all 2.84-1 [67.9 kB] Get:157 http://deb.debian.org/debian buster/main amd64 circos all 0.69.6+dfsg-2 [20.0 MB] Get:158 http://deb.debian.org/debian buster/main amd64 circos-tools all 0.23-1 [18.7 MB] Get:159 http://deb.debian.org/debian buster/main amd64 clearcut amd64 1.0.9-3 [289 kB] Get:160 http://deb.debian.org/debian buster/main amd64 clustalw amd64 2.1+lgpl-6 [282 kB] Get:161 http://deb.debian.org/debian buster/main amd64 concavity amd64 0.1+dfsg.1-4 [296 kB] Get:162 http://deb.debian.org/debian buster/main amd64 conservation-code all 20110309.0-7 [23.7 kB] Get:163 http://deb.debian.org/debian buster/main amd64 cython amd64 0.29.2-2 [1365 kB] Get:164 http://deb.debian.org/debian buster/main amd64 datamash amd64 1.4-1 [783 kB] Get:165 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get:166 http://deb.debian.org/debian buster/main amd64 dialign amd64 2.2.1-10 [139 kB] Get:167 http://deb.debian.org/debian buster/main amd64 dialign-tx amd64 1.0.2-12 [76.9 kB] Get:168 http://deb.debian.org/debian buster/main amd64 dialign-tx-data all 1.0.2-12 [869 kB] Get:169 http://deb.debian.org/debian buster/main amd64 disulfinder-data all 1.2.11-8 [1126 kB] Get:170 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get:171 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:174 http://deb.debian.org/debian buster/main amd64 dvipng amd64 1.15-1.1 [87.8 kB] Get:175 http://deb.debian.org/debian buster/main amd64 embassy-domainatrix amd64 0.1.660-3 [62.8 kB] Get:176 http://deb.debian.org/debian buster/main amd64 embassy-domalign amd64 0.1.660-3 [68.3 kB] Get:177 http://deb.debian.org/debian buster/main amd64 embassy-domsearch amd64 1:0.1.660-3 [61.9 kB] Get:178 http://deb.debian.org/debian buster/main amd64 exonerate amd64 2.4.0-4 [1544 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libfakeroot amd64 1.23-1 [45.9 kB] Get:180 http://deb.debian.org/debian buster/main amd64 fakeroot amd64 1.23-1 [85.8 kB] Get:181 http://deb.debian.org/debian buster/main amd64 fastdnaml amd64 1.2.2-14 [60.7 kB] Get:182 http://deb.debian.org/debian buster/main amd64 fastlink amd64 4.1P-fix100+dfsg-2 [251 kB] Get:183 http://deb.debian.org/debian buster/main amd64 fasttree amd64 2.1.10-2 [176 kB] Get:184 http://deb.debian.org/debian buster/main amd64 libgtextutils0v5 amd64 0.7-6 [19.4 kB] Get:185 http://deb.debian.org/debian buster/main amd64 libgd-graph-perl all 1.54~ds-2 [125 kB] Get:186 http://deb.debian.org/debian buster/main amd64 fastx-toolkit amd64 0.0.14-6 [112 kB] Get:187 http://deb.debian.org/debian buster/main amd64 fitgcp amd64 0.0.20150429-2 [12.5 kB] Get:188 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:189 http://deb.debian.org/debian buster/main amd64 fonts-comfortaa all 3.001-2 [131 kB] Get:190 http://deb.debian.org/debian buster/main amd64 fonts-croscore all 20181227-1 [2142 kB] Get:191 http://deb.debian.org/debian buster/main amd64 fonts-crosextra-caladea all 20130214-2 [82.3 kB] Get:192 http://deb.debian.org/debian buster/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB] Get:193 http://deb.debian.org/debian buster/main amd64 fonts-freefont-otf all 20120503-9 [3169 kB] Get:194 http://deb.debian.org/debian buster/main amd64 fonts-freefont-ttf all 20120503-9 [4319 kB] Get:195 http://deb.debian.org/debian buster/main amd64 fonts-junicode all 1.001-2 [686 kB] Get:196 http://deb.debian.org/debian buster/main amd64 fonts-linuxlibertine all 5.3.0-4 [1653 kB] Get:197 http://deb.debian.org/debian buster/main amd64 fonts-lyx all 2.3.2-1 [199 kB] Get:198 http://deb.debian.org/debian buster/main amd64 fonts-noto-mono all 20181227-1 [83.1 kB] Get:199 http://deb.debian.org/debian buster/main amd64 fonts-sil-gentium all 20081126:1.03-2 [250 kB] Get:200 http://deb.debian.org/debian buster/main amd64 fonts-sil-gentium-basic all 1.102-1 [388 kB] Get:201 http://deb.debian.org/debian buster/main amd64 fonts-sil-gentiumplus all 5.000-2 [2812 kB] Get:202 http://deb.debian.org/debian buster/main amd64 mummer amd64 3.23+dfsg-4 [809 kB] Get:203 http://deb.debian.org/debian buster/main amd64 fsa amd64 1.15.9+dfsg-4 [740 kB] Get:204 http://deb.debian.org/debian buster/main amd64 gasic amd64 0.0.r19-4 [20.3 kB] Get:205 http://deb.debian.org/debian buster/main amd64 genometools-common all 1.5.10+ds-3 [189 kB] Get:206 http://deb.debian.org/debian buster/main amd64 gff2aplot amd64 2.0-11 [315 kB] Get:207 http://deb.debian.org/debian buster/main amd64 gff2ps all 0.98l-2 [60.0 kB] Get:208 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:209 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:210 http://deb.debian.org/debian buster/main amd64 libglpk40 amd64 4.65-2 [418 kB] Get:211 http://deb.debian.org/debian buster/main amd64 libglpk-java amd64 1.12.0-1 [778 kB] Get:212 http://deb.debian.org/debian buster/main amd64 glpk-utils amd64 4.65-2 [310 kB] Get:213 http://deb.debian.org/debian buster/main amd64 giira amd64 0.0.20140625-2 [143 kB] Get:214 http://deb.debian.org/debian buster/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:215 http://deb.debian.org/debian buster/main amd64 glam2 amd64 1064-5 [236 kB] Get:216 http://deb.debian.org/debian buster/main amd64 gnome-icon-theme all 3.12.0-3 [9869 kB] Get:217 http://deb.debian.org/debian buster/main amd64 gnupg-l10n all 2.2.12-1+deb10u2 [1009 kB] Get:218 http://deb.debian.org/debian buster/main amd64 grinder all 0.5.4-5 [85.1 kB] Get:219 http://deb.debian.org/debian buster/main amd64 gsettings-desktop-schemas all 3.28.1-1 [529 kB] Get:220 http://deb.debian.org/debian buster/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3125 kB] Get:221 http://deb.debian.org/debian buster/main amd64 hyphy-common all 2.3.14+dfsg-1 [661 kB] Get:222 http://deb.debian.org/debian buster/main amd64 idba amd64 1.1.3-3 [381 kB] Get:223 http://deb.debian.org/debian buster/main amd64 imagemagick amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [156 kB] Get:224 http://deb.debian.org/debian buster/main amd64 imagemagick-6-common all 8:6.9.10.23+dfsg-2.1+deb10u1 [200 kB] Get:225 http://deb.debian.org/debian buster/main amd64 python-decorator all 4.3.0-1.1 [14.4 kB] Get:226 http://deb.debian.org/debian buster/main amd64 python-ptyprocess all 0.6.0-1 [13.1 kB] Get:227 http://deb.debian.org/debian buster/main amd64 python-pexpect all 4.6.0-1 [51.6 kB] Get:228 http://deb.debian.org/debian buster/main amd64 python-pickleshare all 0.7.5-1 [7276 B] Get:229 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get:230 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get:231 http://deb.debian.org/debian buster/main amd64 python-wcwidth all 0.1.7+dfsg1-3 [15.0 kB] Get:232 http://deb.debian.org/debian buster/main amd64 python-prompt-toolkit all 1.0.15-1 [179 kB] Get:233 http://deb.debian.org/debian buster/main amd64 python-pygments all 2.3.1+dfsg-1+deb10u2 [596 kB] Get:234 http://deb.debian.org/debian buster/main amd64 python-simplegeneric all 0.8.1-2 [11.0 kB] Get:235 http://deb.debian.org/debian buster/main amd64 python-ipython-genutils all 0.2.0-1 [20.8 kB] Get:236 http://deb.debian.org/debian buster/main amd64 python-enum34 all 1.1.6-2 [35.3 kB] Get:237 http://deb.debian.org/debian buster/main amd64 python-traitlets all 4.3.2-1 [60.7 kB] Get:238 http://deb.debian.org/debian buster/main amd64 python-backports-shutil-get-terminal-size all 1.0.0-5 [5088 B] Get:239 http://deb.debian.org/debian buster/main amd64 ipython all 5.8.0-1+deb10u1 [14.3 kB] Get:240 http://deb.debian.org/debian buster/main amd64 python-ipython all 5.8.0-1+deb10u1 [390 kB] Get:241 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get:242 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:243 http://deb.debian.org/debian buster/main amd64 java-wrappers all 0.3 [10.9 kB] Get:244 http://deb.debian.org/debian buster/main amd64 jellyfish amd64 2.2.10-2 [361 kB] Get:245 http://deb.debian.org/debian buster/main amd64 libjellyfish-2.0-2 amd64 2.2.10-2 [64.6 kB] Get:246 http://deb.debian.org/debian buster/main amd64 libhamcrest-java all 1.3-9 [388 kB] Get:247 http://deb.debian.org/debian buster/main amd64 junit4 all 4.12-8 [292 kB] Get:248 http://deb.debian.org/debian buster/main amd64 kalign amd64 1:2.03+20110620-5 [92.9 kB] Get:249 http://deb.debian.org/debian buster/main amd64 laptop-detect all 0.16 [7238 B] Get:250 http://deb.debian.org/debian buster/main amd64 parallel all 20161222-1.1 [306 kB] Get:251 http://deb.debian.org/debian buster/main amd64 last-align amd64 963-2 [755 kB] Get:252 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:253 http://deb.debian.org/debian buster/main amd64 libaio1 amd64 0.3.112-3 [11.2 kB] Get:254 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get:255 http://deb.debian.org/debian buster/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:256 http://deb.debian.org/debian buster/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:257 http://deb.debian.org/debian buster/main amd64 libapache-pom-java all 18-1 [4676 B] Get:258 http://deb.debian.org/debian buster/main amd64 libapache2-reload-perl all 0.13-2 [17.0 kB] Get:259 http://deb.debian.org/debian buster/main amd64 libapr1 amd64 1.6.5-1+b1 [102 kB] Get:260 http://deb.debian.org/debian buster/main amd64 libarray-compare-perl all 3.0.2-1 [14.5 kB] Get:261 http://deb.debian.org/debian buster/main amd64 libart-2.0-2 amd64 2.3.21-4 [66.8 kB] Get:262 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get:263 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get:264 http://deb.debian.org/debian buster/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:265 http://deb.debian.org/debian buster/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:266 http://deb.debian.org/debian buster/main amd64 libatk-wrapper-java all 0.33.3-22+deb10u1 [45.5 kB] Get:267 http://deb.debian.org/debian buster/main amd64 libcairo-gobject2 amd64 1.16.0-4+deb10u1 [125 kB] Get:268 http://deb.debian.org/debian buster/main amd64 libgtk2.0-common all 2.24.32-3 [2698 kB] Get:269 http://deb.debian.org/debian buster/main amd64 libgtk2.0-bin amd64 2.24.32-3 [48.5 kB] Get:270 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:271 http://deb.debian.org/debian buster/main amd64 libgail-common amd64 2.24.32-3 [156 kB] Get:272 http://deb.debian.org/debian buster/main amd64 libgail18 amd64 2.24.32-3 [55.5 kB] Get:273 http://deb.debian.org/debian buster/main amd64 libxcursor1 amd64 1:1.1.15-2 [36.6 kB] Get:274 http://deb.debian.org/debian buster/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get:275 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get:276 http://deb.debian.org/debian buster/main amd64 libgtk2.0-0 amd64 2.24.32-3 [1809 kB] Get:277 http://deb.debian.org/debian buster/main amd64 libatk-wrapper-java-jni amd64 0.33.3-22+deb10u1 [39.5 kB] Get:278 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:279 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:280 http://deb.debian.org/debian buster/main amd64 libaudio2 amd64 1.9.4-6 [80.0 kB] Get:281 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get:282 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get:283 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get:284 http://deb.debian.org/debian buster/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:285 http://deb.debian.org/debian buster/main amd64 libcommons-codec-java all 1.11-1 [271 kB] Get:286 http://deb.debian.org/debian buster/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get:287 http://deb.debian.org/debian buster/main amd64 libcommons-httpclient-java all 3.1-15 [291 kB] Get:288 http://deb.debian.org/debian buster/main amd64 libaxis-java all 1.4-28 [1496 kB] Get:289 http://deb.debian.org/debian buster/main amd64 libbambamc0 amd64 0.0.50-3 [37.9 kB] Get:290 http://deb.debian.org/debian buster/main amd64 libbcprov-java all 1.60-1 [3258 kB] Get:291 http://deb.debian.org/debian buster/main amd64 libbio-asn1-entrezgene-perl all 1.720-2 [38.7 kB] Get:292 http://deb.debian.org/debian buster/main amd64 libcap2 amd64 1:2.25-2 [17.6 kB] Get:293 http://deb.debian.org/debian buster/main amd64 libcarp-clan-perl all 6.07-1 [15.3 kB] Get:294 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get:295 http://deb.debian.org/debian buster/main amd64 libcgi-fast-perl all 1:2.13-1 [11.4 kB] Get:296 http://deb.debian.org/debian buster/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:297 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get:298 http://deb.debian.org/debian buster/main amd64 libclass-inspector-perl all 1.32-1 [19.1 kB] Get:299 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:300 http://deb.debian.org/debian buster/main amd64 libcolord2 amd64 1.4.3-4 [141 kB] Get:301 http://deb.debian.org/debian buster/main amd64 libcommons-compress-java all 1.18-2+deb10u1 [531 kB] Get:302 http://deb.debian.org/debian buster/main amd64 libcommons-jexl2-java all 2.1.1-4 [257 kB] Get:303 http://deb.debian.org/debian buster/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get:304 http://deb.debian.org/debian buster/main amd64 libcommons-net-java all 3.6-1 [284 kB] Get:305 http://deb.debian.org/debian buster/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:306 http://deb.debian.org/debian buster/main amd64 libcrypt-rc4-perl all 2.02-3 [7704 B] Get:307 http://deb.debian.org/debian buster/main amd64 libcupsfilters1 amd64 1.21.6-5 [172 kB] Get:308 http://deb.debian.org/debian buster/main amd64 libdate-manip-perl all 6.76-1 [930 kB] Get:309 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:310 http://deb.debian.org/debian buster/main amd64 libdevel-symdump-perl all 2.18-3 [17.3 kB] Get:311 http://deb.debian.org/debian buster/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get:312 http://deb.debian.org/debian buster/main amd64 libdjvulibre-text all 3.5.27.1-10+deb10u1 [61.4 kB] Get:313 http://deb.debian.org/debian buster/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:314 http://deb.debian.org/debian buster/main amd64 libdom4j-java all 2.1.1-2 [310 kB] Get:315 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:316 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:317 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:318 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:319 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:320 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:321 http://deb.debian.org/debian buster/main amd64 libelk0 amd64 3.99.8-4.2+b1 [166 kB] Get:322 http://deb.debian.org/debian buster/main amd64 libepoxy0 amd64 1.5.3-0.1 [190 kB] Get:323 http://deb.debian.org/debian buster/main amd64 liberror-perl all 0.17027-2 [30.9 kB] Get:324 http://deb.debian.org/debian buster/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:325 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:326 http://deb.debian.org/debian buster/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get:327 http://deb.debian.org/debian buster/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:328 http://deb.debian.org/debian buster/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:329 http://deb.debian.org/debian buster/main amd64 libfile-mimeinfo-perl all 0.29-1 [46.5 kB] Get:330 http://deb.debian.org/debian buster/main amd64 libfile-slurp-tiny-perl all 0.004-1 [7288 B] Get:331 http://deb.debian.org/debian buster/main amd64 libogg0 amd64 1.3.2-1+b1 [21.3 kB] Get:332 http://deb.debian.org/debian buster/main amd64 libflac8 amd64 1.3.2-3+deb10u2 [193 kB] Get:333 http://deb.debian.org/debian buster/main amd64 libfreezethaw-perl all 0.5001-2 [16.8 kB] Get:334 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:335 http://deb.debian.org/debian buster/main amd64 libg20 amd64 0.72-8+b1 [43.1 kB] Get:336 http://deb.debian.org/debian buster/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:337 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get:338 http://deb.debian.org/debian buster/main amd64 libglade2-0 amd64 1:2.6.4-2+b1 [82.2 kB] Get:339 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get:340 http://deb.debian.org/debian buster/main amd64 libglu1-mesa amd64 9.0.0-2.1+b3 [169 kB] Get:341 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:342 http://deb.debian.org/debian buster/main amd64 libgraph-perl all 1:0.9704-1 [119 kB] Get:343 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:344 http://deb.debian.org/debian buster/main amd64 libgtk-3-common all 3.24.5-1 [3678 kB] Get:345 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get:346 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:347 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:348 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:349 http://deb.debian.org/debian buster/main amd64 libhtml-tableextract-perl all 2.15-1 [30.2 kB] Get:350 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:351 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:352 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:353 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get:354 http://deb.debian.org/debian buster/main amd64 libhttp-daemon-perl all 6.01-3 [16.6 kB] Get:355 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:356 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:357 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:358 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:359 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:360 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:361 http://deb.debian.org/debian buster/main amd64 libijs-0.35 amd64 0.35-14 [18.3 kB] Get:362 http://deb.debian.org/debian buster/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:363 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:364 http://deb.debian.org/debian buster/main amd64 libisorelax-java all 20041111-12 [64.4 kB] Get:365 http://deb.debian.org/debian buster/main amd64 libjbig2dec0 amd64 0.16-1+deb10u1 [62.2 kB] Get:366 http://deb.debian.org/debian buster/main amd64 libjbzip2-java all 0.9.1-5 [42.6 kB] Get:367 http://deb.debian.org/debian buster/main amd64 libjdom1-java all 1.1.3-2 [156 kB] Get:368 http://deb.debian.org/debian buster/main amd64 libjets3t-java all 0.8.1+dfsg-4 [492 kB] Get:369 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get:370 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:371 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:372 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get:373 http://deb.debian.org/debian buster/main amd64 libjzlib-java all 1.1.3-2 [80.0 kB] Get:374 http://deb.debian.org/debian buster/main amd64 libjsch-java all 0.1.55-1 [298 kB] Get:375 http://deb.debian.org/debian buster/main amd64 libjson-glib-1.0-common all 1.4.4-2 [52.3 kB] Get:376 http://deb.debian.org/debian buster/main amd64 libjson-glib-1.0-0 amd64 1.4.4-2 [61.2 kB] Get:377 http://deb.debian.org/debian buster/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:378 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:379 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:380 http://deb.debian.org/debian buster/main amd64 liblog4j1.2-java all 1.2.17-8+deb10u2 [409 kB] Get:381 http://deb.debian.org/debian buster/main amd64 liblqr-1-0 amd64 0.4.2-2.1 [29.1 kB] Get:382 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get:383 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:384 http://deb.debian.org/debian buster/main amd64 liblzo2-2 amd64 2.10-0.1 [56.1 kB] Get:385 http://deb.debian.org/debian buster/main amd64 libmath-derivative-perl all 1.01-1 [8956 B] Get:386 http://deb.debian.org/debian buster/main amd64 libmath-spline-perl all 0.02-2 [7644 B] Get:387 http://deb.debian.org/debian buster/main amd64 libmime-tools-perl all 5.509-1 [212 kB] Get:388 http://deb.debian.org/debian buster/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:389 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:390 http://deb.debian.org/debian buster/main amd64 libxml-commons-external-java all 1.4.01-3 [240 kB] Get:391 http://deb.debian.org/debian buster/main amd64 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] Get:392 http://deb.debian.org/debian buster/main amd64 libxerces2-java all 2.12.0-1 [1440 kB] Get:393 http://deb.debian.org/debian buster/main amd64 libmsv-java all 2009.1+dfsg1-6 [760 kB] Get:394 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:395 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:396 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:397 http://deb.debian.org/debian buster/main amd64 libnotify4 amd64 0.7.7-4 [29.0 kB] Get:398 http://deb.debian.org/debian buster/main amd64 libnpth0 amd64 1.6-1 [18.4 kB] Get:399 http://deb.debian.org/debian buster/main amd64 libntlm0 amd64 1.5-1+deb10u1 [22.7 kB] Get:400 http://deb.debian.org/debian buster/main amd64 libole-storage-lite-perl all 0.19-2+deb10u1 [24.0 kB] Get:401 http://deb.debian.org/debian buster/main amd64 libopenjp2-7 amd64 2.3.0-2+deb10u2 [158 kB] Get:402 http://deb.debian.org/debian buster/main amd64 liboro-java all 2.0.8a-13 [71.1 kB] Get:403 http://deb.debian.org/debian buster/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b7 [38.1 kB] Get:404 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:405 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:406 http://deb.debian.org/debian buster/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get:407 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get:408 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get:409 http://deb.debian.org/debian buster/main amd64 libperl4-corelibs-perl all 0.004-1+deb10u1 [38.4 kB] Get:410 http://deb.debian.org/debian buster/main amd64 libpostscript-perl all 0.06-3 [25.9 kB] Get:411 http://deb.debian.org/debian buster/main amd64 libpotrace0 amd64 1.15-1 [26.3 kB] Get:412 http://deb.debian.org/debian buster/main amd64 libproxy1v5 amd64 0.4.15-5+deb10u1 [56.1 kB] Get:413 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:414 http://deb.debian.org/debian buster/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:415 http://deb.debian.org/debian buster/main amd64 libqtgui4 amd64 4:4.8.7+dfsg-18+deb10u1 [4234 kB] Get:416 http://deb.debian.org/debian buster/main amd64 qtcore4-l10n all 4:4.8.7+dfsg-18+deb10u1 [662 kB] Get:417 http://deb.debian.org/debian buster/main amd64 libqtdbus4 amd64 4:4.8.7+dfsg-18+deb10u1 [238 kB] Get:418 http://deb.debian.org/debian buster/main amd64 libqt4-dbus amd64 4:4.8.7+dfsg-18+deb10u1 [53.9 kB] Get:419 http://deb.debian.org/debian buster/main amd64 qdbus amd64 4:4.8.7+dfsg-18+deb10u1 [77.6 kB] Get:420 http://deb.debian.org/debian buster/main amd64 libqt4-xml amd64 4:4.8.7+dfsg-18+deb10u1 [149 kB] Get:421 http://deb.debian.org/debian buster/main amd64 libqtcore4 amd64 4:4.8.7+dfsg-18+deb10u1 [1640 kB] Get:422 http://deb.debian.org/debian buster/main amd64 libregexp-java all 1.5-4 [37.1 kB] Get:423 http://deb.debian.org/debian buster/main amd64 libsoup2.4-1 amd64 2.64.2-2 [253 kB] Get:424 http://deb.debian.org/debian buster/main amd64 libsoup-gnome2.4-1 amd64 2.64.2-2 [18.0 kB] Get:425 http://deb.debian.org/debian buster/main amd64 librest-0.7-0 amd64 0.8.1-1 [33.7 kB] Get:426 http://deb.debian.org/debian buster/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:427 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:428 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:429 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:430 http://deb.debian.org/debian buster/main amd64 libsasl2-modules amd64 2.1.27+dfsg-1+deb10u2 [104 kB] Get:431 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:432 http://deb.debian.org/debian buster/main amd64 libsnappy1v5 amd64 1.1.7-1 [17.0 kB] Get:433 http://deb.debian.org/debian buster/main amd64 libsnappy-jni amd64 1.1.7.2-1 [7148 B] Get:434 http://deb.debian.org/debian buster/main amd64 libsnappy-java all 1.1.7.2-1 [73.7 kB] Get:435 http://deb.debian.org/debian buster/main amd64 libvorbisenc2 amd64 1.3.6-2 [80.2 kB] Get:436 http://deb.debian.org/debian buster/main amd64 libvorbis0a amd64 1.3.6-2 [93.5 kB] Get:437 http://deb.debian.org/debian buster/main amd64 libsndfile1 amd64 1.0.28-6+deb10u1 [253 kB] Get:438 http://deb.debian.org/debian buster/main amd64 libxmlrpc-lite-perl all 0.717-2 [22.3 kB] Get:439 http://deb.debian.org/debian buster/main amd64 libtask-weaken-perl all 1.06-1 [9252 B] Get:440 http://deb.debian.org/debian buster/main amd64 libsoap-lite-perl all 1.27-1 [258 kB] Get:441 http://deb.debian.org/debian buster/main amd64 libsort-naturally-perl all 1.03-2 [13.5 kB] Get:442 http://deb.debian.org/debian buster/main amd64 libsprng2 amd64 2.0a-12 [75.7 kB] Get:443 http://deb.debian.org/debian buster/main amd64 libsquizz amd64 0.99d+dfsg-2 [269 kB] Get:444 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:445 http://deb.debian.org/debian buster/main amd64 libstatistics-descriptive-perl all 3.0702-1 [64.8 kB] Get:446 http://deb.debian.org/debian buster/main amd64 libstrictures-perl all 2.000005-1 [18.3 kB] Get:447 http://deb.debian.org/debian buster/main amd64 libtree-dagnode-perl all 1.31-1 [61.4 kB] Get:448 http://deb.debian.org/debian buster/main amd64 libsvg-graph-perl all 0.02-3 [114 kB] Get:449 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:450 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:451 http://deb.debian.org/debian buster/main amd64 libtest-pod-perl all 1.52-1 [14.2 kB] Get:452 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:453 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:454 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get:455 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:456 http://deb.debian.org/debian buster/main amd64 libunwind8 amd64 1.2.1-10~deb10u1 [51.1 kB] Get:457 http://deb.debian.org/debian buster/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get:458 http://deb.debian.org/debian buster/main amd64 libwayland-cursor0 amd64 1.16.0-1 [14.1 kB] Get:459 http://deb.debian.org/debian buster/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get:460 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:461 http://deb.debian.org/debian buster/main amd64 libwmf0.2-7 amd64 0.2.8.4-14 [166 kB] Get:462 http://deb.debian.org/debian buster/main amd64 libwrap0 amd64 7.6.q-28 [58.7 kB] Get:463 http://deb.debian.org/debian buster/main amd64 tcpd amd64 7.6.q-28 [23.8 kB] Get:464 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:465 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get:466 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:467 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:468 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:469 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:470 http://deb.debian.org/debian buster/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get:471 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:472 http://deb.debian.org/debian buster/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get:473 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get:474 http://deb.debian.org/debian buster/main amd64 libxkbcommon0 amd64 0.8.2-1 [123 kB] Get:475 http://deb.debian.org/debian buster/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:476 http://deb.debian.org/debian buster/main amd64 libxml-dom-xpath-perl all 0.14-3 [9066 B] Get:477 http://deb.debian.org/debian buster/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:478 http://deb.debian.org/debian buster/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:479 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:480 http://deb.debian.org/debian buster/main amd64 libxml-filter-buffertext-perl all 1.01-6 [6916 B] Get:481 http://deb.debian.org/debian buster/main amd64 libxml-perl all 0.08-3 [93.3 kB] Get:482 http://deb.debian.org/debian buster/main amd64 libxml-sax-expat-perl all 0.51-1 [12.0 kB] Get:483 http://deb.debian.org/debian buster/main amd64 libxml-sax-writer-perl all 0.57-1 [22.6 kB] Get:484 http://deb.debian.org/debian buster/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:485 http://deb.debian.org/debian buster/main amd64 libxml-twig-perl all 1:3.50-1.1 [179 kB] Get:486 http://deb.debian.org/debian buster/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get:487 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:488 http://deb.debian.org/debian buster/main amd64 libxpp2-java all 2.1.10-8 [101 kB] Get:489 http://deb.debian.org/debian buster/main amd64 libxpp3-java all 1.1.4c-3 [292 kB] Get:490 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get:491 http://deb.debian.org/debian buster/main amd64 libxz-java all 1.8-2 [141 kB] Get:492 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:493 http://deb.debian.org/debian buster/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:494 http://deb.debian.org/debian buster/main amd64 libyaml-tiny-perl all 1.73-1 [32.3 kB] Get:495 http://deb.debian.org/debian buster/main amd64 libzzip-0-13 amd64 0.13.62-3.2+deb10u1 [55.6 kB] Get:496 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:497 http://deb.debian.org/debian buster/main amd64 lua-lpeg amd64 1.0.0-2 [30.1 kB] Get:498 http://deb.debian.org/debian buster/main amd64 lua-md5 amd64 1.2+git+1+8d87fee-1.1 [13.6 kB] Get:499 http://deb.debian.org/debian buster/main amd64 lynx-common all 2.8.9rel.1-3+deb10u1 [1212 kB] Get:500 http://deb.debian.org/debian buster/main amd64 macs amd64 2.1.2.1-1 [2455 kB] Get:501 http://deb.debian.org/debian buster/main amd64 mafft amd64 7.407-2 [999 kB] Get:502 http://deb.debian.org/debian buster/main amd64 mysql-common all 5.8+1.0.5 [7324 B] Get:503 http://deb.debian.org/debian buster/main amd64 mariadb-common all 1:10.3.34-0+deb10u1 [33.0 kB] Get:504 http://deb.debian.org/debian buster/main amd64 melting all 5.2.0-1 [3673 kB] Get:505 http://deb.debian.org/debian buster/main amd64 minia amd64 1.6906-2 [180 kB] Get:506 http://deb.debian.org/debian buster/main amd64 mipe all 1.1-7 [58.8 kB] Get:507 http://deb.debian.org/debian buster/main amd64 mlv-smile amd64 1.47-6 [187 kB] Get:508 http://deb.debian.org/debian buster/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get:509 http://deb.debian.org/debian buster/main amd64 mrbayes amd64 3.2.6+dfsg-2+b1 [693 kB] Get:510 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:511 http://deb.debian.org/debian buster/main amd64 mustang amd64 3.2.3-3 [105 kB] Get:512 http://deb.debian.org/debian buster/main amd64 ncbi-epcr amd64 2.3.12-1-7 [123 kB] Get:513 http://deb.debian.org/debian buster/main amd64 ncoils amd64 2002-7 [21.9 kB] Get:514 http://deb.debian.org/debian buster/main amd64 neobio all 0.0.20030929-4 [292 kB] Get:515 http://deb.debian.org/debian buster/main amd64 notification-daemon amd64 3.20.0-4 [61.0 kB] Get:516 http://deb.debian.org/debian buster/main amd64 paraclu amd64 9-2 [11.7 kB] Get:517 http://deb.debian.org/debian buster/main amd64 parsinsert amd64 1.04-4 [62.2 kB] Get:518 http://deb.debian.org/debian buster/main amd64 pdb2pqr amd64 2.1.1+dfsg-5 [385 kB] Get:519 http://deb.debian.org/debian buster/main amd64 perm amd64 0.4.0-4 [124 kB] Get:520 http://deb.debian.org/debian buster/main amd64 phylip amd64 1:3.697+dfsg-1 [910 kB] Get:521 http://deb.debian.org/debian buster/main amd64 phyutility amd64 2.7.3+dfsg-2 [894 kB] Get:522 http://deb.debian.org/debian buster/main amd64 plink amd64 1.07+dfsg-2 [1112 kB] Get:523 http://deb.debian.org/debian buster/main amd64 poa amd64 2.0+20060928-7 [53.0 kB] Get:524 http://deb.debian.org/debian buster/main amd64 preview-latex-style all 11.91-2 [201 kB] Get:525 http://deb.debian.org/debian buster/main amd64 primer3 amd64 2.4.0-2 [180 kB] Get:526 http://deb.debian.org/debian buster/main amd64 probabel amd64 0.5.0+dfsg-3 [587 kB] Get:527 http://deb.debian.org/debian buster/main amd64 prodigal amd64 1:2.6.3-4 [695 kB] Get:528 http://deb.debian.org/debian buster/main amd64 publicsuffix all 20220811.1734-0+deb10u1 [127 kB] Get:529 http://deb.debian.org/debian buster/main amd64 pynast all 1.2.2-4 [81.6 kB] Get:530 http://deb.debian.org/debian buster/main amd64 python-cairo amd64 1.16.2-1+b1 [58.4 kB] Get:531 http://deb.debian.org/debian buster/main amd64 python-chardet all 3.0.4-3 [80.6 kB] Get:532 http://deb.debian.org/debian buster/main amd64 python-dateutil all 2.7.3-3 [76.8 kB] Get:533 http://deb.debian.org/debian buster/main amd64 python-gmpy amd64 1.17-4 [73.7 kB] Get:534 http://deb.debian.org/debian buster/main amd64 python-gobject-2 amd64 2.28.6-13+b1 [288 kB] Get:535 http://deb.debian.org/debian buster/main amd64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get:536 http://deb.debian.org/debian buster/main amd64 python-pygraphviz amd64 1.5-1 [76.5 kB] Get:537 http://deb.debian.org/debian buster/main amd64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get:538 http://deb.debian.org/debian buster/main amd64 python-renderpm amd64 3.5.13-1+deb10u1 [76.6 kB] Get:539 http://deb.debian.org/debian buster/main amd64 python-reportlab-accel amd64 3.5.13-1+deb10u1 [39.8 kB] Get:540 http://deb.debian.org/debian buster/main amd64 python-reportlab all 3.5.13-1+deb10u1 [545 kB] Get:541 http://deb.debian.org/debian buster/main amd64 python-subprocess32 amd64 3.5.3-1 [29.9 kB] Get:542 http://deb.debian.org/debian buster/main amd64 python-sympy-doc all 1.3-2 [7311 kB] Get:543 http://deb.debian.org/debian buster/main amd64 python-tk amd64 2.7.16-2 [27.5 kB] Get:544 http://deb.debian.org/debian buster/main amd64 python-tz all 2019.1-1 [33.6 kB] Get:545 http://deb.debian.org/debian buster/main amd64 python-wxversion all 3.0.2.0+dfsg-8 [114 kB] Get:546 http://deb.debian.org/debian buster/main amd64 python-yaml amd64 3.13-2 [127 kB] Get:547 http://deb.debian.org/debian buster/main amd64 qt-at-spi amd64 0.4.0-9 [62.7 kB] Get:548 http://deb.debian.org/debian buster/main amd64 r-doc-html all 3.5.2-1 [563 kB] Get:549 http://deb.debian.org/debian buster/main amd64 rake all 12.3.1-3+deb10u1 [67.1 kB] Get:550 http://deb.debian.org/debian buster/main amd64 raxml amd64 8.2.12+dfsg-1 [1275 kB] Get:551 http://deb.debian.org/debian buster/main amd64 readseq amd64 1-13 [55.9 kB] Get:552 http://deb.debian.org/debian buster/main amd64 rnahybrid amd64 2.1.2-5 [153 kB] Get:553 http://deb.debian.org/debian buster/main amd64 rtax all 0.984-6 [26.2 kB] Get:554 http://deb.debian.org/debian buster/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get:555 http://deb.debian.org/debian buster/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get:556 http://deb.debian.org/debian buster/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get:557 http://deb.debian.org/debian buster/main amd64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get:558 http://deb.debian.org/debian buster/main amd64 rubygems-integration all 1.11+deb10u1 [5212 B] Get:559 http://deb.debian.org/debian buster/main amd64 sibsim4 amd64 0.20-4 [30.6 kB] Get:560 http://deb.debian.org/debian buster/main amd64 sigma-align amd64 1.1.3-6 [24.1 kB] Get:561 http://deb.debian.org/debian buster/main amd64 sim4 amd64 0.0.20121010-5 [396 kB] Get:562 http://deb.debian.org/debian buster/main amd64 smalt amd64 0.7.6-8 [113 kB] Get:563 http://deb.debian.org/debian buster/main amd64 snap amd64 2013-11-29-9 [373 kB] Get:564 http://deb.debian.org/debian buster/main amd64 soapdenovo amd64 1.05-5 [944 kB] Get:565 http://deb.debian.org/debian buster/main amd64 soapdenovo2 amd64 241+dfsg-3 [719 kB] Get:566 http://deb.debian.org/debian buster/main amd64 squizz amd64 0.99d+dfsg-2 [31.7 kB] Get:567 http://deb.debian.org/debian buster/main amd64 ssake all 4.0-2 [49.6 kB] Get:568 http://deb.debian.org/debian buster/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:569 http://deb.debian.org/debian buster/main amd64 tcl amd64 8.6.9+1 [5636 B] Get:570 http://deb.debian.org/debian buster/main amd64 tcl8.6 amd64 8.6.9+dfsg-2 [123 kB] Get:571 http://deb.debian.org/debian buster/main amd64 tk amd64 8.6.9+1 [5676 B] Get:572 http://deb.debian.org/debian buster/main amd64 tk8.6 amd64 8.6.9-2 [72.1 kB] Get:573 http://deb.debian.org/debian buster/main amd64 tree-puzzle amd64 5.2-11 [136 kB] Get:574 http://deb.debian.org/debian buster/main amd64 tree-puzzle-doc all 5.2-11 [401 kB] Get:575 http://deb.debian.org/debian buster/main amd64 vcftools amd64 0.1.16-1 [450 kB] Get:576 http://deb.debian.org/debian buster/main amd64 velvet amd64 1.2.10+dfsg1-5 [684 kB] Get:577 http://deb.debian.org/debian buster/main amd64 wise amd64 2.4.1-21 [978 kB] Get:578 http://deb.debian.org/debian buster/main amd64 wise-data all 2.4.1-21 [109 kB] Get:579 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] Get:580 http://deb.debian.org/debian buster/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:581 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get:582 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 275 MB in 13s (20.5 MB/s) (Reading database ... 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Restarting services possibly affected by the upgrade: /var/lib/dpkg/info/libpam0g:amd64.postinst: 139: /var/lib/dpkg/info/libpam0g:amd64.postinst: runlevel: not found exim4: stopping...starting...done. cron: stopping...starting...done. Services restarted successfully. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 177932 files and directories currently installed.) Preparing to unpack .../libpcre3-dev_2%3a8.39-12_amd64.deb ... 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Setting up libfile-which-perl (1.23-1) ... Setting up disulfinder-data (1.2.11-8) ... Setting up boxshade (3.3.1-12) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up liberror-perl (0.17027-2) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up python-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Setting up ncbi-tools-bin (6.1.20170106+dfsg1-0+deb10u2) ... Setting up libisorelax-java (20041111-12) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up dmidecode (3.2-1) ... Setting up libpcsclite1:amd64 (1.8.24-1) ... Setting up autogrid (4.2.6-6) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libgpm2:amd64 (1.20.7-5) ... Setting up libgtk-3-common (3.24.5-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u7) ... Setting up fonts-linuxlibertine (5.3.0-4) ... Removing obsolete conffile /etc/fonts/conf.avail/90-fonts-linux-libertine.conf ... Setting up libgraph-perl (1:0.9704-1) ... Setting up poppler-data (0.4.9-2) ... Setting up python-reportlab (3.5.13-1+deb10u1) ... Setting up libdjvulibre-text (3.5.27.1-10+deb10u1) ... Setting up libgtextutils0v5:amd64 (0.7-6) ... Setting up libbio-asn1-entrezgene-perl (1.720-2) ... Setting up libfreezethaw-perl (0.5001-2) ... Setting up python-htseq (0.11.2-1) ... Setting up libpng-tools (1.6.36-6) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up mrbayes (3.2.6+dfsg-2+b1) ... Setting up sibsim4 (0.20-4) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up tzdata (2021a-0+deb10u6) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 12 20:44:15 UTC 2023. Universal Time is now: Sun Mar 12 20:44:15 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsvg-perl (2.84-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up python-wxversion (3.0.2.0+dfsg-8) ... Setting up libxml-commons-external-java (1.4.01-3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up datamash (1.4-1) ... Setting up qtcore4-l10n (4:4.8.7+dfsg-18+deb10u1) ... Setting up mummer (3.23+dfsg-4) ... Setting up mysql-common (5.8+1.0.5) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libasound2-data (1.1.8-1) ... Setting up probabel (0.5.0+dfsg-3) ... Setting up clearcut (1.0.9-3) ... Setting up libcap2:amd64 (1:2.25-2) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Setting up blast2 (1:2.8.1-1+deb10u1) ... Setting up libarray-compare-perl (3.0.2-1) ... Setting up xkb-data (2.26-2) ... Setting up qtchooser (66-2) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up python-tz (2019.1-1) ... Setting up velvet (1.2.10+dfsg1-5) ... Setting up libsoup2.4-1:amd64 (2.64.2-2) ... Setting up unzip (6.0-23+deb10u2) ... Setting up libproxy1v5:amd64 (0.4.15-5+deb10u1) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Setting up dialign (2.2.1-10) ... Setting up java-common (0.71) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libhsqldb-java (2.4.1-2) ... Setting up exonerate (2.4.0-4) ... Setting up libcarp-clan-perl (6.07-1) ... Setting up libdpkg-perl (1.19.8) ... Setting up libcommons-net-java (3.6-1) ... Setting up libmath-derivative-perl (1.01-1) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libyaml-perl (1.27-1) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Processing triggers for menu (2.1.47+b1) ... Setting up concavity (0.1+dfsg.1-4) ... Setting up ncbi-epcr (2.3.12-1-7) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up fonts-freefont-otf (20120503-9) ... Setting up libgif7:amd64 (5.1.4-3) ... Setting up snap (2013-11-29-9) ... Setting up libsoup-gnome2.4-1:amd64 (2.64.2-2) ... Setting up fonts-texgyre (20180621-3) ... Setting up fitgcp (0.0.20150429-2) ... Setting up lua-md5:amd64 (1.2+git+1+8d87fee-1.1) ... Processing triggers for sgml-base (1.29) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up libregexp-java (1.5-4) ... Setting up idba (1.1.3-3) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up fonts-liberation (1:1.07.4-9) ... Setting up libyaml-tiny-perl (1.73-1) ... Setting up python-backports-shutil-get-terminal-size (1.0.0-5) ... Setting up laptop-detect (0.16) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libjbzip2-java (0.9.1-5) ... Setting up mira-rfam-12s-rrna (4.9.6-4) ... Will install rfam_rrna-21-12 with kmer size 21 as MIRA default rRNA filter in /usr/bin/../share/mira/mhs Installing. This can take a minute or two, please be patient. Done. MIRA can now use the functionality to filter for rRNA during assemblies. MIRABAIT can now use the '-j rrna' option. Setting up arden (1.0-4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up libcommons-dbcp-java (1.4-6) ... Setting up libxml-perl (0.08-3) ... Setting up cython (0.29.2-2) ... Setting up fonts-junicode (1.001-2) ... Setting up bowtie2 (2.3.4.3-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libtasn1-6:amd64 (4.13-3) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up fonts-noto-mono (20181227-1) ... Setting up gnupg-l10n (2.2.12-1+deb10u2) ... Setting up libasound2:amd64 (1.1.8-1) ... Setting up bzip2 (1.0.6-9.2~deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libjson-glib-1.0-0:amd64 (1.4.4-2) ... Setting up dialign-tx-data (1.0.2-12) ... Setting up lsb-base (10.2019051400) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up fsa (1.15.9+dfsg-4) ... Setting up mlv-smile (1.47-6) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up fonts-lato (2.0-2) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up sim4 (0.0.20121010-5) ... Setting up soapdenovo2 (241+dfsg-3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up raxml (8.2.12+dfsg-1) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up cdbfasta (0.99-20100722-5) ... Setting up liboro-java (2.0.8a-13) ... Setting up libogg0:amd64 (1.3.2-1+b1) ... Setting up acedb-other (4.9.39+dfsg.02-4) ... Setting up python-ipython-genutils (0.2.0-1) ... Setting up plink (1.07+dfsg-2) ... Setting up paraclu (9-2) ... Setting up liblog4j1.2-java (1.2.17-8+deb10u2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up pkg-config (0.29-6) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up liblqr-1-0:amd64 (0.4.2-2.1) ... Setting up libjbig2dec0:amd64 (0.16-1+deb10u1) ... Setting up libstrictures-perl (2.000005-1) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Setting up libntlm0:amd64 (1.5-1+deb10u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up soapdenovo (1.05-5) ... Setting up python-six (1.12.0-1) ... Setting up python-wcwidth (0.1.7+dfsg1-3) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up patch (2.7.6-3+deb10u1) ... Setting up libglib2.0-data (2.58.3-2+deb10u3) ... Setting up python-pickleshare (0.7.5-1) ... Setting up python-pygments (2.3.1+dfsg-1+deb10u2) ... Setting up libunwind8:amd64 (1.2.1-10~deb10u1) ... Setting up python-ptyprocess (0.6.0-1) ... Setting up libcarp-always-perl (0.16-1) ... Setting up fonts-crosextra-caladea (20130214-2) ... Removing obsolete conffile /etc/fonts/conf.avail/30-0-google-crosextra-caladea-fontconfig.conf ... Removing obsolete conffile /etc/fonts/conf.avail/62-google-crosextra-caladea-fontconfig.conf ... Setting up krb5-locales (1.17-3+deb10u4) ... Setting up libxz-java (1.8-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libaio1:amd64 (0.3.112-3) ... Setting up libqtcore4:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Setting up wise-data (2.4.1-21) ... Setting up libgd-graph-perl (1.54~ds-2) ... Setting up phyutility (2.7.3+dfsg-2) ... Setting up libsort-naturally-perl (1.03-2) ... Setting up publicsuffix (20220811.1734-0+deb10u1) ... Setting up libepoxy0:amd64 (1.5.3-0.1) ... Setting up fasttree (2.1.10-2) ... Setting up autotools-dev (20180224.1) ... Setting up bzip2-doc (1.0.6-9.2~deb10u1) ... Setting up libapparmor1:amd64 (2.13.2-10) ... Setting up conservation-code (20110309.0-7) ... Setting up ant (1.10.5-2) ... Setting up liburi-perl (1.76-1) ... Setting up t1utils (1.41-3) ... Setting up fastdnaml (1.2.2-14) ... Setting up xz-utils (5.2.4-1+deb10u1) ... Setting up libjaxen-java (1.1.6-4) ... Setting up primer3 (2.4.0-2) ... Setting up libsnappy1v5:amd64 (1.1.7-1) ... Setting up libfakeroot:amd64 (1.23-1) ... Setting up wise (2.4.1-21) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up python-enum34 (1.1.6-2) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libapache-pom-java (18-1) ... Setting up glam2 (1064-5) ... Setting up python-renderpm:amd64 (3.5.13-1+deb10u1) ... Setting up fonts-croscore (20181227-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libijs-0.35:amd64 (0.35-14) ... Setting up imagemagick (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libdate-manip-perl (6.76-1) ... Setting up libalgorithm-diff-perl (1.19.03-2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up rubygems-integration (1.11+deb10u1) ... Setting up macs (2.1.2.1-1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up python-sympy-doc (1.3-2) ... Setting up libpotrace0:amd64 (1.15-1) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up shared-mime-info (1.10-1) ... Setting up libxkbcommon0:amd64 (0.8.2-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1+b3) ... Setting up libpcrecpp0v5:amd64 (2:8.39-12) ... Setting up libpcre32-3:amd64 (2:8.39-12) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libnet-http-perl (6.18-1) ... Setting up libapache2-reload-perl (0.13-2) ... Setting up librest-0.7-0:amd64 (0.8.1-1) ... Setting up rtax (0.984-6) ... Setting up last-align (963-2) ... Setting up libbambamc0 (0.0.50-3) ... Setting up libcrypt-rc4-perl (2.02-3) ... Setting up libtest-pod-perl (1.52-1) ... Setting up poa (2.0+20060928-7) ... Setting up libffi6:amd64 (3.2.1-9) ... Setting up python-decorator (4.3.0-1.1) ... Setting up fonts-sil-gentiumplus (5.000-2) ... Setting up libtext-format-perl (0.61-1) ... Setting up libjzlib-java (1.1.3-2) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up parsinsert (1.04-4) ... Setting up libpcre16-3:amd64 (2:8.39-12) ... Setting up libjsch-java (0.1.55-1) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up libcolord2:amd64 (1.4.3-4) ... Setting up libthai-data (0.1.28-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Setting up liblzma-dev:amd64 (5.2.4-1+deb10u1) ... Setting up xml-core (0.18+nmu1) ... Setting up libbcprov-java (1.60-1) ... Setting up pdb2pqr (2.1.1+dfsg-5) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up tree-puzzle-doc (5.2-11) ... Setting up libsquizz (0.99d+dfsg-2) ... Setting up perm (0.4.0-4) ... Setting up python-subprocess32 (3.5.3-1) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gff2ps (0.98l-2) ... Setting up libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up fonts-freefont-ttf (20120503-9) ... Setting up ruby-minitest (5.11.3-1) ... Setting up libvorbis0a:amd64 (1.3.6-2) ... Setting up python-traitlets (4.3.2-1) ... Setting up lynx-common (2.8.9rel.1-3+deb10u1) ... Installing new version of config file /etc/lynx/lynx.cfg ... Setting up libzzip-0-13:amd64 (0.13.62-3.2+deb10u1) ... Setting up fonts-sil-gentium (20081126:1.03-2) ... Setting up mustang (3.2.3-3) ... Setting up clustalw (2.1+lgpl-6) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up manpages-dev (4.16-2) ... Setting up libatk-wrapper-java (0.33.3-22+deb10u1) ... Setting up libfile-mimeinfo-perl (0.29-1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libbio-perl-run-perl (1.7.2-4) ... Setting up dh-python (3.20190308) ... Setting up liblist-someutils-perl (0.56-1) ... Setting up cron (3.0pl1-134+deb10u1) ... Installing new version of config file /etc/crontab ... Installing new version of config file /etc/init.d/cron ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libxpp3-java (1.1.4c-3) ... Setting up fonts-sil-gentium-basic (1.102-1) ... Setting up libpostscript-perl (0.06-3) ... Setting up python-mpmath (1.1.0-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up minia (1.6906-2) ... Setting up lua-lpeg:amd64 (1.0.0-2) ... Setting up autodock (4.2.6-6) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up fastx-toolkit (0.0.14-6) ... Setting up libtree-dagnode-perl (1.31-1) ... Setting up xdg-user-dirs (0.17-2) ... Removing obsolete conffile /etc/X11/Xsession.d/60xdg-user-dirs-update ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libxpp2-java (2.1.10-8) ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up isympy-common (1.3-2) ... Setting up gff2aplot (2.0-11) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libhamcrest-java (1.3-9) ... Setting up libqt4-xml:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libjellyfish-2.0-2:amd64 (2.2.10-2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up fonts-circos-symbols (0.69.6+dfsg-2) ... Setting up hyphy-common (2.3.14+dfsg-1) ... Setting up squizz (0.99d+dfsg-2) ... Setting up libcommons-cli-java (1.4-1) ... Setting up libclass-inspector-perl (1.32-1) ... Setting up liblzo2-2:amd64 (2.10-0.1) ... Setting up r-doc-html (3.5.2-1) ... Setting up libwrap0:amd64 (7.6.q-28) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libole-storage-lite-perl (0.19-2+deb10u1) ... Setting up gasic (0.0.r19-4) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libspiffy-perl (0.46-1) ... Setting up libmime-tools-perl (5.509-1) ... Setting up python-gmpy:amd64 (1.17-4) ... Setting up fonts-lyx (2.3.2-1) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libtask-weaken-perl (1.06-1) ... Setting up python-pygraphviz (1.5-1) ... Setting up libwayland-server0:amd64 (1.16.0-1) ... Setting up netbase (5.6) ... Installing new version of config file /etc/services ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libapache-dbi-perl (1.12-2) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up libdom4j-java (2.1.1-2) ... Setting up ssake (4.0-2) ... Setting up mariadb-common (1:10.3.34-0+deb10u1) ... Setting up libpaper1:amd64 (1.1.28) ... Setting up libpaper-utils (1.1.28) ... Setting up python-yaml (3.13-2) ... Setting up libpcre3-dev:amd64 (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libmath-spline-perl (0.02-2) ... Setting up pynast (1.2.2-4) ... Setting up python-prompt-toolkit (1.0.15-1) ... Setting up python-chardet (3.0.4-3) ... Setting up tex-common (6.11) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up python-matplotlib-data (3.0.2-2) ... Installing new version of config file /etc/matplotlibrc ... Setting up libglpk40:amd64 (4.65-2) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up libeigen3-dev (3.3.7-1) ... Setting up libsprng2 (2.0a-12) ... Setting up libsnappy-jni (1.1.7.2-1) ... Setting up ant-optional (1.10.5-2) ... Setting up java-wrappers (0.3) ... Processing triggers for libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Setting up dialign-tx (1.0.2-12) ... Setting up libwayland-client0:amd64 (1.16.0-1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libglpk-java:amd64 (1.12.0-1) ... Setting up libflac8:amd64 (1.3.2-3+deb10u2) ... Setting up neobio (0.0.20030929-4) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u5) ... Setting up tree-puzzle (5.2-11) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libhttp-daemon-perl (6.01-3) ... Setting up preview-latex-style (11.91-2) ... Setting up mipe (1.1-7) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up python-pexpect (4.6.0-1) ... Setting up libbiojava1.7-java (1:1.7.1-8) ... Setting up file (1:5.35-4+deb10u2) ... Setting up fakeroot (1.23-1) ... Setting up tcpd (7.6.q-28) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libcgi-fast-perl (1:2.13-1) ... Setting up smalt (0.7.6-8) ... Setting up libio-all-perl (0.87-1) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... Setting up libcupsfilters1:amd64 (1.21.6-5) ... Setting up libcommons-parent-java (43-1) ... Setting up python-dateutil (2.7.3-3) ... Setting up cain-solvers (1.10+dfsg-3) ... Setting up libxerces2-java (2.12.0-1) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up python-gobject-2 (2.28.6-13+b1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up dpkg-dev (1.19.8) ... Setting up ant-contrib (1.0~b3+svn177-10) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up libjdom1-java (1.1.3-2) ... Setting up glpk-utils (4.65-2) ... Setting up libcommons-compress-java (1.18-2+deb10u1) ... Setting up libsnappy-java (1.1.7.2-1) ... Setting up libxml-filter-buffertext-perl (1.01-6) ... Setting up junit4 (4.12-8) ... Setting up tcl8.6 (8.6.9+dfsg-2) ... Setting up jellyfish (2.2.10-2) ... Setting up libxml-dom-xpath-perl (0.14-3) ... Setting up bioperl-run (1.7.2-4) ... Setting up liblist-allutils-perl (0.15-1) ... Setting up libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up python-sympy (1.3-2) ... Setting up libpng-dev:amd64 (1.6.36-6) ... Setting up dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libvorbisenc2:amd64 (1.3.6-2) ... Setting up libcommons-codec-java (1.11-1) ... Setting up libxml-sax-writer-perl (0.57-1) ... Setting up libqtdbus4:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libwayland-cursor0:amd64 (1.16.0-1) ... Setting up libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up giira (0.0.20140625-2) ... Setting up cain (1.10+dfsg-3) ... Setting up circos (0.69.6+dfsg-2) ... Installing new version of config file /etc/circos/colors.conf ... Installing new version of config file /etc/circos/makehuesteps ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up cain-examples (1.10+dfsg-3) ... Setting up libxcb-xfixes0:amd64 (1.13.1-2) ... Setting up libsvg-graph-perl (0.02-3) ... Setting up ca-certificates-java (20190405) ... Installing new version of config file /etc/ca-certificates/update.d/jks-keystore ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libbiojava-java (1:1.7.1-8) ... Setting up libsoap-lite-perl (1.27-1) ... Setting up python-ipython (5.8.0-1+deb10u1) ... Setting up melting (5.2.0-1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up tcl (8.6.9+1) ... Setting up ipython (5.8.0-1+deb10u1) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up qdbus (4:4.8.7+dfsg-18+deb10u1) ... Setting up alien-hunter (1.7-7) ... Setting up libmsv-java (2009.1+dfsg1-6) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up xauth (1:1.0.10-1) ... Setting up libsndfile1:amd64 (1.0.28-6+deb10u1) ... Setting up circos-tools (0.23-1) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libxmlrpc-lite-perl (0.717-2) ... Setting up libcommons-jexl2-java (2.1.1-4) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libxcb-shape0:amd64 (1.13.1-2) ... Setting up embassy-domalign (0.1.660-3) ... Setting up embassy-domainatrix (0.1.660-3) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libqt4-dbus:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Setting up embassy-domsearch (1:0.1.660-3) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-14) ... Setting up libcommons-httpclient-java (3.1-15) ... Setting up libaudio2:amd64 (1.9.4-6) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libg20 (0.72-8+b1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libqtgui4:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Setting up qt-at-spi:amd64 (0.4.0-9) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up librsvg2-2:amd64 (2.44.10-2.1+deb10u3) ... Setting up libatspi2.0-0:amd64 (2.30.0-7) ... Setting up at-spi2-core (2.30.0-7) ... Installing new version of config file /etc/X11/Xsession.d/90qt-a11y ... Setting up libxss1:amd64 (1:1.2.3-1) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Setting up libcairo-gobject2:amd64 (1.16.0-4+deb10u1) ... Setting up dvipng (1.15-1.1) ... Setting up rnahybrid (2.1.2-5) ... Setting up librsvg2-common:amd64 (2.44.10-2.1+deb10u3) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up genometools-common (1.5.10+ds-3) ... Setting up libelk0 (3.99.8-4.2+b1) ... Setting up python-cairo:amd64 (1.16.2-1+b1) ... Setting up libaxis-java (1.4-28) ... Setting up notification-daemon (3.20.0-4) ... Setting up adwaita-icon-theme (3.30.1-1) ... Setting up libgtk2.0-0:amd64 (2.24.32-3) ... Setting up libjets3t-java (0.8.1+dfsg-4) ... Setting up libgail18:amd64 (2.24.32-3) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up libgail-common:amd64 (2.24.32-3) ... Setting up gnome-icon-theme (3.12.0-3) ... Setting up libglade2-0:amd64 (1:2.6.4-2+b1) ... Setting up libatk-wrapper-java-jni:amd64 (0.33.3-22+deb10u1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... Setting up blt (2.5.3+dfsg-4) ... Setting up libgtk2.0-bin (2.24.32-3) ... Setting up tk8.6 (8.6.9-2) ... Setting up tk (8.6.9+1) ... Setting up python-tk (2.7.16-2) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.7.2) ... Setting up tasksel (3.53) ... Setting up tasksel-data (3.53) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Processing triggers for menu (2.1.47+b1) ... 11m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'upgrade'] 11m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-yf', 'dist-upgrade'] 21m3.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: ant-contrib biomaj cdbs default-mysql-client dh-python exim4 fonts-roboto-hinted gnupg-agent guile-2.0-libs isympy isympy-common libaio1 libann0 libart-2.0-2 libaudio2 libaxis-java libbamtools2.4.0 libbcprov-java libblas-common libboost-filesystem1.62.0 libboost-iostreams1.62.0 libboost-mpi1.62.0 libboost-program-options1.62.0 libboost-regex1.62.0 libboost-serialization1.62.0 libboost-system1.62.0 libboost-thread1.62.0 libcommons-discovery-java libcommons-httpclient-java libconfig-inifiles-perl libegl1-mesa libgdbm3 libgflags2v5 libglade2-0 libgromacs2 libhpdf-2.2.1 libhts1 libicu4j-java libicu57 libilmbase12 libintellij-annotations-java libjava-xmlbuilder-java libjcommon-java libjemalloc1 libjetbrains-annotations-java libjets3t-java libjgoodies-common-java libjgoodies-forms-java libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickwand-6.q16-3 libmbedcrypto0 libmbedtls10 libmng1 libmysql-java libngs-sdk1 libopenexr22 libopenmpi2 libperl5.24 libpoppler64 libprocps6 libprotobuf10 libpython3.5-minimal libpython3.5-stdlib libqt4-dbus libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libreadline5 libruby2.3 libsaxonhe-java libssl1.0.2 libstaden-read11 libsuitesparseconfig4 libsynctex1 libterm-readkey-perl libtinfo-dev libtxc-dxtn-s2tc libunistring0 libwayland-egl1-mesa libwebpmux2 libwsdl4j-java libwxgtk3.0-0v5 libxerces-c3.1 mariadb-client-10.3 mariadb-client-core-10.3 prosper python-cairo python-functools32 python-glade2 python-gtk2 python-imaging python-matplotlib-data python3.5 python3.5-minimal qdbus qt-at-spi qtchooser qtcore4-l10n r-bioc-biocgenerics r-bioc-limma rename ruby2.3 sgml-base tcpd texlive-generic-extra ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: filo libcurl3 libgsl2 libhdf5-100 libllvm3.9 libmariadbclient18 libsensors4 mariadb-client-10.1 mariadb-client-core-10.1 r-bioc-edger The following NEW packages will be installed: autoconf automake binutils-common binutils-x86-64-linux-gnu bsdmainutils cpp-8 cwltool dbus-user-session dmsetup e2fsprogs-l10n fdisk fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-glyphicons-halflings fonts-go fonts-mathjax fonts-noto-core fonts-noto-ui-core fonts-open-sans fonts-roboto-unhinted g++-8 gatb-core gcc-7-base gcc-8 gcc-8-base gdal-data gfortran-8 gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm guile-2.2-libs ibverbs-providers libactivation-java libalgorithm-c3-perl libaopalliance-java libargon2-1 libargs4j-java libarmadillo9 libarpack2 libasan5 libasm-java libb-hooks-endofscope-perl libb-hooks-op-check-perl libbamtools2.5.1 libbarclay-java libbinutils libboost-atomic1.67.0 libboost-filesystem1.67.0 libboost-iostreams1.67.0 libboost-mpi1.67.0 libboost-program-options1.67.0 libboost-regex1.67.0 libboost-serialization1.67.0 libboost-system1.67.0 libboost-thread1.67.0 libbrotli1 libc-ares2 libcaf-openmpi-3 libcapture-tiny-perl libcdi-api-java libcglib-java libcharls2 libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libcoarrays-dev libcoarrays-openmpi-dev libcodemodel-java libcom-err2 libcommons-io-java libcommons-lang3-java libcryptsetup12 libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdata-optlist-perl libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevmapper1.02.1 libdist-checkconflicts-perl libdrm-common libdtd-parser-java libdynaloader-functions-perl libegl-mesa0 libegl1 libel-api-java libemail-date-format-perl libepsilon1 libeval-closure-perl libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexception-class-perl libext2fs2 libfastinfoset-java libfindbin-libs-perl libfreemarker-java libfreexl1 libfyba0 libgatbcore2 libgatk-native-bindings-java libgcc-8-dev libgdal20 libgdbm-compat4 libgdbm6 libgdk-pixbuf2.0-bin libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgflags2.2 libgfortran-8-dev libgfortran5 libgkl-java libgkl-jni libgl1 libglvnd0 libglx-mesa0 libglx0 libgnutls-dane0 libgoogle-gson-java libgpg-error-l10n libgromacs4 libgsl23 libgslcblas0 libguice-java libhawtjni-runtime-java libhdf4-0-alt libhdf5-103 libheif1 libhpdf-2.3.0 libhts2 libhttpclient-java libhttpcore-java libhwloc-dev libibverbs-dev libicu4j-java libicu63 libilmbase23 libimagequant0 libintellij-annotations-java libip4tc0 libipc-shareable-perl libisl19 libistack-commons-java libjansi-java libjansi-native-java libjansson4 libjaxb-api-java libjaxb-java libjetbrains-annotations-java libjoptsimple-java libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery-datatables libjs-jquery-selectize.js libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjson-c3 libjsoup-java libjsp-api-java libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkmod2 liblab-gamut1 liblightcouch-java libllvm7 liblmdb0 liblog-dispatch-perl liblog-log4perl-perl liblog4j2-java libltdl-dev libmagickcore-6.q16-6 libmagickcore-6.q16-6-extra libmagickwand-6.q16-6 libmail-sendmail-perl libmariadb3 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmime-charset-perl libmime-lite-perl libmime-types-perl libminizip1 libmongodb-java libmpfr6 libmro-compat-perl libnamespace-autoclean-perl libnamespace-clean-perl libncurses-dev libncurses6 libncursesw6 libnetcdf13 libngs-sdk2 libnl-3-dev libnl-route-3-dev libnode64 libnss-systemd libnuma-dev libodbc1 libogdi3.2 libopenexr23 libopenmpi-dev libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpam-systemd libparams-util-perl libparams-validationcompiler-perl libperl5.28 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpmix2 libpoppler82 libprocps7 libproj13 libprotobuf17 libpsm2-2 libpvm3 libpython2-dev libpython2-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libref-util-perl libref-util-xs-perl librngom-java libruby2.5 libseccomp2 libsensors-config libsensors5 libservlet-api-java libsisu-guice-java libsisu-inject-java libsisu-ioc-java libsisu-plexus-java libslf4j-java libsombok3 libspatialite7 libspecio-perl libsquid1 libstaden-read13 libstax-ex-java libstdc++-8-dev libstreambuffer-java libsub-exporter-perl libsub-identify-perl libsub-install-perl libsub-quote-perl libsub-uplevel-perl libsuitesparseconfig5 libsuperlu5 libsynctex2 libsys-hostname-long-perl libteckit0 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtexlua53 libtext-diff-perl libtinfo6 libtool libtxw2-java libubsan1 libunbound8 libunicode-linebreak-perl libunistring2 liburiparser1 libuv1 libvariable-magic-perl libwagon-http-java libwagon-provider-api-java libwayland-egl1 libwebpmux3 libwebsocket-api-java libwoff1 libwxgtk3.0-gtk3-0v5 libx265-165 libxerces-c3.2 libxsom-java libxxhash0 libzstd1 littler m4 mariadb-client-10.3 mariadb-client-core-10.3 node-highlight.js node-normalize.css nodejs nodejs-doc odbcinst odbcinst1debian2 openjdk-11-jre openjdk-11-jre-headless openssh-client pandoc pandoc-data perl-modules-5.28 proj-bin proj-data pvm python-backports.functools-lru-cache python-configparser python-future python-gdal python-kiwisolver python-matplotlib2-data python-olefile python-scandir python2 python2-dev python2-minimal python3-biomaj3-cli python3-biomaj3-core python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-elasticsearch python3-future python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-olefile python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal r-bioc-biocgenerics r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-blob r-cran-cli r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dbitest r-cran-desc r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-filehash r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lazyeval r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-markdown r-cran-memoise r-cran-mime r-cran-mockery r-cran-mockr r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-praise r-cran-prettyunits r-cran-promises r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-tikzdevice r-cran-tinytex r-cran-utf8 r-cran-withr r-cran-xfun r-cran-xml2 r-cran-xtable r-cran-yaml ruby-xmlrpc ruby2.5 systemd systemd-sysv texlive-fonts-extra-links texlive-plain-generic xfonts-encodings xfonts-utils The following packages will be upgraded: abyss aevol altree amap-align ampliconnoise anfo apache2-bin apt autodock-vina bamtools bash bc bedtools beignet-opencl-icd binutils bioperl biosquid bowtie build-essential ca-certificates cassiopee clonalframe clustalo coreutils cpp dash dconf-gsettings-backend dconf-service default-jre default-jre-headless default-mysql-client dirmngr discosnp disulfinder dnaclust dpkg dssp e2fslibs e2fsprogs emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light fastqc ffindex flexbar fonts-lmodern fonts-noto-hinted fonts-roboto-hinted freecontact g++ gawk gcc genometools gfortran ghostscript glib-networking glib-networking-common glib-networking-services gnupg gnupg-agent gpgv graphviz gromacs gromacs-data gtk-update-icon-cache guile-2.0-libs hhsuite hhsuite-data hmmer hyphy-mpi icu-devtools imagemagick-6.q16 infernal kissplice libace-perl libalgorithm-diff-xs-perl libamd2 libanfo0 libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg5.0 libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatlas3-base libatomic1 libbio-perl-perl libbit-vector-perl libblas-dev libblas3 libblkid1 libbsd-resource-perl libbsd0 libc-bin libc-dev-bin libc6 libc6-dev libcassie1v5 libcc1-0 libcilkrts5 libclass-xsaccessor-perl libclone-perl libcolamd2 libcomerr2 libconvert-binary-c-perl libcups2 libcupsimage2 libcurl3-gnutls libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdconf1 libdevel-caller-perl libdevel-lexalias-perl libdjvulibre21 libdrm-amdgpu1 libdrm2 libedit2 libegl1-mesa libexpat1 libexpat1-dev libfabric1 libfcgi-perl libfdisk1 libffindex0 libfile-fcntllock-perl libfreecontact0v5 libfuse2 libgbm1 libgcc1 libgd-perl libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls30 libgomp1 libgoogle-glog0v5 libgpg-error0 libgs9 libgs9-common libgsasl7 libgssapi-krb5-2 libgtk-3-0 libgtk-3-bin libgvc6 libharfbuzz-icu0 libhmsbeagle1v5 libhtml-parser-perl libhtsjdk-java libibverbs1 libicu-dev libidn2-0 libio-pty-perl libio-socket-ssl-perl libipc-sharelite-perl libitm1 libk5crypto3 libkdf5-2 libkpathsea6 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 liblist-moreutils-perl liblocale-gettext-perl liblsan0 libmail-java libmailutils5 libmath-random-mt-perl libmath-tamuanova-perl libmbedtls-dev libmbedx509-0 libmoo-perl libmount1 libmpc3 libmpx2 libncbi-vdb2 libncbi-wvdb2 libncbi6 libncurses5 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-ssleay-perl libngs-java libngs-sdk-dev libossp-uuid-perl libp11-kit0 libpadwalker-perl libpam-modules libpam-modules-bin libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparams-validate-perl libperlio-gzip-perl libpicard-java libpopt0 libpq5 libpsl5 libptexenc1 libpulse0 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libquadmath0 librdmacm1 libreadline-dev libreadline5 libreadline7 libsaxonhe-java libscalar-list-utils-perl libservlet3.1-java libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++6 libsub-name-perl libsystemd0 libtamuanova-0.2 libtbb2 libterm-readkey-perl libtexlua52 libtexluajit2 libtext-iconv-perl libtiff5 libtinfo-dev libtinfo5 libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libudev1 libunicode-map-perl libuuid1 libwayland-egl1-mesa libwww-perl libwxbase3.0-0v5 libwxgtk3.0-0v5 libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libxshmfence1 libyaml-libyaml-perl lmodern login loki lynx mailutils mailutils-common make mapsembler2 maq med-cloud med-config med-tasks mira-assembler mothur mount muscle ncbi-blast+ ncbi-data ncurses-base ncurses-bin openmpi-bin openmpi-common openssl perl perl-base perl-doc perl-tk phyml picard-tools pinentry-curses prank prime-phylo probalign probcons procps proda prosper psmisc python python-biopython python-biopython-doc python-cogent python-dev python-glade2 python-gtk2 python-matplotlib python-minimal python-mpi4py python-networkx python-numpy python-pathlib2 python-pil python-pyglet python-pysam python-scipy python-wxgtk3.0 python2.7 python2.7-dev python2.7-minimal python3 python3-biopython python3-minimal python3-numpy python3-pil python3-renderpm python3-reportlab python3-reportlab-accel r-base-core r-base-dev r-bioc-hilbertvis r-bioc-limma r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-g.data r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-multicore r-cran-nlme r-cran-nnet r-cran-permute r-cran-pvclust r-cran-qtl r-cran-rpart r-cran-spatial r-cran-survival r-cran-vegan r-other-mott-happy.hbrem r-recommended raster3d rename ruby samtools seqan-apps sra-toolkit staden-io-lib-utils sysstat t-coffee tabix tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc theseus tigr-glimmer tm-align tophat ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis util-linux x11-utils x11-xserver-utils xterm zalign 400 upgraded, 470 newly installed, 10 to remove and 0 not upgraded. Need to get 2421 MB of archives. After this operation, 2048 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:5 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:17 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get:24 http://deb.debian.org/debian buster/main amd64 sysstat amd64 12.0.3-2 [562 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u4 [155 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:32 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libwxgtk3.0-0v5 amd64 3.0.4+dfsg-8 [4398 kB] Get:34 http://deb.debian.org/debian buster/main amd64 python-pyglet all 1.3.0-1 [1422 kB] Get:35 http://deb.debian.org/debian buster/main amd64 x11-utils amd64 7.7+4 [202 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-glx amd64 18.3.6-2+deb10u1 [47.4 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:42 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:45 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:46 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:50 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:51 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:58 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:59 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:60 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:61 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:62 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:63 http://deb.debian.org/debian buster/main amd64 perl-doc all 5.28.1-6+deb10u1 [7654 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b2 [38.0 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libscalar-list-utils-perl amd64 1:1.50-1+b1 [56.4 kB] Get:66 http://deb.debian.org/debian buster/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libdbi-perl amd64 1.642-1+deb10u2 [775 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libfcgi-perl amd64 0.78-2+b3 [39.0 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get:83 http://deb.debian.org/debian buster/main amd64 ampliconnoise amd64 1.29-8 [476 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libtamuanova-0.2 amd64 0.2-4+b1 [8162 B] Get:85 http://deb.debian.org/debian buster/main amd64 theseus amd64 3.3.0-8 [393 kB] Get:86 http://deb.debian.org/debian buster/main amd64 clonalframe amd64 1.2-9 [49.8 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libgslcblas0 amd64 2.5+dfsg-6 [101 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libgsl23 amd64 2.5+dfsg-6 [880 kB] Get:89 http://deb.debian.org/debian buster/main amd64 altree amd64 1.3.1-7+b1 [337 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:91 http://deb.debian.org/debian buster/main amd64 guile-2.2-libs amd64 2.2.4+1-2+deb10u1 [4968 kB] Get:92 http://deb.debian.org/debian buster/main amd64 mailutils amd64 1:3.5-4 [585 kB] Get:93 http://deb.debian.org/debian buster/main amd64 mailutils-common all 1:3.5-4 [689 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libmailutils5 amd64 1:3.5-4 [880 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1 [340 kB] Get:96 http://deb.debian.org/debian buster/main amd64 emboss-data all 6.6.0+dfsg-7 [61.1 MB] Get:97 http://deb.debian.org/debian buster/main amd64 emboss amd64 6.6.0+dfsg-7+b1 [1073 kB] Get:98 http://deb.debian.org/debian buster/main amd64 emboss-lib amd64 6.6.0+dfsg-7+b1 [2786 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libmariadb3 amd64 1:10.3.34-0+deb10u1 [173 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libdbd-mysql-perl amd64 4.050-2 [121 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libpadwalker-perl amd64 2.3-1+b1 [20.1 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libconvert-binary-c-perl amd64 0.78-1+b4 [272 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:105 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:109 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:110 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:111 http://deb.debian.org/debian buster/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libbit-vector-perl amd64 7.4-1+b5 [146 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libace-perl amd64 1.92-8+b1 [287 kB] Get:116 http://deb.debian.org/debian buster/main amd64 perl-tk amd64 1:804.033-2+b3 [1952 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libtext-iconv-perl amd64 1.7-5+b7 [15.4 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libxml-libxslt-perl amd64 1.96-1+b1 [47.5 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libbsd-resource-perl amd64 1.2911-1+b3 [33.8 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-xs-perl amd64 0.04-5+b1 [11.8 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libfile-fcntllock-perl amd64 0.22-3+b5 [35.4 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libparams-validate-perl amd64 1.29-1+b1 [67.6 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libterm-readkey-perl amd64 2.38-1 [27.4 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libgd-perl amd64 2.71-2 [140 kB] Get:125 http://deb.debian.org/debian buster/main amd64 libdevel-caller-perl amd64 2.06-2+b1 [12.1 kB] Get:126 http://deb.debian.org/debian buster/main amd64 libunicode-map-perl amd64 0.112-12+b1 [145 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libdbd-pg-perl amd64 3.7.4-3 [207 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libtype-tiny-xs-perl amd64 0.014-1+b1 [24.4 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libnet-dbus-perl amd64 1.1.0-5+b1 [181 kB] Get:130 http://deb.debian.org/debian buster/main amd64 libdate-calc-xs-perl amd64 6.4-1+b4 [55.1 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b7 [28.7 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+deb10u1 [308 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libperlio-gzip-perl amd64 0.19-1+b5 [17.4 kB] Get:135 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:136 http://deb.debian.org/debian buster/main amd64 libapache2-mod-perl2 amd64 2.0.10-3 [885 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libdbd-sqlite3-perl amd64 1.62-3 [177 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libmath-tamuanova-perl amd64 1.0.2-2+b7 [13.5 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libipc-sharelite-perl amd64 0.17-4+b3 [24.6 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libmath-random-mt-perl amd64 1.17-1+b5 [15.3 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libdevel-lexalias-perl amd64 0.05-2+b1 [9068 B] Get:142 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:143 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:146 http://deb.debian.org/debian buster/main amd64 clustalo amd64 1.2.4-2 [265 kB] Get:147 http://deb.debian.org/debian buster/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libblas-dev amd64 3.8.0-2 [154 kB] Get:149 http://deb.debian.org/debian buster/main amd64 liblapack-dev amd64 3.8.0-2 [2140 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libatlas3-base amd64 3.10.3-8 [3747 kB] Get:152 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libncurses5-dev amd64 6.1+20181013-2+deb10u2 [948 B] Get:154 http://deb.debian.org/debian buster/main amd64 libtinfo-dev amd64 6.1+20181013-2+deb10u2 [940 B] Get:155 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:159 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:160 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:161 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:162 http://deb.debian.org/debian buster/main amd64 libgsasl7 amd64 1.8.0-8+deb10u1 [207 kB] Get:163 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:164 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get:166 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:167 http://deb.debian.org/debian buster/main amd64 python-cogent amd64 1.9-14 [2483 kB] Get:168 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get:169 http://deb.debian.org/debian buster/main amd64 python-pysam amd64 0.15.2+ds-2 [1629 kB] Get:170 http://deb.debian.org/debian buster/main amd64 python-scipy amd64 1.1.0-7 [10.1 MB] Get:171 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:174 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:175 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get:176 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:177 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:178 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:181 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:182 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get:184 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get:185 http://deb.debian.org/debian buster/main amd64 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get:186 http://deb.debian.org/debian buster/main amd64 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get:187 http://deb.debian.org/debian buster/main amd64 python-kiwisolver amd64 1.0.1-2+b1 [67.3 kB] Get:188 http://deb.debian.org/debian buster/main amd64 python-matplotlib amd64 2.2.3-6 [5073 kB] Get:189 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:190 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:191 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:192 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get:193 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libpq5 amd64 11.16-0+deb10u1 [172 kB] Get:195 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:197 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:198 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get:200 http://deb.debian.org/debian buster/main amd64 libaprutil1-ldap amd64 1.6.1-4 [16.8 kB] Get:201 http://deb.debian.org/debian buster/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-4 [18.7 kB] Get:202 http://deb.debian.org/debian buster/main amd64 libaprutil1 amd64 1.6.1-4 [91.8 kB] Get:203 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get:204 http://deb.debian.org/debian buster/main amd64 r-cran-pvclust all 2.0-0-4 [180 kB] Get:205 http://deb.debian.org/debian buster/main amd64 r-cran-cluster amd64 2.0.7-1-1+b3 [531 kB] Get:206 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get:207 http://deb.debian.org/debian buster/main amd64 r-bioc-hilbertvis amd64 1.40.0-1 [982 kB] Get:208 http://deb.debian.org/debian buster/main amd64 r-bioc-biocgenerics all 0.28.0-2 [644 kB] Get:209 http://deb.debian.org/debian buster/main amd64 r-bioc-limma amd64 3.38.3+dfsg-1 [1662 kB] Get:210 http://deb.debian.org/debian buster/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get:211 http://deb.debian.org/debian buster/main amd64 r-cran-survival amd64 2.43-3-1 [4637 kB] Get:212 http://deb.debian.org/debian buster/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get:213 http://deb.debian.org/debian buster/main amd64 r-cran-spatial amd64 7.3-11-2+b2 [127 kB] Get:214 http://deb.debian.org/debian buster/main amd64 r-cran-rpart amd64 4.1-13-1+b1 [890 kB] Get:215 http://deb.debian.org/debian buster/main amd64 r-cran-qtl amd64 1.44-9-1 [5534 kB] Get:216 http://deb.debian.org/debian buster/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get:217 http://deb.debian.org/debian buster/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get:218 http://deb.debian.org/debian buster/main amd64 r-cran-nnet amd64 7.3-12-2+b2 [111 kB] Get:219 http://deb.debian.org/debian buster/main amd64 r-cran-kernsmooth amd64 2.23-15-3+b4 [90.6 kB] Get:220 http://deb.debian.org/debian buster/main amd64 r-cran-class amd64 7.3-15-1 [86.6 kB] Get:221 http://deb.debian.org/debian buster/main amd64 r-cran-foreign amd64 0.8.71-1 [245 kB] Get:222 http://deb.debian.org/debian buster/main amd64 r-cran-permute all 0.9-4-3 [513 kB] Get:223 http://deb.debian.org/debian buster/main amd64 r-cran-vegan amd64 2.5-4+dfsg-3 [3438 kB] Get:224 http://deb.debian.org/debian buster/main amd64 r-cran-codetools all 0.2-16-1 [90.1 kB] Get:225 http://deb.debian.org/debian buster/main amd64 r-cran-boot all 1.3-20-2 [619 kB] Get:226 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:227 http://deb.debian.org/debian buster/main amd64 glib-networking amd64 2.58.0-2+deb10u2 [54.6 kB] Get:228 http://deb.debian.org/debian buster/main amd64 glib-networking-services amd64 2.58.0-2+deb10u2 [13.7 kB] Get:229 http://deb.debian.org/debian buster/main amd64 glib-networking-common all 2.58.0-2+deb10u2 [59.5 kB] Get:230 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:231 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:232 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:233 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:234 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:235 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:236 http://deb.debian.org/debian buster/main amd64 libjansson4 amd64 2.12-1 [38.0 kB] Get:237 http://deb.debian.org/debian buster/main amd64 apache2-bin amd64 2.4.38-3+deb10u8 [1309 kB] Get:238 http://deb.debian.org/debian buster/main amd64 libncurses5 amd64 6.1+20181013-2+deb10u2 [96.2 kB] Get:239 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:240 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:241 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:242 http://deb.debian.org/debian buster/main amd64 libfuse2 amd64 2.9.9-1+deb10u1 [128 kB] Get:243 http://deb.debian.org/debian buster/main amd64 sra-toolkit amd64 2.9.3+dfsg-1+b1 [4932 kB] Get:244 http://deb.debian.org/debian buster/main amd64 mapsembler2 amd64 2.2.4+dfsg-3+b1 [248 kB] Get:245 http://deb.debian.org/debian buster/main amd64 libkdf5-2 amd64 2.9.3+dfsg-2 [17.0 kB] Get:246 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:247 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:248 http://deb.debian.org/debian buster/main amd64 libmbedtls-dev amd64 2.16.0-1 [488 kB] Get:249 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:250 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:251 http://deb.debian.org/debian buster/main amd64 libncbi-vdb2 amd64 2.9.3+dfsg-2 [1132 kB] Get:252 http://deb.debian.org/debian buster/main amd64 libncbi-wvdb2 amd64 2.9.3+dfsg-2 [1028 kB] Get:253 http://deb.debian.org/debian buster/main amd64 bc amd64 1.07.1-2+b1 [109 kB] Get:254 http://deb.debian.org/debian buster/main amd64 default-mysql-client all 1.0.5 [3532 B] Get:255 http://deb.debian.org/debian buster/main amd64 libreadline5 amd64 5.2+dfsg-3+b13 [120 kB] Get:256 http://deb.debian.org/debian buster/main amd64 mariadb-client-core-10.3 amd64 1:10.3.34-0+deb10u1 [5767 kB] Get:257 http://deb.debian.org/debian buster/main amd64 mariadb-client-10.3 amd64 1:10.3.34-0+deb10u1 [1144 kB] Get:258 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:259 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:260 http://deb.debian.org/debian buster/main amd64 libargon2-1 amd64 0~20171227-0.2 [19.6 kB] Get:261 http://deb.debian.org/debian buster/main amd64 dmsetup amd64 2:1.02.155-3 [90.8 kB] Get:262 http://deb.debian.org/debian buster/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-3 [141 kB] Get:263 http://deb.debian.org/debian buster/main amd64 libjson-c3 amd64 0.12.1+ds-2+deb10u1 [27.3 kB] Get:264 http://deb.debian.org/debian buster/main amd64 libcryptsetup12 amd64 2:2.1.0-5+deb10u2 [193 kB] Get:265 http://deb.debian.org/debian buster/main amd64 libip4tc0 amd64 1.8.2-4 [70.2 kB] Get:266 http://deb.debian.org/debian buster/main amd64 libkmod2 amd64 26-1 [52.7 kB] Get:267 http://deb.debian.org/debian buster/main amd64 systemd amd64 241-7~deb10u8 [3496 kB] Get:268 http://deb.debian.org/debian buster/main amd64 systemd-sysv amd64 241-7~deb10u8 [100 kB] Get:269 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:270 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:271 http://deb.debian.org/debian buster/main amd64 gawk amd64 1:4.2.1+dfsg-1 [660 kB] Get:272 http://deb.debian.org/debian buster/main amd64 libde265-0 amd64 1.0.3-1+b1 [240 kB] Get:273 http://deb.debian.org/debian buster/main amd64 libx265-165 amd64 2.9-4 [1041 kB] Get:274 http://deb.debian.org/debian buster/main amd64 libheif1 amd64 1.3.2-2~deb10u1 [127 kB] Get:275 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:276 http://deb.debian.org/debian buster/main amd64 libmagickcore-6.q16-6 amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [1786 kB] Get:277 http://deb.debian.org/debian buster/main amd64 libmagickwand-6.q16-6 amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [446 kB] Get:278 http://deb.debian.org/debian buster/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:279 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:280 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:281 http://deb.debian.org/debian buster/main amd64 python3-renderpm amd64 3.5.13-1+deb10u1 [76.8 kB] Get:282 http://deb.debian.org/debian buster/main amd64 python3-biopython amd64 1.73+dfsg-1 [1287 kB] Get:283 http://deb.debian.org/debian buster/main amd64 python3-reportlab-accel amd64 3.5.13-1+deb10u1 [35.3 kB] Get:284 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:285 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:286 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:287 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:288 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:289 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:290 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:291 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:292 http://deb.debian.org/debian buster/main amd64 python3-reportlab all 3.5.13-1+deb10u1 [541 kB] Get:293 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:294 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:295 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:296 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:297 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:298 http://deb.debian.org/debian buster/main amd64 libnss-systemd amd64 241-7~deb10u8 [205 kB] Get:299 http://deb.debian.org/debian buster/main amd64 libpam-systemd amd64 241-7~deb10u8 [209 kB] Get:300 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get:301 http://deb.debian.org/debian buster/main amd64 make amd64 4.2.1-1.2 [341 kB] Get:302 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get:303 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:304 http://deb.debian.org/debian buster/main amd64 abyss amd64 2.1.5-7 [2955 kB] Get:305 http://deb.debian.org/debian buster/main amd64 libboost-system1.67.0 amd64 1.67.0-13+deb10u1 [229 kB] Get:306 http://deb.debian.org/debian buster/main amd64 libboost-filesystem1.67.0 amd64 1.67.0-13+deb10u1 [261 kB] Get:307 http://deb.debian.org/debian buster/main amd64 aevol amd64 5.0-2+b1 [562 kB] Get:308 http://deb.debian.org/debian buster/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-1 [131 kB] Get:309 http://deb.debian.org/debian buster/main amd64 libpopt0 amd64 1.16-12 [49.4 kB] Get:310 http://deb.debian.org/debian buster/main amd64 libprotobuf17 amd64 3.6.1.3-2 [814 kB] Get:311 http://deb.debian.org/debian buster/main amd64 libanfo0 amd64 0.98-7 [276 kB] Get:312 http://deb.debian.org/debian buster/main amd64 anfo amd64 0.98-7 [118 kB] Get:313 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:314 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get:315 http://deb.debian.org/debian buster/main amd64 libboost-program-options1.67.0 amd64 1.67.0-13+deb10u1 [357 kB] Get:316 http://deb.debian.org/debian buster/main amd64 libboost-atomic1.67.0 amd64 1.67.0-13+deb10u1 [226 kB] Get:317 http://deb.debian.org/debian buster/main amd64 libboost-thread1.67.0 amd64 1.67.0-13+deb10u1 [268 kB] Get:318 http://deb.debian.org/debian buster/main amd64 autodock-vina amd64 1.1.2-5+b1 [232 kB] Get:319 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get:320 http://deb.debian.org/debian buster/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-3 [154 kB] Get:321 http://deb.debian.org/debian buster/main amd64 bamtools amd64 2.5.1+dfsg-3 [171 kB] Get:322 http://deb.debian.org/debian buster/main amd64 bedtools amd64 2.27.1+dfsg-4 [593 kB] Get:323 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-0 amd64 2.38.1+dfsg-1 [177 kB] Get:324 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [316 kB] Get:325 http://deb.debian.org/debian buster/main amd64 gtk-update-icon-cache amd64 3.24.5-1 [81.7 kB] Get:326 http://deb.debian.org/debian buster/main amd64 libatk1.0-0 amd64 2.30.0-2 [50.6 kB] Get:327 http://deb.debian.org/debian buster/main amd64 libatk1.0-data all 2.30.0-2 [145 kB] Get:328 http://deb.debian.org/debian buster/main amd64 libatk-bridge2.0-0 amd64 2.30.0-5 [61.6 kB] Get:329 http://deb.debian.org/debian buster/main amd64 libcupsimage2 amd64 2.2.10-6+deb10u6 [133 kB] Get:330 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u6 [325 kB] Get:331 http://deb.debian.org/debian buster/main amd64 libwayland-egl1-mesa amd64 18.3.6-2+deb10u1 [47.4 kB] Get:332 http://deb.debian.org/debian buster/main amd64 libwayland-egl1 amd64 1.16.0-1 [8204 B] Get:333 http://deb.debian.org/debian buster/main amd64 libgtk-3-0 amd64 3.24.5-1 [2580 kB] Get:334 http://deb.debian.org/debian buster/main amd64 libgtk-3-bin amd64 3.24.5-1 [114 kB] Get:335 http://deb.debian.org/debian buster/main amd64 libegl1-mesa amd64 18.3.6-2+deb10u1 [47.4 kB] Get:336 http://deb.debian.org/debian buster/main amd64 libgbm1 amd64 18.3.6-2+deb10u1 [67.8 kB] Get:337 http://deb.debian.org/debian buster/main amd64 libegl-mesa0 amd64 18.3.6-2+deb10u1 [135 kB] Get:338 http://deb.debian.org/debian buster/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get:339 http://deb.debian.org/debian buster/main amd64 beignet-opencl-icd amd64 1.3.2-6+b10 [14.5 MB] Get:340 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:341 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:342 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:343 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:344 http://deb.debian.org/debian buster/main amd64 bioperl all 1.7.2-3 [418 kB] Get:345 http://deb.debian.org/debian buster/main amd64 libbio-perl-perl all 1.7.2-3 [4553 kB] Get:346 http://deb.debian.org/debian buster/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:347 http://deb.debian.org/debian buster/main amd64 libdevel-stacktrace-perl all 2.0300-1 [28.0 kB] Get:348 http://deb.debian.org/debian buster/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:349 http://deb.debian.org/debian buster/main amd64 libtest-deep-perl all 1.128-1 [48.8 kB] Get:350 http://deb.debian.org/debian buster/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:351 http://deb.debian.org/debian buster/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:352 http://deb.debian.org/debian buster/main amd64 libtest-differences-perl all 0.65-1 [18.1 kB] Get:353 http://deb.debian.org/debian buster/main amd64 libsub-uplevel-perl all 0.2800-1 [16.3 kB] Get:354 http://deb.debian.org/debian buster/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:355 http://deb.debian.org/debian buster/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:356 http://deb.debian.org/debian buster/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:357 http://deb.debian.org/debian buster/main amd64 libpvm3 amd64 3.4.6-2 [90.1 kB] Get:358 http://deb.debian.org/debian buster/main amd64 libsquid1 amd64 1.9g+cvs20050121-11 [76.9 kB] Get:359 http://deb.debian.org/debian buster/main amd64 biosquid amd64 1.9g+cvs20050121-11 [79.6 kB] Get:360 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:361 http://deb.debian.org/debian buster/main amd64 libtbb2 amd64 2018~U6-4 [147 kB] Get:362 http://deb.debian.org/debian buster/main amd64 bowtie amd64 1.2.2+dfsg-4 [1670 kB] Get:363 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:364 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:365 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:366 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:367 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:368 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:369 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:370 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:371 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:372 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:373 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:374 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:375 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:376 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:377 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:378 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:379 http://deb.debian.org/debian buster/main amd64 build-essential amd64 12.6 [7576 B] Get:380 http://deb.debian.org/debian buster/main amd64 libboost-iostreams1.67.0 amd64 1.67.0-13+deb10u1 [249 kB] Get:381 http://deb.debian.org/debian buster/main amd64 libboost-regex1.67.0 amd64 1.67.0-13+deb10u1 [485 kB] Get:382 http://deb.debian.org/debian buster/main amd64 libboost-serialization1.67.0 amd64 1.67.0-13+deb10u1 [319 kB] Get:383 http://deb.debian.org/debian buster/main amd64 libgflags2.2 amd64 2.2.2-1 [76.7 kB] Get:384 http://deb.debian.org/debian buster/main amd64 libgoogle-glog0v5 amd64 0.3.5-1 [52.9 kB] Get:385 http://deb.debian.org/debian buster/main amd64 libcassie1v5 amd64 1.0.9-2 [39.7 kB] Get:386 http://deb.debian.org/debian buster/main amd64 cassiopee amd64 1.0.9-2 [17.9 kB] Get:387 http://deb.debian.org/debian buster/main amd64 python3-typed-ast amd64 1.3.1-1 [138 kB] Get:388 http://deb.debian.org/debian buster/main amd64 python3-mypy-extensions all 0.4.1-1 [5234 B] Get:389 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get:390 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:391 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:392 http://deb.debian.org/debian buster/main amd64 python3-mypy all 0.670-2 [781 kB] Get:393 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:394 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:395 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u4 [1163 kB] Get:396 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:397 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get:398 http://deb.debian.org/debian buster/main amd64 python3-isodate all 0.6.0-1 [24.9 kB] Get:399 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:400 http://deb.debian.org/debian buster/main amd64 python3-rdflib all 4.2.2-2 [258 kB] Get:401 http://deb.debian.org/debian buster/main amd64 python3-prov all 1.5.2-1 [94.4 kB] Get:402 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:403 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:404 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:405 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:406 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:407 http://deb.debian.org/debian buster/main amd64 python3-ruamel.yaml amd64 0.15.34-1+b1 [248 kB] Get:408 http://deb.debian.org/debian buster/main amd64 python3-cachecontrol all 0.11.7-1 [15.2 kB] Get:409 http://deb.debian.org/debian buster/main amd64 python3-lockfile all 1:0.12.2-2 [17.1 kB] Get:410 http://deb.debian.org/debian buster/main amd64 python3-mistune all 0.8.4-1 [16.1 kB] Get:411 http://deb.debian.org/debian buster/main amd64 python3-rdflib-jsonld all 0.4.0-4 [12.3 kB] Get:412 http://deb.debian.org/debian buster/main amd64 python3-typing-extensions all 3.7.2-1 [23.0 kB] Get:413 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:414 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:415 http://deb.debian.org/debian buster/main amd64 python3-schema-salad all 3.0.20181206233650-2 [272 kB] Get:416 http://deb.debian.org/debian buster/main amd64 python3-shellescape all 3.4.1-3 [4800 B] Get:417 http://deb.debian.org/debian buster/main amd64 cwltool all 1.0.20181217162649+dfsg-10 [176 kB] Get:418 http://deb.debian.org/debian buster/main amd64 dbus-user-session amd64 1.12.20-0+deb10u1 [94.5 kB] Get:419 http://deb.debian.org/debian buster/main amd64 dconf-gsettings-backend amd64 0.30.1-2 [28.9 kB] Get:420 http://deb.debian.org/debian buster/main amd64 dconf-service amd64 0.30.1-2 [36.4 kB] Get:421 http://deb.debian.org/debian buster/main amd64 libdconf1 amd64 0.30.1-2 [40.7 kB] Get:422 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.16+8-1~deb10u1 [37.3 MB] Get:423 http://deb.debian.org/debian buster/main amd64 default-jre amd64 2:1.11-71 [1044 B] Get:424 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get:425 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre amd64 11.0.16+8-1~deb10u1 [174 kB] Get:426 http://deb.debian.org/debian buster/main amd64 dirmngr amd64 2.2.12-1+deb10u2 [712 kB] Get:427 http://deb.debian.org/debian buster/main amd64 gnupg all 2.2.12-1+deb10u2 [715 kB] Get:428 http://deb.debian.org/debian buster/main amd64 gnupg-agent all 2.2.12-1+deb10u2 [393 kB] Get:429 http://deb.debian.org/debian buster/main amd64 gpgconf amd64 2.2.12-1+deb10u2 [510 kB] Get:430 http://deb.debian.org/debian buster/main amd64 pinentry-curses amd64 1.1.0-2 [64.5 kB] Get:431 http://deb.debian.org/debian buster/main amd64 gpg-agent amd64 2.2.12-1+deb10u2 [617 kB] Get:432 http://deb.debian.org/debian buster/main amd64 gnupg-utils amd64 2.2.12-1+deb10u2 [861 kB] Get:433 http://deb.debian.org/debian buster/main amd64 gpg amd64 2.2.12-1+deb10u2 [865 kB] Get:434 http://deb.debian.org/debian buster/main amd64 gpg-wks-client amd64 2.2.12-1+deb10u2 [485 kB] Get:435 http://deb.debian.org/debian buster/main amd64 gpg-wks-server amd64 2.2.12-1+deb10u2 [478 kB] Get:436 http://deb.debian.org/debian buster/main amd64 gpgsm amd64 2.2.12-1+deb10u2 [604 kB] Get:437 http://deb.debian.org/debian buster/main amd64 libgatbcore2 amd64 1.4.1+git20181225.44d5a44+dfsg-3 [1766 kB] Get:438 http://deb.debian.org/debian buster/main amd64 gatb-core amd64 1.4.1+git20181225.44d5a44+dfsg-3 [1912 kB] Get:439 http://deb.debian.org/debian buster/main amd64 discosnp amd64 2.3.0-2 [793 kB] Get:440 http://deb.debian.org/debian buster/main amd64 disulfinder amd64 1.2.11-8 [238 kB] Get:441 http://deb.debian.org/debian buster/main amd64 dnaclust amd64 3-6+b1 [87.5 kB] Get:442 http://deb.debian.org/debian buster/main amd64 dssp amd64 3.0.0-3+b1 [253 kB] Get:443 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:444 http://deb.debian.org/debian buster/main amd64 exim4 all 4.92-8+deb10u6 [7168 B] Get:445 http://deb.debian.org/debian buster/main amd64 exim4-daemon-light amd64 4.92-8+deb10u6 [584 kB] Get:446 http://deb.debian.org/debian buster/main amd64 exim4-base amd64 4.92-8+deb10u6 [1137 kB] Get:447 http://deb.debian.org/debian buster/main amd64 exim4-config all 4.92-8+deb10u6 [324 kB] Get:448 http://deb.debian.org/debian buster/main amd64 libunbound8 amd64 1.9.0-2+deb10u2 [462 kB] Get:449 http://deb.debian.org/debian buster/main amd64 libgnutls-dane0 amd64 3.6.7-4+deb10u8 [318 kB] Get:450 http://deb.debian.org/debian buster/main amd64 libpicard-java amd64 2.18.25+dfsg-2 [1423 kB] Get:451 http://deb.debian.org/debian buster/main amd64 picard-tools amd64 2.18.25+dfsg-2 [312 kB] Get:452 http://deb.debian.org/debian buster/main amd64 libfreemarker-java all 2.3.23-9 [1228 kB] Get:453 http://deb.debian.org/debian buster/main amd64 libjoptsimple-java all 5.0.4-3 [73.0 kB] Get:454 http://deb.debian.org/debian buster/main amd64 libgoogle-gson-java all 2.8.5-3 [225 kB] Get:455 http://deb.debian.org/debian buster/main amd64 libhttpcore-java all 4.4.11-1 [625 kB] Get:456 http://deb.debian.org/debian buster/main amd64 libhttpclient-java all 4.5.7-1+deb10u1 [721 kB] Get:457 http://deb.debian.org/debian buster/main amd64 liblightcouch-java all 0.0.6-1 [63.7 kB] Get:458 http://deb.debian.org/debian buster/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get:459 http://deb.debian.org/debian buster/main amd64 libslf4j-java all 1.7.25-3 [143 kB] Get:460 http://deb.debian.org/debian buster/main amd64 liblog4j2-java all 2.17.1-1~deb10u1 [2081 kB] Get:461 http://deb.debian.org/debian buster/main amd64 libbarclay-java all 2.1.0-3 [116 kB] Get:462 http://deb.debian.org/debian buster/main amd64 libgkl-jni amd64 0.8.5+dfsg-2 [182 kB] Get:463 http://deb.debian.org/debian buster/main amd64 libgkl-java amd64 0.8.5+dfsg-2 [18.2 kB] Get:464 http://deb.debian.org/debian buster/main amd64 libcommons-lang3-java all 3.8-2 [478 kB] Get:465 http://deb.debian.org/debian buster/main amd64 libgatk-native-bindings-java all 1.0.0-2 [7140 B] Get:466 http://deb.debian.org/debian buster/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:467 http://deb.debian.org/debian buster/main amd64 libargs4j-java all 2.33-1 [139 kB] Get:468 http://deb.debian.org/debian buster/main amd64 libcommons-io-java all 2.6-2+deb10u1 [213 kB] Get:469 http://deb.debian.org/debian buster/main amd64 libmaven-shared-utils-java all 3.3.0-1 [149 kB] Get:470 http://deb.debian.org/debian buster/main amd64 libgeronimo-annotation-1.3-spec-java all 1.0-1 [10.6 kB] Get:471 http://deb.debian.org/debian buster/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get:472 http://deb.debian.org/debian buster/main amd64 libguice-java all 4.2.1-1 [962 kB] Get:473 http://deb.debian.org/debian buster/main amd64 libmaven-parent-java all 31-2 [5100 B] Get:474 http://deb.debian.org/debian buster/main amd64 libplexus-utils2-java all 3.1.1-1 [249 kB] Get:475 http://deb.debian.org/debian buster/main amd64 libwagon-provider-api-java all 3.3.1-2 [50.1 kB] Get:476 http://deb.debian.org/debian buster/main amd64 libmaven-resolver-java all 1.3.1-1 [549 kB] Get:477 http://deb.debian.org/debian buster/main amd64 libplexus-cipher-java all 1.7-3 [15.0 kB] Get:478 http://deb.debian.org/debian buster/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:479 http://deb.debian.org/debian buster/main amd64 libplexus-component-annotations-java all 1.7.1-7 [7536 B] Get:480 http://deb.debian.org/debian buster/main amd64 libplexus-interpolation-java all 1.25-1 [76.8 kB] Get:481 http://deb.debian.org/debian buster/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:482 http://deb.debian.org/debian buster/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:483 http://deb.debian.org/debian buster/main amd64 libcdi-api-java all 1.2-2 [54.5 kB] Get:484 http://deb.debian.org/debian buster/main amd64 libsisu-inject-java all 0.3.3-1 [347 kB] Get:485 http://deb.debian.org/debian buster/main amd64 libsisu-plexus-java all 0.3.3-3 [182 kB] Get:486 http://deb.debian.org/debian buster/main amd64 libmaven3-core-java all 3.6.0-1 [1465 kB] Get:487 http://deb.debian.org/debian buster/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:488 http://deb.debian.org/debian buster/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:489 http://deb.debian.org/debian buster/main amd64 libplexus-io-java all 3.1.1-1 [64.6 kB] Get:490 http://deb.debian.org/debian buster/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:491 http://deb.debian.org/debian buster/main amd64 libsisu-guice-java all 4.2.0-1 [785 kB] Get:492 http://deb.debian.org/debian buster/main amd64 libsisu-ioc-java all 2.3.0-11 [492 kB] Get:493 http://deb.debian.org/debian buster/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get:494 http://deb.debian.org/debian buster/main amd64 libwagon-http-java all 3.3.1-2 [50.5 kB] Get:495 http://deb.debian.org/debian buster/main amd64 libistack-commons-java all 3.0.6-3 [144 kB] Get:496 http://deb.debian.org/debian buster/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-8 [163 kB] Get:497 http://deb.debian.org/debian buster/main amd64 librngom-java all 2.3.0.1-8 [288 kB] Get:498 http://deb.debian.org/debian buster/main amd64 libxsom-java all 2.3.0.1-8 [396 kB] Get:499 http://deb.debian.org/debian buster/main amd64 libtxw2-java all 2.3.0.1-8 [134 kB] Get:500 http://deb.debian.org/debian buster/main amd64 libdtd-parser-java all 1.2~svn20110404-1 [62.5 kB] Get:501 http://deb.debian.org/debian buster/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:502 http://deb.debian.org/debian buster/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:503 http://deb.debian.org/debian buster/main amd64 libstreambuffer-java all 1.5.4-1 [71.8 kB] Get:504 http://deb.debian.org/debian buster/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:505 http://deb.debian.org/debian buster/main amd64 libjaxb-java all 2.3.0.1-8 [1966 kB] Get:506 http://deb.debian.org/debian buster/main amd64 libngs-sdk2 amd64 2.9.3-1 [62.7 kB] Get:507 http://deb.debian.org/debian buster/main amd64 libngs-java amd64 2.9.3-1 [79.9 kB] Get:508 http://deb.debian.org/debian buster/main amd64 libngs-sdk-dev amd64 2.9.3-1 [111 kB] Get:509 http://deb.debian.org/debian buster/main amd64 libhtsjdk-java all 2.18.2+dfsg-2 [1499 kB] Get:510 http://deb.debian.org/debian buster/main amd64 libfindbin-libs-perl all 2.190.02-1 [30.3 kB] Get:511 http://deb.debian.org/debian buster/main amd64 fastqc all 0.11.8+dfsg-2 [386 kB] Get:512 http://deb.debian.org/debian buster/main amd64 ffindex amd64 0.9.9.9-2 [33.2 kB] Get:513 http://deb.debian.org/debian buster/main amd64 libffindex0 amd64 0.9.9.9-2 [18.0 kB] Get:514 http://deb.debian.org/debian buster/main amd64 flexbar amd64 1:3.4.0-2 [324 kB] Get:515 http://deb.debian.org/debian buster/main amd64 ttf-adf-accanthis all 0.20110505-3 [2672 B] Get:516 http://deb.debian.org/debian buster/main amd64 fonts-adf-accanthis all 0.20110505-3 [203 kB] Get:517 http://deb.debian.org/debian buster/main amd64 fonts-adf-berenis all 0.20110505-3 [281 kB] Get:518 http://deb.debian.org/debian buster/main amd64 ttf-adf-gillius all 0.20110505-3 [2668 B] Get:519 http://deb.debian.org/debian buster/main amd64 fonts-adf-gillius all 0.20110505-3 [190 kB] Get:520 http://deb.debian.org/debian buster/main amd64 ttf-adf-universalis all 0.20110505-3 [2676 B] Get:521 http://deb.debian.org/debian buster/main amd64 fonts-adf-universalis all 0.20110505-3 [111 kB] Get:522 http://deb.debian.org/debian buster/main amd64 fonts-go all 0~20170330-1 [369 kB] Get:523 http://deb.debian.org/debian buster/main amd64 xfonts-encodings all 1:1.0.4-2 [574 kB] Get:524 http://deb.debian.org/debian buster/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:525 http://deb.debian.org/debian buster/main amd64 fonts-lmodern all 2.004.5-6 [4539 kB] Get:526 http://deb.debian.org/debian buster/main amd64 lmodern all 2.004.5-6 [9488 kB] Get:527 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:528 http://deb.debian.org/debian buster/main amd64 fonts-noto-hinted all 20181227-1 [19.9 kB] Get:529 http://deb.debian.org/debian buster/main amd64 fonts-noto-ui-core all 20181227-1 [1510 kB] Get:530 http://deb.debian.org/debian buster/main amd64 fonts-noto-core all 20181227-1 [9171 kB] Get:531 http://deb.debian.org/debian buster/main amd64 fonts-open-sans all 1.11-1 [573 kB] Get:532 http://deb.debian.org/debian buster/main amd64 fonts-roboto-unhinted all 2:0~20170802-3 [2380 kB] Get:533 http://deb.debian.org/debian buster/main amd64 fonts-roboto-hinted all 2:0~20170802-3 [6300 B] Get:534 http://deb.debian.org/debian buster/main amd64 libfreecontact0v5 amd64 1.0.21-7+b1 [74.9 kB] Get:535 http://deb.debian.org/debian buster/main amd64 libxerces-c3.2 amd64 3.2.2+debian-1+deb10u1 [886 kB] Get:536 http://deb.debian.org/debian buster/main amd64 freecontact amd64 1.0.21-7+b1 [345 kB] Get:537 http://deb.debian.org/debian buster/main amd64 gcc-7-base amd64 7.4.0-6 [190 kB] Get:538 http://deb.debian.org/debian buster/main amd64 gdal-data all 2.4.0+dfsg-1 [744 kB] Get:539 http://deb.debian.org/debian buster/main amd64 genometools amd64 1.5.10+ds-3 [1953 kB] Get:540 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get:541 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get:542 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get:543 http://deb.debian.org/debian buster/main amd64 ghostscript amd64 9.27~dfsg-2+deb10u5 [95.0 kB] Get:544 http://deb.debian.org/debian buster/main amd64 libgs9 amd64 9.27~dfsg-2+deb10u5 [2198 kB] Get:545 http://deb.debian.org/debian buster/main amd64 libgs9-common all 9.27~dfsg-2+deb10u5 [5136 kB] Get:546 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get:547 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get:548 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get:549 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:550 http://deb.debian.org/debian buster/main amd64 gromacs amd64 2019.1-1 [127 kB] Get:551 http://deb.debian.org/debian buster/main amd64 gromacs-data all 2019.1-1 [32.7 MB] Get:552 http://deb.debian.org/debian buster/main amd64 libgromacs4 amd64 2019.1-1 [12.3 MB] Get:553 http://deb.debian.org/debian buster/main amd64 guile-2.0-libs amd64 2.0.13+1-5.1 [2232 kB] Get:554 http://deb.debian.org/debian buster/main amd64 hhsuite amd64 3.0~beta3+dfsg-3 [1032 kB] Get:555 http://deb.debian.org/debian buster/main amd64 hhsuite-data all 3.0~beta3+dfsg-3 [4405 kB] Get:556 http://deb.debian.org/debian buster/main amd64 hmmer amd64 3.2.1+dfsg-1 [1169 kB] Get:557 http://deb.debian.org/debian buster/main amd64 hyphy-mpi amd64 2.3.14+dfsg-1 [919 kB] Get:558 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get:559 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u3 [9183 kB] Get:560 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u3 [189 kB] Get:561 http://deb.debian.org/debian buster/main amd64 imagemagick-6.q16 amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [580 kB] Get:562 http://deb.debian.org/debian buster/main amd64 infernal amd64 1.1.2-2 [22.1 MB] Get:563 http://deb.debian.org/debian buster/main amd64 kissplice amd64 2.4.0-p1-4 [788 kB] Get:564 http://deb.debian.org/debian buster/main amd64 libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:565 http://deb.debian.org/debian buster/main amd64 libsuitesparseconfig5 amd64 1:5.4.0+dfsg-1 [20.9 kB] Get:566 http://deb.debian.org/debian buster/main amd64 libamd2 amd64 1:5.4.0+dfsg-1 [33.4 kB] Get:567 http://deb.debian.org/debian buster/main amd64 libarpack2 amd64 3.7.0-2 [102 kB] Get:568 http://deb.debian.org/debian buster/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [161 kB] Get:569 http://deb.debian.org/debian buster/main amd64 libarmadillo9 amd64 1:9.200.7+dfsg-1 [88.6 kB] Get:570 http://deb.debian.org/debian buster/main amd64 libasm-java all 7.0-1 [362 kB] Get:571 http://deb.debian.org/debian buster/main amd64 libvariable-magic-perl amd64 0.62-1+b1 [45.9 kB] Get:572 http://deb.debian.org/debian buster/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:573 http://deb.debian.org/debian buster/main amd64 libboost-mpi1.67.0 amd64 1.67.0-13+deb10u1 [272 kB] Get:574 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get:575 http://deb.debian.org/debian buster/main amd64 libcaf-openmpi-3 amd64 2.4.0-2 [35.6 kB] Get:576 http://deb.debian.org/debian buster/main amd64 libcglib-java all 3.2.10-1 [288 kB] Get:577 http://deb.debian.org/debian buster/main amd64 libcharls2 amd64 2.0.0+dfsg-1 [64.3 kB] Get:578 http://deb.debian.org/debian buster/main amd64 libcilkrts5 amd64 7.4.0-6 [42.2 kB] Get:579 http://deb.debian.org/debian buster/main amd64 libclass-c3-perl all 0.34-1 [22.4 kB] Get:580 http://deb.debian.org/debian buster/main amd64 libclass-c3-xs-perl amd64 0.14-1+b3 [16.9 kB] Get:581 http://deb.debian.org/debian buster/main amd64 libcoarrays-dev amd64 2.4.0-2 [29.1 kB] Get:582 http://deb.debian.org/debian buster/main amd64 libcoarrays-openmpi-dev amd64 2.4.0-2 [35.2 kB] Get:583 http://deb.debian.org/debian buster/main amd64 libcolamd2 amd64 1:5.4.0+dfsg-1 [30.3 kB] Get:584 http://deb.debian.org/debian buster/main amd64 libdap25 amd64 3.20.3-1 [557 kB] Get:585 http://deb.debian.org/debian buster/main amd64 libdapclient6v5 amd64 3.20.3-1 [202 kB] Get:586 http://deb.debian.org/debian buster/main amd64 libdapserver7v5 amd64 3.20.3-1 [131 kB] Get:587 http://deb.debian.org/debian buster/main amd64 libdata-dump-perl all 1.23-1 [29.5 kB] Get:588 http://deb.debian.org/debian buster/main amd64 libparams-util-perl amd64 1.07-3+b4 [23.0 kB] Get:589 http://deb.debian.org/debian buster/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:590 http://deb.debian.org/debian buster/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:591 http://deb.debian.org/debian buster/main amd64 libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:592 http://deb.debian.org/debian buster/main amd64 libdjvulibre21 amd64 3.5.27.1-10+deb10u1 [592 kB] Get:593 http://deb.debian.org/debian buster/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get:594 http://deb.debian.org/debian buster/main amd64 libservlet3.1-java all 1:4.0.1-2 [9516 B] Get:595 http://deb.debian.org/debian buster/main amd64 libjsp-api-java all 2.3.4-2+deb10u1 [53.7 kB] Get:596 http://deb.debian.org/debian buster/main amd64 libwebsocket-api-java all 1.1-1+deb10u1 [40.0 kB] Get:597 http://deb.debian.org/debian buster/main amd64 libel-api-java all 3.0.0-2+deb10u1 [64.9 kB] Get:598 http://deb.debian.org/debian buster/main amd64 libemail-date-format-perl all 1.005-1 [7050 B] Get:599 http://deb.debian.org/debian buster/main amd64 libepsilon1 amd64 0.9.2+dfsg-4 [42.0 kB] Get:600 http://deb.debian.org/debian buster/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:601 http://deb.debian.org/debian buster/main amd64 libeval-closure-perl all 0.14-1 [11.5 kB] Get:602 http://deb.debian.org/debian buster/main amd64 libfreexl1 amd64 1.0.5-3 [34.1 kB] Get:603 http://deb.debian.org/debian buster/main amd64 libfyba0 amd64 4.1.1-6 [114 kB] Get:604 http://deb.debian.org/debian buster/main amd64 libgeos-3.7.1 amd64 3.7.1-1 [735 kB] Get:605 http://deb.debian.org/debian buster/main amd64 libgeos-c1v5 amd64 3.7.1-1 [299 kB] Get:606 http://deb.debian.org/debian buster/main amd64 proj-data all 5.2.0-1 [6986 kB] Get:607 http://deb.debian.org/debian buster/main amd64 libproj13 amd64 5.2.0-1 [225 kB] Get:608 http://deb.debian.org/debian buster/main amd64 libgeotiff2 amd64 1.4.3-1 [72.0 kB] Get:609 http://deb.debian.org/debian buster/main amd64 libhdf4-0-alt amd64 4.2.13-4 [277 kB] Get:610 http://deb.debian.org/debian buster/main amd64 libminizip1 amd64 1.1-8+b1 [20.4 kB] Get:611 http://deb.debian.org/debian buster/main amd64 liburiparser1 amd64 0.9.1-1+deb10u1 [48.1 kB] Get:612 http://deb.debian.org/debian buster/main amd64 libkmlbase1 amd64 1.3.0-7 [48.9 kB] Get:613 http://deb.debian.org/debian buster/main amd64 libkmldom1 amd64 1.3.0-7 [172 kB] Get:614 http://deb.debian.org/debian buster/main amd64 libkmlengine1 amd64 1.3.0-7 [78.4 kB] Get:615 http://deb.debian.org/debian buster/main amd64 libkmlconvenience1 amd64 1.3.0-7 [50.1 kB] Get:616 http://deb.debian.org/debian buster/main amd64 libkmlregionator1 amd64 1.3.0-7 [25.1 kB] Get:617 http://deb.debian.org/debian buster/main amd64 libkmlxsd1 amd64 1.3.0-7 [34.6 kB] Get:618 http://deb.debian.org/debian buster/main amd64 libnetcdf13 amd64 1:4.6.2-1 [403 kB] Get:619 http://deb.debian.org/debian buster/main amd64 libodbc1 amd64 2.3.6-0.1 [223 kB] Get:620 http://deb.debian.org/debian buster/main amd64 libogdi3.2 amd64 3.2.1+ds-4 [241 kB] Get:621 http://deb.debian.org/debian buster/main amd64 libpoppler82 amd64 0.71.0-5 [1507 kB] Get:622 http://deb.debian.org/debian buster/main amd64 libqhull7 amd64 2015.2-4 [196 kB] Get:623 http://deb.debian.org/debian buster/main amd64 libspatialite7 amd64 4.3.0a-5+b2 [1256 kB] Get:624 http://deb.debian.org/debian buster/main amd64 odbcinst amd64 2.3.6-0.1 [48.4 kB] Get:625 http://deb.debian.org/debian buster/main amd64 odbcinst1debian2 amd64 2.3.6-0.1 [78.1 kB] Get:626 http://deb.debian.org/debian buster/main amd64 libgdal20 amd64 2.4.0+dfsg-1+b1 [6171 kB] Get:627 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-bin amd64 2.38.1+dfsg-1 [24.1 kB] Get:628 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:629 http://deb.debian.org/debian buster/main amd64 libharfbuzz-icu0 amd64 2.3.1-1 [834 kB] Get:630 http://deb.debian.org/debian buster/main amd64 libhawtjni-runtime-java all 1.16-1 [29.9 kB] Get:631 http://deb.debian.org/debian buster/main amd64 libhmsbeagle1v5 amd64 3.1.2+dfsg-6 [195 kB] Get:632 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get:633 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get:634 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get:635 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get:636 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get:637 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get:638 http://deb.debian.org/debian buster/main amd64 libicu4j-java all 62.1-2 [14.3 MB] Get:639 http://deb.debian.org/debian buster/main amd64 libilmbase23 amd64 2.2.1-2 [85.6 kB] Get:640 http://deb.debian.org/debian buster/main amd64 libjetbrains-annotations-java all 17.0.0-1 [16.0 kB] Get:641 http://deb.debian.org/debian buster/main amd64 libintellij-annotations-java all 17.0.0-1 [3336 B] Get:642 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:643 http://deb.debian.org/debian buster/main amd64 libipc-shareable-perl all 0.61-2 [32.0 kB] Get:644 http://deb.debian.org/debian buster/main amd64 libjansi-native-java all 1.8-1 [26.0 kB] Get:645 http://deb.debian.org/debian buster/main amd64 libjansi-java all 1.17.1-1 [63.8 kB] Get:646 http://deb.debian.org/debian buster/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:647 http://deb.debian.org/debian buster/main amd64 libjs-es5-shim all 4.5.12-1 [42.6 kB] Get:648 http://deb.debian.org/debian buster/main amd64 libjs-highlight.js all 9.12.0+dfsg1-4+deb10u1 [300 kB] Get:649 http://deb.debian.org/debian buster/main amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB] Get:650 http://deb.debian.org/debian buster/main amd64 libjs-sifter.js all 0.5.3+dfsg-1 [11.9 kB] Get:651 http://deb.debian.org/debian buster/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1 [3430 B] Get:652 http://deb.debian.org/debian buster/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1 [51.9 kB] Get:653 http://deb.debian.org/debian buster/main amd64 libjs-json all 0~20180723-2 [29.3 kB] Get:654 http://deb.debian.org/debian buster/main amd64 libjs-modernizr all 2.6.2+ds1-3 [46.7 kB] Get:655 http://deb.debian.org/debian buster/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:656 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get:657 http://deb.debian.org/debian buster/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [32.0 kB] Get:658 http://deb.debian.org/debian buster/main amd64 libkpathsea6 amd64 2018.20181218.49446-1 [167 kB] Get:659 http://deb.debian.org/debian buster/main amd64 texlive-binaries amd64 2018.20181218.49446-1 [11.3 MB] Get:660 http://deb.debian.org/debian buster/main amd64 libptexenc1 amd64 2018.20181218.49446-1 [61.0 kB] Get:661 http://deb.debian.org/debian buster/main amd64 libsynctex2 amd64 2018.20181218.49446-1 [80.5 kB] Get:662 http://deb.debian.org/debian buster/main amd64 libtexlua52 amd64 2018.20181218.49446-1 [112 kB] Get:663 http://deb.debian.org/debian buster/main amd64 libtexlua53 amd64 2018.20181218.49446-1 [126 kB] Get:664 http://deb.debian.org/debian buster/main amd64 libtexluajit2 amd64 2018.20181218.49446-1 [256 kB] Get:665 http://deb.debian.org/debian buster/main amd64 libteckit0 amd64 2.5.8+ds2-5 [318 kB] Get:666 http://deb.debian.org/debian buster/main amd64 libwoff1 amd64 1.0.2-1 [43.2 kB] Get:667 http://deb.debian.org/debian buster/main amd64 libxxhash0 amd64 0.6.5-2 [7156 B] Get:668 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:669 http://deb.debian.org/debian buster/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:670 http://deb.debian.org/debian buster/main amd64 libsub-identify-perl amd64 0.14-1+b1 [12.0 kB] Get:671 http://deb.debian.org/debian buster/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:672 http://deb.debian.org/debian buster/main amd64 libnamespace-autoclean-perl all 0.28-1 [14.7 kB] Get:673 http://deb.debian.org/debian buster/main amd64 libparams-validationcompiler-perl all 0.30-1 [31.6 kB] Get:674 http://deb.debian.org/debian buster/main amd64 libmro-compat-perl all 0.13-1 [12.2 kB] Get:675 http://deb.debian.org/debian buster/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:676 http://deb.debian.org/debian buster/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get:677 http://deb.debian.org/debian buster/main amd64 libspecio-perl all 0.43-1 [142 kB] Get:678 http://deb.debian.org/debian buster/main amd64 liblog-dispatch-perl all 2.68-1 [77.5 kB] Get:679 http://deb.debian.org/debian buster/main amd64 liblog-log4perl-perl all 1.49-1 [377 kB] Get:680 http://deb.debian.org/debian buster/main amd64 libopenexr23 amd64 2.2.1-4.1+deb10u1 [592 kB] Get:681 http://deb.debian.org/debian buster/main amd64 libmagickcore-6.q16-6-extra amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [206 kB] Get:682 http://deb.debian.org/debian buster/main amd64 libmail-java all 1.6.2-1 [696 kB] Get:683 http://deb.debian.org/debian buster/main amd64 libsys-hostname-long-perl all 1.5-1 [12.0 kB] Get:684 http://deb.debian.org/debian buster/main amd64 libmail-sendmail-perl all 0.80-1 [25.3 kB] Get:685 http://deb.debian.org/debian buster/main amd64 libmime-charset-perl all 1.012.2-1 [35.4 kB] Get:686 http://deb.debian.org/debian buster/main amd64 libmime-lite-perl all 3.030-2 [72.3 kB] Get:687 http://deb.debian.org/debian buster/main amd64 libmime-types-perl all 2.17-1 [66.9 kB] Get:688 http://deb.debian.org/debian buster/main amd64 libncbi6 amd64 6.1.20170106+dfsg1-0+deb10u2 [4053 kB] Get:689 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:690 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get:691 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get:692 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get:693 http://deb.debian.org/debian buster/main amd64 libpackage-stash-xs-perl amd64 0.29-1 [19.8 kB] Get:694 http://deb.debian.org/debian buster/main amd64 libpulse0 amd64 12.2-4+deb10u1 [281 kB] Get:695 http://deb.debian.org/debian buster/main amd64 libref-util-perl all 0.204-1 [17.1 kB] Get:696 http://deb.debian.org/debian buster/main amd64 libref-util-xs-perl amd64 0.117-1+b1 [14.0 kB] Get:697 http://deb.debian.org/debian buster/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:698 http://deb.debian.org/debian buster/main amd64 libruby2.5 amd64 2.5.5-3+deb10u4 [3442 kB] Get:699 http://deb.debian.org/debian buster/main amd64 libsaxonhe-java all 9.9.0.2+dfsg-1 [4292 kB] Get:700 http://deb.debian.org/debian buster/main amd64 libsombok3 amd64 2.4.0-2 [31.3 kB] Get:701 http://deb.debian.org/debian buster/main amd64 libstaden-read13 amd64 1.14.11-6 [280 kB] Get:702 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get:703 http://deb.debian.org/debian buster/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:704 http://deb.debian.org/debian buster/main amd64 libubsan0 amd64 7.4.0-6 [124 kB] Get:705 http://deb.debian.org/debian buster/main amd64 libunicode-linebreak-perl amd64 0.0.20190101-1 [103 kB] Get:706 http://deb.debian.org/debian buster/main amd64 libwxbase3.0-0v5 amd64 3.0.4+dfsg-8 [1057 kB] Get:707 http://deb.debian.org/debian buster/main amd64 libwxgtk3.0-gtk3-0v5 amd64 3.0.4+dfsg-8 [4350 kB] Get:708 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get:709 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get:710 http://deb.debian.org/debian buster/main amd64 loki amd64 2.4.7.4-8 [358 kB] Get:711 http://deb.debian.org/debian buster/main amd64 lynx amd64 2.8.9rel.1-3+deb10u1 [642 kB] Get:712 http://deb.debian.org/debian buster/main amd64 maq amd64 0.7.1-8 [313 kB] Get:713 http://deb.debian.org/debian buster/main amd64 med-cloud all 3.3 [17.0 kB] Get:714 http://deb.debian.org/debian buster/main amd64 med-config all 3.3 [18.7 kB] Get:715 http://deb.debian.org/debian buster/main amd64 med-tasks all 3.3 [15.9 kB] Get:716 http://deb.debian.org/debian buster/main amd64 mira-assembler amd64 4.9.6-4+b1 [2290 kB] Get:717 http://deb.debian.org/debian buster/main amd64 mothur amd64 1.41.21-1 [4659 kB] Get:718 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:719 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get:720 http://deb.debian.org/debian buster/main amd64 node-highlight.js all 9.12.0+dfsg1-4+deb10u1 [237 kB] Get:721 http://deb.debian.org/debian buster/main amd64 nodejs-doc all 10.24.0~dfsg-1~deb10u1 [974 kB] Get:722 http://deb.debian.org/debian buster/main amd64 pandoc-data all 2.2.1-3 [329 kB] Get:723 http://deb.debian.org/debian buster/main amd64 pandoc amd64 2.2.1-3+b2 [14.7 MB] Get:724 http://deb.debian.org/debian buster/main amd64 phyml amd64 3:3.3.20180621-2 [1653 kB] Get:725 http://deb.debian.org/debian buster/main amd64 prank amd64 0.0.170427+dfsg-2 [375 kB] Get:726 http://deb.debian.org/debian buster/main amd64 prime-phylo amd64 1.0.11-7+b1 [850 kB] Get:727 http://deb.debian.org/debian buster/main amd64 probalign amd64 1.4-8 [66.2 kB] Get:728 http://deb.debian.org/debian buster/main amd64 probcons amd64 1.12-12 [116 kB] Get:729 http://deb.debian.org/debian buster/main amd64 proda amd64 1.0-12 [63.7 kB] Get:730 http://deb.debian.org/debian buster/main amd64 proj-bin amd64 5.2.0-1 [105 kB] Get:731 http://deb.debian.org/debian buster/main amd64 prosper all 2018.20190227-2 [32.1 kB] Get:732 http://deb.debian.org/debian buster/main amd64 texlive-font-utils all 2018.20190227-2 [1746 kB] Get:733 http://deb.debian.org/debian buster/main amd64 texlive-fonts-extra all 2018.20190227-2 [412 MB] Get:734 http://deb.debian.org/debian buster/main amd64 texlive-fonts-extra-doc all 2018.20190227-2 [91.6 MB] Get:735 http://deb.debian.org/debian buster/main amd64 texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get:736 http://deb.debian.org/debian buster/main amd64 texlive-fonts-recommended-doc all 2018.20190227-2 [2661 kB] Get:737 http://deb.debian.org/debian buster/main amd64 texlive-generic-extra all 2018.20190227-2 [32.2 kB] Get:738 http://deb.debian.org/debian buster/main amd64 texlive-generic-recommended all 2018.20190227-2 [32.2 kB] Get:739 http://deb.debian.org/debian buster/main amd64 texlive-latex-base all 2018.20190227-2 [984 kB] Get:740 http://deb.debian.org/debian buster/main amd64 texlive-latex-base-doc all 2018.20190227-2 [47.2 MB] Get:741 http://deb.debian.org/debian buster/main amd64 texlive-latex-recommended-doc all 2018.20190227-2 [47.0 MB] Get:742 http://deb.debian.org/debian buster/main amd64 texlive-pstricks-doc all 2018.20190227-2 [253 MB] Get:743 http://deb.debian.org/debian buster/main amd64 texlive-latex-extra-doc all 2018.20190227-2 [420 MB] Get:744 http://deb.debian.org/debian buster/main amd64 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get:745 http://deb.debian.org/debian buster/main amd64 texlive-pstricks all 2018.20190227-2 [26.6 MB] Get:746 http://deb.debian.org/debian buster/main amd64 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Get:747 http://deb.debian.org/debian buster/main amd64 texlive-pictures all 2018.20190227-2 [8201 kB] Get:748 http://deb.debian.org/debian buster/main amd64 texlive-pictures-doc all 2018.20190227-2 [130 MB] Get:749 http://deb.debian.org/debian buster/main amd64 texlive-base all 2018.20190227-2 [19.7 MB] Get:750 http://deb.debian.org/debian buster/main amd64 texlive-extra-utils all 2018.20190227-2 [39.4 MB] Get:751 http://deb.debian.org/debian buster/main amd64 texlive-plain-generic all 2018.20190227-2 [24.3 MB] Get:752 http://deb.debian.org/debian buster/main amd64 psmisc amd64 23.2-1+deb10u1 [126 kB] Get:753 http://deb.debian.org/debian buster/main amd64 pvm amd64 3.4.6-2 [168 kB] Get:754 http://deb.debian.org/debian buster/main amd64 python-biopython amd64 1.73+dfsg-1 [1334 kB] Get:755 http://deb.debian.org/debian buster/main amd64 python-biopython-doc all 1.73+dfsg-1 [14.1 MB] Get:756 http://deb.debian.org/debian buster/main amd64 python-configparser all 3.5.0b2-1 [59.2 kB] Get:757 http://deb.debian.org/debian buster/main amd64 python-future all 0.16.0-1 [348 kB] Get:758 http://deb.debian.org/debian buster/main amd64 python-gdal amd64 2.4.0+dfsg-1+b1 [814 kB] Get:759 http://deb.debian.org/debian buster/main amd64 python-glade2 amd64 2.24.0-5.1+b1 [43.6 kB] Get:760 http://deb.debian.org/debian buster/main amd64 python-gtk2 amd64 2.24.0-5.1+b1 [633 kB] Get:761 http://deb.debian.org/debian buster/main amd64 python-mpi4py amd64 2.0.0-3+b3 [424 kB] Get:762 http://deb.debian.org/debian buster/main amd64 python-networkx all 2.2-1 [1020 kB] Get:763 http://deb.debian.org/debian buster/main amd64 python-olefile all 0.46-1 [35.9 kB] Get:764 http://deb.debian.org/debian buster/main amd64 python-scandir amd64 1.9.0-2 [18.3 kB] Get:765 http://deb.debian.org/debian buster/main amd64 python-pathlib2 all 2.3.3-1 [18.3 kB] Get:766 http://deb.debian.org/debian buster/main amd64 python-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:767 http://deb.debian.org/debian buster/main amd64 python-wxgtk3.0 amd64 3.0.2.0+dfsg-8 [5196 kB] Get:768 http://deb.debian.org/debian buster/main amd64 python3-elasticsearch all 5.4.0-1 [47.3 kB] Get:769 http://deb.debian.org/debian buster/main amd64 python3-future all 0.16.0-1 [346 kB] Get:770 http://deb.debian.org/debian buster/main amd64 python3-biomaj3-core all 3.0.15-1 [23.4 kB] Get:771 http://deb.debian.org/debian buster/main amd64 python3-biomaj3-cli all 3.1.10-1 [18.3 kB] Get:772 http://deb.debian.org/debian buster/main amd64 python3-soupsieve all 1.8+dfsg-1 [27.6 kB] Get:773 http://deb.debian.org/debian buster/main amd64 python3-bs4 all 4.7.1-1 [94.1 kB] Get:774 http://deb.debian.org/debian buster/main amd64 python3-gdal amd64 2.4.0+dfsg-1+b1 [601 kB] Get:775 http://deb.debian.org/debian buster/main amd64 python3-webencodings all 0.5.1-1 [10.9 kB] Get:776 http://deb.debian.org/debian buster/main amd64 python3-html5lib all 1.0.1-1 [89.5 kB] Get:777 http://deb.debian.org/debian buster/main amd64 python3-olefile all 0.46-1 [35.9 kB] Get:778 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:779 http://deb.debian.org/debian buster/main amd64 python3-sparqlwrapper all 1.8.2-0.1 [28.4 kB] Get:780 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get:781 http://deb.debian.org/debian buster/main amd64 r-base-dev all 3.5.2-1 [4480 B] Get:782 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:783 http://deb.debian.org/debian buster/main amd64 r-cran-backports amd64 1.1.3-1 [55.6 kB] Get:784 http://deb.debian.org/debian buster/main amd64 r-cran-base64enc amd64 0.1-3-2 [27.7 kB] Get:785 http://deb.debian.org/debian buster/main amd64 r-cran-bindr all 0.1.1-2 [18.1 kB] Get:786 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:787 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get:788 http://deb.debian.org/debian buster/main amd64 r-cran-bindrcpp amd64 0.2.2-2 [71.4 kB] Get:789 http://deb.debian.org/debian buster/main amd64 r-cran-bit amd64 1.1-14-1+b1 [221 kB] Get:790 http://deb.debian.org/debian buster/main amd64 r-cran-bit64 amd64 0.9-7-3 [438 kB] Get:791 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:792 http://deb.debian.org/debian buster/main amd64 r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get:793 http://deb.debian.org/debian buster/main amd64 r-cran-blob all 1.1.1-2 [25.0 kB] Get:794 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get:795 http://deb.debian.org/debian buster/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get:796 http://deb.debian.org/debian buster/main amd64 r-cran-data.table amd64 1.12.0+dfsg-1 [1359 kB] Get:797 http://deb.debian.org/debian buster/main amd64 r-cran-dbi all 1.0.0-2 [789 kB] Get:798 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get:799 http://deb.debian.org/debian buster/main amd64 r-cran-rprojroot all 1.3-2-2 [96.9 kB] Get:800 http://deb.debian.org/debian buster/main amd64 r-cran-desc all 1.2.0-2 [290 kB] Get:801 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get:802 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get:803 http://deb.debian.org/debian buster/main amd64 r-cran-hms all 0.4.2-2 [59.1 kB] Get:804 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get:805 http://deb.debian.org/debian buster/main amd64 r-cran-praise all 1.0.0-3 [19.7 kB] Get:806 http://deb.debian.org/debian buster/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get:807 http://deb.debian.org/debian buster/main amd64 r-cran-testthat amd64 2.0.1-1 [954 kB] Get:808 http://deb.debian.org/debian buster/main amd64 r-cran-dbitest all 1.5-2-2 [432 kB] Get:809 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get:810 http://deb.debian.org/debian buster/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get:811 http://deb.debian.org/debian buster/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get:812 http://deb.debian.org/debian buster/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get:813 http://deb.debian.org/debian buster/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get:814 http://deb.debian.org/debian buster/main amd64 r-cran-purrr amd64 0.3.0-1 [384 kB] Get:815 http://deb.debian.org/debian buster/main amd64 r-cran-tidyselect amd64 0.2.5-1 [117 kB] Get:816 http://deb.debian.org/debian buster/main amd64 r-cran-dplyr amd64 0.7.8-1 [1693 kB] Get:817 http://deb.debian.org/debian buster/main amd64 r-cran-evaluate all 0.13-1 [78.5 kB] Get:818 http://deb.debian.org/debian buster/main amd64 r-cran-filehash amd64 2.4-1-3 [305 kB] Get:819 http://deb.debian.org/debian buster/main amd64 r-cran-g.data all 2.4-3 [88.9 kB] Get:820 http://deb.debian.org/debian buster/main amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB] Get:821 http://deb.debian.org/debian buster/main amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB] Get:822 http://deb.debian.org/debian buster/main amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get:823 http://deb.debian.org/debian buster/main amd64 r-cran-yaml amd64 2.2.0-1 [101 kB] Get:824 http://deb.debian.org/debian buster/main amd64 r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB] Get:825 http://deb.debian.org/debian buster/main amd64 r-cran-later amd64 0.7.5+dfsg-2 [71.1 kB] Get:826 http://deb.debian.org/debian buster/main amd64 r-cran-promises amd64 1.0.1-2 [161 kB] Get:827 http://deb.debian.org/debian buster/main amd64 r-cran-httpuv amd64 1.4.5.1+dfsg-1 [292 kB] Get:828 http://deb.debian.org/debian buster/main amd64 r-cran-mime amd64 0.6-1 [35.1 kB] Get:829 http://deb.debian.org/debian buster/main amd64 r-cran-markdown amd64 0.9+dfsg-1 [126 kB] Get:830 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get:831 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get:832 http://deb.debian.org/debian buster/main amd64 r-cran-xfun all 0.4-1 [145 kB] Get:833 http://deb.debian.org/debian buster/main amd64 r-cran-knitr all 1.21+dfsg-2 [855 kB] Get:834 http://deb.debian.org/debian buster/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get:835 http://deb.debian.org/debian buster/main amd64 r-cran-lubridate amd64 1.7.4-2 [1028 kB] Get:836 http://deb.debian.org/debian buster/main amd64 r-cran-memoise all 1.1.0-2 [38.6 kB] Get:837 http://deb.debian.org/debian buster/main amd64 r-cran-mockery all 0.4.1.1+dfsg-1 [39.1 kB] Get:838 http://deb.debian.org/debian buster/main amd64 r-cran-mockr all 0.1-2 [23.7 kB] Get:839 http://deb.debian.org/debian buster/main amd64 r-cran-multicore amd64 0.2-1+b2 [22.5 kB] Get:840 http://deb.debian.org/debian buster/main amd64 r-cran-png amd64 0.1-7-3 [40.4 kB] Get:841 http://deb.debian.org/debian buster/main amd64 r-cran-tinytex all 0.10-1 [89.6 kB] Get:842 http://deb.debian.org/debian buster/main amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get:843 http://deb.debian.org/debian buster/main amd64 r-cran-sourcetools amd64 0.1.7-2 [45.2 kB] Get:844 http://deb.debian.org/debian buster/main amd64 r-cran-shiny all 1.2.0+dfsg-1 [3013 kB] Get:845 http://deb.debian.org/debian buster/main amd64 r-cran-rmarkdown all 1.11+dfsg-1 [2271 kB] Get:846 http://deb.debian.org/debian buster/main amd64 r-cran-rsqlite amd64 2.1.1-2+b1 [858 kB] Get:847 http://deb.debian.org/debian buster/main amd64 r-cran-runit all 0.4.32-2 [293 kB] Get:848 http://deb.debian.org/debian buster/main amd64 r-cran-sp amd64 1:1.3-1-1 [1822 kB] Get:849 http://deb.debian.org/debian buster/main amd64 r-cran-testit all 0.9-1 [32.2 kB] Get:850 http://deb.debian.org/debian buster/main amd64 r-cran-tikzdevice amd64 0.12-1 [1074 kB] Get:851 http://deb.debian.org/debian buster/main amd64 r-cran-xml2 amd64 1.2.0-3 [338 kB] Get:852 http://deb.debian.org/debian buster/main amd64 r-other-mott-happy.hbrem amd64 2.4-3 [215 kB] Get:853 http://deb.debian.org/debian buster/main amd64 r-recommended all 3.5.2-1 [2772 B] Get:854 http://deb.debian.org/debian buster/main amd64 raster3d amd64 3.0-3-5 [168 kB] Get:855 http://deb.debian.org/debian buster/main amd64 rename all 1.10-1 [17.2 kB] Get:856 http://deb.debian.org/debian buster/main amd64 ruby2.5 amd64 2.5.5-3+deb10u4 [400 kB] Get:857 http://deb.debian.org/debian buster/main amd64 ruby amd64 1:2.5.1 [11.3 kB] Get:858 http://deb.debian.org/debian buster/main amd64 samtools amd64 1.9-4 [443 kB] Get:859 http://deb.debian.org/debian buster/main amd64 seqan-apps amd64 2.4.0+dfsg-11 [11.4 MB] Get:860 http://deb.debian.org/debian buster/main amd64 staden-io-lib-utils amd64 1.14.11-6 [166 kB] Get:861 http://deb.debian.org/debian buster/main amd64 t-coffee amd64 12.00.7fb08c2-4 [1520 kB] Get:862 http://deb.debian.org/debian buster/main amd64 tabix amd64 1.9-12~deb10u1 [292 kB] Get:863 http://deb.debian.org/debian buster/main amd64 tex-gyre all 20180621-3 [6210 kB] Get:864 http://deb.debian.org/debian buster/main amd64 texlive-fonts-extra-links all 2018.20190227-2 [31.7 kB] Get:865 http://deb.debian.org/debian buster/main amd64 tigr-glimmer amd64 3.02b-2 [282 kB] Get:866 http://deb.debian.org/debian buster/main amd64 tm-align amd64 20170708+dfsg-2 [871 kB] Get:867 http://deb.debian.org/debian buster/main amd64 tophat amd64 2.1.1+dfsg1-2+b1 [670 kB] Get:868 http://deb.debian.org/debian buster/main amd64 x11-xserver-utils amd64 7.7+8 [168 kB] Get:869 http://deb.debian.org/debian buster/main amd64 xterm amd64 344-1+deb10u2 [771 kB] Get:870 http://deb.debian.org/debian buster/main amd64 zalign amd64 0.9.1-4 [48.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2421 MB in 2min 55s (13.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182235 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.28-10+deb10u1_amd64.deb ... Unpacking libc6-dev:amd64 (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../libc-dev-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-dev-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../libc6_2.28-10+deb10u1_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc6:amd64 (2.28-10+deb10u1) ... Installing new version of config file /etc/ld.so.conf.d/x86_64-linux-gnu.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182284 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc-bin (2.28-10+deb10u1) ... Updating /etc/nsswitch.conf to current default. Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182284 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.3.0-6_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-6) ... Setting up gcc-8-base:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182290 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.3.0-6_amd64.deb ... Unpacking libgcc1:amd64 (1:8.3.0-6) over (1:6.3.0-18+deb9u1) ... Setting up libgcc1:amd64 (1:8.3.0-6) ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182290 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182300 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-4_amd64.deb ... Unpacking bash (5.0-4) over (4.4-5) ... Setting up bash (5.0-4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182301 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3_amd64.deb ... Unpacking coreutils (8.30-3) over (8.26-3) ... Setting up coreutils (8.30-3) ... Selecting previously unselected package libzstd1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182301 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3+deb10u2_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182307 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182313 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) over (0.16-1+deb9u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182336 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.15-2+deb10u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.15-2+deb10u1) over (0.23.3-2) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182336 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u8_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u8) over (3.5.8-5+deb9u5) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u8) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182337 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-4_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.3-4) ... Setting up libseccomp2:amd64 (2.3.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182343 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.35-1_amd64.deb ... Unpacking libgpg-error0:amd64 (1.35-1) over (1.26-2) ... Setting up libgpg-error0:amd64 (1.35-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182324 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1+deb10u2_amd64.deb ... Unpacking gpgv (2.2.12-1+deb10u2) over (2.1.18-8~deb9u4) ... Setting up gpgv (2.2.12-1+deb10u2) ... Selecting previously unselected package libdrm-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182324 files and directories currently installed.) Preparing to unpack .../0-libdrm-common_2.4.97-1_all.deb ... Unpacking libdrm-common (2.4.97-1) ... Preparing to unpack .../1-libdrm2_2.4.97-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.97-1) over (2.4.74-1) ... Preparing to unpack .../2-libdrm-amdgpu1_2.4.97-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.97-1) over (2.4.74-1) ... Preparing to unpack .../3-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) over (0.8.3-1) ... Preparing to unpack .../4-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) over (3.1-20160903-3) ... Selecting previously unselected package libllvm7:amd64. Preparing to unpack .../5-libllvm7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Preparing to unpack .../6-sysstat_12.0.3-2_amd64.deb ... Unpacking sysstat (12.0.3-2) over (11.4.3-2) ... Preparing to unpack .../7-libgl1-mesa-dri_18.3.6-2+deb10u1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) over (13.0.6-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182347 files and directories currently installed.) Removing libsensors4:amd64 (1:3.4.0-4) ... Selecting previously unselected package libsensors-config. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182338 files and directories currently installed.) Preparing to unpack .../00-libsensors-config_1%3a3.5.0-3_all.deb ... Unpacking libsensors-config (1:3.5.0-3) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../01-libsensors5_1%3a3.5.0-3_amd64.deb ... Unpacking libsensors5:amd64 (1:3.5.0-3) ... Preparing to unpack .../02-libexpat1-dev_2.2.6-2+deb10u4_amd64.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182836 files and directories currently installed.) Preparing to unpack .../mount_2.33.1-0.1_amd64.deb ... Unpacking mount (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Preparing to unpack .../util-linux_2.33.1-0.1_amd64.deb ... Unpacking util-linux (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Replacing files in old package login (1:4.4-4.1) ... Selecting previously unselected package fdisk. Preparing to unpack .../fdisk_2.33.1-0.1_amd64.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182841 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 182843 files and directories currently installed.) Preparing to unpack .../00-perl-doc_5.28.1-6+deb10u1_all.deb ... Leaving 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.28.1-6+deb10u1) over (5.24.1-3+deb9u7) ... Preparing to unpack .../01-libclass-xsaccessor-perl_1.19-3+b2_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b2) over (1.19-2+b7) ... 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Preparing to unpack .../20-ampliconnoise_1.29-8_amd64.deb ... Unpacking ampliconnoise (1.29-8) over (1.29-6) ... Preparing to unpack .../21-libtamuanova-0.2_0.2-4+b1_amd64.deb ... Unpacking libtamuanova-0.2 (0.2-4+b1) over (0.2-4) ... Preparing to unpack .../22-theseus_3.3.0-8_amd64.deb ... Unpacking theseus (3.3.0-8) over (3.3.0-5+b1) ... Preparing to unpack .../23-clonalframe_1.2-9_amd64.deb ... Unpacking clonalframe (1.2-9) over (1.2-5) ... dpkg: libgsl2:amd64: dependency problems, but removing anyway as you requested: altree depends on libgsl2. (Reading database ... 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Unpacking default-mysql-client (1.0.5) over (1.0.2) ... dpkg: mariadb-client-10.1: dependency problems, but removing anyway as you requested: biomaj depends on default-mysql-client | virtual-mysql-client; however: Package default-mysql-client is not configured yet. Package virtual-mysql-client is not installed. Package mariadb-client-10.1 which provides virtual-mysql-client is to be removed. (Reading database ... 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Removing texlive-latex-base (2016.20170123-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 159762 files and directories currently installed.) Preparing to unpack .../texlive-latex-base-doc_2018.20190227-2_all.deb ... Unpacking texlive-latex-base-doc (2018.20190227-2) over (2016.20170123-5) ... dpkg: texlive-latex-extra: dependency problems, but removing anyway as you requested: prosper depends on texlive-latex-extra (>= 2018.20190227). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 159574 files and directories currently installed.) Removing texlive-latex-extra (2016.20170123-5) ... dpkg: considering deconfiguration of texlive-latex-extra-doc, which would be broken by installation of texlive-pstricks-doc ... dpkg: yes, will deconfigure texlive-latex-extra-doc (broken by texlive-pstricks-doc) (Reading database ... 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Setting up libgeos-3.7.1:amd64 (3.7.1-1) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up gdal-data (2.4.0+dfsg-1) ... Setting up dnaclust (3-6+b1) ... Setting up libplexus-cipher-java (1.7-3) ... Setting up libjs-jquery-datatables (1.10.19+dfsg-1) ... Setting up libjansson4:amd64 (2.12-1) ... Setting up t-coffee (12.00.7fb08c2-4) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libjs-es5-shim (4.5.12-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libdconf1:amd64 (0.30.1-2) ... Setting up libgeronimo-annotation-1.3-spec-java (1.0-1) ... Setting up fonts-adf-accanthis (0.20110505-3) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libgkl-jni (0.8.5+dfsg-2) ... Setting up infernal (1.1.2-2) ... Setting up libasan5:amd64 (8.3.0-6) ... Setting up fonts-adf-universalis (0.20110505-3) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up gcc-7-base:amd64 (7.4.0-6) ... Setting up make (4.2.1-1.2) ... Setting up fonts-go (0~20170330-1) ... Setting up libgsl23:amd64 (2.5+dfsg-6) ... Setting up libteckit0:amd64 (2.5.8+ds2-5) ... Setting up proda (1.0-12) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up xfonts-encodings (1:1.0.4-2) ... Setting up libwebsocket-api-java (1.1-1+deb10u1) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up seqan-apps (2.4.0+dfsg-11) ... Setting up libplexus-interpolation-java (1.25-1) ... Setting up libjs-d3 (3.5.17-2) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-3) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (8.3.0-6) ... Setting up mailutils-common (1:3.5-4) ... Setting up icu-devtools (63.1-6+deb10u3) ... Setting up libgeos-c1v5:amd64 (3.7.1-1) ... Setting up libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Setting up libboost-iostreams1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libngs-sdk-dev (2.9.3-1) ... Setting up libodbc1:amd64 (2.3.6-0.1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up libactivation-java (1.2.0-2) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-1) ... Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up libjsp-api-java (2.3.4-2+deb10u1) ... Setting up libcommons-lang3-java (3.8-2) ... Setting up libkpathsea6:amd64 (2018.20181218.49446-1) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Setting up libmpx2:amd64 (8.3.0-6) ... Setting up libubsan1:amd64 (8.3.0-6) ... Setting up libatk1.0-data (2.30.0-2) ... Setting up libtamuanova-0.2 (0.2-4+b1) ... Setting up librngom-java (2.3.0.1-8) ... Setting up liburiparser1:amd64 (0.9.1-1+deb10u1) ... Setting up libisl19:amd64 (0.20-2) ... Setting up libsquid1 (1.9g+cvs20050121-11) ... Setting up loki (2.4.7.4-8) ... Setting up libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up python-matplotlib2-data (2.2.3-6) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up libfreexl1:amd64 (1.0.5-3) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up libfreemarker-java (2.3.23-9) ... Setting up exim4-config (4.92-8+deb10u6) ... Installing new version of config file /etc/exim4/conf.d/acl/30_exim4-config_check_rcpt ... Installing new version of config file /etc/exim4/conf.d/acl/40_exim4-config_check_data ... Installing new version of config file /etc/exim4/conf.d/main/01_exim4-config_listmacrosdefs ... Installing new version of config file /etc/exim4/conf.d/main/02_exim4-config_options ... Installing new version of config file /etc/exim4/conf.d/router/200_exim4-config_primary ... Installing new version of config file /etc/exim4/conf.d/transport/30_exim4-config_remote_smtp ... Installing new version of config file /etc/exim4/conf.d/transport/30_exim4-config_remote_smtp_smarthost ... Installing new version of config file /etc/exim4/exim4.conf.template ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libgatbcore2 (1.4.1+git20181225.44d5a44+dfsg-3) ... Setting up libjsoup-java (1.10.2-2) ... Setting up libsisu-guice-java (4.2.0-1) ... Setting up mariadb-client-core-10.3 (1:10.3.34-0+deb10u1) ... Setting up libmail-java (1.6.2-1) ... Setting up libcilkrts5:amd64 (7.4.0-6) ... Setting up python-biopython-doc (1.73+dfsg-1) ... Setting up bamtools (2.5.1+dfsg-3) ... Setting up libfyba0:amd64 (4.1.1-6) ... Setting up libxxhash0:amd64 (0.6.5-2) ... Setting up libubsan0:amd64 (7.4.0-6) ... Setting up procps (2:3.3.15-2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up libkmlbase1:amd64 (1.3.0-7) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up gpgconf (2.2.12-1+deb10u2) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libpam-systemd:amd64 (241-7~deb10u8) ... Setting up hmmer (3.2.1+dfsg-1) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up libplexus-sec-dispatcher-java (1.4-4) ... Setting up libboost-atomic1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libwxbase3.0-0v5:amd64 (3.0.4+dfsg-8) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libmaven-shared-utils-java (3.3.0-1) ... Setting up libatk1.0-0:amd64 (2.30.0-2) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libprotobuf17:amd64 (3.6.1.3-2) ... Setting up libwayland-egl1:amd64 (1.16.0-1) ... Setting up xterm (344-1+deb10u2) ... Installing new version of config file /etc/X11/app-defaults/XTerm ... Setting up libhttpcore-java (4.4.11-1) ... Setting up pandoc-data (2.2.1-3) ... Setting up libjoptsimple-java (5.0.4-3) ... Setting up libxsom-java (2.3.0.1-8) ... Setting up libngs-java (2.9.3-1) ... Setting up libboost-system1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up glib-networking-common (2.58.0-2+deb10u2) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libbinutils:amd64 (2.31.1-16) ... Setting up cpp-8 (8.3.0-6) ... Setting up fonts-noto-ui-core (20181227-1) ... Setting up libde265-0:amd64 (1.0.3-1+b1) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up libboost-serialization1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up tigr-glimmer (3.02b-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libcdi-api-java (1.2-2) ... Setting up fonts-adf-gillius (0.20110505-3) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libhawtjni-runtime-java (1.16-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up sysstat (12.0.3-2) ... Installing new version of config file /etc/init.d/sysstat ... Installing new version of config file /etc/sysstat/sysstat ... Installing new version of config file /etc/sysstat/sysstat.ioconf ... Created symlink /etc/systemd/system/multi-user.target.wants/sysstat.service → /lib/systemd/system/sysstat.service. Setting up fonts-noto-core (20181227-1) ... Setting up bedtools (2.27.1+dfsg-4) ... Setting up fonts-roboto-hinted (2:0~20170802-3) ... Setting up libsuitesparseconfig5:amd64 (1:5.4.0+dfsg-1) ... Setting up libcc1-0:amd64 (8.3.0-6) ... Setting up libargs4j-java (2.33-1) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gpg (2.2.12-1+deb10u2) ... Setting up guile-2.2-libs:amd64 (2.2.4+1-2+deb10u1) ... Setting up liblsan0:amd64 (8.3.0-6) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libitm1:amd64 (8.3.0-6) ... Setting up libservlet3.1-java (1:4.0.1-2) ... Setting up libsynctex2:amd64 (2018.20181218.49446-1) ... Setting up ttf-adf-gillius (0.20110505-3) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up prank (0.0.170427+dfsg-2) ... Setting up libkmlxsd1:amd64 (1.3.0-7) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libpopt0:amd64 (1.16-12) ... Setting up maq (0.7.1-8) ... Setting up gnupg-utils (2.2.12-1+deb10u2) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libgflags2.2 (2.2.2-1) ... Setting up libaprutil1:amd64 (1.6.1-4) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up libkmldom1:amd64 (1.3.0-7) ... Setting up libncbi6:amd64 (6.1.20170106+dfsg1-0+deb10u2) ... Setting up libspatialite7:amd64 (4.3.0a-5+b2) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libwagon-provider-api-java (3.3.1-2) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up glib-networking-services (2.58.0-2+deb10u2) ... Setting up fonts-noto-hinted (20181227-1) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up gromacs-data (2019.1-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up libogdi3.2 (3.2.1+ds-4) ... Setting up libplexus-io-java (3.1.1-1) ... Setting up libboost-regex1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libharfbuzz-icu0:amd64 (2.3.1-1) ... Setting up exim4-base (4.92-8+deb10u6) ... Installing new version of config file /etc/cron.daily/exim4-base ... Installing new version of config file /etc/init.d/exim4 ... Setting up libsaxonhe-java (9.9.0.2+dfsg-1) ... Setting up gpg-agent (2.2.12-1+deb10u2) ... Setting up libatlas3-base:amd64 (3.10.3-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libkmlengine1:amd64 (1.3.0-7) ... Setting up libcolamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libwoff1:amd64 (1.0.2-1) ... Setting up libkmlconvenience1:amd64 (1.3.0-7) ... Setting up libboost-thread1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libfreecontact0v5:amd64 (1.0.21-7+b1) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up guile-2.0-libs:amd64 (2.0.13+1-5.1) ... Setting up libcglib-java (3.2.10-1) ... Setting up libgkl-java (0.8.5+dfsg-2) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up ttf-adf-accanthis (0.20110505-3) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up gpgsm (2.2.12-1+deb10u2) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Setting up libheif1:amd64 (1.3.2-2~deb10u1) ... Setting up libtbb2:amd64 (2018~U6-4) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libarpack2:amd64 (3.7.0-2) ... Setting up ttf-adf-universalis (0.20110505-3) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Setting up bc (1.07.1-2+b1) ... Setting up libdap25:amd64 (3.20.3-1) ... Setting up libsisu-inject-java (0.3.3-1) ... Setting up libsisu-ioc-java (2.3.0-11) ... Setting up clonalframe (1.2-9) ... Setting up binutils (2.31.1-16) ... Setting up libmbedtls-dev:amd64 (2.16.0-1) ... Setting up libncbi-vdb2 (2.9.3+dfsg-2) ... Setting up clustalo (1.2.4-2) ... Setting up libaprutil1-ldap:amd64 (1.6.1-4) ... Setting up tm-align (20170708+dfsg-2) ... Setting up dssp (3.0.0-3+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libepsilon1:amd64 (0.9.2+dfsg-4) ... Setting up biosquid (1.9g+cvs20050121-11) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-4) ... Setting up libdapserver7v5:amd64 (3.20.3-1) ... Setting up python2 (2.7.16-1) ... Setting up libatk-bridge2.0-0:amd64 (2.30.0-5) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up dirmngr (2.2.12-1+deb10u2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.3-3) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up dbus-user-session (1.12.20-0+deb10u1) ... Setting up libmaven-resolver-java (1.3.1-1) ... Setting up libmagickcore-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up libgeotiff2:amd64 (1.4.3-1) ... Setting up libblas3:amd64 (3.8.0-2) ... Setting up libunbound8:amd64 (1.9.0-2+deb10u2) ... Setting up libanfo0 (0.98-7) ... Setting up libptexenc1:amd64 (2018.20181218.49446-1) ... Setting up pandoc (2.2.1-3+b2) ... Setting up libncbi-wvdb2 (2.9.3+dfsg-2) ... Setting up libkmlregionator1:amd64 (1.3.0-7) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libstreambuffer-java (1.5.4-1) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up gnupg-agent (2.2.12-1+deb10u2) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up texlive-fonts-extra-links (2018.20190227-2) ... Setting up genometools (1.5.10+ds-3) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up gpg-wks-server (2.2.12-1+deb10u2) ... Setting up libcups2:amd64 (2.2.10-6+deb10u6) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up libjansi-native-java (1.8-1) ... Setting up libhttpclient-java (4.5.7-1+deb10u1) ... Setting up libgdk-pixbuf2.0-bin (2.38.1+dfsg-1) ... Setting up cpp (4:8.3.0-1) ... Setting up lmodern (2.004.5-6) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libmagickwand-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up libboost-filesystem1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up theseus (3.3.0-8) ... Setting up liblightcouch-java (0.0.6-1) ... Setting up libwagon-http-java (3.3.1-2) ... Setting up mira-assembler (4.9.6-4+b1) ... Setting up glib-networking:amd64 (2.58.0-2+deb10u2) ... Setting up lynx (2.8.9rel.1-3+deb10u1) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up libarmadillo9 (1:9.200.7+dfsg-1) ... Setting up python (2.7.16-1) ... Setting up libgromacs4:amd64 (2019.1-1) ... Setting up libicu-dev:amd64 (63.1-6+deb10u3) ... Setting up libgoogle-glog0v5 (0.3.5-1) ... Setting up tex-gyre (20180621-3) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up anfo (0.98-7) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up flexbar (1:3.4.0-2) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up gtk-update-icon-cache (3.24.5-1) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libgnutls-dane0:amd64 (3.6.7-4+deb10u8) ... Setting up liblapack3:amd64 (3.8.0-2) ... Setting up libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up gcc-8 (8.3.0-6) ... Setting up gpg-wks-client (2.2.12-1+deb10u2) ... Setting up bowtie (1.2.2+dfsg-4) ... Setting up libmagickcore-6.q16-6-extra:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up libcassie1v5 (1.0.9-2) ... Setting up python-numpy (1:1.16.2-1) ... Setting up libmaven3-core-java (3.6.0-1) ... Setting up libgbm1:amd64 (18.3.6-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up gatb-core (1.4.1+git20181225.44d5a44+dfsg-3) ... Setting up libgtk-3-0:amd64 (3.24.5-1) ... Setting up aevol (5.0-2+b1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up libruby2.5:amd64 (2.5.5-3+deb10u4) ... Setting up gfortran-8 (8.3.0-6) ... Setting up liblog4j2-java (2.17.1-1~deb10u1) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up openjdk-11-jre-headless:amd64 (11.0.16+8-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing obsolete conffile /etc/drirc ... Setting up zalign (0.9.1-4) ... Setting up cassiopee (1.0.9-2) ... Setting up libpq5:amd64 (11.16-0+deb10u1) ... Setting up libgsasl7 (1.8.0-8+deb10u1) ... Setting up libboost-mpi1.67.0 (1.67.0-13+deb10u1) ... Setting up libgtk-3-bin (3.24.5-1) ... Setting up python-gtk2 (2.24.0-5.1+b1) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up ampliconnoise (1.29-8) ... Setting up kissplice (2.4.0-p1-4) ... Setting up libnetcdf13:amd64 (1:4.6.2-1) ... Setting up dconf-service (0.30.1-2) ... Setting up python3 (3.7.3-1) ... Setting up python-pil:amd64 (5.4.1-2+deb10u3) ... Setting up libreadline-dev:amd64 (7.0-5) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up libkdf5-2 (2.9.3+dfsg-2) ... Setting up x11-xserver-utils (7.7+8) ... Setting up nodejs (10.24.0~dfsg-1~deb10u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up gromacs (2019.1-1) ... Setting up python3-webencodings (0.5.1-1) ... Setting up python3-psutil (5.5.1-1) ... Setting up gcc (4:8.3.0-1) ... Setting up libcupsimage2:amd64 (2.2.10-6+deb10u6) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up autodock-vina (1.1.2-5+b1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-isodate (0.6.0-1) ... Setting up python3-pil:amd64 (5.4.1-2+deb10u3) ... Setting up python-networkx (2.2-1) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up perl (5.28.1-6+deb10u1) ... Removing obsolete conffile /etc/perl/sitecustomize.pl ... Setting up libpackage-stash-xs-perl (0.29-1) ... Setting up libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libcaf-openmpi-3:amd64 (2.4.0-2) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up python-configparser (3.5.0b2-1) ... Setting up liblog-log4perl-perl (1.49-1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u4) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up libdata-dump-perl (1.23-1) ... Setting up python3-certifi (2018.8.24-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libref-util-perl (0.204-1) ... Setting up libjansi-java (1.17.1-1) ... Setting up python3-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Setting up r-base-core (3.5.2-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Installing new version of config file /etc/R/Rprofile.site ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4) ... Setting up ffindex (0.9.9.9-2) ... Setting up libemail-date-format-perl (1.005-1) ... Setting up mariadb-client-10.3 (1:10.3.34-0+deb10u1) ... Installing new version of config file /etc/mysql/mariadb.conf.d/50-client.cnf ... Setting up r-cran-multicore (0.2-1+b2) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up python-biopython (1.73+dfsg-1) ... Setting up libvariable-magic-perl (0.62-1+b1) ... Setting up python3-idna (2.6-1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libace-perl (1.92-8+b1) ... Setting up r-cran-sourcetools (0.1.7-2) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up python-mpi4py (2.0.0-3+b3) ... Setting up python3-typing-extensions (3.7.2-1) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up python-backports.functools-lru-cache (1.5-3) ... Setting up python3-html5lib (1.0.1-1) ... Setting up r-cran-nlme (3.1.137-1+b3) ... Setting up libparams-util-perl (1.07-3+b4) ... Setting up autoconf (2.69-11) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-reportlab (3.5.13-1+deb10u1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up python3-ruamel.yaml (0.15.34-1+b1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libtype-tiny-xs-perl (0.014-1+b1) ... Setting up g++-8 (8.3.0-6) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up python-glade2 (2.24.0-5.1+b1) ... Setting up python-kiwisolver (1.0.1-2+b1) ... Setting up python-scandir (1.9.0-2) ... Setting up r-cran-g.data (2.4-3) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u4) ... Setting up libmime-charset-perl (1.012.2-1) ... Setting up python3-rdflib (4.2.2-2) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up r-cran-cluster (2.0.7-1-1+b3) ... Setting up libncurses5-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdapclient6v5:amd64 (3.20.3-1) ... Setting up libegl1:amd64 (1.1.0-1) ... Setting up gnupg (2.2.12-1+deb10u2) ... Setting up libfcgi-perl (0.78-2+b3) ... Setting up libsub-uplevel-perl (0.2800-1) ... Setting up discosnp (2.3.0-2) ... Setting up r-cran-nnet (7.3-12-2+b2) ... Setting up python3-dateutil (2.7.3-3) ... Setting up emboss-lib (6.6.0+dfsg-7+b1) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b2) ... Setting up r-cran-lazyeval (0.2.1-3) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up python3-shellescape (3.4.1-3) ... Setting up r-cran-r6 (2.4.0-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up libterm-readkey-perl (2.38-1) ... Setting up python-future (0.16.0-1) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up libparams-validate-perl (1.29-1+b1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python-scipy (1.1.0-7) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libperlio-gzip-perl (0.19-1+b5) ... Setting up tabix (1.9-12~deb10u1) ... Setting up python-olefile (0.46-1) ... Setting up libsys-hostname-long-perl (1.5-1) ... Setting up python3-mistune (0.8.4-1) ... Setting up libalgorithm-diff-xs-perl (0.04-5+b1) ... Setting up r-cran-magrittr (1.5-5) ... Setting up python3-soupsieve (1.8+dfsg-1) ... Setting up r-cran-testit (0.9-1) ... Setting up exim4-daemon-light (4.92-8+deb10u6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libwayland-egl1-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libstaden-read13:amd64 (1.14.11-6) ... Setting up libdbi-perl:amd64 (1.642-1+deb10u2) ... Setting up openmpi-bin (3.1.3-11) ... Installing new version of config file /etc/openmpi/openmpi-mca-params.conf ... update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20180621-2) ... Setting up libbarclay-java (2.1.0-3) ... Setting up staden-io-lib-utils (1.14.11-6) ... Setting up libmailutils5:amd64 (1:3.5-4) ... Setting up r-cran-littler (0.3.6-1) ... Setting up libnet-ssleay-perl (1.85-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up r-cran-permute (0.9-4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.7.3-1) ... Setting up python3-elasticsearch (5.4.0-1) ... Setting up libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up sra-toolkit (2.9.3+dfsg-1+b1) ... Installing new version of config file /etc/ncbi/default.kfg ... Setting up r-cran-filehash (2.4-1-3) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up python3-lockfile (1:0.12.2-2) ... Setting up r-cran-codetools (0.2-16-1) ... Setting up node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up r-cran-bindr (0.1.1-2) ... Setting up r-cran-boot (1.3-20-2) ... Setting up python3-rdflib-jsonld (0.4.0-4) ... Setting up mailutils (1:3.5-4) ... Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up r-bioc-biocgenerics (0.28.0-2) ... Setting up r-other-mott-happy.hbrem (2.4-3) ... Setting up r-cran-rlang (0.3.1-2) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b7) ... Setting up r-cran-assertthat (0.2.0-2) ... Setting up python3-renderpm:amd64 (3.5.13-1+deb10u1) ... Setting up pvm (3.4.6-2) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode Setting up libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Setting up littler (0.3.6-1) ... Setting up emboss (6.6.0+dfsg-7+b1) ... Setting up python3-sparqlwrapper (1.8.2-0.1) ... Setting up libgs9:amd64 (9.27~dfsg-2+deb10u5) ... Setting up default-jre-headless (2:1.11-71) ... Setting up r-cran-bindrcpp (0.2.2-2) ... Setting up libwww-perl (6.36-2) ... Setting up libconvert-binary-c-perl (0.78-1+b4) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up r-cran-qtl (1.44-9-1) ... Setting up ruby2.5 (2.5.5-3+deb10u4) ... Setting up dconf-gsettings-backend:amd64 (0.30.1-2) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtest-deep-perl (1.128-1) ... Setting up libref-util-xs-perl (0.117-1+b1) ... Setting up r-cran-pvclust (2.0-0-4) ... Setting up perl-tk (1:804.033-2+b3) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up r-cran-xfun (0.4-1) ... Setting up libmime-lite-perl (3.030-2) ... Setting up libmime-types-perl (2.17-1) ... Setting up libfile-fcntllock-perl (0.22-3+b5) ... Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-backports (1.1.3-1) ... Setting up libclone-perl (0.41-1+b1) ... Setting up python3-typed-ast (1.3.1-1) ... Setting up libsub-identify-perl (0.14-1+b1) ... Setting up freecontact (1.0.21-7+b1) ... Setting up prime-phylo (1.0.11-7+b1) ... Setting up r-cran-mime (0.6-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up r-cran-praise (1.0.0-3) ... Setting up python-matplotlib (2.2.3-6) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up r-cran-base64enc (0.1-3-2) ... Setting up libscalar-list-utils-perl (1:1.50-1+b1) ... Setting up libtest-warn-perl (0.36-1) ... Setting up r-cran-spatial (7.3-11-2+b2) ... Setting up python3-mypy-extensions (0.4.1-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up python3-olefile (0.46-1) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-yaml (2.2.0-1) ... Setting up libipc-sharelite-perl (0.17-4+b3) ... Setting up r-cran-xml2 (1.2.0-3) ... Setting up r-cran-evaluate (0.13-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up r-cran-dbi (1.0.0-2) ... Setting up r-cran-highr (0.7+dfsg-1) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up r-cran-prettyunits (1.0.2-3) ... Setting up r-cran-fansi (0.4.0-1) ... Setting up libtest-differences-perl (0.65-1) ... Setting up python-pathlib2 (2.3.3-1) ... Setting up hyphy-mpi (2.3.14+dfsg-1) ... Setting up r-cran-mass (7.3-51.1-1) ... Setting up libpoppler82:amd64 (0.71.0-5) ... Setting up perl-doc (5.28.1-6+deb10u1) ... Setting up libnet-dbus-perl (1.1.0-5+b1) ... Setting up r-cran-mockr (0.1-2) ... Setting up libbsd-resource-perl (1.2911-1+b3) ... Setting up python3-yaml (3.13-2) ... Setting up libpadwalker-perl (2.3-1+b1) ... Setting up rename (1.10-1) ... Setting up libdbd-pg-perl (3.7.4-3) ... Setting up libipc-shareable-perl (0.61-2) ... Setting up libexception-class-perl (1.44-1) ... Setting up libfindbin-libs-perl (2.190.02-1) ... Setting up hhsuite (3.0~beta3+dfsg-3) ... Setting up libclass-c3-perl (0.34-1) ... Setting up python-cogent (1.9-14) ... Setting up ghostscript (9.27~dfsg-2+deb10u5) ... Setting up r-cran-data.table (1.12.0+dfsg-1) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-foreign (0.8.71-1) ... Setting up apache2-bin (2.4.38-3+deb10u8) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up r-cran-bit (1.1-14-1+b1) ... Setting up python3-networkx (2.2-1) ... Setting up r-cran-xtable (1:1.8-3-1) ... Setting up libclass-c3-xs-perl (0.14-1+b3) ... Setting up r-cran-cli (1.0.1-1) ... Setting up gfortran (4:8.3.0-1) ... Setting up libdevel-caller-perl (2.06-2+b1) ... Setting up r-cran-rprojroot (1.3-2-2) ... Setting up libmath-random-mt-perl (1.17-1+b5) ... Setting up r-cran-bit64 (0.9-7-3) ... Setting up python3-bs4 (4.7.1-1) ... Setting up libsub-install-perl (0.928-1) ... Setting up python3-prov (1.5.2-1) ... Setting up samtools (1.9-4) ... Setting up libbit-vector-perl (7.4-1+b5) ... Setting up libegl1-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up r-cran-png (0.1-7-3) ... Setting up libmail-sendmail-perl (0.80-1) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libgd-perl (2.71-2) ... Setting up r-cran-pkgconfig (2.0.2-1) ... Setting up r-cran-testthat (2.0.1-1) ... Setting up libunicode-map-perl (0.112-12+b1) ... Setting up libdevel-lexalias-perl (0.05-2+b1) ... Setting up libmath-tamuanova-perl (1.0.2-2+b7) ... Setting up ruby (1:2.5.1) ... Setting up exim4 (4.92-8+deb10u6) ... Setting up r-cran-sp (1:1.3-1-1) ... Setting up r-cran-utf8 (1.1.4-1+b1) ... Setting up python3-chardet (3.0.4-3) ... Setting up r-cran-mockery (0.4.1.1+dfsg-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up r-cran-stringi (1.2.4-2) ... Setting up libtest-exception-perl (0.43-1) ... Setting up abyss (2.1.5-7) ... Setting up r-cran-markdown (0.9+dfsg-1) ... Setting up tophat (2.1.1+dfsg1-2+b1) ... Setting up libapache2-mod-perl2 (2.0.10-3) ... Setting up libunicode-linebreak-perl (0.0.20190101-1) ... Setting up r-cran-runit (0.4.32-2) ... Setting up python3-requests (2.21.0-1) ... Setting up r-cran-hms (0.4.2-2) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-memoise (1.1.0-2) ... Setting up r-bioc-limma (3.38.3+dfsg-1) ... Setting up r-bioc-hilbertvis (1.40.0-1) ... Setting up libdbd-mysql-perl:amd64 (4.050-2) ... Setting up python3-mypy (0.670-2) ... Setting up r-cran-purrr (0.3.0-1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up r-cran-later (0.7.5+dfsg-2) ... Setting up r-cran-blob (1.1.1-2) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up libxml-libxslt-perl (1.96-1+b1) ... Setting up r-cran-htmltools (0.3.6-2) ... Setting up r-cran-tinytex (0.10-1) ... Setting up r-cran-kernsmooth (2.23-15-3+b4) ... Setting up r-cran-mgcv (1.8-27-1) ... Setting up libgl1-mesa-glx:amd64 (18.3.6-2+deb10u1) ... Setting up g++ (4:8.3.0-1) ... Setting up texlive-binaries (2018.20181218.49446-1) ... Setting up r-cran-tikzdevice (0.12-1) ... Setting up x11-utils (7.7+4) ... Installing new version of config file /etc/X11/app-defaults/Editres ... Setting up build-essential (12.6) ... Setting up libdbd-sqlite3-perl:amd64 (1.62-3) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up python3-cachecontrol (0.11.7-1) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libmro-compat-perl (0.13-1) ... Setting up python3-future (0.16.0-1) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-biopython (1.73+dfsg-1) ... Setting up libnamespace-autoclean-perl (0.28-1) ... Setting up r-cran-rsqlite (2.1.1-2+b1) ... Setting up raster3d (3.0-3-5) ... Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up r-cran-pillar (1.3.1-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up texlive-fonts-recommended-doc (2018.20190227-2) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libparams-validationcompiler-perl (0.30-1) ... Setting up r-base-dev (3.5.2-1) ... Setting up python3-scipy (1.1.0-7) ... Setting up python-pysam (0.15.2+ds-2) ... Setting up texlive-latex-extra-doc (2018.20190227-2) ... Setting up r-cran-stringr (1.4.0-1) ... Setting up python2-dev (2.7.16-1) ... Setting up r-cran-class (7.3-15-1) ... Setting up texlive-pstricks-doc (2018.20190227-2) ... Setting up altree (1.3.1-7+b1) ... Setting up libdate-calc-xs-perl (6.4-1+b4) ... Setting up libtest-most-perl (0.35-1) ... Setting up libcoarrays-dev:amd64 (2.4.0-2) ... Setting up r-cran-desc (1.2.0-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up texlive-plain-generic (2018.20190227-2) ... Setting up python3-schema-salad (3.0.20181206233650-2) ... Setting up r-cran-tibble (2.0.1-1) ... Setting up r-cran-survival (2.43-3-1) ... Setting up openjdk-11-jre:amd64 (11.0.16+8-1~deb10u1) ... Setting up cwltool (1.0.20181217162649+dfsg-10) ... Setting up default-jre (2:1.11-71) ... Setting up texlive-font-utils (2018.20190227-2) ... Setting up libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Setting up libwxgtk3.0-gtk3-0v5:amd64 (3.0.4+dfsg-8) ... Setting up python-pyglet (1.3.0-1) ... Setting up r-cran-htmlwidgets (1.3+dfsg-1) ... Setting up r-cran-tidyselect (0.2.5-1) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up beignet-opencl-icd:amd64 (1.3.2-6+b10) ... Setting up libwxgtk3.0-0v5:amd64 (3.0.4+dfsg-8) ... Setting up libspecio-perl (0.43-1) ... Setting up python3-biomaj3-core (3.0.15-1) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up texlive-extra-utils (2018.20190227-2) ... Setting up texlive-fonts-extra (2018.20190227-2) ... Setting up texlive-latex-recommended (2018.20190227-2) ... Setting up python3-biomaj3-cli (3.1.10-1) ... Setting up r-cran-promises (1.0.1-2) ... Setting up r-cran-vegan (2.5-4+dfsg-3) ... Setting up texlive-fonts-extra-doc (2018.20190227-2) ... Setting up texlive-generic-recommended (2018.20190227-2) ... Setting up texlive-pictures (2018.20190227-2) ... Setting up r-cran-dbitest (1.5-2-2) ... Setting up texlive-latex-recommended-doc (2018.20190227-2) ... Setting up r-cran-knitr (1.21+dfsg-2) ... Setting up texlive-fonts-recommended (2018.20190227-2) ... Setting up liblog-dispatch-perl (2.68-1) ... Setting up r-cran-dplyr (0.7.8-1) ... Setting up texlive-pictures-doc (2018.20190227-2) ... Setting up texlive-latex-base-doc (2018.20190227-2) ... Setting up python-dev (2.7.16-1) ... Setting up texlive-pstricks (2018.20190227-2) ... Setting up bioperl (1.7.2-3) ... Setting up r-cran-lubridate (1.7.4-2) ... Setting up python-wxgtk3.0 (3.0.2.0+dfsg-8) ... update-alternatives: using /usr/lib/wx/python/wx3.0.pth to provide /usr/lib/wx/python/wx.pth (wx.pth) in auto mode Setting up texlive-generic-extra (2018.20190227-2) ... Setting up r-cran-httpuv (1.4.5.1+dfsg-1) ... Setting up libhmsbeagle1v5 (3.1.2+dfsg-6) ... Setting up r-cran-rpart (4.1-13-1+b1) ... Setting up texlive-latex-extra (2018.20190227-2) ... Setting up r-cran-shiny (1.2.0+dfsg-1) ... Setting up r-cran-rmarkdown (1.11+dfsg-1) ... Setting up r-recommended (3.5.2-1) ... Setting up prosper (2018.20190227-2) ... Setting up odbcinst (2.3.6-0.1) ... Setting up libistack-commons-java (3.0.6-3) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-8) ... Setting up odbcinst1debian2:amd64 (2.3.6-0.1) ... Setting up libgdal20 (2.4.0+dfsg-1+b1) ... Setting up libtxw2-java (2.3.0.1-8) ... Setting up python3-gdal (2.4.0+dfsg-1+b1) ... Setting up libjaxb-java (2.3.0.1-8) ... Setting up python-gdal (2.4.0+dfsg-1+b1) ... Setting up libhtsjdk-java (2.18.2+dfsg-2) ... Setting up fastqc (0.11.8+dfsg-2) ... Installing new version of config file /etc/fastqc/Configuration/adapter_list.txt ... Installing new version of config file /etc/fastqc/Configuration/contaminant_list.txt ... Installing new version of config file /etc/fastqc/Configuration/limits.txt ... Setting up libpicard-java (2.18.25+dfsg-2) ... Setting up picard-tools (2.18.25+dfsg-2) ... Processing triggers for tex-common (6.11) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for dbus (1.12.20-0+deb10u1) ... Processing triggers for shared-mime-info (1.10-1) ... Processing triggers for menu (2.1.47+b1) ... Setting up default-mysql-client (1.0.5) ... Processing triggers for fontconfig (2.13.1-2) ... Setting up med-config (3.3) ... Processing triggers for mime-support (3.62) ... Processing triggers for hicolor-icon-theme (0.17-2) ... Setting up med-cloud (3.3) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for systemd (241-7~deb10u8) ... Setting up mapsembler2 (2.2.4+dfsg-3+b1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 21m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-yf', 'dist-upgrade'] 21m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 21m5.9s DUMP: f6fc0f2636004ef589309651dfd778f4 - 21m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 21m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 21m6.7s DUMP: Package: med-cloud Source: debian-med Version: 3.3 Installed-Size: 37 Maintainer: Debian Med Packaging Team Architecture: all Depends: med-config (= 3.3), med-tasks (= 3.3) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, anfo, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, blast2, bowtie, bowtie2, boxshade, bwa, cain, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fastx-toolkit, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, giira, glam2, grinder, gromacs, hhsuite, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, pynast, python-biopython, python-cogent, python3-biomaj3-cli, python3-biopython, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tophat, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise, zalign Suggests: bagpipe, cufflinks, embassy-phylip, gmap, qiime Description-en: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. Description-md5: 8580600ffc7b786c93529ecf82882c1a Tag: field::biology:molecular, role::metapackage Section: misc Priority: optional Filename: pool/main/d/debian-med/med-cloud_3.3_all.deb Size: 17044 MD5sum: c594cf82f07cba8468eabaac91a25437 SHA256: ad79d990fc5ad88107744482ca476abebc70483b9ec4d036993c2cad972829e0 21m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'show', '--no-all-versions', 'med-cloud'] 21m6.8s INFO: apt-cache knows about the following packages: med-cloud 21m6.9s INFO: Running scripts pre_install 21m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_database-server'] 21m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_database-server'] 21m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_exceptions'] 21m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_exceptions'] 21m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_extras'] 21m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_extras'] 21m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture'] 21m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture'] 21m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 21m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 21m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy'] 21m7.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 21m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy'] 21m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy', 'med-cloud'] 21m7.6s DUMP: med-cloud: Installed: 3.3 Candidate: 3.3 Version table: *** 3.3 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 21m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy', 'med-cloud'] 21m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'install', 'med-cloud'] 21m8.2s DUMP: Reading package lists... Building dependency tree... Reading state information... med-cloud is already the newest version (3.3). The following packages were automatically installed and are no longer required: ant-contrib biomaj cdbs default-mysql-client dh-python exim4 fonts-roboto-hinted gnupg-agent guile-2.0-libs isympy isympy-common libaio1 libann0 libart-2.0-2 libaudio2 libaxis-java libbamtools2.4.0 libbcprov-java libblas-common libboost-filesystem1.62.0 libboost-iostreams1.62.0 libboost-mpi1.62.0 libboost-program-options1.62.0 libboost-regex1.62.0 libboost-serialization1.62.0 libboost-system1.62.0 libboost-thread1.62.0 libcommons-discovery-java libcommons-httpclient-java libconfig-inifiles-perl libegl1-mesa libgdbm3 libgflags2v5 libglade2-0 libgromacs2 libhpdf-2.2.1 libhts1 libicu4j-java libicu57 libilmbase12 libintellij-annotations-java libjava-xmlbuilder-java libjcommon-java libjemalloc1 libjetbrains-annotations-java libjets3t-java libjgoodies-common-java libjgoodies-forms-java libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickwand-6.q16-3 libmbedcrypto0 libmbedtls10 libmng1 libmysql-java libncurses5 libngs-sdk1 libopenexr22 libopenmpi2 libperl5.24 libpoppler64 libprocps6 libprotobuf10 libpython3.5-minimal libpython3.5-stdlib libqt4-dbus libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libreadline5 libruby2.3 libsaxonhe-java libssl1.0.2 libstaden-read11 libsuitesparseconfig4 libsynctex1 libterm-readkey-perl libtinfo-dev libtxc-dxtn-s2tc libunistring0 libwayland-egl1-mesa libwebpmux2 libwsdl4j-java libwxgtk3.0-0v5 libxerces-c3.1 mariadb-client-10.3 mariadb-client-core-10.3 prosper python-cairo python-functools32 python-glade2 python-gtk2 python-imaging python-matplotlib-data python3.5 python3.5-minimal qdbus qt-at-spi qtchooser qtcore4-l10n r-bioc-biocgenerics r-bioc-limma rename ruby2.3 sgml-base tcpd texlive-generic-extra ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 21m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'install', 'med-cloud'] 21m8.2s INFO: Running scripts post_install 21m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_install_exceptions'] 21m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_install_exceptions'] 21m8.2s INFO: Running scripts post_distupgrade 21m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_base_cleanup'] 21m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_base_cleanup'] 21m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_exceptions'] 21m8.3s DUMP: Normalized /etc/ca-certificates.conf removed empty directory '/etc/dbus-1/system.d' mode of '/var/lib/polkit-1' changed from 0755 (rwxr-xr-x) to 0700 (rwx------) 21m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_exceptions'] 21m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 21m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 21m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 21m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 21m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_zz_backports'] 21m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_distupgrade_zz_backports'] 21m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 21m16.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 21m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 21m24.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 21m24.3s INFO: Running scripts pre_install 21m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_database-server'] 21m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_database-server'] 21m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_exceptions'] 21m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_exceptions'] 21m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_extras'] 21m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_extras'] 21m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture'] 21m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture'] 21m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 21m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 21m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy'] 21m24.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 21m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy'] 21m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy', 'med-cloud'] 21m24.5s DUMP: med-cloud: Installed: 3.3 Candidate: 3.3 Version table: *** 3.3 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 21m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-cache', 'policy', 'med-cloud'] 21m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'install', 'med-cloud=3.3'] 21m24.9s DUMP: Reading package lists... Building dependency tree... Reading state information... med-cloud is already the newest version (3.3). The following packages were automatically installed and are no longer required: ant-contrib biomaj cdbs default-mysql-client dh-python exim4 fonts-roboto-hinted gnupg-agent guile-2.0-libs isympy isympy-common libaio1 libann0 libart-2.0-2 libaudio2 libaxis-java libbamtools2.4.0 libbcprov-java libblas-common libboost-filesystem1.62.0 libboost-iostreams1.62.0 libboost-mpi1.62.0 libboost-program-options1.62.0 libboost-regex1.62.0 libboost-serialization1.62.0 libboost-system1.62.0 libboost-thread1.62.0 libcommons-discovery-java libcommons-httpclient-java libconfig-inifiles-perl libegl1-mesa libgdbm3 libgflags2v5 libglade2-0 libgromacs2 libhpdf-2.2.1 libhts1 libicu4j-java libicu57 libilmbase12 libintellij-annotations-java libjava-xmlbuilder-java libjcommon-java libjemalloc1 libjetbrains-annotations-java libjets3t-java libjgoodies-common-java libjgoodies-forms-java libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickwand-6.q16-3 libmbedcrypto0 libmbedtls10 libmng1 libmysql-java libncurses5 libngs-sdk1 libopenexr22 libopenmpi2 libperl5.24 libpoppler64 libprocps6 libprotobuf10 libpython3.5-minimal libpython3.5-stdlib libqt4-dbus libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libreadline5 libruby2.3 libsaxonhe-java libssl1.0.2 libstaden-read11 libsuitesparseconfig4 libsynctex1 libterm-readkey-perl libtinfo-dev libtxc-dxtn-s2tc libunistring0 libwayland-egl1-mesa libwebpmux2 libwsdl4j-java libwxgtk3.0-0v5 libxerces-c3.1 mariadb-client-10.3 mariadb-client-core-10.3 prosper python-cairo python-functools32 python-glade2 python-gtk2 python-imaging python-matplotlib-data python3.5 python3.5-minimal qdbus qt-at-spi qtchooser qtcore4-l10n r-bioc-biocgenerics r-bioc-limma rename ruby2.3 sgml-base tcpd texlive-generic-extra ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 21m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', '-y', 'install', 'med-cloud=3.3'] 21m24.9s INFO: Running scripts post_install 21m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_install_exceptions'] 21m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_install_exceptions'] 21m28.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 21m37.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 21m53.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', '-ac', '--ignore-obsolete'] 29m58.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', '-ac', '--ignore-obsolete'] 29m58.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 29m58.2s DUMP: 0.15.6 29m58.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 29m58.2s INFO: Running adequate version 0.15.6 now. 29m58.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'med-cloud'] 29m58.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'med-cloud'] 29m58.3s INFO: Running scripts pre_remove 29m58.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 29m58.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 29m58.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 29m58.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 29m58.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 32m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 32m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 32m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 32m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 32m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 32m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_exceptions'] 32m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/pre_remove_exceptions'] 32m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 32m28.6s DUMP: install ok installed abyss abyss 2.1.5-7 install ok installed acedb-other acedb-other 4.9.39+dfsg.02-4 install ok installed adduser adduser 3.118 install ok installed adwaita-icon-theme adwaita-icon-theme 3.30.1-1 install ok installed aevol aevol 5.0-2+b1 install ok installed alien-hunter alien-hunter 1.7-7 install ok installed altree altree 1.3.1-7+b1 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-1 install ok installed ampliconnoise ampliconnoise 1.29-8 install ok installed anfo anfo 0.98-7 install ok installed ant ant 1.10.5-2 install ok installed ant-contrib ant-contrib 1.0~b3+svn177-10 install ok installed ant-optional ant-optional 1.10.5-2 install ok installed apache2-bin apache2-bin 2.4.38-3+deb10u8 install ok installed apt apt 1.8.2.3 install ok installed aragorn aragorn 1.2.38-2 install ok installed arden arden 1.0-4 install ok installed at-spi2-core at-spi2-core 2.30.0-7 install ok installed autoconf autoconf 2.69-11 install ok installed autodock autodock 4.2.6-6 install ok installed autodock-vina autodock-vina 1.1.2-5+b1 install ok installed autogrid autogrid 4.2.6-6 install ok installed automake automake 1:1.16.1-4 install ok installed autotools-dev autotools-dev 20180224.1 install ok installed bamtools bamtools 2.5.1+dfsg-3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bc bc 1.07.1-2+b1 install ok installed bedtools bedtools 2.27.1+dfsg-4 install ok installed beignet-opencl-icd:amd64 beignet-opencl-icd 1.3.2-6+b10 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed biomaj biomaj 1.2.3-11 install ok installed bioperl bioperl 1.7.2-3 install ok installed bioperl-run bioperl-run 1.7.2-4 install ok installed biosquid biosquid 1.9g+cvs20050121-11 install ok installed blast2 blast2 1:2.8.1-1+deb10u1 install ok installed blends-common blends-common 0.7.2 install ok installed blt blt 2.5.3+dfsg-4 install ok installed bowtie bowtie 1.2.2+dfsg-4 install ok installed bowtie2 bowtie2 2.3.4.3-1 install ok installed boxshade boxshade 3.3.1-12 install ok installed bsdmainutils bsdmainutils 11.1.2+b1 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed build-essential build-essential 12.6 install ok installed bwa bwa 0.7.17-3 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed bzip2-doc bzip2-doc 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed ca-certificates-java ca-certificates-java 20190405 install ok installed cain cain 1.10+dfsg-3 install ok installed cain-examples cain-examples 1.10+dfsg-3 install ok installed cain-solvers cain-solvers 1.10+dfsg-3 install ok installed cassiopee cassiopee 1.0.9-2 install ok installed cd-hit cd-hit 4.6.8-2 install ok installed cdbfasta cdbfasta 0.99-20100722-5 install ok installed cdbs cdbs 0.4.159 install ok installed circos circos 0.69.6+dfsg-2 install ok installed circos-tools circos-tools 0.23-1 install ok installed clearcut clearcut 1.0.9-3 install ok installed clonalframe clonalframe 1.2-9 install ok installed clustalo clustalo 1.2.4-2 install ok installed clustalw clustalw 2.1+lgpl-6 install ok installed concavity concavity 0.1+dfsg.1-4 install ok installed conservation-code conservation-code 20110309.0-7 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-6 cpp-6 6.3.0-18+deb9u1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed cron cron 3.0pl1-134+deb10u1 install ok installed cwltool cwltool 1.0.20181217162649+dfsg-10 install ok installed cython cython 0.29.2-2 install ok installed dash dash 0.5.10.2-5 install ok installed datamash datamash 1.4-1 install ok installed dbus dbus 1.12.20-0+deb10u1 install ok installed dbus-user-session dbus-user-session 1.12.20-0+deb10u1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.30.1-2 install ok installed dconf-service dconf-service 0.30.1-2 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed default-jre default-jre 2:1.11-71 install ok installed default-jre-headless default-jre-headless 2:1.11-71 install ok installed default-mysql-client default-mysql-client 1.0.5 install ok installed dh-python dh-python 3.20190308 install ok installed dialign dialign 2.2.1-10 install ok installed dialign-tx dialign-tx 1.0.2-12 install ok installed dialign-tx-data dialign-tx-data 1.0.2-12 install ok installed diffutils diffutils 1:3.7-3 install ok installed dirmngr dirmngr 2.2.12-1+deb10u2 install ok installed discosnp discosnp 2.3.0-2 install ok installed disulfinder disulfinder 1.2.11-8 install ok installed disulfinder-data disulfinder-data 1.2.11-8 install ok installed dmidecode dmidecode 3.2-1 install ok installed dmsetup dmsetup 2:1.02.155-3 install ok installed dnaclust dnaclust 3-6+b1 install ok installed dpkg dpkg 1.19.8 install ok installed dpkg-dev dpkg-dev 1.19.8 install ok installed dssp dssp 3.0.0-3+b1 install ok installed dvipng dvipng 1.15-1.1 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed embassy-domainatrix embassy-domainatrix 0.1.660-3 install ok installed embassy-domalign embassy-domalign 0.1.660-3 install ok installed embassy-domsearch embassy-domsearch 1:0.1.660-3 install ok installed emboss emboss 6.6.0+dfsg-7+b1 install ok installed emboss-data emboss-data 6.6.0+dfsg-7 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-7+b1 install ok installed exim4 exim4 4.92-8+deb10u6 install ok installed exim4-base exim4-base 4.92-8+deb10u6 install ok installed exim4-config exim4-config 4.92-8+deb10u6 install ok installed exim4-daemon-light exim4-daemon-light 4.92-8+deb10u6 install ok installed exonerate exonerate 2.4.0-4 install ok installed fakeroot fakeroot 1.23-1 install ok installed fastdnaml fastdnaml 1.2.2-14 install ok installed fastlink fastlink 4.1P-fix100+dfsg-2 install ok installed fastqc fastqc 0.11.8+dfsg-2 install ok installed fasttree fasttree 2.1.10-2 install ok installed fastx-toolkit fastx-toolkit 0.0.14-6 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed ffindex ffindex 0.9.9.9-2 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fitgcp fitgcp 0.0.20150429-2 install ok installed flexbar flexbar 1:3.4.0-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-adf-accanthis fonts-adf-accanthis 0.20110505-3 install ok installed fonts-adf-berenis fonts-adf-berenis 0.20110505-3 install ok installed fonts-adf-gillius fonts-adf-gillius 0.20110505-3 install ok installed fonts-adf-universalis fonts-adf-universalis 0.20110505-3 install ok installed fonts-cabin fonts-cabin 1.5-2 install ok installed fonts-circos-symbols fonts-circos-symbols 0.69.6+dfsg-2 install ok installed fonts-cmu fonts-cmu 0.7.0-3 install ok installed fonts-comfortaa fonts-comfortaa 3.001-2 install ok installed fonts-croscore fonts-croscore 20181227-1 install ok installed fonts-crosextra-caladea fonts-crosextra-caladea 20130214-2 install ok installed fonts-crosextra-carlito fonts-crosextra-carlito 20130920-1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-1 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-ebgaramond fonts-ebgaramond 0.016-1 install ok installed fonts-ebgaramond-extra fonts-ebgaramond-extra 0.016-1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-1 install ok installed fonts-freefont-otf fonts-freefont-otf 20120503-9 install ok installed fonts-freefont-ttf fonts-freefont-ttf 20120503-9 install ok installed fonts-gfs-artemisia fonts-gfs-artemisia 1.1-5 install ok installed fonts-gfs-complutum fonts-gfs-complutum 1.1-6 install ok installed fonts-gfs-didot fonts-gfs-didot 1.1-6 install ok installed fonts-gfs-neohellenic fonts-gfs-neohellenic 1.1-6 install ok installed fonts-gfs-olga fonts-gfs-olga 1.1-5 install ok installed fonts-gfs-solomos fonts-gfs-solomos 1.1-5 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed fonts-go fonts-go 0~20170330-1 install ok installed fonts-junicode fonts-junicode 1.001-2 install ok installed fonts-lato fonts-lato 2.0-2 install ok installed fonts-liberation fonts-liberation 1:1.07.4-9 install ok installed fonts-linuxlibertine fonts-linuxlibertine 5.3.0-4 install ok installed fonts-lmodern fonts-lmodern 2.004.5-6 install ok installed fonts-lobster fonts-lobster 2.0-2 install ok installed fonts-lobstertwo fonts-lobstertwo 2.0-2 install ok installed fonts-lyx fonts-lyx 2.3.2-1 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed fonts-noto-core fonts-noto-core 20181227-1 install ok installed fonts-noto-hinted fonts-noto-hinted 20181227-1 install ok installed fonts-noto-mono fonts-noto-mono 20181227-1 install ok installed fonts-noto-ui-core fonts-noto-ui-core 20181227-1 install ok installed fonts-oflb-asana-math fonts-oflb-asana-math 000.907-6 install ok installed fonts-open-sans fonts-open-sans 1.11-1 install ok installed fonts-roboto-hinted fonts-roboto-hinted 2:0~20170802-3 install ok installed fonts-roboto-unhinted fonts-roboto-unhinted 2:0~20170802-3 install ok installed fonts-sil-gentium fonts-sil-gentium 20081126:1.03-2 install ok installed fonts-sil-gentium-basic fonts-sil-gentium-basic 1.102-1 install ok installed fonts-sil-gentiumplus fonts-sil-gentiumplus 5.000-2 install ok installed fonts-sil-gentiumplus-compact fonts-sil-gentiumplus-compact 5.000-2 install ok installed fonts-stix fonts-stix 1.1.1-4 install ok installed fonts-texgyre fonts-texgyre 20180621-3 install ok installed freecontact freecontact 1.0.21-7+b1 install ok installed fsa fsa 1.15.9+dfsg-4 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-6 g++-6 6.3.0-18+deb9u1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gasic gasic 0.0.r19-4 install ok installed gatb-core gatb-core 1.4.1+git20181225.44d5a44+dfsg-3 install ok installed gawk gawk 1:4.2.1+dfsg-1 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-6 gcc-6 6.3.0-18+deb9u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-7-base:amd64 gcc-7-base 7.4.0-6 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gdal-data gdal-data 2.4.0+dfsg-1 install ok installed genometools genometools 1.5.10+ds-3 install ok installed genometools-common genometools-common 1.5.10+ds-3 install ok installed gff2aplot gff2aplot 2.0-11 install ok installed gff2ps gff2ps 0.98l-2 install ok installed gfortran gfortran 4:8.3.0-1 install ok installed gfortran-6 gfortran-6 6.3.0-18+deb9u1 install ok installed gfortran-8 gfortran-8 8.3.0-6 install ok installed ghostscript ghostscript 9.27~dfsg-2+deb10u5 install ok installed giira giira 0.0.20140625-2 install ok installed glam2 glam2 1064-5 install ok installed glib-networking:amd64 glib-networking 2.58.0-2+deb10u2 install ok installed glib-networking-common glib-networking-common 2.58.0-2+deb10u2 install ok installed glib-networking-services glib-networking-services 2.58.0-2+deb10u2 install ok installed glpk-utils glpk-utils 4.65-2 install ok installed gnome-icon-theme gnome-icon-theme 3.12.0-3 install ok installed gnupg gnupg 2.2.12-1+deb10u2 install ok installed gnupg-agent gnupg-agent 2.2.12-1+deb10u2 install ok installed gnupg-l10n gnupg-l10n 2.2.12-1+deb10u2 install ok installed gnupg-utils gnupg-utils 2.2.12-1+deb10u2 install ok installed gpg gpg 2.2.12-1+deb10u2 install ok installed gpg-agent gpg-agent 2.2.12-1+deb10u2 install ok installed gpg-wks-client gpg-wks-client 2.2.12-1+deb10u2 install ok installed gpg-wks-server gpg-wks-server 2.2.12-1+deb10u2 install ok installed gpgconf gpgconf 2.2.12-1+deb10u2 install ok installed gpgsm gpgsm 2.2.12-1+deb10u2 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed graphviz graphviz 2.40.1-6+deb10u1 install ok installed grep grep 3.3-1 install ok installed grinder grinder 0.5.4-5 install ok installed gromacs gromacs 2019.1-1 install ok installed gromacs-data gromacs-data 2019.1-1 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.28.1-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.4 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.5-1 install ok installed guile-2.0-libs:amd64 guile-2.0-libs 2.0.13+1-5.1 install ok installed guile-2.2-libs:amd64 guile-2.2-libs 2.2.4+1-2+deb10u1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hhsuite hhsuite 3.0~beta3+dfsg-3 install ok installed hhsuite-data hhsuite-data 3.0~beta3+dfsg-3 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hmmer hmmer 3.2.1+dfsg-1 install ok installed hostname hostname 3.21 install ok installed hyphy-common hyphy-common 2.3.14+dfsg-1 install ok installed hyphy-mpi hyphy-mpi 2.3.14+dfsg-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 22.1-1 install ok installed icu-devtools icu-devtools 63.1-6+deb10u3 install ok 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libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache-pom-java libapache-pom-java 18-1 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.10-3 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-2 install ok installed libapparmor1:amd64 libapparmor1 2.13.2-10 install ok installed libapr1:amd64 libapr1 1.6.5-1+b1 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-4 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-4 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libargon2-1:amd64 libargon2-1 0~20171227-0.2 install ok installed libargs4j-java libargs4j-java 2.33-1 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libarmadillo9 libarmadillo9 1:9.200.7+dfsg-1 install ok installed libarpack2:amd64 libarpack2 3.7.0-2 install ok installed libarray-compare-perl libarray-compare-perl 3.0.2-1 install ok installed libart-2.0-2:amd64 libart-2.0-2 2.3.21-4 install ok installed libasan3:amd64 libasan3 6.3.0-18+deb9u1 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libasm-java libasm-java 7.0-1 install ok installed libasound2:amd64 libasound2 1.1.8-1 install ok installed libasound2-data libasound2-data 1.1.8-1 install ok installed libassuan0:amd64 libassuan0 2.5.2-1 install ok installed libasyncns0:amd64 libasyncns0 0.8-6 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.30.0-5 install ok installed libatk-wrapper-java libatk-wrapper-java 0.33.3-22+deb10u1 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.33.3-22+deb10u1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.30.0-2 install ok installed libatk1.0-data libatk1.0-data 2.30.0-2 install ok installed libatlas3-base:amd64 libatlas3-base 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libboost-serialization1.62.0 1.62.0+dfsg-4 install ok installed libboost-serialization1.67.0:amd64 libboost-serialization1.67.0 1.67.0-13+deb10u1 install ok installed libboost-system1.62.0:amd64 libboost-system1.62.0 1.62.0+dfsg-4 install ok installed libboost-system1.67.0:amd64 libboost-system1.67.0 1.67.0-13+deb10u1 install ok installed libboost-thread1.62.0:amd64 libboost-thread1.62.0 1.62.0+dfsg-4 install ok installed libboost-thread1.67.0:amd64 libboost-thread1.67.0 1.67.0-13+deb10u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.7-2+deb10u1 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-1+b3 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbytecode-java libbytecode-java 0.92.svn.20090106-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-9.2~deb10u1 install ok installed libc-ares2:amd64 libc-ares2 1.14.0-1+deb10u1 install ok installed libc-bin 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libcdt5 2.40.1-6+deb10u1 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.13-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.40-1 install ok installed libcglib-java libcglib-java 3.2.10-1 install ok installed libcgraph6 libcgraph6 2.40.1-6+deb10u1 install ok installed libcharls2:amd64 libcharls2 2.0.0+dfsg-1 install ok installed libcilkrts5:amd64 libcilkrts5 7.4.0-6 install ok installed libclass-c3-perl libclass-c3-perl 0.34-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.14-1+b3 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.32-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.12-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-3+b2 install ok installed libclone-perl libclone-perl 0.41-1+b1 install ok installed libcoarrays-dev:amd64 libcoarrays-dev 2.4.0-2 install ok installed libcoarrays-openmpi-dev:amd64 libcoarrays-openmpi-dev 2.4.0-2 install ok installed libcodemodel-java libcodemodel-java 2.6+jaxb2.3.0.1-8 install ok installed libcolamd2:amd64 libcolamd2 1:5.4.0+dfsg-1 install ok installed libcolord2:amd64 libcolord2 1.4.3-4 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libcommons-cli-java libcommons-cli-java 1.4-1 install ok installed libcommons-codec-java libcommons-codec-java 1.11-1 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-2 install ok installed libcommons-compress-java libcommons-compress-java 1.18-2+deb10u1 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-6 install ok installed libcommons-discovery-java libcommons-discovery-java 0.5-3 install ok installed libcommons-httpclient-java libcommons-httpclient-java 3.1-15 install ok installed libcommons-io-java libcommons-io-java 2.6-2+deb10u1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-4 install ok installed libcommons-lang3-java libcommons-lang3-java 3.8-2 install ok installed libcommons-logging-java libcommons-logging-java 1.2-2 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-3 install ok installed libcommons-net-java libcommons-net-java 3.6-1 install ok installed libcommons-parent-java libcommons-parent-java 43-1 install ok installed libcommons-pool-java libcommons-pool-java 1.6-3 install ok installed libconfig-general-perl libconfig-general-perl 2.63-1 install ok installed libconfig-inifiles-perl libconfig-inifiles-perl 3.000001-1 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.78-1+b4 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcroco3:amd64 libcroco3 0.6.12-3 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-3 install ok installed libcryptsetup12:amd64 libcryptsetup12 2:2.1.0-5+deb10u2 install ok installed libcups2:amd64 libcups2 2.2.10-6+deb10u6 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.21.6-5 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.10-6+deb10u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdap25:amd64 libdap25 3.20.3-1 install ok installed libdapclient6v5:amd64 libdapclient6v5 3.20.3-1 install ok installed libdapserver7v5:amd64 libdapserver7v5 3.20.3-1 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1 install ok installed libdata-dumper-simple-perl libdata-dumper-simple-perl 0.11-5 install ok installed libdata-optlist-perl libdata-optlist-perl 0.110-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b4 install ok installed libdate-manip-perl libdate-manip-perl 6.76-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.7.4-3 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.62-3 install ok installed libdbi-perl:amd64 libdbi-perl 1.642-1+deb10u2 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.20-0+deb10u1 install ok installed libdconf1:amd64 libdconf1 0.30.1-2 install ok installed libde265-0:amd64 libde265-0 1.0.3-1+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdeflate0:amd64 libdeflate0 1.2-1 install ok installed libdevel-callchecker-perl libdevel-callchecker-perl 0.008-1 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-2+b1 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-2+b1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0300-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-3 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.155-3 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-4 install ok installed libdjvulibre-text libdjvulibre-text 3.5.27.1-10+deb10u1 install ok installed libdjvulibre21:amd64 libdjvulibre21 3.5.27.1-10+deb10u1 install ok installed libdom4j-java libdom4j-java 2.1.1-2 install ok installed libdpkg-perl libdpkg-perl 1.19.8 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.97-1 install ok installed libdrm-common libdrm-common 2.4.97-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.97-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.97-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.97-1 install ok installed libdrm2:amd64 libdrm2 2.4.97-1 install ok installed libdtd-parser-java libdtd-parser-java 1.2~svn20110404-1 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-1 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libegl-mesa0:amd64 libegl-mesa0 18.3.6-2+deb10u1 install ok installed libegl1:amd64 libegl1 1.1.0-1 install ok installed libegl1-mesa:amd64 libegl1-mesa 18.3.6-2+deb10u1 install ok installed libeigen3-dev libeigen3-dev 3.3.7-1 install ok installed libel-api-java libel-api-java 3.0.0-2+deb10u1 install ok installed libelf1:amd64 libelf1 0.176-1.1 install ok installed libelk0 libelk0 3.99.8-4.2+b1 install ok installed libemail-date-format-perl libemail-date-format-perl 1.005-1 install ok installed libencode-locale-perl libencode-locale-perl 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ok installed libfindbin-libs-perl libfindbin-libs-perl 2.190.02-1 install ok installed libflac8:amd64 libflac8 1.3.2-3+deb10u2 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfont-ttf-perl libfont-ttf-perl 1.06-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.3-1+b2 install ok installed libfreecontact0v5:amd64 libfreecontact0v5 1.0.21-7+b1 install ok installed libfreemarker-java libfreemarker-java 2.3.23-9 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfreexl1:amd64 libfreexl1 1.0.5-3 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libfuse2:amd64 libfuse2 2.9.9-1+deb10u1 install ok installed libfyba0:amd64 libfyba0 4.1.1-6 install ok installed libg20 libg20 0.72-8+b1 install ok installed libgail-common:amd64 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libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.38.1+dfsg-1 install ok installed libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-bin 2.38.1+dfsg-1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.38.1+dfsg-1 install ok installed libgeos-3.7.1:amd64 libgeos-3.7.1 3.7.1-1 install ok installed libgeos-c1v5:amd64 libgeos-c1v5 3.7.1-1 install ok installed libgeotiff2:amd64 libgeotiff2 1.4.3-1 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.0-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-4 install ok installed libgetopt-euclid-perl libgetopt-euclid-perl 0.4.5-2 install ok installed libgetopt-simple-perl libgetopt-simple-perl 1.52-5 install ok installed libgflags2.2 libgflags2.2 2.2.2-1 install ok installed libgflags2v5 libgflags2v5 2.1.2-4 install ok installed libgfortran-6-dev:amd64 libgfortran-6-dev 6.3.0-18+deb9u1 install ok installed libgfortran-8-dev:amd64 libgfortran-8-dev 8.3.0-6 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgif7:amd64 libgif7 5.1.4-3 install ok installed libgkl-java libgkl-java 0.8.5+dfsg-2 install ok installed libgkl-jni libgkl-jni 0.8.5+dfsg-2 install ok installed libgl1:amd64 libgl1 1.1.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 18.3.6-2+deb10u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 18.3.6-2+deb10u1 install ok installed libglade2-0:amd64 libglade2-0 1:2.6.4-2+b1 install ok installed libglapi-mesa:amd64 libglapi-mesa 18.3.6-2+deb10u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libglib2.0-data libglib2.0-data 2.58.3-2+deb10u3 install ok installed libglpk-java:amd64 libglpk-java 1.12.0-1 install ok installed libglpk40:amd64 libglpk40 4.65-2 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.0-2.1+b3 install ok installed libglvnd0:amd64 libglvnd0 1.1.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 18.3.6-2+deb10u1 install ok installed libglx0:amd64 libglx0 1.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls-dane0:amd64 libgnutls-dane0 3.6.7-4+deb10u8 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgoogle-glog0v5 libgoogle-glog0v5 0.3.5-1 install ok installed libgoogle-gson-java libgoogle-gson-java 2.8.5-3 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libgraph-perl libgraph-perl 1:0.9704-1 install ok installed libgraphics-colornames-perl libgraphics-colornames-perl 2.11-7.1 install ok installed libgraphics-colorobject-perl libgraphics-colorobject-perl 0.5.0-7.1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgromacs2 libgromacs2 2016.1-2 install ok installed libgromacs4:amd64 libgromacs4 2019.1-1 install ok installed libgs9:amd64 libgs9 9.27~dfsg-2+deb10u5 install ok installed libgs9-common libgs9-common 9.27~dfsg-2+deb10u5 install ok installed libgsasl7 libgsasl7 1.8.0-8+deb10u1 install ok installed libgsl23:amd64 libgsl23 2.5+dfsg-6 install ok installed libgslcblas0:amd64 libgslcblas0 2.5+dfsg-6 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libgtextutils0v5:amd64 libgtextutils0v5 0.7-6 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.24.5-1 install ok installed libgtk-3-bin libgtk-3-bin 3.24.5-1 install ok installed libgtk-3-common libgtk-3-common 3.24.5-1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.32-3 install ok installed libgtk2.0-bin libgtk2.0-bin 2.24.32-3 install ok installed libgtk2.0-common libgtk2.0-common 2.24.32-3 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4 install ok installed libguava-java libguava-java 19.0-1 install ok installed libguice-java libguice-java 4.2.1-1 install ok installed libgvc6 libgvc6 2.40.1-6+deb10u1 install ok installed libgvpr2 libgvpr2 2.40.1-6+deb10u1 install ok installed libhamcrest-java libhamcrest-java 1.3-9 install ok installed libharfbuzz-icu0:amd64 libharfbuzz-icu0 2.3.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhawtjni-runtime-java libhawtjni-runtime-java 1.16-1 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.13-4 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libheif1:amd64 libheif1 1.3.2-2~deb10u1 install ok installed libhmsbeagle1v5 libhmsbeagle1v5 3.1.2+dfsg-6 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1+b1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1 install ok installed libhsqldb-java libhsqldb-java 2.4.1-2 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libhts2:amd64 libhts2 1.9-12~deb10u1 install ok installed libhtsjdk-java libhtsjdk-java 2.18.2+dfsg-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.04-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-3 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhttpclient-java libhttpclient-java 4.5.7-1+deb10u1 install ok installed libhttpcore-java libhttpcore-java 4.4.11-1 install ok installed libhwloc-dev:amd64 libhwloc-dev 1.11.12-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs-dev:amd64 libibverbs-dev 22.1-1 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu-dev:amd64 libicu-dev 63.1-6+deb10u3 install ok installed libicu4j-java libicu4j-java 62.1-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-14 install ok installed libilmbase12:amd64 libilmbase12 2.2.0-12 install ok installed libilmbase23:amd64 libilmbase23 2.2.1-2 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libintellij-annotations-java libintellij-annotations-java 17.0.0-1 install ok installed libio-all-perl libio-all-perl 0.87-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b5 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.060-3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libip4tc0:amd64 libip4tc0 1.8.2-4 install ok installed libipc-run-perl libipc-run-perl 20180523.0-1 install ok installed libipc-shareable-perl libipc-shareable-perl 0.61-2 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4+b3 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.25-4 install ok installed libisl15:amd64 libisl15 0.18-1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libisorelax-java libisorelax-java 20041111-12 install ok installed libistack-commons-java libistack-commons-java 3.0.6-3 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjansi-java libjansi-java 1.17.1-1 install ok installed libjansi-native-java libjansi-native-java 1.8-1 install ok installed libjansson4:amd64 libjansson4 2.12-1 install ok installed libjava-xmlbuilder-java libjava-xmlbuilder-java 0.4-2 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-8 install ok installed libjaxen-java libjaxen-java 1.1.6-4 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.16-1+deb10u1 install ok installed libjbzip2-java libjbzip2-java 0.9.1-5 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjcommon-java libjcommon-java 1.0.23-1 install ok installed libjdom1-java libjdom1-java 1.1.3-2 install ok installed libjellyfish-2.0-2:amd64 libjellyfish-2.0-2 2.2.10-2 install ok installed libjemalloc1 libjemalloc1 3.6.0-9.1 install ok installed libjetbrains-annotations-java libjetbrains-annotations-java 17.0.0-1 install ok installed libjets3t-java libjets3t-java 0.8.1+dfsg-4 install ok installed libjgoodies-common-java libjgoodies-common-java 1.8.1-2 install ok installed libjgoodies-forms-java libjgoodies-forms-java 1.9.0-3 install ok installed libjoptsimple-java libjoptsimple-java 5.0.4-3 install ok installed libjpeg-dev libjpeg-dev 1:1.5.2-2+deb10u1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:1.5.2-2+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-d3 libjs-d3 3.5.17-2 install ok installed libjs-es5-shim libjs-es5-shim 4.5.12-1 install ok installed libjs-highlight.js libjs-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.19+dfsg-1 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5 install ok installed libjs-json libjs-json 0~20180723-2 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-3 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.5.3+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.8.4-1 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1+deb10u1 install ok installed libjsch-java libjsch-java 0.1.55-1 install ok installed libjson-c3:amd64 libjson-c3 0.12.1+ds-2+deb10u1 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.4.4-2 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.4.4-2 install ok installed libjsoncpp1:amd64 libjsoncpp1 1.7.4-3 install ok installed libjsoup-java libjsoup-java 1.10.2-2 install ok installed libjsp-api-java libjsp-api-java 2.3.4-2+deb10u1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libjxr-tools libjxr-tools 1.1-6+b1 install ok installed libjxr0:amd64 libjxr0 1.1-6+b1 install ok installed libjzlib-java libjzlib-java 1.1.3-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkdf5-2 libkdf5-2 2.9.3+dfsg-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkmlbase1:amd64 libkmlbase1 1.3.0-7 install ok installed libkmlconvenience1:amd64 libkmlconvenience1 1.3.0-7 install ok installed libkmldom1:amd64 libkmldom1 1.3.0-7 install ok installed libkmlengine1:amd64 libkmlengine1 1.3.0-7 install ok installed libkmlregionator1:amd64 libkmlregionator1 1.3.0-7 install ok installed libkmlxsd1:amd64 libkmlxsd1 1.3.0-7 install ok installed libkmod2:amd64 libkmod2 26-1 install ok installed libkpathsea6:amd64 libkpathsea6 2018.20181218.49446-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed libkyotocabinet16v5:amd64 libkyotocabinet16v5 1.2.76-4.2+b1 install ok installed liblab-gamut1 liblab-gamut1 2.40.1-6+deb10u1 install ok installed liblapack-dev:amd64 liblapack-dev 3.8.0-2 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblightcouch-java liblightcouch-java 0.0.6-1 install ok installed liblist-allutils-perl liblist-allutils-perl 0.15-1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b4 install ok installed liblist-someutils-perl liblist-someutils-perl 0.56-1 install ok installed liblist-utilsby-perl liblist-utilsby-perl 0.11-1 install ok installed libllvm7:amd64 libllvm7 1:7.0.1-8+deb10u2 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b4 install ok installed liblog-dispatch-perl liblog-dispatch-perl 2.68-1 install ok installed liblog-log4perl-perl liblog-log4perl-perl 1.49-1 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-8+deb10u2 install ok installed liblog4j2-java liblog4j2-java 2.17.1-1~deb10u1 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2.1 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-9 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-8.1+b2 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma-dev:amd64 liblzma-dev 5.2.4-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-0.1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmagickcore-6.q16-3:amd64 libmagickcore-6.q16-3 8:6.9.7.4+dfsg-11+deb9u8 install ok installed libmagickcore-6.q16-3-extra:amd64 libmagickcore-6.q16-3-extra 8:6.9.7.4+dfsg-11+deb9u8 install ok installed libmagickcore-6.q16-6:amd64 libmagickcore-6.q16-6 8:6.9.10.23+dfsg-2.1+deb10u1 install ok installed libmagickcore-6.q16-6-extra:amd64 libmagickcore-6.q16-6-extra 8:6.9.10.23+dfsg-2.1+deb10u1 install ok installed libmagickwand-6.q16-3:amd64 libmagickwand-6.q16-3 8:6.9.7.4+dfsg-11+deb9u8 install ok installed libmagickwand-6.q16-6:amd64 libmagickwand-6.q16-6 8:6.9.10.23+dfsg-2.1+deb10u1 install ok installed libmail-java libmail-java 1.6.2-1 install ok installed libmail-sendmail-perl libmail-sendmail-perl 0.80-1 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmailutils5:amd64 libmailutils5 1:3.5-4 install ok installed libmariadb3:amd64 libmariadb3 1:10.3.34-0+deb10u1 install ok installed libmath-bezier-perl libmath-bezier-perl 0.01-2 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-1 install ok installed libmath-random-mt-perl libmath-random-mt-perl 1.17-1+b5 install ok installed libmath-round-perl libmath-round-perl 0.07-1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-2 install ok installed libmath-tamuanova-perl libmath-tamuanova-perl 1.0.2-2+b7 install ok installed libmath-vec-perl libmath-vec-perl 1.01-3 install ok installed libmath-vecstat-perl libmath-vecstat-perl 0.08-2 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-1 install ok installed libmaven-parent-java libmaven-parent-java 31-2 install ok installed libmaven-resolver-java libmaven-resolver-java 1.3.1-1 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-3 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.3.0-1 install ok installed libmaven3-core-java libmaven3-core-java 3.6.0-1 install ok installed libmbedcrypto0:amd64 libmbedcrypto0 2.4.2-1+deb9u3 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls-dev:amd64 libmbedtls-dev 2.16.0-1 install ok installed libmbedtls10:amd64 libmbedtls10 2.4.2-1+deb9u3 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmime-charset-perl libmime-charset-perl 1.012.2-1 install ok installed libmime-lite-perl libmime-lite-perl 3.030-2 install ok installed libmime-tools-perl libmime-tools-perl 5.509-1 install ok installed libmime-types-perl libmime-types-perl 2.17-1 install ok installed libminizip1:amd64 libminizip1 1.1-8+b1 install ok installed libmldbm-perl libmldbm-perl 2.05-2 install ok installed libmng1:amd64 libmng1 1.0.10+dfsg-3.1+b5 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-1 install ok installed libmongodb-java libmongodb-java 3.6.3-2 install ok installed libmoo-perl libmoo-perl 2.003004-2 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libmro-compat-perl libmro-compat-perl 0.13-1 install ok installed libmsv-java libmsv-java 2009.1+dfsg1-6 install ok installed libmysql-java libmysql-java 5.1.49-0+deb9u1 install ok installed libnamespace-autoclean-perl libnamespace-autoclean-perl 0.28-1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-1 install ok installed libncbi-vdb2 libncbi-vdb2 2.9.3+dfsg-2 install ok installed libncbi-wvdb2 libncbi-wvdb2 2.9.3+dfsg-2 install ok installed libncbi6:amd64 libncbi6 6.1.20170106+dfsg1-0+deb10u2 install ok installed libncurses-dev:amd64 libncurses-dev 6.1+20181013-2+deb10u2 install ok installed libncurses5:amd64 libncurses5 6.1+20181013-2+deb10u2 install ok installed libncurses5-dev:amd64 libncurses5-dev 6.1+20181013-2+deb10u2 install ok installed libncurses6:amd64 libncurses6 6.1+20181013-2+deb10u2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.1.0-5+b1 install ok installed libnet-http-perl libnet-http-perl 6.18-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.85-2+deb10u1 install ok installed libnetcdf13:amd64 libnetcdf13 1:4.6.2-1 install ok installed libnetpbm10 libnetpbm10 2:10.0-15.3+b2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libngs-java libngs-java 2.9.3-1 install ok installed libngs-sdk-dev libngs-sdk-dev 2.9.3-1 install ok installed libngs-sdk1 libngs-sdk1 1.3.0-2 install ok installed libngs-sdk2 libngs-sdk2 2.9.3-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1 install ok installed libnl-3-dev:amd64 libnl-3-dev 3.4.0-1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1 install ok installed libnl-route-3-dev:amd64 libnl-route-3-dev 3.4.0-1 install ok installed libnode64:amd64 libnode64 10.24.0~dfsg-1~deb10u1 install ok installed libnotify4:amd64 libnotify4 0.7.7-4 install ok installed libnpth0:amd64 libnpth0 1.6-1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss-systemd:amd64 libnss-systemd 241-7~deb10u8 install ok installed libnss3:amd64 libnss3 2:3.42.1-1+deb10u5 install ok installed libntlm0:amd64 libntlm0 1.5-1+deb10u1 install ok installed libnuma-dev:amd64 libnuma-dev 2.0.12-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libnumber-format-perl libnumber-format-perl 1.75-1 install ok installed libodbc1:amd64 libodbc1 2.3.6-0.1 install ok installed libogdi3.2 libogdi3.2 3.2.1+ds-4 install ok installed libogg0:amd64 libogg0 1.3.2-1+b1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-2+deb10u1 install ok installed libopenexr22:amd64 libopenexr22 2.2.0-11+b1 install ok installed libopenexr23:amd64 libopenexr23 2.2.1-4.1+deb10u1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.3.0-2+deb10u2 install ok installed libopenmpi-dev:amd64 libopenmpi-dev 3.1.3-11 install ok installed libopenmpi2:amd64 libopenmpi2 2.0.2-2 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-11 install ok installed liboro-java liboro-java 2.0.8a-13 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b7 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b7 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.38-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.29-1 install ok installed libpadwalker-perl libpadwalker-perl 2.3-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam-systemd:amd64 libpam-systemd 241-7~deb10u8 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libparams-classify-perl libparams-classify-perl 0.015-1+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-3+b4 install ok installed libparams-validate-perl libparams-validate-perl 1.29-1+b1 install ok installed libparams-validationcompiler-perl libparams-validationcompiler-perl 0.30-1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-2 install ok installed libpathplan4 libpathplan4 2.40.1-6+deb10u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre16-3:amd64 libpcre16-3 2:8.39-12 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.39-12 install ok installed libpcre32-3:amd64 libpcre32-3 2:8.39-12 install ok installed libpcrecpp0v5:amd64 libpcrecpp0v5 2:8.39-12 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.24-1 install ok installed libperl4-corelibs-perl libperl4-corelibs-perl 0.004-1+deb10u1 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libperlio-gzip-perl libperlio-gzip-perl 0.19-1+b5 install ok installed libpicard-java libpicard-java 2.18.25+dfsg-2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libplexus-archiver-java libplexus-archiver-java 3.6.0-2 install ok installed libplexus-cipher-java libplexus-cipher-java 1.7-3 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.6.0-1 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 1.7.1-7 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.25-1 install ok installed libplexus-io-java libplexus-io-java 3.1.1-1 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 1.4-4 install ok installed libplexus-utils2-java libplexus-utils2-java 3.1.1-1 install ok installed libpmix2:amd64 libpmix2 3.1.2-3 install ok installed libpng-dev:amd64 libpng-dev 1.6.36-6 install ok installed libpng-tools libpng-tools 1.6.36-6 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpod-coverage-perl libpod-coverage-perl 0.23-1 install ok installed libpoppler64:amd64 libpoppler64 0.48.0-2+deb9u2 install ok installed libpoppler82:amd64 libpoppler82 0.71.0-5 install ok installed libpopt0:amd64 libpopt0 1.16-12 install ok installed libpostscript-perl libpostscript-perl 0.06-3 install ok installed libpotrace0:amd64 libpotrace0 1.15-1 install ok installed libpq5:amd64 libpq5 11.16-0+deb10u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libprocps7:amd64 libprocps7 2:3.3.15-2 install ok installed libproj13:amd64 libproj13 5.2.0-1 install ok installed libprotobuf10:amd64 libprotobuf10 3.0.0-9 install ok installed libprotobuf17:amd64 libprotobuf17 3.6.1.3-2 install ok installed libproxy1v5:amd64 libproxy1v5 0.4.15-5+deb10u1 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libptexenc1:amd64 libptexenc1 2018.20181218.49446-1 install ok installed libpth20:amd64 libpth20 2.0.7-20+b2 install ok installed libpulse0:amd64 libpulse0 12.2-4+deb10u1 install ok installed libpvm3:amd64 libpvm3 3.4.6-2 install ok installed libpython-dev:amd64 libpython-dev 2.7.16-1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-dev:amd64 libpython2-dev 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7:amd64 libpython2.7 2.7.16-2+deb10u1 install ok installed libpython2.7-dev:amd64 libpython2.7-dev 2.7.16-2+deb10u1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.5-minimal:amd64 libpython3.5-minimal 3.5.3-1+deb9u1 install ok installed libpython3.5-stdlib:amd64 libpython3.5-stdlib 3.5.3-1+deb9u1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libqhull7:amd64 libqhull7 2015.2-4 install ok installed libqt4-dbus:amd64 libqt4-dbus 4:4.8.7+dfsg-18+deb10u1 install ok installed libqt4-xml:amd64 libqt4-xml 4:4.8.7+dfsg-18+deb10u1 install ok installed libqtcore4:amd64 libqtcore4 4:4.8.7+dfsg-18+deb10u1 install ok installed libqtdbus4:amd64 libqtdbus4 4:4.8.7+dfsg-18+deb10u1 install ok installed libqtgui4:amd64 libqtgui4 4:4.8.7+dfsg-18+deb10u1 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libreadline-dev:amd64 libreadline-dev 7.0-5 install ok installed libreadline5:amd64 libreadline5 5.2+dfsg-3+b13 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libreadonly-perl libreadonly-perl 2.050-1 install ok installed libref-util-perl libref-util-perl 0.204-1 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-1+b1 install ok installed libregexp-common-perl libregexp-common-perl 2017060201-1 install ok installed libregexp-java libregexp-java 1.5-4 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.8.1-1 install ok installed librngom-java librngom-java 2.3.0.1-8 install ok installed librole-tiny-perl librole-tiny-perl 2.000006-1 install ok installed librsvg2-2:amd64 librsvg2-2 2.44.10-2.1+deb10u3 install ok installed librsvg2-common:amd64 librsvg2-common 2.44.10-2.1+deb10u3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u8 install ok installed libruby2.5:amd64 libruby2.5 2.5.5-3+deb10u4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libsaxonhe-java libsaxonhe-java 9.9.0.2+dfsg-1 install ok installed libscalar-list-utils-perl libscalar-list-utils-perl 1:1.50-1+b1 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsensors-config libsensors-config 1:3.5.0-3 deinstall ok config-files libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsensors5:amd64 libsensors5 1:3.5.0-3 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libservlet-api-java libservlet-api-java 4.0.1-2 install ok installed libservlet3.1-java libservlet3.1-java 1:4.0.1-2 install ok installed libset-intspan-perl libset-intspan-perl 1.19-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsisu-guice-java libsisu-guice-java 4.2.0-1 install ok installed libsisu-inject-java libsisu-inject-java 0.3.3-1 install ok installed libsisu-ioc-java libsisu-ioc-java 2.3.0-11 install ok installed libsisu-plexus-java libsisu-plexus-java 0.3.3-3 install ok installed libslf4j-java libslf4j-java 1.7.25-3 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsnappy-java libsnappy-java 1.1.7.2-1 install ok installed libsnappy-jni libsnappy-jni 1.1.7.2-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.7-1 install ok installed libsndfile1:amd64 libsndfile1 1.0.28-6+deb10u1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-1 install ok installed libsombok3:amd64 libsombok3 2.4.0-2 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-2 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.64.2-2 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.64.2-2 install ok installed libspatialite7:amd64 libspatialite7 4.3.0a-5+b2 install ok installed libspecio-perl libspecio-perl 0.43-1 install ok installed libspiffy-perl libspiffy-perl 0.46-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsprng2 libsprng2 2.0a-12 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libsquid1 libsquid1 1.9g+cvs20050121-11 install ok installed libsquizz libsquizz 0.99d+dfsg-2 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstaden-read11:amd64 libstaden-read11 1.14.8-2 install ok installed libstaden-read13:amd64 libstaden-read13 1.14.11-6 install ok installed libstatistics-basic-perl libstatistics-basic-perl 1.6611-1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0702-1 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++-6-dev:amd64 libstdc++-6-dev 6.3.0-18+deb9u1 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1 install ok installed libstrictures-perl libstrictures-perl 2.000005-1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.987-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.14-1+b1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1+b3 install ok installed libsub-quote-perl libsub-quote-perl 2.005001-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1 install ok installed libsuitesparseconfig4:amd64 libsuitesparseconfig4 1:4.5.4-1 install ok installed libsuitesparseconfig5:amd64 libsuitesparseconfig5 1:5.4.0+dfsg-1 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.1+dfsg1-4 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-3 install ok installed libsvg-perl libsvg-perl 2.84-1 install ok installed libsynctex1:amd64 libsynctex1 2016.20160513.41080.dfsg-2+deb9u1 install ok installed libsynctex2:amd64 libsynctex2 2018.20181218.49446-1 install ok installed libsys-hostname-long-perl libsys-hostname-long-perl 1.5-1 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtamuanova-0.2 libtamuanova-0.2 0.2-4+b1 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtbb2:amd64 libtbb2 2018~U6-4 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libteckit0:amd64 libteckit0 2.5.8+ds2-5 install ok installed libterm-readkey-perl libterm-readkey-perl 2.38-1 install ok installed libtest-deep-perl libtest-deep-perl 1.128-1 install ok installed libtest-differences-perl libtest-differences-perl 0.65-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.35-1 install ok installed libtest-pod-perl libtest-pod-perl 1.52-1 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtexlua52:amd64 libtexlua52 2018.20181218.49446-1 install ok installed libtexlua53:amd64 libtexlua53 2018.20181218.49446-1 install ok installed libtexluajit2:amd64 libtexluajit2 2018.20181218.49446-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtext-format-perl libtext-format-perl 0.61-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b7 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb10u1 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.1+20181013-2+deb10u2 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libtool libtool 2.4.6-9 install ok installed libtre5:amd64 libtre5 0.8.0-6 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.31-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libtxc-dxtn-s2tc:amd64 libtxc-dxtn-s2tc 1.0+git20151227-2 install ok installed libtxw2-java libtxw2-java 2.3.0.1-8 install ok installed libtype-tiny-perl libtype-tiny-perl 1.004004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.014-1+b1 install ok installed libubsan0:amd64 libubsan0 7.4.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunbound8:amd64 libunbound8 1.9.0-2+deb10u2 install ok installed libunicode-linebreak-perl libunicode-linebreak-perl 0.0.20190101-1 install ok installed libunicode-map-perl libunicode-map-perl 0.112-12+b1 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libunwind8:amd64 libunwind8 1.2.1-10~deb10u1 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.1-1+deb10u1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libutempter0:amd64 libutempter0 1.1.6-3 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libuv1:amd64 libuv1 1.24.1-1+deb10u1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.62-1+b1 install ok installed libvorbis0a:amd64 libvorbis0a 1.3.6-2 install ok installed libvorbisenc2:amd64 libvorbisenc2 1.3.6-2 install ok installed libwagon-http-java libwagon-http-java 3.3.1-2 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.3.1-2 install ok installed libwayland-client0:amd64 libwayland-client0 1.16.0-1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.16.0-1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.16.0-1 install ok installed libwayland-egl1-mesa:amd64 libwayland-egl1-mesa 18.3.6-2+deb10u1 install ok installed libwayland-server0:amd64 libwayland-server0 1.16.0-1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u1 install ok installed libwebpmux2:amd64 libwebpmux2 0.5.2-1 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u1 install ok installed libwebsocket-api-java libwebsocket-api-java 1.1-1+deb10u1 install ok installed libwmf0.2-7:amd64 libwmf0.2-7 0.2.8.4-14 install ok installed libwoff1:amd64 libwoff1 1.0.2-1 install ok installed libwrap0:amd64 libwrap0 7.6.q-28 install ok installed libwsdl4j-java libwsdl4j-java 1.6.3-4 install ok installed libwww-perl libwww-perl 6.36-2 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libwxbase3.0-0v5:amd64 libwxbase3.0-0v5 3.0.4+dfsg-8 install ok installed libwxgtk3.0-0v5:amd64 libwxgtk3.0-0v5 3.0.4+dfsg-8 install ok installed libwxgtk3.0-gtk3-0v5:amd64 libwxgtk3.0-gtk3-0v5 3.0.4+dfsg-8 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-7 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.7-1+deb10u2 install ok installed libx265-165:amd64 libx265-165 2.9-4 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.13.1-2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.13.1-2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.13.1-2 install ok installed libxcb-present0:amd64 libxcb-present0 1.13.1-2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.13.1-2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.15-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-3+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.40.1-6+deb10u1 install ok installed libxerces-c3.1:amd64 libxerces-c3.1 3.1.4+debian-2+deb9u1 install ok installed libxerces-c3.2:amd64 libxerces-c3.2 3.2.2+debian-1+deb10u1 install ok installed libxerces2-java libxerces2-java 2.12.0-1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-2 install ok installed libxkbcommon0:amd64 libxkbcommon0 0.8.2-1 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-3 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-9 install ok installed libxml-dom-perl libxml-dom-perl 1.44-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-3 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-6 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.96-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-4 install ok installed libxml-perl libxml-perl 0.08-3 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-1 install ok installed libxml-sax-perl libxml-sax-perl 1.00+dfsg-1 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1.1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.44-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-2 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxom-java libxom-java 1.2.10-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxpp2-java libxpp2-java 2.1.10-8 install ok installed libxpp3-java libxpp3-java 1.1.4c-3 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.32-2.2~deb10u1 install ok installed libxsom-java libxsom-java 2.3.0.1-8 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.6.5-2 install ok installed libxz-java libxz-java 1.8-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.76+repack-1 install ok installed libyaml-perl libyaml-perl 1.27-1 install ok installed libyaml-tiny-perl libyaml-tiny-perl 1.73-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed libzzip-0-13:amd64 libzzip-0-13 0.13.62-3.2+deb10u1 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed littler littler 0.3.6-1 install ok installed lmodern lmodern 2.004.5-6 install ok installed login login 1:4.5-1.1 install ok installed loki loki 2.4.7.4-8 install ok installed lsb-base lsb-base 10.2019051400 install ok installed lua-filesystem:amd64 lua-filesystem 1.6.3-1 install ok installed lua-lpeg:amd64 lua-lpeg 1.0.0-2 install ok installed lua-md5:amd64 lua-md5 1.2+git+1+8d87fee-1.1 install ok installed lynx lynx 2.8.9rel.1-3+deb10u1 install ok installed lynx-common lynx-common 2.8.9rel.1-3+deb10u1 install ok installed m4 m4 1.4.18-2 install ok installed macs macs 2.1.2.1-1 install ok installed mafft mafft 7.407-2 install ok installed mailutils mailutils 1:3.5-4 install ok installed mailutils-common mailutils-common 1:3.5-4 install ok installed make make 4.2.1-1.2 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mapsembler2 mapsembler2 2.2.4+dfsg-3+b1 install ok installed maq maq 0.7.1-8 deinstall ok config-files mariadb-client-10.1 mariadb-client-10.1 10.1.45-0+deb9u1 install ok installed mariadb-client-10.3 mariadb-client-10.3 1:10.3.34-0+deb10u1 install ok installed mariadb-client-core-10.3 mariadb-client-core-10.3 1:10.3.34-0+deb10u1 install ok installed mariadb-common mariadb-common 1:10.3.34-0+deb10u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed med-cloud med-cloud 3.3 install ok installed med-config med-config 3.3 install ok installed med-tasks med-tasks 3.3 install ok installed melting melting 5.2.0-1 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.62 install ok installed minia minia 1.6906-2 install ok installed mipe mipe 1.1-7 install ok installed mira-assembler mira-assembler 4.9.6-4+b1 install ok installed mira-rfam-12s-rrna mira-rfam-12s-rrna 4.9.6-4 install ok installed mlv-smile mlv-smile 1.47-6 install ok installed mothur mothur 1.41.21-1 install ok installed mount mount 2.33.1-0.1 install ok installed mpi-default-bin mpi-default-bin 1.13 install ok installed mrbayes mrbayes 3.2.6+dfsg-2+b1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed mummer mummer 3.23+dfsg-4 install ok installed muscle muscle 1:3.8.1551-2 install ok installed mustang mustang 3.2.3-3 install ok installed mysql-common mysql-common 5.8+1.0.5 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncbi-epcr ncbi-epcr 2.3.12-1-7 install ok installed ncbi-tools-bin ncbi-tools-bin 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncoils ncoils 2002-7 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed neobio neobio 0.0.20030929-4 install ok installed netbase netbase 5.6 install ok installed netpbm netpbm 2:10.0-15.3+b2 install ok installed node-highlight.js node-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed node-normalize.css node-normalize.css 8.0.1-3 install ok installed nodejs nodejs 10.24.0~dfsg-1~deb10u1 install ok installed nodejs-doc nodejs-doc 10.24.0~dfsg-1~deb10u1 install ok installed notification-daemon notification-daemon 3.20.0-4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed odbcinst odbcinst 2.3.6-0.1 install ok installed odbcinst1debian2:amd64 odbcinst1debian2 2.3.6-0.1 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.16+8-1~deb10u1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.16+8-1~deb10u1 install ok installed openjdk-8-jre:amd64 openjdk-8-jre 8u252-b09-1~deb9u1 install ok installed openjdk-8-jre-headless:amd64 openjdk-8-jre-headless 8u252-b09-1~deb9u1 install ok installed openmpi-bin openmpi-bin 3.1.3-11 install ok installed openmpi-common openmpi-common 3.1.3-11 install ok installed openssh-client openssh-client 1:7.9p1-10+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed pandoc pandoc 2.2.1-3+b2 install ok installed pandoc-data pandoc-data 2.2.1-3 install ok installed paraclu paraclu 9-2 install ok installed parallel parallel 20161222-1.1 install ok installed parsinsert parsinsert 1.04-4 install ok installed passwd passwd 1:4.5-1.1 install ok installed patch patch 2.7.6-3+deb10u1 install ok installed pdb2pqr pdb2pqr 2.1.1+dfsg-5 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-doc perl-doc 5.28.1-6+deb10u1 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed perl-tk perl-tk 1:804.033-2+b3 install ok installed perm perm 0.4.0-4 install ok installed phylip phylip 1:3.697+dfsg-1 install ok installed phyml phyml 3:3.3.20180621-2 install ok installed phyutility phyutility 2.7.3+dfsg-2 install ok installed picard-tools picard-tools 2.18.25+dfsg-2 install ok installed pinentry-curses pinentry-curses 1.1.0-2 install ok installed pkg-config pkg-config 0.29-6 install ok installed plink plink 1.07+dfsg-2 install ok installed poa poa 2.0+20060928-7 install ok installed poppler-data poppler-data 0.4.9-2 install ok installed prank prank 0.0.170427+dfsg-2 install ok installed preview-latex-style preview-latex-style 11.91-2 install ok installed prime-phylo prime-phylo 1.0.11-7+b1 install ok installed primer3 primer3 2.4.0-2 install ok installed probabel probabel 0.5.0+dfsg-3 install ok installed probalign probalign 1.4-8 install ok installed probcons probcons 1.12-12 install ok installed procps procps 2:3.3.15-2 install ok installed proda proda 1.0-12 install ok installed prodigal prodigal 1:2.6.3-4 install ok installed proj-bin proj-bin 5.2.0-1 install ok installed proj-data proj-data 5.2.0-1 install ok installed prosper prosper 2018.20190227-2 install ok installed ps2eps ps2eps 1.68+binaryfree-2 install ok installed psmisc psmisc 23.2-1+deb10u1 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb10u1 install ok installed pvm pvm 3.4.6-2 install ok installed pynast pynast 1.2.2-4 install ok installed python python 2.7.16-1 install ok installed python-backports-shutil-get-terminal-size python-backports-shutil-get-terminal-size 1.0.0-5 install ok installed python-backports.functools-lru-cache python-backports.functools-lru-cache 1.5-3 install ok installed python-biopython python-biopython 1.73+dfsg-1 install ok installed python-biopython-doc python-biopython-doc 1.73+dfsg-1 install ok installed python-cairo:amd64 python-cairo 1.16.2-1+b1 install ok installed python-chardet python-chardet 3.0.4-3 install ok installed python-cogent python-cogent 1.9-14 install ok installed python-configparser python-configparser 3.5.0b2-1 install ok installed python-cycler python-cycler 0.10.0-1 install ok installed python-dateutil python-dateutil 2.7.3-3 install ok installed python-decorator python-decorator 4.3.0-1.1 install ok installed python-dev python-dev 2.7.16-1 install ok installed python-enum34 python-enum34 1.1.6-2 install ok installed python-functools32 python-functools32 3.2.3.2-3 install ok installed python-future python-future 0.16.0-1 install ok installed python-gdal python-gdal 2.4.0+dfsg-1+b1 install ok installed python-glade2 python-glade2 2.24.0-5.1+b1 install ok installed python-gmpy:amd64 python-gmpy 1.17-4 install ok installed python-gobject-2 python-gobject-2 2.28.6-13+b1 install ok installed python-gtk2 python-gtk2 2.24.0-5.1+b1 install ok installed python-htseq python-htseq 0.11.2-1 install ok installed python-imaging python-imaging 4.0.0-4+deb9u1 install ok installed python-ipython python-ipython 5.8.0-1+deb10u1 install ok installed python-ipython-genutils python-ipython-genutils 0.2.0-1 install ok installed python-kiwisolver python-kiwisolver 1.0.1-2+b1 install ok installed python-matplotlib python-matplotlib 2.2.3-6 install ok installed python-matplotlib-data python-matplotlib-data 3.0.2-2 install ok installed python-matplotlib2-data python-matplotlib2-data 2.2.3-6 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python-mpi4py python-mpi4py 2.0.0-3+b3 install ok installed python-mpmath python-mpmath 1.1.0-1 install ok installed python-networkx python-networkx 2.2-1 install ok installed python-numpy python-numpy 1:1.16.2-1 install ok installed python-olefile python-olefile 0.46-1 install ok installed python-pathlib2 python-pathlib2 2.3.3-1 install ok installed python-pexpect python-pexpect 4.6.0-1 install ok installed python-pickleshare python-pickleshare 0.7.5-1 install ok installed python-pil:amd64 python-pil 5.4.1-2+deb10u3 install ok installed python-pkg-resources python-pkg-resources 40.8.0-1 install ok installed python-prompt-toolkit python-prompt-toolkit 1.0.15-1 install ok installed python-ptyprocess python-ptyprocess 0.6.0-1 install ok installed python-pyglet python-pyglet 1.3.0-1 install ok installed python-pygments python-pygments 2.3.1+dfsg-1+deb10u2 install ok installed python-pygraphviz python-pygraphviz 1.5-1 install ok installed python-pyparsing python-pyparsing 2.2.0+dfsg1-2 install ok installed python-pysam python-pysam 0.15.2+ds-2 install ok installed python-renderpm:amd64 python-renderpm 3.5.13-1+deb10u1 install ok installed python-reportlab python-reportlab 3.5.13-1+deb10u1 install ok installed python-reportlab-accel:amd64 python-reportlab-accel 3.5.13-1+deb10u1 install ok installed python-scandir python-scandir 1.9.0-2 install ok installed python-scipy python-scipy 1.1.0-7 install ok installed python-simplegeneric python-simplegeneric 0.8.1-2 install ok installed python-six python-six 1.12.0-1 install ok installed python-subprocess32 python-subprocess32 3.5.3-1 install ok installed python-sympy python-sympy 1.3-2 install ok installed python-sympy-doc python-sympy-doc 1.3-2 install ok installed python-tk python-tk 2.7.16-2 install ok installed python-traitlets python-traitlets 4.3.2-1 install ok installed python-tz python-tz 2019.1-1 install ok installed python-wcwidth python-wcwidth 0.1.7+dfsg1-3 install ok installed python-wxgtk3.0 python-wxgtk3.0 3.0.2.0+dfsg-8 install ok installed python-wxversion python-wxversion 3.0.2.0+dfsg-8 install ok installed python-yaml python-yaml 3.13-2 install ok installed python2 python2 2.7.16-1 install ok installed python2-dev python2-dev 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-dev python2.7-dev 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-biomaj3-cli python3-biomaj3-cli 3.1.10-1 install ok installed python3-biomaj3-core python3-biomaj3-core 3.0.15-1 install ok installed python3-biopython python3-biopython 1.73+dfsg-1 install ok installed python3-bs4 python3-bs4 4.7.1-1 install ok installed python3-cachecontrol python3-cachecontrol 0.11.7-1 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-elasticsearch python3-elasticsearch 5.4.0-1 install ok installed python3-future python3-future 0.16.0-1 install ok installed python3-gdal python3-gdal 2.4.0+dfsg-1+b1 install ok installed python3-html5lib python3-html5lib 1.0.1-1 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-isodate python3-isodate 0.6.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2 install ok installed python3-lxml:amd64 python3-lxml 4.3.2-1+deb10u4 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-mistune python3-mistune 0.8.4-1 install ok installed python3-mypy python3-mypy 0.670-2 install ok installed python3-mypy-extensions python3-mypy-extensions 0.4.1-1 install ok installed python3-networkx python3-networkx 2.2-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-olefile python3-olefile 0.46-1 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-prov python3-prov 1.5.2-1 install ok installed python3-psutil python3-psutil 5.5.1-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-rdflib python3-rdflib 4.2.2-2 install ok installed python3-rdflib-jsonld python3-rdflib-jsonld 0.4.0-4 install ok installed python3-renderpm:amd64 python3-renderpm 3.5.13-1+deb10u1 install ok installed python3-reportlab python3-reportlab 3.5.13-1+deb10u1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.5.13-1+deb10u1 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.15.34-1+b1 install ok installed python3-schema-salad python3-schema-salad 3.0.20181206233650-2 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-shellescape python3-shellescape 3.4.1-3 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-soupsieve python3-soupsieve 1.8+dfsg-1 install ok installed python3-sparqlwrapper python3-sparqlwrapper 1.8.2-0.1 install ok installed python3-typed-ast python3-typed-ast 1.3.1-1 install ok installed python3-typing-extensions python3-typing-extensions 3.7.2-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3.5 python3.5 3.5.3-1+deb9u1 install ok installed python3.5-minimal python3.5-minimal 3.5.3-1+deb9u1 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed qdbus qdbus 4:4.8.7+dfsg-18+deb10u1 install ok installed qt-at-spi:amd64 qt-at-spi 0.4.0-9 install ok installed qtchooser qtchooser 66-2 install ok installed qtcore4-l10n qtcore4-l10n 4:4.8.7+dfsg-18+deb10u1 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed r-base-dev r-base-dev 3.5.2-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.28.0-2 install ok installed r-bioc-hilbertvis r-bioc-hilbertvis 1.40.0-1 install ok installed r-bioc-limma r-bioc-limma 3.38.3+dfsg-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-backports r-cran-backports 1.1.3-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-2 install ok installed r-cran-bindr r-cran-bindr 0.1.1-2 install ok installed r-cran-bindrcpp r-cran-bindrcpp 0.2.2-2 install ok installed r-cran-bit r-cran-bit 1.1-14-1+b1 install ok installed r-cran-bit64 r-cran-bit64 0.9-7-3 install ok installed r-cran-blob r-cran-blob 1.1.1-2 install ok installed r-cran-boot r-cran-boot 1.3-20-2 install ok installed r-cran-class r-cran-class 7.3-15-1 install ok installed r-cran-cli r-cran-cli 1.0.1-1 install ok installed r-cran-cluster r-cran-cluster 2.0.7-1-1+b3 install ok installed r-cran-codetools r-cran-codetools 0.2-16-1 install ok installed r-cran-crayon r-cran-crayon 1.3.4-4 install ok installed r-cran-data.table r-cran-data.table 1.12.0+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.0.0-2 install ok installed r-cran-dbitest r-cran-dbitest 1.5-2-2 install ok installed r-cran-desc r-cran-desc 1.2.0-2 install ok installed r-cran-digest r-cran-digest 0.6.18-1 install ok installed r-cran-dplyr r-cran-dplyr 0.7.8-1 install ok installed r-cran-evaluate r-cran-evaluate 0.13-1 install ok installed r-cran-fansi r-cran-fansi 0.4.0-1 install ok installed r-cran-filehash r-cran-filehash 2.4-1-3 install ok installed r-cran-foreign r-cran-foreign 0.8.71-1 install ok installed r-cran-g.data r-cran-g.data 2.4-3 install ok installed r-cran-glue r-cran-glue 1.3.0-1 install ok installed r-cran-highr r-cran-highr 0.7+dfsg-1 install ok installed r-cran-hms r-cran-hms 0.4.2-2 install ok installed r-cran-htmltools r-cran-htmltools 0.3.6-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.3+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.4.5.1+dfsg-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.6+dfsg-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-15-3+b4 install ok installed r-cran-knitr r-cran-knitr 1.21+dfsg-2 install ok installed r-cran-later r-cran-later 0.7.5+dfsg-2 install ok installed r-cran-lattice r-cran-lattice 0.20-38-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.1-3 install ok installed r-cran-littler r-cran-littler 0.3.6-1 install ok installed r-cran-lubridate r-cran-lubridate 1.7.4-2 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-markdown r-cran-markdown 0.9+dfsg-1 install ok installed r-cran-mass r-cran-mass 7.3-51.1-1 install ok installed r-cran-matrix r-cran-matrix 1.2-15-1 install ok installed r-cran-memoise r-cran-memoise 1.1.0-2 install ok installed r-cran-mgcv r-cran-mgcv 1.8-27-1 install ok installed r-cran-mime r-cran-mime 0.6-1 install ok installed r-cran-mockery r-cran-mockery 0.4.1.1+dfsg-1 install ok installed r-cran-mockr r-cran-mockr 0.1-2 install ok installed r-cran-multicore r-cran-multicore 0.2-1+b2 install ok installed r-cran-nlme r-cran-nlme 3.1.137-1+b3 install ok installed r-cran-nnet r-cran-nnet 7.3-12-2+b2 install ok installed r-cran-permute r-cran-permute 0.9-4-3 install ok installed r-cran-pillar r-cran-pillar 1.3.1-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-png r-cran-png 0.1-7-3 install ok installed r-cran-praise r-cran-praise 1.0.0-3 install ok installed r-cran-prettyunits r-cran-prettyunits 1.0.2-3 install ok installed r-cran-promises r-cran-promises 1.0.1-2 install ok installed r-cran-purrr r-cran-purrr 0.3.0-1 install ok installed r-cran-pvclust r-cran-pvclust 2.0-0-4 install ok installed r-cran-qtl r-cran-qtl 1.44-9-1 install ok installed r-cran-r6 r-cran-r6 2.4.0-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.0-1 install ok installed r-cran-rlang r-cran-rlang 0.3.1-2 install ok installed r-cran-rmarkdown r-cran-rmarkdown 1.11+dfsg-1 install ok installed r-cran-rpart r-cran-rpart 4.1-13-1+b1 install ok installed r-cran-rprojroot r-cran-rprojroot 1.3-2-2 install ok installed r-cran-rsqlite r-cran-rsqlite 2.1.1-2+b1 install ok installed r-cran-runit r-cran-runit 0.4.32-2 install ok installed r-cran-shiny r-cran-shiny 1.2.0+dfsg-1 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-2 install ok installed r-cran-sp r-cran-sp 1:1.3-1-1 install ok installed r-cran-spatial r-cran-spatial 7.3-11-2+b2 install ok installed r-cran-stringi r-cran-stringi 1.2.4-2 install ok installed r-cran-stringr r-cran-stringr 1.4.0-1 install ok installed r-cran-survival r-cran-survival 2.43-3-1 install ok installed r-cran-testit r-cran-testit 0.9-1 install ok installed r-cran-testthat r-cran-testthat 2.0.1-1 install ok installed r-cran-tibble r-cran-tibble 2.0.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 0.2.5-1 install ok installed r-cran-tikzdevice r-cran-tikzdevice 0.12-1 install ok installed r-cran-tinytex r-cran-tinytex 0.10-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-1+b1 install ok installed r-cran-vegan r-cran-vegan 2.5-4+dfsg-3 install ok installed r-cran-withr r-cran-withr 2.1.2-3 install ok installed r-cran-xfun r-cran-xfun 0.4-1 install ok installed r-cran-xml2 r-cran-xml2 1.2.0-3 install ok installed r-cran-xtable r-cran-xtable 1:1.8-3-1 install ok installed r-cran-yaml r-cran-yaml 2.2.0-1 install ok installed r-doc-html r-doc-html 3.5.2-1 install ok installed r-other-mott-happy.hbrem r-other-mott-happy.hbrem 2.4-3 install ok installed r-recommended r-recommended 3.5.2-1 install ok installed rake rake 12.3.1-3+deb10u1 install ok installed raster3d raster3d 3.0-3-5 install ok installed raxml raxml 8.2.12+dfsg-1 install ok installed readline-common readline-common 7.0-5 install ok installed readseq readseq 1-13 install ok installed rename rename 1.10-1 install ok installed rnahybrid rnahybrid 2.1.2-5 install ok installed rtax rtax 0.984-6 install ok installed ruby ruby 1:2.5.1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.2.1-1 install ok installed ruby-minitest ruby-minitest 5.11.3-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.1-1 install ok installed ruby-test-unit ruby-test-unit 3.2.8-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u8 install ok installed ruby2.5 ruby2.5 2.5.5-3+deb10u4 install ok installed rubygems-integration rubygems-integration 1.11+deb10u1 install ok installed samtools samtools 1.9-4 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed seqan-apps seqan-apps 2.4.0+dfsg-11 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.10-1 install ok installed sibsim4 sibsim4 0.20-4 install ok installed sigma-align sigma-align 1.1.3-6 install ok installed sim4 sim4 0.0.20121010-5 install ok installed smalt smalt 0.7.6-8 install ok installed snap snap 2013-11-29-9 install ok installed soapdenovo soapdenovo 1.05-5 install ok installed soapdenovo2 soapdenovo2 241+dfsg-3 install ok installed squizz squizz 0.99d+dfsg-2 install ok installed sra-toolkit sra-toolkit 2.9.3+dfsg-1+b1 install ok installed ssake ssake 4.0-2 install ok installed staden-io-lib-utils staden-io-lib-utils 1.14.11-6 install ok installed sysstat sysstat 12.0.3-2 install ok installed systemd systemd 241-7~deb10u8 install ok installed systemd-sysv systemd-sysv 241-7~deb10u8 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed t-coffee t-coffee 12.00.7fb08c2-4 install ok installed t1utils t1utils 1.41-3 install ok installed tabix tabix 1.9-12~deb10u1 install ok installed tar tar 1.30+dfsg-6 install ok installed tasksel tasksel 3.53 install ok installed tasksel-data tasksel-data 3.53 install ok installed tcl tcl 8.6.9+1 install ok installed tcl8.6 tcl8.6 8.6.9+dfsg-2 install ok installed tcpd tcpd 7.6.q-28 install ok installed tex-common tex-common 6.11 install ok installed tex-gyre tex-gyre 20180621-3 install ok installed texlive-base texlive-base 2018.20190227-2 install ok installed texlive-binaries texlive-binaries 2018.20181218.49446-1 install ok installed texlive-extra-utils texlive-extra-utils 2018.20190227-2 install ok installed texlive-font-utils texlive-font-utils 2018.20190227-2 install ok installed texlive-fonts-extra texlive-fonts-extra 2018.20190227-2 install ok installed texlive-fonts-extra-doc texlive-fonts-extra-doc 2018.20190227-2 install ok installed texlive-fonts-extra-links texlive-fonts-extra-links 2018.20190227-2 install ok installed texlive-fonts-recommended texlive-fonts-recommended 2018.20190227-2 install ok installed texlive-fonts-recommended-doc texlive-fonts-recommended-doc 2018.20190227-2 install ok installed texlive-generic-extra texlive-generic-extra 2018.20190227-2 install ok installed texlive-generic-recommended texlive-generic-recommended 2018.20190227-2 install ok installed texlive-latex-base texlive-latex-base 2018.20190227-2 install ok installed texlive-latex-base-doc texlive-latex-base-doc 2018.20190227-2 install ok installed texlive-latex-extra texlive-latex-extra 2018.20190227-2 install ok installed texlive-latex-extra-doc texlive-latex-extra-doc 2018.20190227-2 install ok installed texlive-latex-recommended texlive-latex-recommended 2018.20190227-2 install ok installed texlive-latex-recommended-doc texlive-latex-recommended-doc 2018.20190227-2 install ok installed texlive-pictures texlive-pictures 2018.20190227-2 install ok installed texlive-pictures-doc texlive-pictures-doc 2018.20190227-2 install ok installed texlive-plain-generic texlive-plain-generic 2018.20190227-2 install ok installed texlive-pstricks texlive-pstricks 2018.20190227-2 install ok installed texlive-pstricks-doc texlive-pstricks-doc 2018.20190227-2 install ok installed theseus theseus 3.3.0-8 install ok installed tigr-glimmer tigr-glimmer 3.02b-2 install ok installed tipa tipa 2:1.3-20 install ok installed tk tk 8.6.9+1 install ok installed tk8.6 tk8.6 8.6.9-2 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4 install ok installed tm-align tm-align 20170708+dfsg-2 install ok installed tophat tophat 2.1.1+dfsg1-2+b1 install ok installed tree-puzzle tree-puzzle 5.2-11 install ok installed tree-puzzle-doc tree-puzzle-doc 5.2-11 install ok installed ttf-adf-accanthis ttf-adf-accanthis 0.20110505-3 install ok installed ttf-adf-gillius ttf-adf-gillius 0.20110505-3 install ok installed ttf-adf-universalis ttf-adf-universalis 0.20110505-3 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed vcftools vcftools 0.1.16-1 install ok installed velvet velvet 1.2.10+dfsg1-5 install ok installed wise wise 2.4.1-21 install ok installed wise-data wise-data 2.4.1-21 install ok installed x11-common x11-common 1:7.7+19 install ok installed x11-utils x11-utils 7.7+4 install ok installed x11-xserver-utils x11-xserver-utils 7.7+8 install ok installed xauth xauth 1:1.0.10-1 install ok installed xbitmaps xbitmaps 1.1.1-2 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xkb-data xkb-data 2.26-2 install ok installed xml-core xml-core 0.18+nmu1 install ok installed xterm xterm 344-1+deb10u2 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zalign zalign 0.9.1-4 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-1+deb10u1 32m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 32m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'remove', 'abyss', 'acedb-other', 'adwaita-icon-theme', 'aevol', 'alien-hunter', 'altree', 'amap-align', 'ampliconnoise', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2-bin', 'aragorn', 'arden', 'at-spi2-core', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autotools-dev', 'bamtools', 'bc', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates-java', 'cain', 'cain-examples', 'cain-solvers', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'concavity', 'conservation-code', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'cython', 'datamash', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-python', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dmsetup', 'dnaclust', 'dpkg-dev', 'dssp', 'dvipng', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fastdnaml', 'fastlink', 'fastqc', 'fasttree', 'fastx-toolkit', 'ffindex', 'file', 'fitgcp', 'flexbar', 'fontconfig', 'fontconfig-config', 'fonts-adf-accanthis', 'fonts-adf-berenis', 'fonts-adf-gillius', 'fonts-adf-universalis', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-glyphicons-halflings', 'fonts-go', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-core', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-noto-ui-core', 'fonts-oflb-asana-math', 'fonts-open-sans', 'fonts-roboto-hinted', 'fonts-roboto-unhinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 'freecontact', 'fsa', 'g++-', 'g++-6', 'g++-8', 'gasic', 'gatb-core', 'gawk', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gdal-data', 'genometools', 'genometools-common', 'gff2aplot', 'gff2ps', 'gfortran', 'gfortran-6', 'gfortran-8', 'ghostscript', 'giira', 'glam2', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'glpk-utils', 'gnome-icon-theme', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'grinder', 'gromacs', 'gromacs-data', 'gsettings-desktop-schemas', 'gsfonts', 'gtk-update-icon-cache', 'guile-2.0-libs:amd64', 'guile-2.2-libs:amd64', 'hhsuite', 'hhsuite-data', 'hicolor-icon-theme', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'icu-devtools', 'idba', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'infernal', 'ipython', 'isympy', 'isympy-common', 'java-common', 'java-wrappers', 'javascript-common', 'jellyfish', 'junit4', 'kalign', 'kissplice', 'krb5-locales', 'laptop-detect', 'last-align', 'libace-perl', 'libactivation-java', 'libaec0:amd64', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libanfo0', 'libann0', 'libaopalliance-java', 'libapache-dbi-perl', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libart-2.0-2:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbambamc0', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbarclay-java', 'libbcprov-java', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libboost-atomic1.67.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-filesystem1.67.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-iostreams1.67.0:amd64', 'libboost-mpi1.62.0', 'libboost-mpi1.67.0', 'libboost-program-options1.62.0:amd64', 'libboost-program-options1.67.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-regex1.67.0:amd64', 'libboost-serialization1.62.0:amd64', 'libboost-serialization1.67.0:amd64', 'libboost-system1.62.0:amd64', 'libboost-system1.67.0:amd64', 'libboost-thread1.62.0:amd64', 'libboost-thread1.67.0:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbytecode-java', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcassie1v5', 'libcc1-0:amd64', 'libcdi-api-java', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcglib-java', 'libcgraph6', 'libcharls2:amd64', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcodemodel-java', 'libcolamd2:amd64', 'libcolord2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-compress-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcroco3:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdevmapper1.02.1:amd64', 'libdigest-perl-md5-perl', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdom4j-java', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libegl1-mesa:amd64', 'libeigen3-dev', 'libel-api-java', 'libelf1:amd64', 'libelk0', 'libemail-date-format-perl', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'liberror-perl', 'libeval-closure-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreecontact0v5:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfuse2:amd64', 'libfyba0:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgatbcore2', 'libgatk-native-bindings-java', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgetopt-euclid-perl', 'libgetopt-simple-perl', 'libgflags2.2', 'libgflags2v5', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgkl-java', 'libgkl-jni', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgoogle-glog0v5', 'libgoogle-gson-java', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgromacs4:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libheif1:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu4j-java', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase23:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libintellij-annotations-java', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libip4tc0:amd64', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libisorelax-java', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjansson4:amd64', 'libjava-xmlbuilder-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjellyfish-2.0-2:amd64', 'libjemalloc1', 'libjetbrains-annotations-java', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjoptsimple-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c3:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsp-api-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblightcouch-java', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog4j1.2-java', 'liblog4j2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-3:amd64', 'libmagickwand-6.q16-6:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-charset-perl', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmng1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmongodb-java', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmysql-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libngs-sdk2', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnotify4:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libodbc1:amd64', 'libogdi3.2', 'libogg0:amd64', 'libole-storage-lite-perl', 'libopenexr22:amd64', 'libopenexr23:amd64', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-gzip-perl', 'libpicard-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpoppler64:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpotrace0:amd64', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libprotobuf10:amd64', 'libprotobuf17:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpth20:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2-dev:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libqt4-dbus:amd64', 'libqt4-xml:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsaxonhe-java', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libservlet-api-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoap-lite-perl', 'libsombok3:amd64', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlite3-0:amd64', 'libsquid1', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstax-ex-java', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstreambuffer-java', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuitesparseconfig5:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsynctex1:amd64', 'libsynctex2:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtxw2-java', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-linebreak-perl', 'libunicode-map-perl', 'libunistring0:amd64', 'libunwind8:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libutempter0:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux2:amd64', 'libwebpmux3:amd64', 'libwebsocket-api-java', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-165:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces-c3.2:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxxhash0:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'loki', 'lsb-base', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'm4', 'macs', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'mapsembler2', 'maq', 'mariadb-client-10.1', 'mariadb-client-10.3', 'mariadb-client-core-10.3', 'mariadb-common', 'med-config', 'med-tasks', 'melting', 'menu', 'mime-support', 'minia', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mrbayes', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-epcr', 'ncbi-tools-bin', 'ncoils', 'neobio', 'netbase', 'netpbm', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'paraclu', 'parallel', 'parsinsert', 'patch', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'perm', 'phylip', 'phyml', 'phyutility', 'picard-tools', 'pinentry-curses', 'pkg-config', 'plink', 'poa', 'poppler-data', 'prank', 'preview-latex-style', 'prime-phylo', 'primer3', 'probabel', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'proj-bin', 'proj-data', 'prosper', 'ps2eps', 'psmisc', 'publicsuffix', 'pvm', 'pynast', 'python', 'python-backports-shutil-get-terminal-size', 'python-backports.functools-lru-cache', 'python-biopython', 'python-biopython-doc', 'python-cairo:amd64', 'python-chardet', 'python-cogent', 'python-configparser', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-dev', 'python-enum34', 'python-functools32', 'python-future', 'python-gdal', 'python-glade2', 'python-gmpy:amd64', 'python-gobject-2', 'python-gtk2', 'python-htseq', 'python-imaging', 'python-ipython', 'python-ipython-genutils', 'python-kiwisolver', 'python-matplotlib', 'python-matplotlib-data', 'python-matplotlib2-data', 'python-minimal', 'python-mpi4py', 'python-mpmath', 'python-networkx', 'python-numpy', 'python-olefile', 'python-pathlib2', 'python-pexpect', 'python-pickleshare', 'python-pil:amd64', 'python-pkg-resources', 'python-prompt-toolkit', 'python-ptyprocess', 'python-pyglet', 'python-pygments', 'python-pygraphviz', 'python-pyparsing', 'python-pysam', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-scandir', 'python-scipy', 'python-simplegeneric', 'python-six', 'python-subprocess32', 'python-sympy', 'python-sympy-doc', 'python-tk', 'python-traitlets', 'python-tz', 'python-wcwidth', 'python-wxgtk3.0', 'python-wxversion', 'python-yaml', 'python2', 'python2-dev', 'python2-minimal', 'python2.7', 'python2.7-dev', 'python2.7-minimal', 'python3', 'python3-biomaj3-cli', 'python3-biomaj3-core', 'python3-biopython', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-elasticsearch', 'python3-future', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'qdbus', 'qt-at-spi:amd64', 'qtchooser', 'qtcore4-l10n', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-hilbertvis', 'r-bioc-limma', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreign', 'r-cran-g.data', 'r-cran-glue', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-permute', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-pvclust', 'r-cran-qtl', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vegan', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'raster3d', 'raxml', 'readline-common', 'readseq', 'rename', 'rnahybrid', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'seqan-apps', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sigma-align', 'sim4', 'smalt', 'snap', 'soapdenovo', 'soapdenovo2', 'squizz', 'sra-toolkit', 'ssake', 'staden-io-lib-utils', 'sysstat', 'systemd', 'systemd-sysv', 't-coffee', 't1utils', 'tabix', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-extra-links', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-plain-generic', 'texlive-pstricks', 'texlive-pstricks-doc', 'theseus', 'tigr-glimmer', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'tm-align', 'tophat', 'tree-puzzle', 'tree-puzzle-doc', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'unzip', 'vcftools', 'velvet', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xterm', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64', 'med-cloud'] 33m44.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libsensors4' is not installed, so not removed Package 'mariadb-client-10.1' is not installed, so not removed The following packages will be REMOVED: abyss acedb-other adwaita-icon-theme aevol alien-hunter altree amap-align ampliconnoise anfo ant ant-contrib ant-optional apache2-bin aragorn arden at-spi2-core autoconf autodock autodock-vina autogrid automake autotools-dev bamtools bc bedtools beignet-opencl-icd binutils binutils-common binutils-x86-64-linux-gnu biomaj bioperl bioperl-run biosquid blast2 blends-common blt bowtie bowtie2 boxshade bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates-java cain cain-examples cain-solvers cassiopee cd-hit cdbfasta cdbs circos circos-tools clearcut clonalframe clustalo clustalw concavity conservation-code cpp cpp-6 cpp-8 cron cwltool cython datamash dbus dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless default-mysql-client dh-python dialign dialign-tx dialign-tx-data dirmngr discosnp disulfinder disulfinder-data dmidecode dmsetup dnaclust dpkg-dev dssp dvipng embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate fakeroot fastdnaml fastlink fastqc fasttree fastx-toolkit ffindex file fitgcp flexbar fontconfig fontconfig-config fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-glyphicons-halflings fonts-go fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-mathjax fonts-noto-core fonts-noto-hinted fonts-noto-mono fonts-noto-ui-core fonts-oflb-asana-math fonts-open-sans fonts-roboto-hinted fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre freecontact fsa g++ g++-6 g++-8 gasic gatb-core gawk gcc gcc-6 gcc-7-base gcc-8 gdal-data genometools genometools-common gff2aplot gff2ps gfortran gfortran-6 gfortran-8 ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnome-icon-theme gnupg gnupg-agent gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm graphviz grinder gromacs gromacs-data gsettings-desktop-schemas gsfonts gtk-update-icon-cache guile-2.0-libs guile-2.2-libs hhsuite hhsuite-data hicolor-icon-theme hmmer hyphy-common hyphy-mpi ibverbs-providers icu-devtools idba imagemagick imagemagick-6-common imagemagick-6.q16 infernal ipython isympy isympy-common java-common java-wrappers javascript-common 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libbcprov-java libbinutils libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libblas-dev libblas3 libboost-atomic1.67.0 libboost-filesystem1.62.0 libboost-filesystem1.67.0 libboost-iostreams1.62.0 libboost-iostreams1.67.0 libboost-mpi1.62.0 libboost-mpi1.67.0 libboost-program-options1.62.0 libboost-program-options1.67.0 libboost-regex1.62.0 libboost-regex1.67.0 libboost-serialization1.62.0 libboost-serialization1.67.0 libboost-system1.62.0 libboost-system1.67.0 libboost-thread1.62.0 libboost-thread1.67.0 libbrotli1 libbsd-resource-perl libbsd0 libbytecode-java libbz2-dev libc-ares2 libc-dev-bin libc6-dev libcache-cache-perl libcaf-openmpi-3 libcairo-gobject2 libcairo2 libcap2 libcapture-tiny-perl libcarp-always-perl libcarp-clan-perl libcassie1v5 libcc1-0 libcdi-api-java libcdt5 libcgi-fast-perl libcgi-pm-perl libcglib-java libcgraph6 libcharls2 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcoarrays-dev libcoarrays-openmpi-dev libcodemodel-java libcolamd2 libcolord2 libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-dbcp-java libcommons-discovery-java libcommons-httpclient-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-net-java libcommons-parent-java libcommons-pool-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcroco3 libcrypt-rc4-perl libcryptsetup12 libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdata-dumper-simple-perl libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl 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tigr-glimmer tipa tk tk8.6 tk8.6-blt2.5 tm-align tophat tree-puzzle tree-puzzle-doc ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera tzdata ucf unzip vcftools velvet wise wise-data x11-common x11-utils x11-xserver-utils xauth xbitmaps xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xkb-data xml-core xterm xz-utils zalign zip zlib1g-dev 0 upgraded, 0 newly installed, 1551 to remove and 0 not upgraded. After this operation, 7474 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 252159 files and directories currently installed.) Removing abyss (2.1.5-7) ... Removing acedb-other (4.9.39+dfsg.02-4) ... Removing cain-examples (1.10+dfsg-3) ... Removing cain (1.10+dfsg-3) ... Removing python-wxgtk3.0 (3.0.2.0+dfsg-8) ... Removing libwxgtk3.0-gtk3-0v5:amd64 (3.0.4+dfsg-8) ... Removing notification-daemon (3.20.0-4) ... Removing biomaj (1.2.3-11) ... Warning, BioMAJ database for MySQL is not deleted by process removal. Removing openjdk-8-jre:amd64 (8u252-b09-1~deb9u1) ... Removing aevol (5.0-2+b1) ... Removing alien-hunter (1.7-7) ... Removing altree (1.3.1-7+b1) ... Removing amap-align (2.2+git20080214.600fc29+dfsg-1) ... Removing ampliconnoise (1.29-8) ... Removing anfo (0.98-7) ... Removing picard-tools (2.18.25+dfsg-2) ... Removing libpicard-java (2.18.25+dfsg-2) ... Removing ant-contrib (1.0~b3+svn177-10) ... Removing libapache2-reload-perl (0.13-2) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.10-3) ... Removing apache2-bin (2.4.38-3+deb10u8) ... Removing aragorn (1.2.38-2) ... Removing arden (1.0-4) ... Removing at-spi2-core (2.30.0-7) ... Removing libopenmpi-dev:amd64 (3.1.3-11) ... Removing libhwloc-dev:amd64 (1.11.12-3) ... Removing libltdl-dev:amd64 (2.4.6-9) ... Removing automake (1:1.16.1-4) ... Removing autoconf (2.69-11) ... Removing autodock (4.2.6-6) ... 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Removing gasic (0.0.r19-4) ... Removing bowtie (1.2.2+dfsg-4) ... Removing bowtie2 (2.3.4.3-1) ... Removing boxshade (3.3.1-12) ... Removing bsdmainutils (11.1.2+b1) ... Removing build-essential (12.6) ... Removing bwa (0.7.17-3) ... Removing dpkg-dev (1.19.8) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing bzip2-doc (1.0.6-9.2~deb10u1) ... Removing neobio (0.0.20030929-4) ... Removing melting (5.2.0-1) ... Removing fastqc (0.11.8+dfsg-2) ... Removing junit4 (4.12-8) ... Removing openjdk-8-jre-headless:amd64 (8u252-b09-1~deb9u1) ... Removing cain-solvers (1.10+dfsg-3) ... Removing cassiopee (1.0.9-2) ... Removing cd-hit (4.6.8-2) ... Removing cdbfasta (0.99-20100722-5) ... Removing cdbs (0.4.159) ... Removing circos-tools (0.23-1) ... Removing circos (0.69.6+dfsg-2) ... Removing clearcut (1.0.9-3) ... Removing clonalframe (1.2-9) ... Removing theseus (3.3.0-8) ... Removing clustalo (1.2.4-2) ... Removing clustalw (2.1+lgpl-6) ... Removing concavity (0.1+dfsg.1-4) ... Removing conservation-code (20110309.0-7) ... Removing x11-xserver-utils (7.7+8) ... Removing cpp-6 (6.3.0-18+deb9u1) ... Removing libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Removing libcoarrays-dev:amd64 (2.4.0-2) ... Removing gfortran (4:8.3.0-1) ... Removing exim4 (4.92-8+deb10u6) ... Removing exim4-daemon-light (4.92-8+deb10u6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing exim4-base (4.92-8+deb10u6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing cron (3.0pl1-134+deb10u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing cwltool (1.0.20181217162649+dfsg-10) ... Removing macs (2.1.2.1-1) ... Removing cython (0.29.2-2) ... Removing datamash (1.4-1) ... Removing libgtk-3-bin (3.24.5-1) ... Removing default-mysql-client (1.0.5) ... Removing dh-python (3.20190308) ... Removing dialign (2.2.1-10) ... Removing dialign-tx (1.0.2-12) ... Removing dialign-tx-data (1.0.2-12) ... Removing gnupg (2.2.12-1+deb10u2) ... Removing gpg-wks-client (2.2.12-1+deb10u2) ... Removing dirmngr (2.2.12-1+deb10u2) ... Removing discosnp (2.3.0-2) ... Removing disulfinder (1.2.11-8) ... Removing disulfinder-data (1.2.11-8) ... Removing dmidecode (3.2-1) ... Removing libnss-systemd:amd64 (241-7~deb10u8) ... Checking NSS setup... Removing dnaclust (3-6+b1) ... Removing dssp (3.0.0-3+b1) ... Removing dvipng (1.15-1.1) ... Removing embassy-domainatrix (0.1.660-3) ... Removing embassy-domalign (0.1.660-3) ... Removing embassy-domsearch (1:0.1.660-3) ... Removing emboss (6.6.0+dfsg-7+b1) ... Removing emboss-data (6.6.0+dfsg-7) ... Removing emboss-lib (6.6.0+dfsg-7+b1) ... Removing exim4-config (4.92-8+deb10u6) ... Removing fsa (1.15.9+dfsg-4) ... Removing exonerate (2.4.0-4) ... Removing fakeroot (1.23-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing fastdnaml (1.2.2-14) ... Removing fastlink (4.1P-fix100+dfsg-2) ... Removing fasttree (2.1.10-2) ... Removing fastx-toolkit (0.0.14-6) ... Removing hhsuite (3.0~beta3+dfsg-3) ... Removing ffindex (0.9.9.9-2) ... Removing file (1:5.35-4+deb10u2) ... Removing fitgcp (0.0.20150429-2) ... Removing flexbar (1:3.4.0-2) ... Removing libmagickcore-6.q16-3-extra:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Removing libwxgtk3.0-0v5:amd64 (3.0.4+dfsg-8) ... Removing qt-at-spi:amd64 (0.4.0-9) ... Removing libqtgui4:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Removing libpoppler64:amd64 (0.48.0-2+deb9u2) ... Removing ttf-adf-accanthis (0.20110505-3) ... Removing texlive-fonts-extra-links (2018.20190227-2) ... Removing fonts-adf-accanthis (0.20110505-3) ... Removing fonts-adf-berenis (0.20110505-3) ... Removing ttf-adf-gillius (0.20110505-3) ... Removing fonts-adf-gillius (0.20110505-3) ... Removing ttf-adf-universalis (0.20110505-3) ... Removing fonts-adf-universalis (0.20110505-3) ... dpkg: warning: while removing fonts-adf-universalis, directory '/usr/share/fonts/truetype/adf' not empty so not removed Removing fonts-cabin (1.5-2) ... dpkg: warning: while removing fonts-cabin, directory '/usr/share/fonts/opentype/cabin' not empty so not removed Removing fonts-circos-symbols (0.69.6+dfsg-2) ... Removing fonts-cmu (0.7.0-3) ... dpkg: warning: while removing fonts-cmu, directory '/usr/share/fonts/truetype/cmu' not empty so not removed Removing fonts-comfortaa (3.001-2) ... dpkg: warning: while removing fonts-comfortaa, directory '/usr/share/fonts/truetype/comfortaa' not empty so not removed Removing fonts-croscore (20181227-1) ... Removing fonts-crosextra-caladea (20130214-2) ... Removing fonts-crosextra-carlito (20130920-1) ... Removing fonts-dejavu-extra (2.37-1) ... Removing fonts-dejavu-core (2.37-1) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-ebgaramond (0.016-1) ... Removing fonts-ebgaramond-extra (0.016-1) ... dpkg: warning: while removing fonts-ebgaramond-extra, directory '/usr/share/fonts/woff/ebgaramond' not empty so not removed dpkg: warning: while removing fonts-ebgaramond-extra, directory '/usr/share/fonts/truetype/ebgaramond' not empty so not removed dpkg: warning: while removing fonts-ebgaramond-extra, directory '/usr/share/fonts/opentype/ebgaramond' not empty so not removed Removing r-cran-rmarkdown (1.11+dfsg-1) ... Removing r-cran-shiny (1.2.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/woff/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/svg/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/eot/font-awesome' not empty so not removed Removing fonts-freefont-otf (20120503-9) ... dpkg: warning: while removing fonts-freefont-otf, directory '/usr/share/fonts/opentype/freefont' not empty so not removed Removing fonts-freefont-ttf (20120503-9) ... dpkg: warning: while removing fonts-freefont-ttf, directory '/usr/share/fonts/truetype/freefont' not empty so not removed Removing fonts-gfs-artemisia (1.1-5) ... dpkg: warning: while removing fonts-gfs-artemisia, directory '/usr/share/fonts/truetype/artemisia' not empty so not removed Removing fonts-gfs-complutum (1.1-6) ... dpkg: warning: while removing fonts-gfs-complutum, directory '/usr/share/fonts/truetype/complutum' not empty so not removed Removing fonts-gfs-didot (1.1-6) ... dpkg: warning: while removing fonts-gfs-didot, directory '/usr/share/fonts/truetype/didot' not empty so not removed Removing fonts-gfs-neohellenic (1.1-6) ... dpkg: warning: while removing fonts-gfs-neohellenic, directory '/usr/share/fonts/truetype/neohellenic' not empty so not removed Removing fonts-gfs-olga (1.1-5) ... dpkg: warning: while removing fonts-gfs-olga, directory '/usr/share/fonts/truetype/olga' not empty so not removed Removing fonts-gfs-solomos (1.1-5) ... dpkg: warning: while removing fonts-gfs-solomos, directory '/usr/share/fonts/truetype/solomos' not empty so not removed Removing r-cran-knitr (1.21+dfsg-2) ... Removing python3-schema-salad (3.0.20181206233650-2) ... Removing fonts-go (0~20170330-1) ... dpkg: warning: while removing fonts-go, directory '/usr/share/fonts/fonts-go' not empty so not removed Removing fonts-junicode (1.001-2) ... Removing fonts-lato (2.0-2) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing fonts-liberation (1:1.07.4-9) ... dpkg: warning: while removing fonts-liberation, directory '/usr/share/fonts/truetype/liberation' not empty so not removed Removing fonts-linuxlibertine (5.3.0-4) ... Removing lmodern (2.004.5-6) ... Removing tipa (2:1.3-20) ... Removing fonts-lobstertwo (2.0-2) ... dpkg: warning: while removing fonts-lobstertwo, directory '/usr/share/fonts/opentype/lobstertwo' not empty so not removed Removing fonts-lobster (2.0-2) ... dpkg: warning: while removing fonts-lobster, directory '/usr/share/fonts/opentype/lobster' not empty so not removed Removing python-cogent (1.9-14) ... Removing python-matplotlib (2.2.3-6) ... Removing python-matplotlib2-data (2.2.3-6) ... Removing python-matplotlib-data (3.0.2-2) ... Removing fonts-lyx (2.3.2-1) ... dpkg: warning: while removing fonts-lyx, directory '/usr/share/fonts/truetype/lyx' not empty so not removed Removing gromacs (2019.1-1) ... Removing gromacs-data (2019.1-1) ... Removing libjs-mathjax (2.7.4+dfsg-1) ... Removing fonts-mathjax (2.7.4+dfsg-1) ... dpkg: warning: while removing fonts-mathjax, directory '/usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf' not empty so not removed Removing fonts-noto-hinted (20181227-1) ... Removing fonts-noto-core (20181227-1) ... Removing fonts-noto-mono (20181227-1) ... Removing fonts-noto-ui-core (20181227-1) ... dpkg: warning: while removing fonts-noto-ui-core, directory '/usr/share/fonts/truetype/noto' not empty so not removed Removing fonts-oflb-asana-math (000.907-6) ... dpkg: warning: while removing fonts-oflb-asana-math, directory '/usr/share/fonts/truetype/asana-math' not empty so not removed Removing fonts-open-sans (1.11-1) ... dpkg: warning: while removing fonts-open-sans, directory '/usr/share/fonts/truetype/open-sans' not empty so not removed Removing fonts-roboto-hinted (2:0~20170802-3) ... dpkg: warning: while removing fonts-roboto-hinted, directory '/usr/share/fonts/truetype/roboto/hinted' not empty so not removed Removing fonts-roboto-unhinted (2:0~20170802-3) ... dpkg: warning: while removing fonts-roboto-unhinted, directory '/usr/share/fonts/truetype/roboto/unhinted/RobotoTTF' not empty so not removed Removing fonts-sil-gentium (20081126:1.03-2) ... dpkg: warning: while removing fonts-sil-gentium, directory '/usr/share/fonts/truetype/gentium' not empty so not removed Removing fonts-sil-gentium-basic (1.102-1) ... dpkg: warning: while removing fonts-sil-gentium-basic, directory '/usr/share/fonts/truetype/gentium-basic' not empty so not removed Removing fonts-sil-gentiumplus (5.000-2) ... dpkg: warning: while removing fonts-sil-gentiumplus, directory '/usr/share/fonts/truetype/gentiumplus' not empty so not removed Removing fonts-sil-gentiumplus-compact (5.000-2) ... dpkg: warning: while removing fonts-sil-gentiumplus-compact, directory '/usr/share/fonts/opentype/gentiumplus' not empty so not removed Removing fonts-stix (1.1.1-4) ... dpkg: warning: while removing fonts-stix, directory '/usr/share/fonts/opentype/stix-word' not empty so not removed dpkg: warning: while removing fonts-stix, directory '/usr/share/fonts/opentype/stix' not empty so not removed Removing fonts-texgyre (20180621-3) ... Removing freecontact (1.0.21-7+b1) ... Removing gatb-core (1.4.1+git20181225.44d5a44+dfsg-3) ... Removing mummer (3.23+dfsg-4) ... Removing gff2ps (0.98l-2) ... Removing gawk (1:4.2.1+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Removing libubsan0:amd64 (7.4.0-6) ... Removing libcilkrts5:amd64 (7.4.0-6) ... Removing gcc-7-base:amd64 (7.4.0-6) ... Removing python3-gdal (2.4.0+dfsg-1+b1) ... Removing python-gdal (2.4.0+dfsg-1+b1) ... Removing libgdal20 (2.4.0+dfsg-1+b1) ... Removing gdal-data (2.4.0+dfsg-1) ... Removing genometools (1.5.10+ds-3) ... Removing genometools-common (1.5.10+ds-3) ... Removing gff2aplot (2.0-11) ... Removing gfortran-8 (8.3.0-6) ... Removing raster3d (3.0-3-5) ... Removing ps2eps (1.68+binaryfree-2) ... Removing ghostscript (9.27~dfsg-2+deb10u5) ... Removing glam2 (1064-5) ... Removing glpk-utils (4.65-2) ... Removing gnome-icon-theme (3.12.0-3) ... update-alternatives: using /usr/share/icons/gnome/scalable/places/gnome-foot.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode update-alternatives: warning: skip creation of /usr/share/icons/gnome/256x256/places/start-here.png because associated file /usr/share/icons/gnome/256x256/places/gnome-foot.png (of link group start-here.svg) doesn't exist Removing gnupg-agent (2.2.12-1+deb10u2) ... Removing gnupg-l10n (2.2.12-1+deb10u2) ... Removing gnupg-utils (2.2.12-1+deb10u2) ... Removing gpg-wks-server (2.2.12-1+deb10u2) ... Removing gpg (2.2.12-1+deb10u2) ... Removing gpg-agent (2.2.12-1+deb10u2) ... Removing gpgsm (2.2.12-1+deb10u2) ... Removing gpgconf (2.2.12-1+deb10u2) ... Removing python-pygraphviz (1.5-1) ... Removing libgraphviz-perl (2.22-1) ... Removing graphviz (2.40.1-6+deb10u1) ... Removing grinder (0.5.4-5) ... Removing python3-renderpm:amd64 (3.5.13-1+deb10u1) ... Removing python-renderpm:amd64 (3.5.13-1+deb10u1) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Removing libgtk2.0-bin (2.24.32-3) ... Removing guile-2.0-libs:amd64 (2.0.13+1-5.1) ... Removing mailutils (1:3.5-4) ... Removing libmailutils5:amd64 (1:3.5-4) ... Removing guile-2.2-libs:amd64 (2.2.4+1-2+deb10u1) ... Removing hhsuite-data (3.0~beta3+dfsg-3) ... Removing imagemagick (8:6.9.10.23+dfsg-2.1+deb10u1) ... Removing imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Removing hmmer (3.2.1+dfsg-1) ... Removing hyphy-mpi (2.3.14+dfsg-1) ... Removing hyphy-common (2.3.14+dfsg-1) ... Removing libibverbs-dev:amd64 (22.1-1) ... Removing ibverbs-providers:amd64 (22.1-1) ... Removing libicu-dev:amd64 (63.1-6+deb10u3) ... Removing icu-devtools (63.1-6+deb10u3) ... Removing idba (1.1.3-3) ... Removing libmagickwand-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Removing libmagickcore-6.q16-3:amd64 (8:6.9.7.4+dfsg-11+deb9u8) ... Removing infernal (1.1.2-2) ... Removing ipython (5.8.0-1+deb10u1) ... Removing isympy (1.0-3) ... Removing isympy-common (1.3-2) ... Removing java-wrappers (0.3) ... Removing javascript-common (11) ... Removing jellyfish (2.2.10-2) ... Removing kalign (1:2.03+20110620-5) ... Removing kissplice (2.4.0-p1-4) ... Removing krb5-locales (1.17-3+deb10u4) ... Removing laptop-detect (0.16) ... Removing last-align (963-2) ... Removing libace-perl (1.92-8+b1) ... Removing sra-toolkit (2.9.3+dfsg-1+b1) ... Removing libnetcdf13:amd64 (1:4.6.2-1) ... Removing mariadb-client-10.3 (1:10.3.34-0+deb10u1) ... Removing mariadb-client-core-10.3 (1:10.3.34-0+deb10u1) ... Removing libaio1:amd64 (0.3.112-3) ... Removing liblog-dispatch-perl (2.68-1) ... Removing libspecio-perl (0.43-1) ... Removing libmro-compat-perl (0.13-1) ... Removing libclass-c3-perl (0.34-1) ... Removing libalgorithm-c3-perl (0.10-1) ... Removing libtest-most-perl (0.35-1) ... Removing libtest-differences-perl (0.65-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-merge-perl (0.08-3) ... Removing libalgorithm-diff-xs-perl (0.04-5+b1) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libglpk-java:amd64 (1.12.0-1) ... Removing libglpk40:amd64 (4.65-2) ... Removing libamd2:amd64 (1:5.4.0+dfsg-1) ... Removing libanfo0 (0.98-7) ... Removing libann0 (1.1.2+doc-7) ... Removing libjets3t-java (0.8.1+dfsg-4) ... Removing libaxis-java (1.4-28) ... Removing libcommons-discovery-java (0.5-3) ... Removing libaprutil1-ldap:amd64 (1.6.1-4) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.1-4) ... Removing libaprutil1:amd64 (1.6.1-4) ... Removing libapr1:amd64 (1.6.5-1+b1) ... Removing libargtable2-0 (13-1) ... Removing libarmadillo9 (1:9.200.7+dfsg-1) ... Removing libarpack2:amd64 (3.7.0-2) ... Removing libarray-compare-perl (3.0.2-1) ... Removing libart-2.0-2:amd64 (2.3.21-4) ... Removing libasan3:amd64 (6.3.0-18+deb9u1) ... Removing libgfortran-8-dev:amd64 (8.3.0-6) ... Removing libcglib-java (3.2.10-1) ... Removing libasm-java (7.0-1) ... Removing pinentry-curses (1.1.0-2) ... Removing libassuan0:amd64 (2.5.2-1) ... Removing libpulse0:amd64 (12.2-4+deb10u1) ... Removing libasyncns0:amd64 (0.8-6) ... Removing libatk-wrapper-java-jni:amd64 (0.33.3-22+deb10u1) ... Removing libatk-wrapper-java (0.33.3-22+deb10u1) ... Removing python-glade2 (2.24.0-5.1+b1) ... Removing python-gtk2 (2.24.0-5.1+b1) ... Removing libglade2-0:amd64 (1:2.6.4-2+b1) ... Removing libgromacs2 (2016.1-2) ... Removing libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Removing r-recommended (3.5.2-1) ... Removing r-cran-rpart (4.1-13-1+b1) ... Removing r-cran-survival (2.43-3-1) ... Removing r-cran-vegan (2.5-4+dfsg-3) ... Removing libatlas3-base:amd64 (3.10.3-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Removing libtbb2:amd64 (2018~U6-4) ... Removing pandoc (2.2.1-3+b2) ... Removing libaudio2:amd64 (1.9.4-6) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing texlive-pstricks (2018.20190227-2) ... Removing texlive-generic-recommended (2018.20190227-2) ... Removing libcupsfilters1:amd64 (1.21.6-5) ... Removing libnamespace-autoclean-perl (0.28-1) ... Removing libnamespace-clean-perl (0.27-1) ... Removing libb-hooks-endofscope-perl (0.24-1) ... Removing libmoo-perl (2.003004-2) ... Removing libparams-validate-perl (1.29-1+b1) ... Removing smalt (0.7.6-8) ... Removing libbambamc0 (0.0.50-3) ... Removing libbamtools2.4.0 (2.4.1+dfsg-1) ... Removing libbamtools2.5.1:amd64 (2.5.1+dfsg-3) ... Removing libbarclay-java (2.1.0-3) ... Removing libbcprov-java (1.60-1) ... Removing libbio-asn1-entrezgene-perl (1.720-2) ... Removing libbio-perl-run-perl (1.7.2-4) ... Removing libbio-perl-perl (1.7.2-3) ... Removing libbiojava-java (1:1.7.1-8) ... Removing libbiojava1.7-java (1:1.7.1-8) ... Removing libdate-calc-xs-perl (6.4-1+b4) ... Removing libdate-calc-perl (6.4-1) ... Removing libbit-vector-perl (7.4-1+b5) ... Removing libblas-common (3.7.0-2) ... Removing liblapack-dev:amd64 (3.8.0-2) ... Removing libblas-dev:amd64 (3.8.0-2) ... Removing r-cran-qtl (1.44-9-1) ... Removing r-cran-xml2 (1.2.0-3) ... Removing r-other-mott-happy.hbrem (2.4-3) ... Removing mira-rfam-12s-rrna (4.9.6-4) ... Removing mira-assembler (4.9.6-4+b1) ... Removing libboost-thread1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing libboost-atomic1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-filesystem1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing libboost-iostreams1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libcassie1v5 (1.0.9-2) ... Removing libboost-iostreams1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing libboost-mpi1.62.0 (1.62.0+dfsg-4) ... Removing prime-phylo (1.0.11-7+b1) ... Removing libboost-mpi1.67.0 (1.67.0-13+deb10u1) ... Removing libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-program-options1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing libboost-regex1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-regex1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing libboost-serialization1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-serialization1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing libboost-thread1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-system1.62.0:amd64 (1.62.0+dfsg-4) ... Removing libboost-system1.67.0:amd64 (1.67.0-13+deb10u1) ... Removing node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Removing nodejs (10.24.0~dfsg-1~deb10u1) ... Removing libbsd-resource-perl (1.2911-1+b3) ... Removing lynx (2.8.9rel.1-3+deb10u1) ... Removing x11-utils (7.7+4) ... Removing libbytecode-java (0.92.svn.20090106-2) ... Removing libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Removing libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Removing libc-ares2:amd64 (1.14.0-1+deb10u1) ... Removing libpng-dev:amd64 (1.6.36-6) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Removing libnuma-dev:amd64 (2.0.12-1) ... Removing libpcre3-dev:amd64 (2:8.39-12) ... Removing libreadline-dev:amd64 (7.0-5) ... Removing libcache-cache-perl (1.08-2) ... Removing libcaf-openmpi-3:amd64 (2.4.0-2) ... Removing python-cairo:amd64 (1.16.2-1+b1) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libcarp-always-perl (0.16-1) ... Removing libcarp-clan-perl (6.07-1) ... Removing libgvpr2 (2.40.1-6+deb10u1) ... Removing libgvc6 (2.40.1-6+deb10u1) ... Removing libcgi-fast-perl (1:2.13-1) ... Removing libcgi-pm-perl (4.40-1) ... Removing libcgraph6 (2.40.1-6+deb10u1) ... Removing libcharls2:amd64 (2.0.0+dfsg-1) ... Removing libclass-c3-xs-perl (0.14-1+b3) ... Removing libparams-validationcompiler-perl (0.30-1) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libxmlrpc-lite-perl (0.717-2) ... Removing libsoap-lite-perl (1.27-1) ... Removing libclass-inspector-perl (1.32-1) ... Removing librole-tiny-perl (2.000006-1) ... Removing libclass-method-modifiers-perl (2.12-1) ... Removing libclass-xsaccessor-perl (1.19-3+b2) ... Removing libclone-perl (0.41-1+b1) ... Removing libcolamd2:amd64 (1:5.4.0+dfsg-1) ... Removing liblog4j2-java (2.17.1-1~deb10u1) ... Removing liblightcouch-java (0.0.6-1) ... Removing libcommons-httpclient-java (3.1-15) ... Removing libcommons-collections3-java (3.2.2-2) ... Removing libcommons-dbcp-java (1.4-6) ... Removing libcommons-math3-java (3.6.1-3) ... Removing libcommons-net-java (3.6-1) ... Removing libcommons-pool-java (1.6-3) ... Removing libconfig-general-perl (2.63-1) ... Removing libconfig-inifiles-perl (3.000001-1) ... Removing libconvert-binary-c-perl (0.78-1+b4) ... Removing libmime-tools-perl (5.509-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-3) ... Removing libxerces-c3.1:amd64 (3.1.4+debian-2+deb9u1) ... Removing libstaden-read11:amd64 (1.14.8-2) ... Removing libdapserver7v5:amd64 (3.20.3-1) ... Removing libdapclient6v5:amd64 (3.20.3-1) ... Removing libdap25:amd64 (3.20.3-1) ... Removing libdata-dump-perl (1.23-1) ... Removing libdata-dumper-simple-perl (0.11-5) ... Removing libeval-closure-perl (0.14-1) ... Removing libsub-exporter-perl (0.987-1) ... Removing libdata-optlist-perl (0.110-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libdate-manip-perl (6.76-1) ... Removing texlive-extra-utils (2018.20190227-2) ... Removing libunicode-linebreak-perl (0.0.20190101-1) ... Removing libsombok3:amd64 (2.4.0-2) ... Removing libdbd-mysql-perl:amd64 (4.050-2) ... Removing libdbd-pg-perl (3.7.4-3) ... Removing libdbd-sqlite3-perl:amd64 (1.62-3) ... Removing libdbi-perl:amd64 (1.642-1+deb10u2) ... Removing libqt4-dbus:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Removing qdbus (4:4.8.7+dfsg-18+deb10u1) ... Removing libqtdbus4:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Removing libnet-dbus-perl (1.1.0-5+b1) ... Removing libmagickcore-6.q16-6-extra:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Removing libmagickwand-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Removing libmagickcore-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Removing libheif1:amd64 (1.3.2-2~deb10u1) ... Removing libde265-0:amd64 (1.0.3-1+b1) ... Removing samtools (1.9-4) ... Removing python-htseq (0.11.2-1) ... Removing python-pysam (0.15.2+ds-2) ... Removing libhts2:amd64 (1.9-12~deb10u1) ... Removing tabix (1.9-12~deb10u1) ... Removing libdeflate0:amd64 (1.2-1) ... Removing libdevel-lexalias-perl (0.05-2+b1) ... Removing libdevel-caller-perl (2.06-2+b1) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-stacktrace-perl (2.0300-1) ... Removing libpod-coverage-perl (0.23-1) ... Removing libdevel-symdump-perl (2.18-3) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing libdivsufsort3:amd64 (2.0.1-4) ... Removing libdjvulibre21:amd64 (3.5.27.1-10+deb10u1) ... Removing libdjvulibre-text (3.5.27.1-10+deb10u1) ... Removing libsaxonhe-java (9.9.0.2+dfsg-1) ... Removing libeigen3-dev (3.3.7-1) ... Removing pkg-config (0.29-6) ... Removing libdpkg-perl (1.19.8) ... Removing python-pyglet (1.3.0-1) ... Removing libgl1-mesa-glx:amd64 (18.3.6-2+deb10u1) ... Removing libwayland-egl1-mesa:amd64 (18.3.6-2+deb10u1) ... Removing libegl1-mesa:amd64 (18.3.6-2+deb10u1) ... Removing libegl1:amd64 (1.1.0-1) ... Removing libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing libgbm1:amd64 (18.3.6-2+deb10u1) ... Removing pvm (3.4.6-2) ... Removing phyml (3:3.3.20180621-2) ... Removing python-mpi4py (2.0.0-3+b3) ... Removing mpi-default-bin (1.13) ... Removing openmpi-bin (3.1.3-11) ... Removing openssh-client (1:7.9p1-10+deb10u2) ... Removing libhsqldb-java (2.4.1-2) ... Removing libservlet3.1-java (1:4.0.1-2) ... Removing libel-api-java (3.0.0-2+deb10u1) ... Removing libelk0 (3.99.8-4.2+b1) ... Removing libmime-lite-perl (3.030-2) ... Removing libemail-date-format-perl (1.005-1) ... Removing libxml-xpath-perl (1.44-1) ... Removing mipe (1.1-7) ... Removing libxml-twig-perl (1:3.50-1.1) ... Removing libxml-dom-xpath-perl (0.14-3) ... Removing libxml-dom-perl (1.44-2) ... Removing libepsilon1:amd64 (0.9.2+dfsg-4) ... Removing liberror-perl (0.17027-2) ... Removing libgnutls-dane0:amd64 (3.6.7-4+deb10u8) ... Removing libunbound8:amd64 (1.9.0-2+deb10u2) ... Removing zalign (0.9.1-4) ... Removing libopenmpi3:amd64 (3.1.3-11) ... Removing libpmix2:amd64 (3.1.2-3) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing python3.5 (3.5.3-1+deb9u1) ... Removing python3.5-minimal (3.5.3-1+deb9u1) ... Removing libwxbase3.0-0v5:amd64 (3.0.4+dfsg-8) ... Removing python-dev (2.7.16-1) ... Removing python2-dev (2.7.16-1) ... Removing python2.7-dev (2.7.16-2+deb10u1) ... Removing libpython-dev:amd64 (2.7.16-1) ... Removing libtype-tiny-perl (1.004004-1) ... Removing libsvg-graph-perl (0.02-3) ... Removing libstatistics-descriptive-perl (3.0702-1) ... Removing liblist-moreutils-perl (0.416-1+b4) ... Removing libexporter-tiny-perl (1.002001-1) ... Removing libopenmpi2:amd64 (2.0.2-2) ... Removing libfabric1 (1.6.2-3) ... Removing libfakeroot:amd64 (1.23-1) ... Removing libfcgi-perl (0.78-2+b3) ... Removing libffindex0 (0.9.9.9-2) ... Removing libgromacs4:amd64 (2019.1-1) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfftw3-single3:amd64 (3.3.8-2) ... Removing libfile-mimeinfo-perl (0.29-1) ... Removing libfile-desktopentry-perl (0.22-1) ... Removing libfile-basedir-perl (0.08-1) ... Removing libfile-fcntllock-perl (0.22-3+b5) ... Removing libfile-homedir-perl (1.004-1) ... Removing libtree-dagnode-perl (1.31-1) ... Removing libfile-slurp-tiny-perl (0.004-1) ... Removing libfile-which-perl (1.23-1) ... Removing libfindbin-libs-perl (2.190.02-1) ... Removing libsndfile1:amd64 (1.0.28-6+deb10u1) ... Removing libflac8:amd64 (1.3.2-3+deb10u2) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing libfont-ttf-perl (1.06-1) ... Removing tex-gyre (20180621-3) ... Removing xfonts-utils (1:7.7+6) ... Removing libfontenc1:amd64 (1:1.1.3-1+b2) ... Removing libfreecontact0v5:amd64 (1.0.21-7+b1) ... Removing libfreemarker-java (2.3.23-9) ... Removing xterm (344-1+deb10u2) ... Removing libspatialite7:amd64 (4.3.0a-5+b2) ... Removing libfreexl1:amd64 (1.0.5-3) ... Removing libfreezethaw-perl (0.5001-2) ... Removing libfuse2:amd64 (2.9.9-1+deb10u1) ... Removing libfyba0:amd64 (4.1.1-6) ... Removing rnahybrid (2.1.2-5) ... Removing libg20 (0.72-8+b1) ... Removing libgail-common:amd64 (2.24.32-3) ... Removing libgail18:amd64 (2.24.32-3) ... Removing libgatbcore2 (1.4.1+git20181225.44d5a44+dfsg-3) ... Removing libgatk-native-bindings-java (1.0.0-2) ... Removing libgc1c2:amd64 (1:7.6.4-0.4) ... Removing libgd-graph-perl (1.54~ds-2) ... Removing libgd-text-perl (0.86-9) ... Removing libgd-perl (2.71-2) ... Removing libgd3:amd64 (2.2.5-5.2) ... Removing rename (1.10-1) ... Removing ssake (4.0-2) ... Removing libmailtools-perl (2.18-1) ... Removing libgraphics-colorobject-perl (0.5.0-7.1) ... Removing libgraphics-colornames-perl (2.11-7.1) ... Removing vcftools (0.1.16-1) ... Removing rtax (0.984-6) ... Removing ruby2.3 (2.3.3-1+deb9u8) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u8) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libnotify4:amd64 (0.7.7-4) ... Removing libgdk-pixbuf2.0-bin (2.38.1+dfsg-1) ... Removing libgeos-c1v5:amd64 (3.7.1-1) ... Removing libgeos-3.7.1:amd64 (3.7.1-1) ... Removing libgeotiff2:amd64 (1.4.3-1) ... Removing libgetopt-euclid-perl (0.4.5-2) ... Removing libgetopt-simple-perl (1.52-5) ... Removing libgoogle-glog0v5 (0.3.5-1) ... Removing libgflags2.2 (2.2.2-1) ... Removing libgflags2v5 (2.1.2-4) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing tm-align (20170708+dfsg-2) ... Removing python3-scipy (1.1.0-7) ... Removing libgkl-java (0.8.5+dfsg-2) ... Removing libgkl-jni (0.8.5+dfsg-2) ... Removing wise (2.4.1-21) ... Removing sigma-align (1.1.3-6) ... Removing libglib2.0-data (2.58.3-2+deb10u3) ... Removing libglu1-mesa:amd64 (9.0.0-2.1+b3) ... Removing velvet (1.2.10+dfsg1-5) ... Removing seqan-apps (2.4.0+dfsg-11) ... Removing libgoogle-gson-java (2.8.5-3) ... Removing libgraph-perl (1:0.9704-1) ... Removing libgsasl7 (1.8.0-8+deb10u1) ... Removing libmath-tamuanova-perl (1.0.2-2+b7) ... Removing libtamuanova-0.2 (0.2-4+b1) ... Removing libgsl23:amd64 (2.5+dfsg-6) ... Removing libgslcblas0:amd64 (2.5+dfsg-6) ... Removing libpq5:amd64 (11.16-0+deb10u1) ... Removing libgtextutils0v5:amd64 (0.7-6) ... Removing libgts-bin (0.7.6+darcs121130-4) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libhamcrest-java (1.3-9) ... Removing libjansi-java (1.17.1-1) ... Removing libjansi-native-java (1.8-1) ... Removing libhawtjni-runtime-java (1.16-1) ... Removing libhdf4-0-alt (4.2.13-4) ... Removing libkdf5-2 (2.9.3+dfsg-2) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libhpdf-2.2.1 (2.2.1-1.1+b1) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.15-1) ... Removing libhts1:amd64 (1.3.2-2) ... Removing libhttp-daemon-perl (6.01-3) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libicu4j-java (62.1-2) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Removing littler (0.3.6-1) ... Removing libopenexr22:amd64 (2.2.0-11+b1) ... Removing libilmbase12:amd64 (2.2.0-12) ... Removing libopenexr23:amd64 (2.2.1-4.1+deb10u1) ... Removing libilmbase23:amd64 (2.2.1-2) ... Removing python-imaging (4.0.0-4+deb9u1) ... Removing python-biopython (1.73+dfsg-1) ... Removing python-reportlab (3.5.13-1+deb10u1) ... Removing python-pil:amd64 (5.4.1-2+deb10u3) ... Removing python3-biopython (1.73+dfsg-1) ... Removing python3-reportlab (3.5.13-1+deb10u1) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libimport-into-perl (1.002005-1) ... Removing libintellij-annotations-java (17.0.0-1) ... Removing libio-all-perl (0.87-1) ... Removing libipc-run-perl (20180523.0-1) ... Removing libio-pty-perl (1:1.08-1.1+b5) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-2+deb10u1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-shareable-perl (0.61-2) ... Removing libipc-sharelite-perl (0.17-4+b3) ... Removing libipc-system-simple-perl (1.25-4) ... Removing libisl15:amd64 (0.18-1) ... Removing libmsv-java (2009.1+dfsg1-6) ... Removing libisorelax-java (20041111-12) ... Removing libjansson4:amd64 (2.12-1) ... Removing libjava-xmlbuilder-java (0.4-2) ... Removing libxom-java (1.2.10-1) ... Removing libjdom1-java (1.1.3-2) ... Removing libpoppler82:amd64 (0.71.0-5) ... Removing netpbm (2:10.0-15.3+b2) ... Removing libjbzip2-java (0.9.1-5) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjcommon-java (1.0.23-1) ... Removing libjellyfish-2.0-2:amd64 (2.2.10-2) ... Removing libjemalloc1 (3.6.0-9.1) ... Removing libjetbrains-annotations-java (17.0.0-1) ... Removing libjgoodies-forms-java (1.9.0-3) ... Removing libjgoodies-common-java (1.8.1-2) ... Removing libjoptsimple-java (5.0.4-3) ... Removing libjpeg-dev (1:1.5.2-2+deb10u1) ... Removing libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Removing perl-tk (1:804.033-2+b3) ... Removing libjs-d3 (3.5.17-2) ... Removing libjs-es5-shim (4.5.12-1) ... Removing r-cran-highr (0.7+dfsg-1) ... Removing libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Removing python-future (0.16.0-1) ... Removing python-configparser (3.5.0b2-1) ... Removing libjs-sphinxdoc (1.8.4-1) ... Removing pynast (1.2.2-4) ... Removing libjs-jquery-datatables (1.10.19+dfsg-1) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Removing libjs-jquery-ui (1.12.1+dfsg-5) ... Removing libjs-json (0~20180723-2) ... Removing libjs-microplugin.js (0.0.3+dfsg-1) ... Removing libjs-modernizr (2.6.2+ds1-3) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing libjs-sifter.js (0.5.3+dfsg-1) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Removing libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Removing libjsch-java (0.1.55-1) ... Removing libjsoncpp1:amd64 (1.7.4-3) ... Removing libjsp-api-java (2.3.4-2+deb10u1) ... Removing libjxr-tools (1.1-6+b1) ... Removing libjxr0:amd64 (1.1-6+b1) ... Removing libjzlib-java (1.1.3-2) ... Removing libkmlxsd1:amd64 (1.3.0-7) ... Removing libkmlregionator1:amd64 (1.3.0-7) ... Removing libkmlconvenience1:amd64 (1.3.0-7) ... Removing libkmlengine1:amd64 (1.3.0-7) ... Removing libkmldom1:amd64 (1.3.0-7) ... Removing libksba8:amd64 (1.3.5-2) ... Removing libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Removing liblab-gamut1 (2.40.1-6+deb10u1) ... Removing python-scipy (1.1.0-7) ... Removing python3-numpy (1:1.16.2-1) ... Removing libmng1:amd64 (1.0.10+dfsg-3.1+b5) ... Removing liblist-allutils-perl (0.15-1) ... Removing liblist-someutils-perl (0.56-1) ... Removing liblist-utilsby-perl (0.11-1) ... Removing ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing med-tasks (3.3) ... Removing liblog-log4perl-perl (1.49-1) ... Removing liblog4j1.2-java (1.2.17-8+deb10u2) ... Removing liblqr-1-0:amd64 (0.4.2-2.1) ... Removing libodbc1:amd64 (2.3.6-0.1) ... Removing liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing liblzma-dev:amd64 (5.2.4-1+deb10u1) ... Removing liblzo2-2:amd64 (2.10-0.1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmail-java (1.6.2-1) ... Removing libmail-sendmail-perl (0.80-1) ... Removing libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Removing libmath-bezier-perl (0.01-2) ... Removing libmath-spline-perl (0.02-2) ... Removing libmath-derivative-perl (1.01-1) ... Removing libmath-random-mt-perl (1.17-1+b5) ... Removing libmath-round-perl (0.07-1) ... Removing libmath-vec-perl (1.01-3) ... Removing libmath-vecstat-perl (0.08-2) ... Removing libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Removing libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Removing libmbedtls-dev:amd64 (2.16.0-1) ... Removing libncbi-vdb2 (2.9.3+dfsg-2) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmime-charset-perl (1.012.2-1) ... Removing libmime-types-perl (2.17-1) ... Removing libmldbm-perl (2.05-2) ... Removing libmongodb-java (3.6.3-2) ... Removing libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Removing python3-mypy (0.670-2) ... Removing python3-distutils (3.7.3-1) ... Removing python3-sparqlwrapper (1.8.2-0.1) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libmysql-java (5.1.49-0+deb9u1) ... Removing libncbi-wvdb2 (2.9.3+dfsg-2) ... Removing readseq (1-13) ... Removing ncbi-tools-bin (6.1.20170106+dfsg1-0+deb10u2) ... Removing libncbi6:amd64 (6.1.20170106+dfsg1-0+deb10u2) ... Removing libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Removing libncurses5-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing parallel (20161222-1.1) ... Removing 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Removing 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Removing procps (2:3.3.15-2) ... Removing libnetpbm10 (2:10.0-15.3+b2) ... Removing libngs-sdk1 (1.3.0-2) ... Removing libnl-route-3-dev:amd64 (3.4.0-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-dev:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libnpth0:amd64 (1.6-1) ... Removing libntlm0:amd64 (1.5-1+deb10u1) ... Removing libx265-165:amd64 (2.9-4) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libstatistics-basic-perl (1.6611-1) ... Removing libnumber-format-perl (1.75-1) ... Removing libogdi3.2 (3.2.1+ds-4) ... Removing libvorbisenc2:amd64 (1.3.6-2) ... Removing libvorbis0a:amd64 (1.3.6-2) ... Removing libogg0:amd64 (1.3.2-1+b1) ... Removing liboro-java (2.0.8a-13) ... Removing libossp-uuid-perl (1.6.2-1.5+b7) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Removing libpackage-stash-perl (0.38-1) ... Removing libpackage-stash-xs-perl (0.29-1) ... Removing libpadwalker-perl (2.3-1+b1) ... Removing texlive-pstricks-doc (2018.20190227-2) ... Removing texlive-latex-extra-doc (2018.20190227-2) ... Removing libparams-util-perl (1.07-3+b4) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967015+dfsg-2) ... Removing libpathplan4 (2.40.1-6+deb10u1) ... Removing libpcre16-3:amd64 (2:8.39-12) ... Removing libpcre32-3:amd64 (2:8.39-12) ... Removing libpcrecpp0v5:amd64 (2:8.39-12) ... Removing libperl4-corelibs-perl (0.004-1+deb10u1) ... Removing libperlio-gzip-perl (0.19-1+b5) ... Removing libpng-tools (1.6.36-6) ... Removing r-cran-tikzdevice (0.12-1) ... Removing r-cran-png (0.1-7-3) ... Removing libwmf0.2-7:amd64 (0.2.8.4-14) ... Removing libpopt0:amd64 (1.16-12) ... Removing libpostscript-perl (0.06-3) ... Removing libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Removing libprocps7:amd64 (2:3.3.15-2) ... Removing proj-bin (5.2.0-1) ... Removing libproj13:amd64 (5.2.0-1) ... Removing libprotobuf10:amd64 (3.0.0-9) ... Removing libprotobuf17:amd64 (3.6.1.3-2) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpth20:amd64 (2.0.7-20+b2) ... Removing libsquid1 (1.9g+cvs20050121-11) ... Removing libpvm3:amd64 (3.4.6-2) ... Removing prosper (2018.20190227-2) ... Removing texlive-latex-extra (2018.20190227-2) ... Removing python-wxversion (3.0.2.0+dfsg-8) ... Removing texlive-pictures (2018.20190227-2) ... Removing python-ipython (5.8.0-1+deb10u1) ... Removing python-prompt-toolkit (1.0.15-1) ... Removing python-wcwidth (0.1.7+dfsg1-3) ... Removing libpython2-dev:amd64 (2.7.16-1) ... Removing pdb2pqr (2.1.1+dfsg-5) ... Removing python-numpy (1:1.16.2-1) ... Removing libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Removing libqhull7:amd64 (2015.2-4) ... Removing libqt4-xml:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Removing libqtcore4:amd64 (4:4.8.7+dfsg-18+deb10u1) ... Removing r-cran-mgcv (1.8-27-1) ... Removing r-cran-nlme (3.1.137-1+b3) ... Removing r-cran-kernsmooth (2.23-15-3+b4) ... Removing libreadline5:amd64 (5.2+dfsg-3+b13) ... Removing mothur (1.41.21-1) ... Removing libreadonly-perl (2.050-1) ... Removing libref-util-perl (0.204-1) ... Removing libref-util-xs-perl (0.117-1+b1) ... Removing libregexp-common-perl (2017060201-1) ... Removing libregexp-java (1.5-4) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libspiffy-perl (0.46-1) ... Removing libscalar-list-utils-perl (1:1.50-1+b1) ... Removing sysstat (12.0.3-2) ... Removing libservlet-api-java (4.0.1-2) ... Removing libset-intspan-perl (1.19-1) ... Removing libset-scalar-perl (1.29-2) ... Removing m4 (1.4.18-2) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libsort-naturally-perl (1.03-2) ... Removing tree-puzzle (5.2-11) ... Removing libsprng2 (2.0a-12) ... Removing squizz (0.99d+dfsg-2) ... Removing libsquizz (0.99d+dfsg-2) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing staden-io-lib-utils (1.14.11-6) ... Removing libstaden-read13:amd64 (1.14.11-6) ... Removing libstrictures-perl (2.000005-1) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.14-1+b1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.21-1+b3) ... Removing libsub-quote-perl (2.005001-1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1) ... Removing libsuitesparseconfig4:amd64 (1:4.5.4-1) ... Removing libsuitesparseconfig5:amd64 (1:5.4.0+dfsg-1) ... Removing libsvg-perl (2.84-1) ... Removing libsynctex1:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Removing libsys-hostname-long-perl (1.5-1) ... Removing libtask-weaken-perl (1.06-1) ... Removing tk (8.6.9+1) ... Removing tk8.6 (8.6.9-2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4) ... Removing libterm-readkey-perl (2.38-1) ... Removing libtest-deep-perl (1.128-1) ... Removing libtest-pod-perl (1.52-1) ... Removing libtext-format-perl (0.61-1) ... Removing libtext-iconv-perl (1.7-5+b7) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing libtre5:amd64 (0.8.0-6) ... Removing libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... Removing libtype-tiny-xs-perl (0.014-1+b1) ... Removing libunicode-map-perl (0.112-12+b1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libunwind8:amd64 (1.2.1-10~deb10u1) ... Removing libutempter0:amd64 (1.1.6-3) ... Removing r-cran-httpuv (1.4.5.1+dfsg-1) ... Removing libuv1:amd64 (1.24.1-1+deb10u1) ... Removing libvariable-magic-perl (0.62-1+b1) ... Removing libwayland-server0:amd64 (1.16.0-1) ... Removing libwebpmux2:amd64 (0.5.2-1) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Removing libwebsocket-api-java (1.1-1+deb10u1) ... Removing tcpd (7.6.q-28) ... Removing libwrap0:amd64 (7.6.q-28) ... Removing libwsdl4j-java (1.6.3-4) ... Removing xauth (1:1.0.10-1) ... Removing libx11-protocol-perl (0.56-7) ... Removing libxcb-shape0:amd64 (1.13.1-2) ... Removing libxcb-xfixes0:amd64 (1.13.1-2) ... Removing libxdot4 (2.40.1-6+deb10u1) ... Removing libxerces2-java (2.12.0-1) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing libxml-commons-external-java (1.4.01-3) ... Removing libxml-sax-writer-perl (0.57-1) ... Removing libxml-filter-buffertext-perl (1.01-6) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-libxslt-perl (1.96-1+b1) ... Removing libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-1) ... Removing libxml-perl (0.08-3) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.09-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing python3-prov (1.5.2-1) ... Removing python3-lxml:amd64 (4.3.2-1+deb10u4) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxpp2-java (2.1.10-8) ... Removing libxpp3-java (1.1.4c-3) ... Removing libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing python3-yaml (3.13-2) ... Removing python-yaml (3.13-2) ... Removing libyaml-libyaml-perl (0.76+repack-1) ... Removing libyaml-perl (1.27-1) ... Removing libyaml-tiny-perl (1.73-1) ... Removing loki (2.4.7.4-8) ... Removing xfonts-encodings (1:1.0.4-2) ... dpkg: warning: while removing xfonts-encodings, directory '/usr/share/fonts/X11/encodings/large' not empty so not removed Removing lua-filesystem:amd64 (1.6.3-1) ... Removing lua-lpeg:amd64 (1.0.0-2) ... Removing lua-md5:amd64 (1.2+git+1+8d87fee-1.1) ... Removing lynx-common (2.8.9rel.1-3+deb10u1) ... Removing mafft (7.407-2) ... Removing mailutils-common (1:3.5-4) ... Removing make (4.2.1-1.2) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing maq (0.7.1-8) ... Removing mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing menu (2.1.47+b1) ... Removing mlv-smile (1.47-6) ... Removing muscle (1:3.8.1551-2) ... Removing mustang (3.2.3-3) ... Removing mysql-common (5.8+1.0.5) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing ncbi-epcr (2.3.12-1-7) ... Removing ncoils (2002-7) ... Removing node-normalize.css (8.0.1-3) ... Removing nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing openmpi-common (3.1.3-11) ... Removing pandoc-data (2.2.1-3) ... Removing paraclu (9-2) ... Removing parsinsert (1.04-4) ... Removing patch (2.7.6-3+deb10u1) ... Removing perl-doc (5.28.1-6+deb10u1) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing perm (0.4.0-4) ... Removing phylip (1:3.697+dfsg-1) ... Removing phyutility (2.7.3+dfsg-2) ... Removing plink (1.07+dfsg-2) ... Removing poa (2.0+20060928-7) ... Removing prank (0.0.170427+dfsg-2) ... Removing preview-latex-style (11.91-2) ... Removing primer3 (2.4.0-2) ... Removing probabel (0.5.0+dfsg-3) ... Removing probalign (1.4-8) ... Removing probcons (1.12-12) ... Removing proda (1.0-12) ... Removing prodigal (1:2.6.3-4) ... Removing proj-data (5.2.0-1) ... Removing psmisc (23.2-1+deb10u1) ... Removing publicsuffix (20220811.1734-0+deb10u1) ... Removing python-backports-shutil-get-terminal-size (1.0.0-5) ... E: namespace:121: cannot remove /usr/lib/python2.7/dist-packages/backports/__init__.py Removing python-backports.functools-lru-cache (1.5-3) ... E: namespace:121: cannot remove /usr/lib/python2.7/dist-packages/backports/__init__.py Removing python-biopython-doc (1.73+dfsg-1) ... Removing python-chardet (3.0.4-3) ... Removing python-cycler (0.10.0-1) ... Removing python-dateutil (2.7.3-3) ... Removing python-traitlets (4.3.2-1) ... Removing python-networkx (2.2-1) ... Removing python-decorator (4.3.0-1.1) ... Removing python-enum34 (1.1.6-2) ... Removing python-functools32 (3.2.3.2-3) ... Removing python-gmpy:amd64 (1.17-4) ... Removing python-gobject-2 (2.28.6-13+b1) ... Removing python-ipython-genutils (0.2.0-1) ... Removing python-kiwisolver (1.0.1-2+b1) ... Removing python-sympy (1.3-2) ... Removing python-mpmath (1.1.0-1) ... Removing python-olefile (0.46-1) ... Removing python-pickleshare (0.7.5-1) ... Removing python-pathlib2 (2.3.3-1) ... Removing python-pexpect (4.6.0-1) ... Removing python-pkg-resources (40.8.0-1) ... Removing python-ptyprocess (0.6.0-1) ... Removing python-pygments (2.3.1+dfsg-1+deb10u2) ... Removing python-pyparsing (2.2.0+dfsg1-2) ... Removing python-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Removing python-scandir (1.9.0-2) ... Removing python-simplegeneric (0.8.1-2) ... Removing python-six (1.12.0-1) ... Removing python-subprocess32 (3.5.3-1) ... Removing python-sympy-doc (1.3-2) ... Removing python-tz (2019.1-1) ... Removing python3-biomaj3-cli (3.1.10-1) ... Removing python3-biomaj3-core (3.0.15-1) ... Removing python3-bs4 (4.7.1-1) ... Removing python3-cachecontrol (0.11.7-1) ... Removing python3-requests (2.21.0-1) ... Removing python3-certifi (2018.8.24-1) ... Removing python3-chardet (3.0.4-3) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-networkx (2.2-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-elasticsearch (5.4.0-1) ... Removing python3-future (0.16.0-1) ... Removing python3-html5lib (1.0.1-1) ... Removing python3-idna (2.6-1) ... Removing python3-rdflib-jsonld (0.4.0-4) ... Removing python3-rdflib (4.2.2-2) ... Removing python3-isodate (0.6.0-1) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-lockfile (1:0.12.2-2) ... Removing python3-mistune (0.8.4-1) ... Removing python3-mypy-extensions (0.4.1-1) ... Removing python3-olefile (0.46-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-psutil (5.5.1-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Removing python3-ruamel.yaml (0.15.34-1+b1) ... Removing python3-shellescape (3.4.1-3) ... Removing python3-urllib3 (1.24.1-1) ... Removing python3-six (1.12.0-1) ... Removing python3-soupsieve (1.8+dfsg-1) ... Removing python3-typed-ast (1.3.1-1) ... Removing python3-typing-extensions (3.7.2-1) ... Removing python3-webencodings (0.5.1-1) ... Removing qtchooser (66-2) ... Removing qtcore4-l10n (4:4.8.7+dfsg-18+deb10u1) ... Removing r-bioc-limma (3.38.3+dfsg-1) ... Removing r-bioc-biocgenerics (0.28.0-2) ... Removing r-bioc-hilbertvis (1.40.0-1) ... Removing r-cran-rsqlite (2.1.1-2+b1) ... Removing r-cran-dbitest (1.5-2-2) ... Removing r-cran-blob (1.1.1-2) ... Removing r-cran-prettyunits (1.0.2-3) ... Removing r-cran-dplyr (0.7.8-1) ... Removing r-cran-desc (1.2.0-2) ... Removing r-cran-rprojroot (1.3-2-2) ... Removing r-cran-backports (1.1.3-1) ... Removing r-cran-base64enc (0.1-3-2) ... Removing r-cran-bindrcpp (0.2.2-2) ... Removing r-cran-bindr (0.1.1-2) ... Removing r-cran-bit64 (0.9-7-3) ... Removing r-cran-bit (1.1-14-1+b1) ... Removing r-cran-boot (1.3-20-2) ... Removing r-cran-class (7.3-15-1) ... Removing r-cran-tibble (2.0.1-1) ... Removing r-cran-pillar (1.3.1-1) ... Removing r-cran-cluster (2.0.7-1-1+b3) ... Removing r-cran-codetools (0.2-16-1) ... Removing r-cran-mockery (0.4.1.1+dfsg-1) ... Removing r-cran-testthat (2.0.1-1) ... Removing r-cran-data.table (1.12.0+dfsg-1) ... Removing r-cran-dbi (1.0.0-2) ... Removing r-cran-memoise (1.1.0-2) ... Removing r-cran-htmlwidgets (1.3+dfsg-1) ... Removing r-cran-htmltools (0.3.6-2) ... Removing r-cran-digest (0.6.18-1) ... Removing r-cran-evaluate (0.13-1) ... Removing r-cran-fansi (0.4.0-1) ... Removing r-cran-filehash (2.4-1-3) ... Removing r-cran-foreign (0.8.71-1) ... Removing r-cran-g.data (2.4-3) ... Removing r-cran-tidyselect (0.2.5-1) ... Removing r-cran-lubridate (1.7.4-2) ... Removing r-cran-stringr (1.4.0-1) ... Removing r-cran-glue (1.3.0-1) ... Removing r-cran-hms (0.4.2-2) ... Removing r-cran-jsonlite (1.6+dfsg-1) ... Removing r-cran-promises (1.0.1-2) ... Removing r-cran-later (0.7.5+dfsg-2) ... Removing r-cran-sp (1:1.3-1-1) ... Removing r-cran-mockr (0.1-2) ... Removing r-cran-lazyeval (0.2.1-3) ... Removing r-cran-purrr (0.3.0-1) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-markdown (0.9+dfsg-1) ... Removing r-cran-mass (7.3-51.1-1) ... Removing r-cran-mime (0.6-1) ... Removing r-cran-multicore (0.2-1+b2) ... Removing r-cran-nnet (7.3-12-2+b2) ... Removing r-cran-permute (0.9-4-3) ... Removing r-cran-pkgconfig (2.0.2-1) ... Removing r-cran-praise (1.0.0-3) ... Removing r-cran-pvclust (2.0-0-4) ... Removing r-cran-r6 (2.4.0-1) ... Removing r-cran-rlang (0.3.1-2) ... Removing r-cran-runit (0.4.32-2) ... Removing r-cran-sourcetools (0.1.7-2) ... Removing r-cran-spatial (7.3-11-2+b2) ... Removing r-cran-stringi (1.2.4-2) ... Removing r-cran-testit (0.9-1) ... Removing r-cran-tinytex (0.10-1) ... Removing r-cran-utf8 (1.1.4-1+b1) ... Removing r-cran-withr (2.1.2-3) ... Removing r-cran-xfun (0.4-1) ... Removing r-cran-xtable (1:1.8-3-1) ... Removing r-cran-yaml (2.2.0-1) ... Removing r-doc-html (3.5.2-1) ... Removing raxml (8.2.12+dfsg-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing sibsim4 (0.20-4) ... Removing sim4 (0.0.20121010-5) ... Removing snap (2013-11-29-9) ... Removing soapdenovo (1.05-5) ... Removing soapdenovo2 (241+dfsg-3) ... Removing t-coffee (12.00.7fb08c2-4) ... Removing tcl (8.6.9+1) ... Removing tcl8.6 (8.6.9+dfsg-2) ... Removing texlive-fonts-extra-doc (2018.20190227-2) ... Removing texlive-font-utils (2018.20190227-2) ... Removing texlive-fonts-extra (2018.20190227-2) ... Removing texlive-fonts-recommended (2018.20190227-2) ... Removing texlive-fonts-recommended-doc (2018.20190227-2) ... Removing texlive-generic-extra (2018.20190227-2) ... Removing texlive-latex-recommended (2018.20190227-2) ... Removing texlive-latex-base-doc (2018.20190227-2) ... Removing texlive-latex-recommended-doc (2018.20190227-2) ... Removing texlive-pictures-doc (2018.20190227-2) ... Removing tigr-glimmer (3.02b-2) ... Removing tree-puzzle-doc (5.2-11) ... Removing wise-data (2.4.1-21) ... Removing xbitmaps (1.1.1-2) ... Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing libgtk-3-0:amd64 (3.24.5-1) ... Removing libgtk2.0-0:amd64 (2.24.32-3) ... Removing adwaita-icon-theme (3.30.1-1) ... Removing libhtsjdk-java (2.18.2+dfsg-2) ... Removing libjaxb-java (2.3.0.1-8) ... Removing g++ (4:8.3.0-1) ... Removing default-jre (2:1.11-71) ... Removing openjdk-11-jre:amd64 (11.0.16+8-1~deb10u1) ... Removing default-jre-headless (2:1.11-71) ... Removing gcc (4:8.3.0-1) ... Removing libgtk-3-common (3.24.5-1) ... Removing librest-0.7-0:amd64 (0.8.1-1) ... Removing libsoup-gnome2.4-1:amd64 (2.64.2-2) ... Removing libsoup2.4-1:amd64 (2.64.2-2) ... Removing glib-networking:amd64 (2.58.0-2+deb10u2) ... Removing gsettings-desktop-schemas (3.28.1-1) ... Removing dconf-gsettings-backend:amd64 (0.30.1-2) ... Removing dconf-service (0.30.1-2) ... Removing dbus-user-session (1.12.20-0+deb10u1) ... Removing libpam-systemd:amd64 (241-7~deb10u8) ... Removing dbus (1.12.20-0+deb10u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing systemd-sysv (241-7~deb10u8) ... Removing systemd (241-7~deb10u8) ... Removing libcryptsetup12:amd64 (2:2.1.0-5+deb10u2) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing texlive-latex-base (2018.20190227-2) ... Removing fonts-lmodern (2.004.5-6) ... Removing g++-8 (8.3.0-6) ... Removing glib-networking-services (2.58.0-2+deb10u2) ... Removing glib-networking-common (2.58.0-2+deb10u2) ... Removing gtk-update-icon-cache (3.24.5-1) ... Removing hicolor-icon-theme (0.17-2) ... Removing imagemagick-6-common (8:6.9.10.23+dfsg-2.1+deb10u1) ... Removing libfastinfoset-java (1.2.12-3) ... Removing libstreambuffer-java (1.5.4-1) ... Removing libstax-ex-java (1.7.8-3) ... Removing libjaxb-api-java (2.3.1-1) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libalgorithm-diff-perl (1.19.03-2) ... Removing libcommons-jexl2-java (2.1.1-4) ... Removing libapparmor1:amd64 (2.13.2-10) ... Removing libargon2-1:amd64 (0~20171227-0.2) ... Removing libtxw2-java (2.3.0.1-8) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing libatk-bridge2.0-0:amd64 (2.30.0-5) ... Removing libatk1.0-0:amd64 (2.30.0-2) ... Removing libatk1.0-data (2.30.0-2) ... Removing r-cran-matrix (1.2-15-1) ... Removing libatspi2.0-0:amd64 (2.30.0-7) ... Removing texlive-plain-generic (2018.20190227-2) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmodule-runtime-perl (0.016-1) ... Removing libparams-classify-perl (0.015-1+b1) ... Removing libdevel-callchecker-perl (0.008-1) ... Removing libb-hooks-op-check-perl (0.22-1+b1) ... Removing r-cran-rcpp (1.0.0-1) ... Removing libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing libcairo-gobject2:amd64 (1.16.0-4+deb10u1) ... Removing librsvg2-common:amd64 (2.44.10-2.1+deb10u3) ... Removing librsvg2-2:amd64 (2.44.10-2.1+deb10u3) ... Removing libcap2:amd64 (1:2.25-2) ... Removing libcdt5 (2.40.1-6+deb10u1) ... Removing libcolord2:amd64 (1.4.3-4) ... Removing libcroco3:amd64 (0.6.12-3) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing libdconf1:amd64 (0.30.1-2) ... Removing libgl1:amd64 (1.1.0-1) ... Removing libglx0:amd64 (1.1.0-1) ... Removing libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing libdrm-amdgpu1:amd64 (2.4.97-1) ... Removing libdrm-intel1:amd64 (2.4.97-1) ... Removing libdrm-nouveau2:amd64 (2.4.97-1) ... Removing libdrm-radeon1:amd64 (2.4.97-1) ... Removing libdtd-parser-java (1.2~svn20110404-1) ... Removing libdynaloader-functions-perl (0.003-1) ... Removing libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libelf1:amd64 (0.176-1.1) ... Removing libxml-parser-perl (2.44-4) ... Removing libepoxy0:amd64 (1.5.3-0.1) ... Removing libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Removing libexpat1-dev:amd64 (2.2.6-2+deb10u4) ... Removing libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Removing libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Removing libgif7:amd64 (5.1.4-3) ... Removing libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Removing libglvnd0:amd64 (1.1.0-1) ... Removing libgtk2.0-common (2.24.32-3) ... Removing r-cran-littler (0.3.6-1) ... Removing libip4tc0:amd64 (1.8.2-4) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... dpkg: warning: while removing libjs-jquery, directory '/usr/share/javascript' not empty so not removed Removing libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Removing libjson-glib-1.0-0:amd64 (1.4.4-2) ... Removing libjson-glib-1.0-common (1.4.4-2) ... Removing libkmlbase1:amd64 (1.3.0-7) ... Removing libkmod2:amd64 (26-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libminizip1:amd64 (1.1-8+b1) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing libngs-java (2.9.3-1) ... Removing libngs-sdk-dev (2.9.3-1) ... Removing libngs-sdk2 (2.9.3-1) ... Removing texlive-base (2018.20190227-2) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libproxy1v5:amd64 (0.4.15-5+deb10u1) ... Removing python (2.7.16-1) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing libpython2.7:amd64 (2.7.16-2+deb10u1) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing python-minimal (2.7.16-1) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing libxsom-java (2.3.0.1-8) ... Removing librngom-java (2.3.0.1-8) ... Removing librelaxng-datatype-java (1.0+ds1-3) ... Removing libsensors5:amd64 (1:3.5.0-3) ... Removing libsensors-config (1:3.5.0-3) ... Removing liburiparser1:amd64 (0.9.1-1+deb10u1) ... Removing libwayland-cursor0:amd64 (1.16.0-1) ... Removing libwayland-client0:amd64 (1.16.0-1) ... Removing libwayland-egl1:amd64 (1.16.0-1) ... Removing libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb-dri2-0:amd64 (1.13.1-2) ... Removing libxcb-dri3-0:amd64 (1.13.1-2) ... Removing libxcb-glx0:amd64 (1.13.1-2) ... Removing libxcb-present0:amd64 (1.13.1-2) ... Removing libxcb-sync1:amd64 (1.13.1-2) ... Removing libxcomposite1:amd64 (1:0.4.4-2) ... Removing libxcursor1:amd64 (1:1.1.15-2) ... Removing libxdamage1:amd64 (1:1.1.4-3+b3) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxinerama1:amd64 (2:1.1.4-2) ... Removing libxkbcommon0:amd64 (0.8.2-1) ... Removing libxml-commons-resolver1.1-java (1.2-9) ... Removing shared-mime-info (1.10-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing python2-minimal (2.7.16-1) ... Removing r-cran-cli (1.0.1-1) ... Removing r-cran-crayon (1.3.4-4) ... Removing r-cran-lattice (0.20-38-1) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing xkb-data (2.26-2) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp (4:8.3.0-1) ... Removing cpp-8 (8.3.0-6) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing texlive-binaries (2018.20181218.49446-1) ... Removing libgs9:amd64 (9.27~dfsg-2+deb10u5) ... Removing libwoff1:amd64 (1.0.2-1) ... Removing libbrotli1:amd64 (1.0.7-2+deb10u1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libcupsimage2:amd64 (2.2.10-6+deb10u6) ... Removing libdrm2:amd64 (2.4.97-1) ... Removing libdrm-common (2.4.97-1) ... Removing libharfbuzz-icu0:amd64 (2.3.1-1) ... Removing libgs9-common (9.27~dfsg-2+deb10u5) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libijs-0.35:amd64 (0.35-14) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing libjbig2dec0:amd64 (0.16-1+deb10u1) ... Removing libptexenc1:amd64 (2018.20181218.49446-1) ... Removing libkpathsea6:amd64 (2018.20181218.49446-1) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Removing libpotrace0:amd64 (1.15-1) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libsynctex2:amd64 (2018.20181218.49446-1) ... Removing libteckit0:amd64 (2.5.8+ds2-5) ... Removing libtexlua52:amd64 (2018.20181218.49446-1) ... Removing libtexlua53:amd64 (2018.20181218.49446-1) ... Removing libtexluajit2:amd64 (2018.20181218.49446-1) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxxhash0:amd64 (0.6.5-2) ... Removing libzzip-0-13:amd64 (0.13.62-3.2+deb10u1) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing mime-support (3.62) ... Removing poppler-data (0.4.9-2) ... Removing r-cran-assertthat (0.2.0-2) ... Removing t1utils (1.41-3) ... Removing tex-common (6.11) ... Removing r-base-core (3.5.2-1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing tzdata (2021a-0+deb10u6) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libthai-data (0.1.28-2) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing ca-certificates-java (20190405) ... Removing dmsetup (2:1.02.155-3) ... Removing libdevmapper1.02.1:amd64 (2:1.02.155-3) ... Removing libcodemodel-java (2.6+jaxb2.3.0.1-8) ... Removing libwww-perl (6.36-2) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.04-1) ... Removing rake (12.3.1-3+deb10u1) ... Removing ruby (1:2.5.1) ... Removing ruby2.5 (2.5.5-3+deb10u4) ... Removing libruby2.5:amd64 (2.5.5-3+deb10u4) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.04-1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing libio-socket-ssl-perl (2.060-3) ... Removing tasksel-data (3.53) ... Removing odbcinst1debian2:amd64 (2.3.6-0.1) ... Removing odbcinst (2.3.6-0.1) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing libnet-http-perl (6.18-1) ... Removing libnet-ssleay-perl (1.85-2+deb10u1) ... Removing libreadline7:amd64 (7.0-5) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing netbase (5.6) ... Removing perl-openssl-defaults:amd64 (3) ... Removing readline-common (7.0-5) ... Removing ruby-did-you-mean (1.2.1-1) ... Removing ruby-minitest (5.11.3-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.2.8-1) ... Removing ruby-power-assert (1.1.1-1) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing rubygems-integration (1.11+deb10u1) ... Removing libistack-commons-java (3.0.6-3) ... Removing ant-optional (1.10.5-2) ... Removing ant (1.10.5-2) ... Removing openjdk-11-jre-headless:amd64 (11.0.16+8-1~deb10u1) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing java-common (0.71) ... Removing libactivation-java (1.2.0-2) ... Removing libsisu-ioc-java (2.3.0-11) ... Removing libsisu-guice-java (4.2.0-1) ... Removing libmaven-file-management-java (3.0.0-1) ... Removing libmaven-shared-io-java (3.0.0-3) ... Removing libmaven3-core-java (3.6.0-1) ... Removing libcommons-lang3-java (3.8-2) ... Removing libmaven-parent-java (31-2) ... Removing libargs4j-java (2.33-1) ... Removing libasound2:amd64 (1.1.8-1) ... Removing libasound2-data (1.1.8-1) ... Removing libsisu-plexus-java (0.3.3-3) ... Removing libsisu-inject-java (0.3.3-1) ... Removing libguice-java (4.2.1-1) ... Removing libcups2:amd64 (2.2.10-6+deb10u6) ... Removing libavahi-client3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common-data:amd64 (0.7-4+deb10u1) ... Removing libcdi-api-java (1.2-2) ... Removing libcommons-cli-java (1.4-1) ... Removing libwagon-http-java (3.3.1-2) ... Removing libhttpclient-java (4.5.7-1+deb10u1) ... Removing libcommons-codec-java (1.11-1) ... Removing libplexus-archiver-java (3.6.0-2) ... Removing libcommons-compress-java (1.18-2+deb10u1) ... Removing libplexus-io-java (3.1.1-1) ... Removing libmaven-shared-utils-java (3.3.0-1) ... Removing libcommons-io-java (2.6-2+deb10u1) ... Removing libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Removing libdom4j-java (2.1.1-2) ... Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libgeronimo-annotation-1.3-spec-java (1.0-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libguava-java (19.0-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libhttpcore-java (4.4.11-1) ... Removing libio-html-perl (1.001-1) ... Removing libjaxen-java (1.1.6-4) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjsoup-java (1.10.2-2) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing tasksel (3.53) ... Removing liblocale-gettext-perl (1.07-3+b4) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libmaven-resolver-java (1.3.1-1) ... Removing libnss3:amd64 (2:3.42.1-1+deb10u5) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libpcsclite1:amd64 (1.8.24-1) ... Removing libplexus-sec-dispatcher-java (1.4-4) ... Removing libplexus-cipher-java (1.7-3) ... Removing libplexus-classworlds-java (2.6.0-1) ... Removing libplexus-component-annotations-java (1.7.1-7) ... Removing libplexus-interpolation-java (1.25-1) ... Removing libwagon-provider-api-java (3.3.1-2) ... Removing libplexus-utils2-java (3.1.1-1) ... Removing libslf4j-java (1.7.25-3) ... Removing libsnappy-java (1.1.7.2-1) ... Removing libsnappy-jni (1.1.7.2-1) ... Removing libsnappy1v5:amd64 (1.1.7-1) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing libtimedate-perl (2.3000-2+deb10u1) ... Removing liburi-perl (1.76-1) ... Removing libxz-java (1.8-2) ... Removing ttf-bitstream-vera (1.10-8) ... dpkg: warning: while removing ttf-bitstream-vera, directory '/usr/share/fonts/truetype/ttf-bitstream-vera' not empty so not removed Removing ucf (3.0038+nmu1) ... Removing libaopalliance-java (20070526-6) ... Removing libcommons-logging-java (1.2-2) ... Removing libcommons-parent-java (43-1) ... Removing libapache-pom-java (18-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... updates of cacerts keystore disabled. done. Processing triggers for libc-bin (2.28-10+deb10u1) ... 33m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'remove', 'abyss', 'acedb-other', 'adwaita-icon-theme', 'aevol', 'alien-hunter', 'altree', 'amap-align', 'ampliconnoise', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2-bin', 'aragorn', 'arden', 'at-spi2-core', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autotools-dev', 'bamtools', 'bc', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates-java', 'cain', 'cain-examples', 'cain-solvers', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'concavity', 'conservation-code', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'cython', 'datamash', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-python', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dmsetup', 'dnaclust', 'dpkg-dev', 'dssp', 'dvipng', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fastdnaml', 'fastlink', 'fastqc', 'fasttree', 'fastx-toolkit', 'ffindex', 'file', 'fitgcp', 'flexbar', 'fontconfig', 'fontconfig-config', 'fonts-adf-accanthis', 'fonts-adf-berenis', 'fonts-adf-gillius', 'fonts-adf-universalis', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-glyphicons-halflings', 'fonts-go', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-core', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-noto-ui-core', 'fonts-oflb-asana-math', 'fonts-open-sans', 'fonts-roboto-hinted', 'fonts-roboto-unhinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 'freecontact', 'fsa', 'g++-', 'g++-6', 'g++-8', 'gasic', 'gatb-core', 'gawk', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gdal-data', 'genometools', 'genometools-common', 'gff2aplot', 'gff2ps', 'gfortran', 'gfortran-6', 'gfortran-8', 'ghostscript', 'giira', 'glam2', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'glpk-utils', 'gnome-icon-theme', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'grinder', 'gromacs', 'gromacs-data', 'gsettings-desktop-schemas', 'gsfonts', 'gtk-update-icon-cache', 'guile-2.0-libs:amd64', 'guile-2.2-libs:amd64', 'hhsuite', 'hhsuite-data', 'hicolor-icon-theme', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'icu-devtools', 'idba', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'infernal', 'ipython', 'isympy', 'isympy-common', 'java-common', 'java-wrappers', 'javascript-common', 'jellyfish', 'junit4', 'kalign', 'kissplice', 'krb5-locales', 'laptop-detect', 'last-align', 'libace-perl', 'libactivation-java', 'libaec0:amd64', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libanfo0', 'libann0', 'libaopalliance-java', 'libapache-dbi-perl', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libart-2.0-2:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbambamc0', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbarclay-java', 'libbcprov-java', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libboost-atomic1.67.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-filesystem1.67.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-iostreams1.67.0:amd64', 'libboost-mpi1.62.0', 'libboost-mpi1.67.0', 'libboost-program-options1.62.0:amd64', 'libboost-program-options1.67.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-regex1.67.0:amd64', 'libboost-serialization1.62.0:amd64', 'libboost-serialization1.67.0:amd64', 'libboost-system1.62.0:amd64', 'libboost-system1.67.0:amd64', 'libboost-thread1.62.0:amd64', 'libboost-thread1.67.0:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbytecode-java', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcassie1v5', 'libcc1-0:amd64', 'libcdi-api-java', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcglib-java', 'libcgraph6', 'libcharls2:amd64', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcodemodel-java', 'libcolamd2:amd64', 'libcolord2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-compress-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcroco3:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdevmapper1.02.1:amd64', 'libdigest-perl-md5-perl', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdom4j-java', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libegl1-mesa:amd64', 'libeigen3-dev', 'libel-api-java', 'libelf1:amd64', 'libelk0', 'libemail-date-format-perl', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'liberror-perl', 'libeval-closure-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreecontact0v5:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfuse2:amd64', 'libfyba0:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgatbcore2', 'libgatk-native-bindings-java', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgetopt-euclid-perl', 'libgetopt-simple-perl', 'libgflags2.2', 'libgflags2v5', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgkl-java', 'libgkl-jni', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgoogle-glog0v5', 'libgoogle-gson-java', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgromacs4:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libheif1:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu4j-java', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase23:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libintellij-annotations-java', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libip4tc0:amd64', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libisorelax-java', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjansson4:amd64', 'libjava-xmlbuilder-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjellyfish-2.0-2:amd64', 'libjemalloc1', 'libjetbrains-annotations-java', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjoptsimple-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c3:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsp-api-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblightcouch-java', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog4j1.2-java', 'liblog4j2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-3:amd64', 'libmagickwand-6.q16-6:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-charset-perl', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmng1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmongodb-java', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmysql-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libngs-sdk2', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnotify4:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libodbc1:amd64', 'libogdi3.2', 'libogg0:amd64', 'libole-storage-lite-perl', 'libopenexr22:amd64', 'libopenexr23:amd64', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-gzip-perl', 'libpicard-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpoppler64:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpotrace0:amd64', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libprotobuf10:amd64', 'libprotobuf17:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpth20:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2-dev:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libqt4-dbus:amd64', 'libqt4-xml:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsaxonhe-java', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libservlet-api-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoap-lite-perl', 'libsombok3:amd64', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlite3-0:amd64', 'libsquid1', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstax-ex-java', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstreambuffer-java', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuitesparseconfig5:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsynctex1:amd64', 'libsynctex2:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtxw2-java', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-linebreak-perl', 'libunicode-map-perl', 'libunistring0:amd64', 'libunwind8:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libutempter0:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux2:amd64', 'libwebpmux3:amd64', 'libwebsocket-api-java', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-165:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces-c3.2:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxxhash0:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'loki', 'lsb-base', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'm4', 'macs', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'mapsembler2', 'maq', 'mariadb-client-10.1', 'mariadb-client-10.3', 'mariadb-client-core-10.3', 'mariadb-common', 'med-config', 'med-tasks', 'melting', 'menu', 'mime-support', 'minia', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mrbayes', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-epcr', 'ncbi-tools-bin', 'ncoils', 'neobio', 'netbase', 'netpbm', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'paraclu', 'parallel', 'parsinsert', 'patch', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'perm', 'phylip', 'phyml', 'phyutility', 'picard-tools', 'pinentry-curses', 'pkg-config', 'plink', 'poa', 'poppler-data', 'prank', 'preview-latex-style', 'prime-phylo', 'primer3', 'probabel', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'proj-bin', 'proj-data', 'prosper', 'ps2eps', 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'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'qdbus', 'qt-at-spi:amd64', 'qtchooser', 'qtcore4-l10n', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-hilbertvis', 'r-bioc-limma', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreign', 'r-cran-g.data', 'r-cran-glue', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-permute', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-pvclust', 'r-cran-qtl', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vegan', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'raster3d', 'raxml', 'readline-common', 'readseq', 'rename', 'rnahybrid', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'seqan-apps', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sigma-align', 'sim4', 'smalt', 'snap', 'soapdenovo', 'soapdenovo2', 'squizz', 'sra-toolkit', 'ssake', 'staden-io-lib-utils', 'sysstat', 'systemd', 'systemd-sysv', 't-coffee', 't1utils', 'tabix', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-extra-links', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-plain-generic', 'texlive-pstricks', 'texlive-pstricks-doc', 'theseus', 'tigr-glimmer', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'tm-align', 'tophat', 'tree-puzzle', 'tree-puzzle-doc', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'unzip', 'vcftools', 'velvet', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xterm', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64', 'med-cloud'] 33m44.1s INFO: Running scripts post_remove 33m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_remove_exceptions'] 33m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_remove_exceptions'] 33m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--purge', 'abyss', 'acedb-other', 'adwaita-icon-theme', 'aevol', 'alien-hunter', 'altree', 'amap-align', 'ampliconnoise', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2-bin', 'aragorn', 'arden', 'at-spi2-core', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autotools-dev', 'bamtools', 'bc', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates-java', 'cain', 'cain-examples', 'cain-solvers', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'concavity', 'conservation-code', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'cython', 'datamash', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-python', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dmsetup', 'dnaclust', 'dpkg-dev', 'dssp', 'dvipng', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fastdnaml', 'fastlink', 'fastqc', 'fasttree', 'fastx-toolkit', 'ffindex', 'file', 'fitgcp', 'flexbar', 'fontconfig', 'fontconfig-config', 'fonts-adf-accanthis', 'fonts-adf-berenis', 'fonts-adf-gillius', 'fonts-adf-universalis', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-glyphicons-halflings', 'fonts-go', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-core', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-noto-ui-core', 'fonts-oflb-asana-math', 'fonts-open-sans', 'fonts-roboto-hinted', 'fonts-roboto-unhinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 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'kalign', 'kissplice', 'krb5-locales', 'laptop-detect', 'last-align', 'libace-perl', 'libactivation-java', 'libaec0:amd64', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libanfo0', 'libann0', 'libaopalliance-java', 'libapache-dbi-perl', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libart-2.0-2:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbambamc0', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbarclay-java', 'libbcprov-java', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libboost-atomic1.67.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-filesystem1.67.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-iostreams1.67.0:amd64', 'libboost-mpi1.62.0', 'libboost-mpi1.67.0', 'libboost-program-options1.62.0:amd64', 'libboost-program-options1.67.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-regex1.67.0:amd64', 'libboost-serialization1.62.0:amd64', 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'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-compress-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcroco3:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 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'libexception-class-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreecontact0v5:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfuse2:amd64', 'libfyba0:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgatbcore2', 'libgatk-native-bindings-java', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgetopt-euclid-perl', 'libgetopt-simple-perl', 'libgflags2.2', 'libgflags2v5', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgkl-java', 'libgkl-jni', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgoogle-glog0v5', 'libgoogle-gson-java', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgromacs4:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libheif1:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu4j-java', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase23:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libintellij-annotations-java', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libip4tc0:amd64', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libisorelax-java', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjansson4:amd64', 'libjava-xmlbuilder-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjellyfish-2.0-2:amd64', 'libjemalloc1', 'libjetbrains-annotations-java', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjoptsimple-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c3:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsp-api-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblightcouch-java', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog4j1.2-java', 'liblog4j2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-3:amd64', 'libmagickwand-6.q16-6:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-charset-perl', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmng1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmongodb-java', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmysql-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libngs-sdk2', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnotify4:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libodbc1:amd64', 'libogdi3.2', 'libogg0:amd64', 'libole-storage-lite-perl', 'libopenexr22:amd64', 'libopenexr23:amd64', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-gzip-perl', 'libpicard-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpoppler64:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpotrace0:amd64', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libprotobuf10:amd64', 'libprotobuf17:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpth20:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2-dev:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libqt4-dbus:amd64', 'libqt4-xml:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsaxonhe-java', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libservlet-api-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoap-lite-perl', 'libsombok3:amd64', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlite3-0:amd64', 'libsquid1', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstax-ex-java', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstreambuffer-java', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuitesparseconfig5:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsynctex1:amd64', 'libsynctex2:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtxw2-java', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-linebreak-perl', 'libunicode-map-perl', 'libunistring0:amd64', 'libunwind8:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libutempter0:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux2:amd64', 'libwebpmux3:amd64', 'libwebsocket-api-java', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-165:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces-c3.2:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxxhash0:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'loki', 'lsb-base', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'm4', 'macs', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'mapsembler2', 'maq', 'mariadb-client-10.1', 'mariadb-client-10.3', 'mariadb-client-core-10.3', 'mariadb-common', 'med-config', 'med-tasks', 'melting', 'menu', 'mime-support', 'minia', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mrbayes', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-epcr', 'ncbi-tools-bin', 'ncoils', 'neobio', 'netbase', 'netpbm', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'paraclu', 'parallel', 'parsinsert', 'patch', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'perm', 'phylip', 'phyml', 'phyutility', 'picard-tools', 'pinentry-curses', 'pkg-config', 'plink', 'poa', 'poppler-data', 'prank', 'preview-latex-style', 'prime-phylo', 'primer3', 'probabel', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'proj-bin', 'proj-data', 'prosper', 'ps2eps', 'psmisc', 'publicsuffix', 'pvm', 'pynast', 'python', 'python-backports-shutil-get-terminal-size', 'python-backports.functools-lru-cache', 'python-biopython', 'python-biopython-doc', 'python-cairo:amd64', 'python-chardet', 'python-cogent', 'python-configparser', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-dev', 'python-enum34', 'python-functools32', 'python-future', 'python-gdal', 'python-glade2', 'python-gmpy:amd64', 'python-gobject-2', 'python-gtk2', 'python-htseq', 'python-imaging', 'python-ipython', 'python-ipython-genutils', 'python-kiwisolver', 'python-matplotlib', 'python-matplotlib-data', 'python-matplotlib2-data', 'python-minimal', 'python-mpi4py', 'python-mpmath', 'python-networkx', 'python-numpy', 'python-olefile', 'python-pathlib2', 'python-pexpect', 'python-pickleshare', 'python-pil:amd64', 'python-pkg-resources', 'python-prompt-toolkit', 'python-ptyprocess', 'python-pyglet', 'python-pygments', 'python-pygraphviz', 'python-pyparsing', 'python-pysam', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-scandir', 'python-scipy', 'python-simplegeneric', 'python-six', 'python-subprocess32', 'python-sympy', 'python-sympy-doc', 'python-tk', 'python-traitlets', 'python-tz', 'python-wcwidth', 'python-wxgtk3.0', 'python-wxversion', 'python-yaml', 'python2', 'python2-dev', 'python2-minimal', 'python2.7', 'python2.7-dev', 'python2.7-minimal', 'python3', 'python3-biomaj3-cli', 'python3-biomaj3-core', 'python3-biopython', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-elasticsearch', 'python3-future', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'qdbus', 'qt-at-spi:amd64', 'qtchooser', 'qtcore4-l10n', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-hilbertvis', 'r-bioc-limma', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreign', 'r-cran-g.data', 'r-cran-glue', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-permute', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-pvclust', 'r-cran-qtl', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vegan', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'raster3d', 'raxml', 'readline-common', 'readseq', 'rename', 'rnahybrid', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'seqan-apps', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sigma-align', 'sim4', 'smalt', 'snap', 'soapdenovo', 'soapdenovo2', 'squizz', 'sra-toolkit', 'ssake', 'staden-io-lib-utils', 'sysstat', 'systemd', 'systemd-sysv', 't-coffee', 't1utils', 'tabix', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-extra-links', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-plain-generic', 'texlive-pstricks', 'texlive-pstricks-doc', 'theseus', 'tigr-glimmer', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'tm-align', 'tophat', 'tree-puzzle', 'tree-puzzle-doc', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'unzip', 'vcftools', 'velvet', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xterm', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64'] 33m48.6s DUMP: dpkg: warning: ignoring request to remove abyss which isn't installed dpkg: warning: ignoring request to remove acedb-other which isn't installed (Reading database ... 5557 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (3.30.1-1) ... dpkg: warning: ignoring request to remove aevol which isn't installed dpkg: warning: ignoring request to remove alien-hunter which isn't installed dpkg: warning: ignoring request to remove altree which isn't installed dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove ampliconnoise which isn't installed dpkg: warning: ignoring request to remove anfo which isn't installed dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-contrib which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove aragorn which isn't installed dpkg: warning: ignoring request to remove arden which isn't installed Purging configuration files for at-spi2-core (2.30.0-7) ... Purging configuration files for autoconf (2.69-11) ... dpkg: warning: ignoring request to remove autodock which isn't installed dpkg: warning: ignoring request to remove autodock-vina which isn't installed dpkg: warning: ignoring request to remove autogrid which isn't installed dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove bamtools which isn't installed Purging configuration files for bc (1.07.1-2+b1) ... dpkg: warning: ignoring request to remove bedtools which isn't installed Purging configuration files for beignet-opencl-icd:amd64 (1.3.2-6+b10) ... dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed Purging configuration files for biomaj (1.2.3-11) ... Warning, BioMAJ database for MySQL is not deleted by process removal. dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed dpkg: warning: ignoring request to remove biosquid which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed Purging configuration files for blends-common (0.7.2) ... dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed Purging configuration files for boxshade (3.3.1-12) ... Purging configuration files for bsdmainutils (11.1.2+b1) ... dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed Purging configuration files for ca-certificates-java (20190405) ... dpkg: warning: ignoring request to remove cain which isn't installed dpkg: warning: ignoring request to remove cain-examples which isn't installed dpkg: warning: ignoring request to remove cain-solvers which isn't installed dpkg: warning: ignoring request to remove cassiopee which isn't installed dpkg: warning: ignoring request to remove cd-hit which isn't installed dpkg: warning: ignoring request to remove cdbfasta which isn't installed dpkg: warning: ignoring request to remove cdbs which isn't installed Purging configuration files for circos (0.69.6+dfsg-2) ... dpkg: warning: ignoring request to remove circos-tools which isn't installed dpkg: warning: ignoring request to remove clearcut which isn't installed dpkg: warning: ignoring request to remove clonalframe which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-6) ... dpkg: warning: ignoring request to remove concavity which isn't installed dpkg: warning: ignoring request to remove conservation-code which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-6 which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed Purging configuration files for cron (3.0pl1-134+deb10u1) ... dpkg: warning: ignoring request to remove cwltool which isn't installed dpkg: warning: ignoring request to remove cython which isn't installed dpkg: warning: ignoring request to remove datamash which isn't installed Purging configuration files for dbus (1.12.20-0+deb10u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory Purging configuration files for dbus-user-session (1.12.20-0+deb10u1) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove default-mysql-client which isn't installed dpkg: warning: ignoring request to remove dh-python which isn't installed dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed Purging configuration files for dirmngr (2.2.12-1+deb10u2) ... dpkg: warning: ignoring request to remove discosnp which isn't installed dpkg: warning: ignoring request to remove disulfinder which isn't installed dpkg: warning: ignoring request to remove disulfinder-data which isn't installed dpkg: warning: ignoring request to remove dmidecode which isn't installed dpkg: warning: ignoring request to remove dmsetup which isn't installed dpkg: warning: ignoring request to remove dnaclust which isn't installed Purging configuration files for dpkg-dev (1.19.8) ... dpkg: warning: ignoring request to remove dssp which isn't installed dpkg: warning: ignoring request to remove dvipng which isn't installed dpkg: warning: ignoring request to remove embassy-domainatrix which isn't installed dpkg: warning: ignoring request to remove embassy-domalign which isn't installed dpkg: warning: ignoring request to remove embassy-domsearch which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed Purging configuration files for exim4 (4.92-8+deb10u6) ... Purging configuration files for exim4-base (4.92-8+deb10u6) ... Purging configuration files for exim4-config (4.92-8+deb10u6) ... dpkg-statoverride: warning: no override present Purging configuration files for exim4-daemon-light (4.92-8+deb10u6) ... dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove fakeroot which isn't installed Purging configuration files for fastdnaml (1.2.2-14) ... Purging configuration files for fastlink (4.1P-fix100+dfsg-2) ... Purging configuration files for fastqc (0.11.8+dfsg-2) ... dpkg: warning: ignoring request to remove fasttree which isn't installed dpkg: warning: ignoring request to remove fastx-toolkit which isn't installed dpkg: warning: ignoring request to remove ffindex which isn't installed dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove fitgcp which isn't installed dpkg: warning: ignoring request to remove flexbar which isn't installed Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... dpkg: warning: ignoring request to remove fonts-adf-accanthis which isn't installed dpkg: warning: ignoring request to remove fonts-adf-berenis which isn't installed dpkg: warning: ignoring request to remove fonts-adf-gillius which isn't installed dpkg: warning: ignoring request to remove fonts-adf-universalis which isn't installed dpkg: warning: ignoring request to remove fonts-cabin which isn't installed dpkg: warning: ignoring request to remove fonts-circos-symbols which isn't installed dpkg: warning: ignoring request to remove fonts-cmu which isn't installed dpkg: warning: ignoring request to remove fonts-comfortaa which isn't installed Purging configuration files for fonts-croscore (20181227-1) ... dpkg: warning: while removing fonts-croscore, directory '/usr/share/fonts/truetype/croscore' not empty so not removed Purging configuration files for fonts-crosextra-caladea (20130214-2) ... Purging configuration files for fonts-crosextra-carlito (20130920-1) ... dpkg: warning: while removing fonts-crosextra-carlito, directory '/usr/share/fonts/truetype/crosextra' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: while removing fonts-droid-fallback, directory '/usr/share/fonts/truetype/droid' not empty so not removed dpkg: warning: ignoring request to remove fonts-ebgaramond which isn't installed dpkg: warning: ignoring request to remove fonts-ebgaramond-extra which isn't installed dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-freefont-otf which isn't installed dpkg: warning: ignoring request to remove fonts-freefont-ttf which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-artemisia which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-complutum which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-didot which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-neohellenic which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-olga which isn't installed dpkg: warning: ignoring request to remove fonts-gfs-solomos which isn't installed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-go which isn't installed Purging configuration files for fonts-junicode (1.001-2) ... dpkg: warning: while removing fonts-junicode, directory '/usr/share/fonts/truetype/junicode' not empty so not removed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for fonts-linuxlibertine (5.3.0-4) ... dpkg: warning: while removing fonts-linuxlibertine, directory '/usr/share/fonts/opentype/linux-libertine' not empty so not removed Purging configuration files for fonts-lmodern (2.004.5-6) ... dpkg: warning: while removing fonts-lmodern, directory '/usr/share/texmf/fonts/opentype/public/lm-math' not empty so not removed dpkg: warning: while removing fonts-lmodern, directory '/usr/share/texmf/fonts/opentype/public/lm' not empty so not removed dpkg: warning: ignoring request to remove fonts-lobster which isn't installed dpkg: warning: ignoring request to remove fonts-lobstertwo which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed Purging configuration files for fonts-noto-core (20181227-1) ... Purging configuration files for fonts-noto-hinted (20181227-1) ... Purging configuration files for fonts-noto-mono (20181227-1) ... dpkg: warning: ignoring request to remove fonts-noto-ui-core which isn't installed dpkg: warning: ignoring request to remove fonts-oflb-asana-math which isn't installed dpkg: warning: ignoring request to remove fonts-open-sans which isn't installed dpkg: warning: ignoring request to remove fonts-roboto-hinted which isn't installed dpkg: warning: ignoring request to remove fonts-roboto-unhinted which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentium which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentium-basic which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentiumplus which isn't installed dpkg: warning: ignoring request to remove fonts-sil-gentiumplus-compact which isn't installed dpkg: warning: ignoring request to remove fonts-stix which isn't installed Purging configuration files for fonts-texgyre (20180621-3) ... dpkg: warning: while removing fonts-texgyre, directory '/usr/share/texmf/fonts/opentype/public/tex-gyre-math' not empty so not removed dpkg: warning: while removing fonts-texgyre, directory '/usr/share/texmf/fonts/opentype/public/tex-gyre' not empty so not removed dpkg: warning: ignoring request to remove freecontact which isn't installed dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-6 which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed dpkg: warning: ignoring request to remove gasic which isn't installed dpkg: warning: ignoring request to remove gatb-core which isn't installed Purging configuration files for gawk (1:4.2.1+dfsg-1) ... dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-6 which isn't installed dpkg: warning: ignoring request to remove gcc-7-base which isn't 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request to remove glib-networking-common which isn't installed dpkg: warning: ignoring request to remove glib-networking-services which isn't installed dpkg: warning: ignoring request to remove glpk-utils which isn't installed dpkg: warning: ignoring request to remove gnome-icon-theme which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.2.12-1+deb10u2) ... dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed dpkg: warning: ignoring request to remove gpg which isn't installed Purging configuration files for gpg-agent (2.2.12-1+deb10u2) ... dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpg-wks-server which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed Purging configuration files for graphviz (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove grinder which isn't installed dpkg: warning: ignoring request to remove gromacs which isn't installed dpkg: warning: ignoring request to remove gromacs-data which isn't installed dpkg: warning: ignoring request to remove gsettings-desktop-schemas which isn't installed Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... dpkg: warning: while removing gsfonts, directory '/usr/share/fonts/type1/gsfonts' not empty so not removed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove guile-2.0-libs which isn't installed dpkg: warning: ignoring request to remove guile-2.2-libs which isn't installed dpkg: warning: ignoring request to remove hhsuite which isn't installed dpkg: warning: ignoring request to remove hhsuite-data which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove hyphy-mpi which isn't installed Purging configuration files for ibverbs-providers:amd64 (22.1-1) ... dpkg: warning: ignoring request to remove icu-devtools which isn't installed dpkg: warning: ignoring request to remove idba which isn't installed Purging configuration files for imagemagick (8:6.9.10.23+dfsg-2.1+deb10u1) ... Purging configuration files for imagemagick-6-common (8:6.9.10.23+dfsg-2.1+deb10u1) ... dpkg: warning: ignoring request to remove imagemagick-6.q16 which isn't installed dpkg: warning: ignoring request to remove infernal which isn't installed dpkg: warning: ignoring request to remove ipython which isn't installed dpkg: warning: ignoring request to remove isympy which isn't installed dpkg: warning: ignoring request to remove isympy-common which isn't installed Purging configuration files for java-common (0.71) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove jellyfish which isn't installed dpkg: warning: ignoring request to remove junit4 which isn't installed dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove kissplice which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove laptop-detect which isn't installed dpkg: warning: ignoring request to remove last-align which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libactivation-java which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libaio1 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libamd2 which isn't installed dpkg: 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warning: ignoring request to remove libgtextutils0v5 which isn't installed Purging configuration files for libgtk-3-0:amd64 (3.24.5-1) ... dpkg: warning: ignoring request to remove libgtk-3-bin which isn't installed Purging configuration files for libgtk-3-common (3.24.5-1) ... Purging configuration files for libgtk2.0-0:amd64 (2.24.32-3) ... dpkg: warning: ignoring request to remove libgtk2.0-bin which isn't installed Purging configuration files for libgtk2.0-common (2.24.32-3) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libguice-java which isn't installed Purging configuration files for libgvc6 (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libhamcrest-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz-icu0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhawtjni-runtime-java which isn't installed dpkg: warning: 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installed dpkg: warning: ignoring request to remove libjgoodies-forms-java which isn't installed dpkg: warning: ignoring request to remove libjoptsimple-java which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-es5-shim which isn't installed dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-5) ... dpkg: warning: ignoring request to remove libjs-json which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-microplugin.js which isn't installed dpkg: warning: ignoring request to remove libjs-modernizr which isn't installed dpkg: warning: ignoring request to remove libjs-prettify which isn't installed dpkg: warning: ignoring request to remove libjs-sifter.js which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjsch-java which isn't installed dpkg: warning: ignoring request to remove libjson-c3 which isn't installed dpkg: warning: ignoring request to remove 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ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove liblightcouch-java which isn't installed dpkg: warning: ignoring request to remove liblist-allutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-someutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-utilsby-perl which isn't installed dpkg: warning: ignoring request to remove libllvm7 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed dpkg: warning: ignoring request to remove 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dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmime-types-perl which isn't installed dpkg: warning: ignoring request to remove libminizip1 which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove libmng1 which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmongodb-java which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 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libprotobuf10 which isn't installed dpkg: warning: ignoring request to remove libprotobuf17 which isn't installed dpkg: warning: ignoring request to remove libproxy1v5 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libptexenc1 which isn't installed dpkg: warning: ignoring request to remove libpth20 which isn't installed Purging configuration files for libpulse0:amd64 (12.2-4+deb10u1) ... dpkg: warning: ignoring request to remove libpvm3 which isn't installed dpkg: warning: ignoring request to remove libpython-dev which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2-dev which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2.7 which isn't installed dpkg: warning: ignoring request to remove libpython2.7-dev which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove libpython3.5-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull7 which isn't installed dpkg: warning: ignoring request to remove libqt4-dbus which isn't installed dpkg: warning: ignoring request to remove libqt4-xml which isn't installed dpkg: warning: 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libsaxonhe-java which isn't installed dpkg: warning: ignoring request to remove libscalar-list-utils-perl which isn't installed Purging configuration files for libsensors-config (1:3.5.0-3) ... Purging configuration files for libsensors4:amd64 (1:3.4.0-4) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libservlet-api-java which isn't installed dpkg: warning: ignoring request to remove libservlet3.1-java which isn't installed dpkg: warning: ignoring request to remove libset-intspan-perl which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsisu-guice-java which isn't installed dpkg: warning: ignoring request to remove libsisu-inject-java which isn't installed dpkg: warning: ignoring request to remove libsisu-ioc-java which isn't installed dpkg: warning: ignoring request to remove libsisu-plexus-java which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsndfile1 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsombok3 which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libsoup-gnome2.4-1 which isn't installed dpkg: warning: ignoring request to remove libsoup2.4-1 which isn't installed dpkg: warning: ignoring request to remove libspatialite7 which isn't installed dpkg: warning: ignoring request to remove libspecio-perl which isn't installed dpkg: warning: ignoring request to remove libspiffy-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove libsprng2 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libsquid1 which isn't installed dpkg: warning: ignoring request to remove libsquizz which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... dpkg: warning: ignoring request to remove libstaden-read11 which isn't installed dpkg: warning: ignoring request to remove libstaden-read13 which isn't installed dpkg: warning: ignoring request to remove libstatistics-basic-perl which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstax-ex-java which isn't installed dpkg: warning: ignoring request to remove libstdc++-6-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-8-dev which isn't installed dpkg: warning: ignoring request to remove libstreambuffer-java which isn't installed dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-quote-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: 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isn't installed dpkg: warning: ignoring request to remove libteckit0 which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-pod-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtexlua52 which isn't installed dpkg: warning: ignoring request to remove libtexlua53 which isn't installed dpkg: warning: ignoring request to remove libtexluajit2 which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: 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installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libtxc-dxtn-s2tc which isn't installed dpkg: warning: ignoring request to remove libtxw2-java which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libubsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libunbound8 which isn't installed dpkg: warning: ignoring request to remove libunicode-linebreak-perl which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libunwind8 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove liburiparser1 which isn't installed dpkg: warning: ignoring request to remove libutempter0 which isn't installed dpkg: warning: ignoring request to remove libuv1 which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed dpkg: warning: ignoring request to remove libvorbis0a which isn't installed dpkg: warning: ignoring request to remove libvorbisenc2 which isn't installed dpkg: warning: ignoring request to remove libwagon-http-java which isn't installed dpkg: warning: ignoring request to remove libwagon-provider-api-java which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1-mesa which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libwebsocket-api-java which isn't installed dpkg: warning: ignoring request to remove libwmf0.2-7 which isn't installed dpkg: warning: ignoring request to remove libwoff1 which isn't installed Purging configuration files for libwrap0:amd64 (7.6.q-28) ... dpkg: warning: ignoring request to remove libwsdl4j-java which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libwxbase3.0-0v5 which isn't installed dpkg: warning: ignoring request to remove libwxgtk3.0-0v5 which isn't installed dpkg: warning: ignoring request to remove libwxgtk3.0-gtk3-0v5 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libx265-165 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxdot4 which isn't installed dpkg: warning: ignoring request to remove libxerces-c3.1 which isn't installed dpkg: warning: ignoring request to remove libxerces-c3.2 which isn't installed dpkg: warning: ignoring request to remove libxerces2-java which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-9) ... dpkg: warning: while removing libxml-commons-resolver1.1-java, directory '/etc/xml' not empty so not removed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: 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isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxsom-java which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxv1 which isn't installed dpkg: warning: ignoring request to remove libxxf86dga1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libxxhash0 which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: 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Purging configuration files for lynx-common (2.8.9rel.1-3+deb10u1) ... dpkg: warning: ignoring request to remove m4 which isn't installed dpkg: warning: ignoring request to remove macs which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove mailutils which isn't installed dpkg: warning: ignoring request to remove mailutils-common which isn't installed dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed dpkg: warning: ignoring request to remove mapsembler2 which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-client-10.1 (10.1.45-0+deb9u1) ... Purging configuration files for mariadb-client-10.3 (1:10.3.34-0+deb10u1) ... dpkg: warning: ignoring request to remove mariadb-client-core-10.3 which isn't installed Purging configuration files for mariadb-common (1:10.3.34-0+deb10u1) ... Purging configuration files for med-config (3.3) ... dpkg: warning: ignoring request to remove med-tasks which isn't installed dpkg: warning: ignoring request to remove melting which isn't installed Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove minia which isn't installed dpkg: warning: ignoring request to remove mipe which isn't installed dpkg: warning: ignoring request to remove mira-assembler which isn't installed Purging configuration files for mira-rfam-12s-rrna (4.9.6-4) ... dpkg: warning: ignoring request to remove mlv-smile which isn't installed Purging configuration files for mothur (1.41.21-1) ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove mrbayes which isn't installed dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.0.5) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... dpkg: warning: ignoring request to remove ncbi-epcr which isn't installed dpkg: warning: ignoring request to remove ncbi-tools-bin which isn't installed dpkg: warning: ignoring request to remove ncoils which isn't installed dpkg: warning: ignoring request to remove neobio which isn't installed Purging configuration files for netbase (5.6) ... dpkg: warning: ignoring request to remove netpbm which isn't installed dpkg: warning: ignoring request to remove node-highlight.js which isn't installed dpkg: warning: ignoring request to remove node-normalize.css which isn't installed dpkg: warning: ignoring request to remove nodejs which isn't installed dpkg: warning: ignoring request to remove nodejs-doc which isn't installed Purging configuration files for notification-daemon (3.20.0-4) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for odbcinst (2.3.6-0.1) ... dpkg: warning: ignoring request to remove odbcinst1debian2 which isn't installed dpkg: warning: ignoring request to remove openjdk-11-jre which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.16+8-1~deb10u1) ... dpkg: warning: ignoring request to remove openjdk-8-jre which isn't installed Purging configuration files for openjdk-8-jre-headless:amd64 (8u252-b09-1~deb9u1) ... Purging configuration files for openmpi-bin (3.1.3-11) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:7.9p1-10+deb10u2) ... dpkg: warning: ignoring request to remove pandoc which isn't installed dpkg: warning: ignoring request to remove pandoc-data which isn't installed dpkg: warning: ignoring request to remove paraclu which isn't installed Purging configuration files for parallel (20161222-1.1) ... dpkg: warning: ignoring request to remove parsinsert which isn't installed dpkg: warning: ignoring request to remove patch which isn't installed dpkg: warning: ignoring request to remove pdb2pqr which isn't installed Purging configuration files for perl (5.28.1-6+deb10u1) ... Purging configuration files for perl-doc (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove perm which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove phyutility which isn't installed dpkg: warning: ignoring request to remove picard-tools which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for pkg-config (0.29-6) ... dpkg: warning: ignoring request to remove plink which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.9-2) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for preview-latex-style (11.91-2) ... dpkg: warning: ignoring request to remove prime-phylo which isn't installed Purging configuration files for primer3 (2.4.0-2) ... Purging configuration files for probabel (0.5.0+dfsg-3) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed Purging configuration files for procps (2:3.3.15-2) ... dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove prodigal which isn't installed dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed dpkg: warning: ignoring request to remove prosper which isn't installed dpkg: warning: ignoring request to remove ps2eps which isn't installed Purging configuration files for psmisc (23.2-1+deb10u1) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove pvm which isn't installed dpkg: warning: ignoring request to remove pynast which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-backports-shutil-get-terminal-size which isn't installed dpkg: warning: ignoring request to remove python-backports.functools-lru-cache which isn't installed dpkg: warning: ignoring request to remove python-biopython which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed dpkg: warning: ignoring request to remove python-cairo which isn't installed dpkg: warning: ignoring request to remove python-chardet which isn't installed dpkg: warning: ignoring request to remove python-cogent which isn't installed dpkg: warning: ignoring request to remove python-configparser which isn't installed dpkg: warning: ignoring request to remove python-cycler which isn't installed dpkg: warning: ignoring request to remove python-dateutil which isn't installed dpkg: warning: ignoring request to remove python-decorator which isn't installed dpkg: warning: ignoring request to remove python-dev which isn't installed dpkg: warning: ignoring request to remove python-enum34 which isn't installed dpkg: warning: ignoring request to remove python-functools32 which isn't installed dpkg: warning: ignoring request to remove python-future which isn't installed dpkg: warning: ignoring request to remove python-gdal which isn't installed dpkg: warning: ignoring request to remove python-glade2 which isn't installed dpkg: warning: ignoring request to remove python-gmpy which isn't installed dpkg: warning: ignoring request to remove python-gobject-2 which isn't installed dpkg: warning: ignoring request to remove python-gtk2 which isn't installed dpkg: warning: ignoring request to remove python-htseq which isn't installed dpkg: warning: ignoring request to remove python-imaging which isn't installed dpkg: warning: ignoring request to remove python-ipython which isn't installed dpkg: warning: ignoring request to remove python-ipython-genutils which isn't installed dpkg: warning: ignoring request to remove python-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python-matplotlib which isn't installed Purging configuration files for python-matplotlib-data (3.0.2-2) ... Purging configuration files for python-matplotlib2-data (2.2.3-6) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-mpi4py which isn't installed dpkg: warning: ignoring request to remove python-mpmath which isn't installed dpkg: warning: ignoring request to remove python-networkx which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python-olefile which isn't installed dpkg: warning: ignoring request to remove python-pathlib2 which isn't installed dpkg: warning: ignoring request to remove python-pexpect which isn't installed dpkg: warning: ignoring request to remove python-pickleshare which isn't installed dpkg: warning: ignoring request to remove python-pil which isn't installed dpkg: warning: ignoring request to remove python-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python-pyglet which isn't installed Purging configuration files for python-pygments (2.3.1+dfsg-1+deb10u2) ... dpkg: warning: ignoring request to remove python-pygraphviz which isn't installed dpkg: warning: ignoring request to remove python-pyparsing which isn't installed dpkg: warning: ignoring request to remove python-pysam which isn't installed dpkg: warning: ignoring request to remove python-renderpm which isn't installed dpkg: warning: ignoring request to remove python-reportlab which isn't installed dpkg: warning: ignoring request to remove python-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python-scandir which isn't installed dpkg: warning: ignoring request to remove python-scipy which isn't installed dpkg: warning: ignoring request to remove python-simplegeneric which isn't installed dpkg: warning: ignoring request to remove python-six which isn't installed dpkg: warning: ignoring request to remove python-subprocess32 which isn't installed Purging configuration files for python-sympy (1.3-2) ... dpkg: warning: ignoring request to remove python-sympy-doc which isn't installed dpkg: warning: ignoring request to remove python-tk which isn't installed dpkg: warning: ignoring request to remove python-traitlets which isn't installed dpkg: warning: ignoring request to remove python-tz which isn't installed dpkg: warning: ignoring request to remove python-wcwidth which isn't installed dpkg: warning: ignoring request to remove python-wxgtk3.0 which isn't installed dpkg: warning: ignoring request to remove python-wxversion which isn't installed dpkg: warning: ignoring request to remove python-yaml which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-dev which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed dpkg: warning: ignoring request to remove python2.7-dev which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-biomaj3-cli which isn't installed dpkg: warning: ignoring request to remove python3-biomaj3-core which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-elasticsearch which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-gdal which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lockfile which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mistune which isn't installed dpkg: warning: ignoring request to remove python3-mypy which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-rdflib-jsonld which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-shellescape which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-sparqlwrapper which isn't installed dpkg: warning: ignoring request to remove python3-typed-ast which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.5 which isn't installed Purging configuration files for python3.5-minimal (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove qdbus which isn't installed dpkg: warning: ignoring request to remove qt-at-spi which isn't installed dpkg: warning: ignoring request to remove qtchooser which isn't installed dpkg: warning: ignoring request to remove qtcore4-l10n which isn't installed Purging configuration files for r-base-core (3.5.2-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-hilbertvis which isn't installed dpkg: warning: ignoring request to remove r-bioc-limma which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-bindr which isn't installed dpkg: warning: ignoring request to remove r-cran-bindrcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dbitest which isn't installed dpkg: warning: ignoring request to remove r-cran-desc which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-filehash which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-g.data which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-lubridate which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-mockery which isn't installed dpkg: warning: ignoring request to remove r-cran-mockr which isn't installed dpkg: warning: ignoring request to remove r-cran-multicore which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-permute which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-pvclust which isn't installed dpkg: warning: ignoring request to remove r-cran-qtl which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed Purging configuration files for r-cran-rmarkdown (1.11+dfsg-1) ... dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-runit which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-sp which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-testit which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tikzdevice which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vegan which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml2 which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-other-mott-happy.hbrem which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raster3d which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove readseq which isn't installed dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove rnahybrid which isn't installed dpkg: warning: ignoring request to remove rtax which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove ruby2.5 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove seqan-apps which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.10-1) ... dpkg: warning: ignoring request to remove sibsim4 which isn't installed dpkg: warning: ignoring request to remove sigma-align which isn't installed dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove smalt which isn't installed dpkg: warning: ignoring request to remove snap which isn't installed dpkg: warning: ignoring request to remove soapdenovo which isn't installed dpkg: warning: ignoring request to remove soapdenovo2 which isn't installed dpkg: warning: ignoring request to remove squizz which isn't installed Purging configuration files for sra-toolkit (2.9.3+dfsg-1+b1) ... dpkg: warning: ignoring request to remove ssake which isn't installed dpkg: warning: ignoring request to remove staden-io-lib-utils which isn't installed Purging configuration files for sysstat (12.0.3-2) ... Purging configuration files for systemd (241-7~deb10u8) ... dpkg: warning: ignoring request to remove systemd-sysv which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove t1utils which isn't installed dpkg: warning: ignoring request to remove tabix which isn't installed Purging configuration files for tasksel (3.53) ... dpkg: warning: ignoring request to remove tasksel-data which isn't installed dpkg: warning: ignoring request to remove tcl which isn't installed Purging configuration files for tcl8.6 (8.6.9+dfsg-2) ... dpkg: warning: ignoring request to remove tcpd which isn't installed Purging configuration files for tex-common (6.11) ... Purging configuration files for tex-gyre (20180621-3) ... dpkg: warning: while removing tex-gyre, directory '/usr/share/fonts/X11/Type1' not empty so not removed Purging configuration files for texlive-base (2018.20190227-2) ... dpkg: warning: ignoring request to remove texlive-binaries which isn't installed Purging configuration files for texlive-extra-utils (2018.20190227-2) ... Purging configuration files for texlive-font-utils (2018.20190227-2) ... Purging configuration files for texlive-fonts-extra (2018.20190227-2) ... Purging configuration files for texlive-fonts-extra-doc (2018.20190227-2) ... Purging configuration files for texlive-fonts-extra-links (2018.20190227-2) ... Purging configuration files for texlive-fonts-recommended (2018.20190227-2) ... dpkg: warning: while removing texlive-fonts-recommended, directory '/usr/share/fonts/type1/texlive-fonts-recommended' not empty so not removed Purging configuration files for texlive-fonts-recommended-doc (2018.20190227-2) ... dpkg: warning: ignoring request to remove texlive-generic-extra which isn't installed dpkg: warning: ignoring request to remove texlive-generic-recommended which isn't installed Purging configuration files for texlive-latex-base (2018.20190227-2) ... Purging configuration files for texlive-latex-base-doc (2018.20190227-2) ... Purging configuration files for texlive-latex-extra (2018.20190227-2) ... Purging configuration files for texlive-latex-extra-doc (2018.20190227-2) ... Purging configuration files for texlive-latex-recommended (2018.20190227-2) ... Purging configuration files for texlive-latex-recommended-doc (2018.20190227-2) ... Purging configuration files for texlive-pictures (2018.20190227-2) ... Purging configuration files for texlive-pictures-doc (2018.20190227-2) ... Purging configuration files for texlive-plain-generic (2018.20190227-2) ... Purging configuration files for texlive-pstricks (2018.20190227-2) ... Purging configuration files for texlive-pstricks-doc (2018.20190227-2) ... dpkg: warning: ignoring request to remove theseus which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed Purging configuration files for tipa (2:1.3-20) ... dpkg: warning: ignoring request to remove tk which isn't installed Purging configuration files for tk8.6 (8.6.9-2) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed dpkg: warning: ignoring request to remove tophat which isn't installed Purging configuration files for tree-puzzle (5.2-11) ... dpkg: warning: ignoring request to remove tree-puzzle-doc which isn't installed dpkg: warning: ignoring request to remove ttf-adf-accanthis which isn't installed dpkg: warning: ignoring request to remove ttf-adf-gillius which isn't installed dpkg: warning: ignoring request to remove ttf-adf-universalis which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... dpkg: warning: ignoring request to remove vcftools which isn't installed dpkg: warning: ignoring request to remove velvet which isn't installed dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+19) ... Purging configuration files for x11-utils (7.7+4) ... Purging configuration files for x11-xserver-utils (7.7+8) ... dpkg: warning: ignoring request to remove xauth which isn't installed dpkg: warning: ignoring request to remove xbitmaps which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... dpkg: warning: while removing xfonts-utils, directory '/usr/share/fonts/X11/util' not empty so not removed dpkg: warning: ignoring request to remove xkb-data which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... Purging configuration files for xterm (344-1+deb10u2) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zalign which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 33m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--purge', 'abyss', 'acedb-other', 'adwaita-icon-theme', 'aevol', 'alien-hunter', 'altree', 'amap-align', 'ampliconnoise', 'anfo', 'ant', 'ant-contrib', 'ant-optional', 'apache2-bin', 'aragorn', 'arden', 'at-spi2-core', 'autoconf', 'autodock', 'autodock-vina', 'autogrid', 'automake', 'autotools-dev', 'bamtools', 'bc', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'biomaj', 'bioperl', 'bioperl-run', 'biosquid', 'blast2', 'blends-common', 'blt', 'bowtie', 'bowtie2', 'boxshade', 'bsdmainutils', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'ca-certificates-java', 'cain', 'cain-examples', 'cain-solvers', 'cassiopee', 'cd-hit', 'cdbfasta', 'cdbs', 'circos', 'circos-tools', 'clearcut', 'clonalframe', 'clustalo', 'clustalw', 'concavity', 'conservation-code', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'cython', 'datamash', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'default-mysql-client', 'dh-python', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'discosnp', 'disulfinder', 'disulfinder-data', 'dmidecode', 'dmsetup', 'dnaclust', 'dpkg-dev', 'dssp', 'dvipng', 'embassy-domainatrix', 'embassy-domalign', 'embassy-domsearch', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fastdnaml', 'fastlink', 'fastqc', 'fasttree', 'fastx-toolkit', 'ffindex', 'file', 'fitgcp', 'flexbar', 'fontconfig', 'fontconfig-config', 'fonts-adf-accanthis', 'fonts-adf-berenis', 'fonts-adf-gillius', 'fonts-adf-universalis', 'fonts-cabin', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-comfortaa', 'fonts-croscore', 'fonts-crosextra-caladea', 'fonts-crosextra-carlito', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-ebgaramond', 'fonts-ebgaramond-extra', 'fonts-font-awesome', 'fonts-freefont-otf', 'fonts-freefont-ttf', 'fonts-gfs-artemisia', 'fonts-gfs-complutum', 'fonts-gfs-didot', 'fonts-gfs-neohellenic', 'fonts-gfs-olga', 'fonts-gfs-solomos', 'fonts-glyphicons-halflings', 'fonts-go', 'fonts-junicode', 'fonts-lato', 'fonts-liberation', 'fonts-linuxlibertine', 'fonts-lmodern', 'fonts-lobster', 'fonts-lobstertwo', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-core', 'fonts-noto-hinted', 'fonts-noto-mono', 'fonts-noto-ui-core', 'fonts-oflb-asana-math', 'fonts-open-sans', 'fonts-roboto-hinted', 'fonts-roboto-unhinted', 'fonts-sil-gentium', 'fonts-sil-gentium-basic', 'fonts-sil-gentiumplus', 'fonts-sil-gentiumplus-compact', 'fonts-stix', 'fonts-texgyre', 'freecontact', 'fsa', 'g++', 'g++-6', 'g++-8', 'gasic', 'gatb-core', 'gawk', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gdal-data', 'genometools', 'genometools-common', 'gff2aplot', 'gff2ps', 'gfortran', 'gfortran-6', 'gfortran-8', 'ghostscript', 'giira', 'glam2', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'glpk-utils', 'gnome-icon-theme', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'grinder', 'gromacs', 'gromacs-data', 'gsettings-desktop-schemas', 'gsfonts', 'gtk-update-icon-cache', 'guile-2.0-libs:amd64', 'guile-2.2-libs:amd64', 'hhsuite', 'hhsuite-data', 'hicolor-icon-theme', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'icu-devtools', 'idba', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'infernal', 'ipython', 'isympy', 'isympy-common', 'java-common', 'java-wrappers', 'javascript-common', 'jellyfish', 'junit4', 'kalign', 'kissplice', 'krb5-locales', 'laptop-detect', 'last-align', 'libace-perl', 'libactivation-java', 'libaec0:amd64', 'libaio1:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libamd2:amd64', 'libanfo0', 'libann0', 'libaopalliance-java', 'libapache-dbi-perl', 'libapache-pom-java', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libart-2.0-2:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libasm-java', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libasyncns0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatlas3-base:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libaudio2:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libaxis-java', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbambamc0', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbarclay-java', 'libbcprov-java', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbiojava-java', 'libbiojava1.7-java', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libboost-atomic1.67.0:amd64', 'libboost-filesystem1.62.0:amd64', 'libboost-filesystem1.67.0:amd64', 'libboost-iostreams1.62.0:amd64', 'libboost-iostreams1.67.0:amd64', 'libboost-mpi1.62.0', 'libboost-mpi1.67.0', 'libboost-program-options1.62.0:amd64', 'libboost-program-options1.67.0:amd64', 'libboost-regex1.62.0:amd64', 'libboost-regex1.67.0:amd64', 'libboost-serialization1.62.0:amd64', 'libboost-serialization1.67.0:amd64', 'libboost-system1.62.0:amd64', 'libboost-system1.67.0:amd64', 'libboost-thread1.62.0:amd64', 'libboost-thread1.67.0:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbytecode-java', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcapture-tiny-perl', 'libcarp-always-perl', 'libcarp-clan-perl', 'libcassie1v5', 'libcc1-0:amd64', 'libcdi-api-java', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcglib-java', 'libcgraph6', 'libcharls2:amd64', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcodemodel-java', 'libcolamd2:amd64', 'libcolord2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-compress-java', 'libcommons-dbcp-java', 'libcommons-discovery-java', 'libcommons-httpclient-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-net-java', 'libcommons-parent-java', 'libcommons-pool-java', 'libconfig-general-perl', 'libconfig-inifiles-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcroco3:amd64', 'libcrypt-rc4-perl', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-dumper-simple-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdevmapper1.02.1:amd64', 'libdigest-perl-md5-perl', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdom4j-java', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libegl1-mesa:amd64', 'libeigen3-dev', 'libel-api-java', 'libelf1:amd64', 'libelk0', 'libemail-date-format-perl', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'liberror-perl', 'libeval-closure-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfcgi-perl', 'libffindex0', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-homedir-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libflac8:amd64', 'libfont-afm-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreecontact0v5:amd64', 'libfreemarker-java', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfuse2:amd64', 'libfyba0:amd64', 'libg20', 'libgail-common:amd64', 'libgail18:amd64', 'libgatbcore2', 'libgatk-native-bindings-java', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-graph-perl', 'libgd-perl', 'libgd-text-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgetopt-euclid-perl', 'libgetopt-simple-perl', 'libgflags2.2', 'libgflags2v5', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgkl-java', 'libgkl-jni', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglade2-0:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglpk-java:amd64', 'libglpk40:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgoogle-glog0v5', 'libgoogle-gson-java', 'libgraph-perl', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgromacs2', 'libgromacs4:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtextutils0v5:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-bin', 'libgtk2.0-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2', 'libhamcrest-java', 'libharfbuzz-icu0:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libheif1:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhsqldb-java', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu4j-java', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase12:amd64', 'libilmbase23:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libintellij-annotations-java', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libip4tc0:amd64', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libisorelax-java', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjansson4:amd64', 'libjava-xmlbuilder-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjcode-pm-perl', 'libjcommon-java', 'libjdom1-java', 'libjellyfish-2.0-2:amd64', 'libjemalloc1', 'libjetbrains-annotations-java', 'libjets3t-java', 'libjgoodies-common-java', 'libjgoodies-forms-java', 'libjoptsimple-java', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjsch-java', 'libjson-c3:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsp-api-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libjzlib-java', 'libk5crypto3:amd64', 'libkdf5-2', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblightcouch-java', 'liblist-allutils-perl', 'liblist-moreutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblog4j1.2-java', 'liblog4j2-java', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-3:amd64', 'libmagickcore-6.q16-3-extra:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-3:amd64', 'libmagickwand-6.q16-6:amd64', 'libmail-java', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-bezier-perl', 'libmath-derivative-perl', 'libmath-random-mt-perl', 'libmath-round-perl', 'libmath-spline-perl', 'libmath-tamuanova-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-charset-perl', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmng1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmongodb-java', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libmsv-java', 'libmysql-java', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncbi-vdb2', 'libncbi-wvdb2', 'libncbi6:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libngs-sdk2', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnotify4:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-format-perl', 'libodbc1:amd64', 'libogdi3.2', 'libogg0:amd64', 'libole-storage-lite-perl', 'libopenexr22:amd64', 'libopenexr23:amd64', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'liboro-java', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libperl4-corelibs-perl', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-gzip-perl', 'libpicard-java', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpod-coverage-perl', 'libpoppler64:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpotrace0:amd64', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libprotobuf10:amd64', 'libprotobuf17:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpth20:amd64', 'libpulse0:amd64', 'libpvm3:amd64', 'libpython-dev:amd64', 'libpython-stdlib:amd64', 'libpython2-dev:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-dev:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libqt4-dbus:amd64', 'libqt4-xml:amd64', 'libqtcore4:amd64', 'libqtdbus4:amd64', 'libqtgui4:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline5:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-common-perl', 'libregexp-java', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librole-tiny-perl', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsaxonhe-java', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libservlet-api-java', 'libservlet3.1-java', 'libset-intspan-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoap-lite-perl', 'libsombok3:amd64', 'libsort-naturally-perl', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsprng2', 'libsqlite3-0:amd64', 'libsquid1', 'libsquizz', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-basic-perl', 'libstatistics-descriptive-perl', 'libstax-ex-java', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstreambuffer-java', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuitesparseconfig4:amd64', 'libsuitesparseconfig5:amd64', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsynctex1:amd64', 'libsynctex2:amd64', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtamuanova-0.2', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-pod-perl', 'libtest-warn-perl', 'libtexlua52:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-diff-perl', 'libtext-format-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtre5:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtxw2-java', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-linebreak-perl', 'libunicode-map-perl', 'libunistring0:amd64', 'libunwind8:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libutempter0:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux2:amd64', 'libwebpmux3:amd64', 'libwebsocket-api-java', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwrap0:amd64', 'libwsdl4j-java', 'libwww-perl', 'libwww-robotrules-perl', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-165:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.1:amd64', 'libxerces-c3.2:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxom-java', 'libxpm4:amd64', 'libxpp2-java', 'libxpp3-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxxhash0:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyaml-tiny-perl', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'loki', 'lsb-base', 'lua-filesystem:amd64', 'lua-lpeg:amd64', 'lua-md5:amd64', 'lynx', 'lynx-common', 'm4', 'macs', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'mapsembler2', 'maq', 'mariadb-client-10.1', 'mariadb-client-10.3', 'mariadb-client-core-10.3', 'mariadb-common', 'med-config', 'med-tasks', 'melting', 'menu', 'mime-support', 'minia', 'mipe', 'mira-assembler', 'mira-rfam-12s-rrna', 'mlv-smile', 'mothur', 'mpi-default-bin', 'mrbayes', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-epcr', 'ncbi-tools-bin', 'ncoils', 'neobio', 'netbase', 'netpbm', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'paraclu', 'parallel', 'parsinsert', 'patch', 'pdb2pqr', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'perm', 'phylip', 'phyml', 'phyutility', 'picard-tools', 'pinentry-curses', 'pkg-config', 'plink', 'poa', 'poppler-data', 'prank', 'preview-latex-style', 'prime-phylo', 'primer3', 'probabel', 'probalign', 'probcons', 'procps', 'proda', 'prodigal', 'proj-bin', 'proj-data', 'prosper', 'ps2eps', 'psmisc', 'publicsuffix', 'pvm', 'pynast', 'python', 'python-backports-shutil-get-terminal-size', 'python-backports.functools-lru-cache', 'python-biopython', 'python-biopython-doc', 'python-cairo:amd64', 'python-chardet', 'python-cogent', 'python-configparser', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-dev', 'python-enum34', 'python-functools32', 'python-future', 'python-gdal', 'python-glade2', 'python-gmpy:amd64', 'python-gobject-2', 'python-gtk2', 'python-htseq', 'python-imaging', 'python-ipython', 'python-ipython-genutils', 'python-kiwisolver', 'python-matplotlib', 'python-matplotlib-data', 'python-matplotlib2-data', 'python-minimal', 'python-mpi4py', 'python-mpmath', 'python-networkx', 'python-numpy', 'python-olefile', 'python-pathlib2', 'python-pexpect', 'python-pickleshare', 'python-pil:amd64', 'python-pkg-resources', 'python-prompt-toolkit', 'python-ptyprocess', 'python-pyglet', 'python-pygments', 'python-pygraphviz', 'python-pyparsing', 'python-pysam', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-scandir', 'python-scipy', 'python-simplegeneric', 'python-six', 'python-subprocess32', 'python-sympy', 'python-sympy-doc', 'python-tk', 'python-traitlets', 'python-tz', 'python-wcwidth', 'python-wxgtk3.0', 'python-wxversion', 'python-yaml', 'python2', 'python2-dev', 'python2-minimal', 'python2.7', 'python2.7-dev', 'python2.7-minimal', 'python3', 'python3-biomaj3-cli', 'python3-biomaj3-core', 'python3-biopython', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-elasticsearch', 'python3-future', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'qdbus', 'qt-at-spi:amd64', 'qtchooser', 'qtcore4-l10n', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-hilbertvis', 'r-bioc-limma', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreign', 'r-cran-g.data', 'r-cran-glue', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-permute', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-pvclust', 'r-cran-qtl', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vegan', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-other-mott-happy.hbrem', 'r-recommended', 'rake', 'raster3d', 'raxml', 'readline-common', 'readseq', 'rename', 'rnahybrid', 'rtax', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'seqan-apps', 'sgml-base', 'shared-mime-info', 'sibsim4', 'sigma-align', 'sim4', 'smalt', 'snap', 'soapdenovo', 'soapdenovo2', 'squizz', 'sra-toolkit', 'ssake', 'staden-io-lib-utils', 'sysstat', 'systemd', 'systemd-sysv', 't-coffee', 't1utils', 'tabix', 'tasksel', 'tasksel-data', 'tcl', 'tcl8.6', 'tcpd', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-binaries', 'texlive-extra-utils', 'texlive-font-utils', 'texlive-fonts-extra', 'texlive-fonts-extra-doc', 'texlive-fonts-extra-links', 'texlive-fonts-recommended', 'texlive-fonts-recommended-doc', 'texlive-generic-extra', 'texlive-generic-recommended', 'texlive-latex-base', 'texlive-latex-base-doc', 'texlive-latex-extra', 'texlive-latex-extra-doc', 'texlive-latex-recommended', 'texlive-latex-recommended-doc', 'texlive-pictures', 'texlive-pictures-doc', 'texlive-plain-generic', 'texlive-pstricks', 'texlive-pstricks-doc', 'theseus', 'tigr-glimmer', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'tm-align', 'tophat', 'tree-puzzle', 'tree-puzzle-doc', 'ttf-adf-accanthis', 'ttf-adf-gillius', 'ttf-adf-universalis', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'unzip', 'vcftools', 'velvet', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xbitmaps', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xterm', 'xz-utils', 'zalign', 'zip', 'zlib1g-dev:amd64'] 33m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--purge', 'med-cloud'] 33m48.6s DUMP: dpkg: warning: ignoring request to remove med-cloud which isn't installed 33m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--purge', 'med-cloud'] 33m48.6s INFO: Running scripts post_purge 33m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_purge_exceptions'] 33m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_purge_exceptions'] 33m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--purge', '--pending'] 33m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--purge', '--pending'] 33m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--remove', '--pending'] 33m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg', '--remove', '--pending'] 33m48.7s INFO: Running scripts post_test 33m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_test_exceptions'] 33m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'tmp/scripts/post_test_exceptions'] 33m48.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 33m49.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 33m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg-divert', '--list'] 33m49.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 33m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'dpkg-divert', '--list'] 33m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'clean'] 33m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y', 'apt-get', 'clean'] 33m49.8s DEBUG: Recording chroot state 33m50.9s INFO: Warning: Package purging left files on system: /etc/ca-certificates.conf.dpkg-old not owned /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: tex-gyre, texlive-fonts-recommended, fonts-roboto-hinted, fonts-roboto-unhinted, fonts-open-sans, fonts-noto-core, fonts-noto-ui-core, fonts-mathjax, lmodern, xfonts-utils, xfonts-encodings, fonts-go, fonts-adf-universalis, fonts-adf-gillius, fonts-adf-berenis, fonts-adf-accanthis, fonts-glyphicons-halflings, gsfonts, fonts-sil-gentiumplus, fonts-sil-gentium-basic, fonts-sil-gentium, fonts-noto-mono, fonts-lyx, fonts-linuxlibertine, fonts-junicode, fonts-freefont-ttf, fonts-freefont-otf, fonts-font-awesome, fonts-crosextra-caladea, fonts-croscore, fonts-comfortaa, fonts-liberation, poppler-data, fonts-lato, fonts-stix, fonts-sil-gentiumplus-compact, fonts-oflb-asana-math, fonts-lobstertwo, fonts-lobster, fonts-gfs-solomos, fonts-gfs-olga, fonts-gfs-neohellenic, fonts-gfs-didot, fonts-gfs-complutum, fonts-gfs-artemisia, fonts-ebgaramond-extra, fonts-ebgaramond, fonts-dejavu-extra, fonts-crosextra-carlito, fonts-cabin, fonts-cmu, fonts-droid-fallback, ttf-bitstream-vera, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/X11/ owned by: tex-gyre, lmodern, xfonts-utils, xfonts-encodings /usr/share/fonts/X11/.uuid not owned /usr/share/fonts/X11/Type1/ owned by: tex-gyre, lmodern /usr/share/fonts/X11/Type1/.uuid not owned /usr/share/fonts/X11/encodings/ owned by: xfonts-encodings /usr/share/fonts/X11/encodings/.uuid not owned /usr/share/fonts/X11/encodings/large/ owned by: xfonts-encodings /usr/share/fonts/X11/encodings/large/.uuid not owned /usr/share/fonts/X11/util/ owned by: xfonts-utils /usr/share/fonts/X11/util/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/eot/ owned by: fonts-font-awesome /usr/share/fonts/eot/.uuid not owned /usr/share/fonts/eot/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/eot/font-awesome/.uuid not owned /usr/share/fonts/fonts-go/ owned by: fonts-go /usr/share/fonts/fonts-go/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-linuxlibertine, fonts-freefont-otf, fonts-font-awesome, fonts-stix, fonts-sil-gentiumplus-compact, fonts-lobstertwo, fonts-lobster, fonts-ebgaramond-extra, fonts-ebgaramond, fonts-cabin /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/cabin/ owned by: fonts-cabin /usr/share/fonts/opentype/cabin/.uuid not owned /usr/share/fonts/opentype/ebgaramond/ owned by: fonts-ebgaramond-extra, fonts-ebgaramond /usr/share/fonts/opentype/ebgaramond/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/opentype/freefont/ owned by: fonts-freefont-otf /usr/share/fonts/opentype/freefont/.uuid not owned /usr/share/fonts/opentype/gentiumplus/ owned by: fonts-sil-gentiumplus-compact /usr/share/fonts/opentype/gentiumplus/.uuid not owned /usr/share/fonts/opentype/linux-libertine/ owned by: fonts-linuxlibertine /usr/share/fonts/opentype/linux-libertine/.uuid not owned /usr/share/fonts/opentype/lobster/ owned by: fonts-lobster /usr/share/fonts/opentype/lobster/.uuid not owned /usr/share/fonts/opentype/lobstertwo/ owned by: fonts-lobstertwo /usr/share/fonts/opentype/lobstertwo/.uuid not owned /usr/share/fonts/opentype/stix-word/ owned by: fonts-stix /usr/share/fonts/opentype/stix-word/.uuid not owned /usr/share/fonts/opentype/stix/ owned by: fonts-stix /usr/share/fonts/opentype/stix/.uuid not owned /usr/share/fonts/svg/ owned by: fonts-font-awesome /usr/share/fonts/svg/.uuid not owned /usr/share/fonts/svg/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/svg/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-roboto-hinted, fonts-roboto-unhinted, fonts-open-sans, fonts-noto-core, fonts-noto-ui-core, fonts-adf-universalis, fonts-adf-gillius, fonts-adf-berenis, fonts-adf-accanthis, fonts-glyphicons-halflings, fonts-sil-gentiumplus, fonts-sil-gentium-basic, fonts-sil-gentium, fonts-noto-mono, fonts-lyx, fonts-junicode, fonts-freefont-ttf, fonts-font-awesome, fonts-crosextra-caladea, fonts-croscore, fonts-comfortaa, fonts-liberation, fonts-lato, fonts-oflb-asana-math, fonts-gfs-solomos, fonts-gfs-olga, fonts-gfs-neohellenic, fonts-gfs-didot, fonts-gfs-complutum, fonts-gfs-artemisia, fonts-ebgaramond-extra, fonts-dejavu-extra, fonts-crosextra-carlito, fonts-cmu, fonts-droid-fallback, ttf-bitstream-vera, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/adf/ owned by: fonts-adf-universalis, fonts-adf-gillius, fonts-adf-berenis, fonts-adf-accanthis /usr/share/fonts/truetype/adf/.uuid not owned /usr/share/fonts/truetype/artemisia/ owned by: fonts-gfs-artemisia /usr/share/fonts/truetype/artemisia/.uuid not owned /usr/share/fonts/truetype/asana-math/ owned by: fonts-oflb-asana-math /usr/share/fonts/truetype/asana-math/.uuid not owned /usr/share/fonts/truetype/cmu/ owned by: fonts-cmu /usr/share/fonts/truetype/cmu/.uuid not owned /usr/share/fonts/truetype/comfortaa/ owned by: fonts-comfortaa /usr/share/fonts/truetype/comfortaa/.uuid not owned /usr/share/fonts/truetype/complutum/ owned by: fonts-gfs-complutum /usr/share/fonts/truetype/complutum/.uuid not owned /usr/share/fonts/truetype/croscore/ owned by: fonts-croscore /usr/share/fonts/truetype/croscore/.uuid not owned /usr/share/fonts/truetype/crosextra/ owned by: fonts-crosextra-caladea, fonts-crosextra-carlito /usr/share/fonts/truetype/crosextra/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-extra, fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/didot/ owned by: fonts-gfs-didot /usr/share/fonts/truetype/didot/.uuid not owned /usr/share/fonts/truetype/droid/ owned by: fonts-droid-fallback /usr/share/fonts/truetype/droid/.uuid not owned /usr/share/fonts/truetype/ebgaramond/ owned by: fonts-ebgaramond-extra /usr/share/fonts/truetype/ebgaramond/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/freefont/ owned by: fonts-freefont-ttf /usr/share/fonts/truetype/freefont/.uuid not owned /usr/share/fonts/truetype/gentium-basic/ owned by: fonts-sil-gentium-basic /usr/share/fonts/truetype/gentium-basic/.uuid not owned /usr/share/fonts/truetype/gentium/ owned by: fonts-sil-gentium /usr/share/fonts/truetype/gentium/.uuid not owned /usr/share/fonts/truetype/gentiumplus/ owned by: fonts-sil-gentiumplus /usr/share/fonts/truetype/gentiumplus/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/junicode/ owned by: fonts-junicode /usr/share/fonts/truetype/junicode/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/truetype/neohellenic/ owned by: fonts-gfs-neohellenic /usr/share/fonts/truetype/neohellenic/.uuid not owned /usr/share/fonts/truetype/noto/ owned by: fonts-noto-core, fonts-noto-ui-core, fonts-noto-mono /usr/share/fonts/truetype/noto/.uuid not owned /usr/share/fonts/truetype/olga/ owned by: fonts-gfs-olga /usr/share/fonts/truetype/olga/.uuid not owned /usr/share/fonts/truetype/open-sans/ owned by: fonts-open-sans /usr/share/fonts/truetype/open-sans/.uuid not owned /usr/share/fonts/truetype/roboto/ owned by: fonts-roboto-hinted, fonts-roboto-unhinted /usr/share/fonts/truetype/roboto/.uuid not owned /usr/share/fonts/truetype/roboto/hinted/ owned by: fonts-roboto-hinted /usr/share/fonts/truetype/roboto/hinted/.uuid not owned /usr/share/fonts/truetype/roboto/unhinted/ owned by: fonts-roboto-unhinted /usr/share/fonts/truetype/roboto/unhinted/.uuid not owned /usr/share/fonts/truetype/roboto/unhinted/RobotoTTF/ owned by: fonts-roboto-unhinted /usr/share/fonts/truetype/roboto/unhinted/RobotoTTF/.uuid not owned /usr/share/fonts/truetype/solomos/ owned by: fonts-gfs-solomos /usr/share/fonts/truetype/solomos/.uuid not owned /usr/share/fonts/truetype/ttf-bitstream-vera/ owned by: ttf-bitstream-vera /usr/share/fonts/truetype/ttf-bitstream-vera/.uuid not owned /usr/share/fonts/type1/ owned by: texlive-fonts-recommended, gsfonts /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/gsfonts/ owned by: gsfonts /usr/share/fonts/type1/gsfonts/.uuid not owned /usr/share/fonts/type1/texlive-fonts-recommended/ owned by: texlive-fonts-recommended /usr/share/fonts/type1/texlive-fonts-recommended/.uuid not owned /usr/share/fonts/woff/ owned by: fonts-font-awesome, fonts-ebgaramond-extra /usr/share/fonts/woff/.uuid not owned /usr/share/fonts/woff/ebgaramond/ owned by: fonts-ebgaramond-extra /usr/share/fonts/woff/ebgaramond/.uuid not owned /usr/share/fonts/woff/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/woff/font-awesome/.uuid not owned /usr/share/javascript/ owned by: libjs-twitter-bootstrap-datepicker, libjs-sphinxdoc, libjs-prettify, libjs-modernizr, libjs-json, libjs-jquery-selectize.js, libjs-microplugin.js, libjs-sifter.js, libjs-jquery-datatables, libjs-highlight.js, libjs-es5-shim, libjs-d3, libjs-mathjax, fonts-mathjax, libjs-bootstrap, node-normalize.css, libjs-underscore, libjs-jquery-ui, libjs-jquery, fonts-font-awesome, javascript-common /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned /usr/share/texmf/ owned by: tex-gyre, texlive-base, lmodern, fonts-lmodern, r-base-core, preview-latex-style, fonts-texgyre, tex-common, tipa /usr/share/texmf/fonts/ owned by: tex-gyre, lmodern, fonts-lmodern, fonts-texgyre, tipa /usr/share/texmf/fonts/opentype/ owned by: fonts-lmodern, fonts-texgyre /usr/share/texmf/fonts/opentype/public/ owned by: fonts-lmodern, fonts-texgyre /usr/share/texmf/fonts/opentype/public/lm-math/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/lm-math/.uuid not owned /usr/share/texmf/fonts/opentype/public/lm/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/lm/.uuid not owned /usr/share/texmf/fonts/opentype/public/tex-gyre-math/ owned by: fonts-texgyre /usr/share/texmf/fonts/opentype/public/tex-gyre-math/.uuid not owned /usr/share/texmf/fonts/opentype/public/tex-gyre/ owned by: fonts-texgyre /usr/share/texmf/fonts/opentype/public/tex-gyre/.uuid not owned 33m51.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/shm'] 33m51.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/shm'] 33m51.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/console'] 33m51.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/console'] 33m51.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/ptmx'] 33m51.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/ptmx'] 33m51.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/pts'] 33m51.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/dev/pts'] 33m51.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/proc'] 33m51.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y/proc'] 33m51.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 33m51.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1rznhz_y'] 33m51.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1rznhz_y 33m51.6s INFO: PASS: Upgrading between Debian distributions. 33m51.6s INFO: PASS: All tests. 33m51.6s INFO: piuparts run ends. ret=0 End: 2023-03-12 21:07:57 GMT