Start: 2022-11-26 12:37:36 GMT [stretch] Package: roary Version: 3.8.0+dfsg-1 Installed-Size: 634 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree Description: high speed stand alone pan genome pipeline Homepage: http://sanger-pathogens.github.io/Roary/ Description-md5: 6d457fd706202fc2ef292eacf7b46029 Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing, use::comparing Section: science Priority: optional Filename: pool/main/r/roary/roary_3.8.0+dfsg-1_all.deb Size: 170134 MD5sum: d2b5bd8c3cf60d6fabc08169c52a4d40 SHA256: 062eece678b4556ee0de3961c4789d1b51e2e860d582d72e19aedd6f8beef3db [buster] Package: roary Version: 3.12.0+dfsg-2 Installed-Size: 659 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libarray-utils-perl, libdigest-md5-file-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree Description: high speed stand alone pan genome pipeline Homepage: http://sanger-pathogens.github.io/Roary/ Description-md5: 6d457fd706202fc2ef292eacf7b46029 Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing, use::comparing Section: science Priority: optional Filename: pool/main/r/roary/roary_3.12.0+dfsg-2_all.deb Size: 175808 MD5sum: 3bae32a1e6cd3c3b9e0afbbaebdcd928 SHA256: 0a1009cd6258701da1316076dff44da1fb5bcc98986234beaf80796b33413620 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt roary=3.12.0+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat --apt roary=3.12.0+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpz_cil040 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpz_cil040 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz_cil040', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz_cil040', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz_cil040/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz_cil040/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpz_cil040/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'update'] 0m2.9s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s INFO: Running scripts post_setup 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_dummy_users'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster-rcmd/reference-chroot-metadata.dat 0m4.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_test_root_password'] 0m4.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_test_root_password'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'show', '--no-all-versions', 'roary'] 0m4.9s DUMP: Package: roary Version: 3.8.0+dfsg-1 Installed-Size: 634 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree Description-en: high speed stand alone pan genome pipeline Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes. Description-md5: 6d457fd706202fc2ef292eacf7b46029 Homepage: http://sanger-pathogens.github.io/Roary/ Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing, use::comparing Section: science Priority: optional Filename: pool/main/r/roary/roary_3.8.0+dfsg-1_all.deb Size: 170134 MD5sum: d2b5bd8c3cf60d6fabc08169c52a4d40 SHA256: 062eece678b4556ee0de3961c4789d1b51e2e860d582d72e19aedd6f8beef3db 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'show', '--no-all-versions', 'roary'] 0m4.9s INFO: apt-cache knows about the following packages: roary 0m4.9s INFO: Running scripts pre_install 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy'] 0m5.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy', 'roary'] 0m5.1s DUMP: roary: Installed: (none) Candidate: 3.8.0+dfsg-1 Version table: 3.8.0+dfsg-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy', 'roary'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'install', 'roary'] 1m33.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: amap-align apache2-bin autotools-dev bedtools beignet-opencl-icd binutils bioperl bioperl-run blast2 blends-common bowtie build-essential bwa bzip2 bzip2-doc ca-certificates cd-hit cdbs clustalo clustalw cpp cpp-6 cron dbus dialign dialign-tx dialign-tx-data dirmngr dpkg-dev emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate fakeroot fasttree file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fsa g++ g++-6 gawk gcc gcc-6 gfortran gfortran-6 ghostscript gnupg gnupg-agent gnupg-l10n graphviz gsfonts guile-2.0-libs hmmer hyphy-common hyphy-mpi icu-devtools infernal javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libann0 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libarray-utils-perl libasan3 libassuan0 libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblas-common libblas-dev libblas3 libbsd-resource-perl libbsd0 libbz2-dev libc-dev-bin libc6-dev libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-overloadinfo-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdist-checkconflicts-perl libdivsufsort3 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libemail-date-format-perl libencode-locale-perl libenv-path-perl liberror-perl libeval-closure-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-find-rule-perl libfile-grep-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-slurper-perl libfile-which-perl libfindbin-libs-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgc1c2 libgcc-6-dev libgd-perl libgd3 libgdbm3 libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraph-perl libgraph-readwrite-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsasl7 libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu-dev libicu57 libidn11 libidn2-0 libijs-0.35 libimport-into-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-shareable-perl libipc-sharelite-perl libipc-system-simple-perl libisl15 libitm1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libkyotocabinet16v5 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl libllvm3.9 liblocale-gettext-perl liblog-dispatch-perl liblog-log4perl-perl liblsan0 libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmail-sendmail-perl libmailtools-perl libmailutils5 libmariadbclient18 libmath-derivative-perl libmath-spline-perl libmime-lite-perl libmime-tools-perl libmime-types-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoo-perl libmoose-perl libmpc3 libmpfr4 libmpx2 libmro-compat-perl libnamespace-clean-perl libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnpth0 libntlm0 libnuma1 libnumber-compare-perl libole-storage-lite-perl libopenjp2-7 libopenmpi2 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libparse-yapp-perl libpathplan4 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libperlio-utf8-strict-perl libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpostscript-perl libpq5 libprocps6 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7 libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libreadline-dev libreadline7 librole-tiny-perl librtmp1 libruby2.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libscalar-list-utils-perl libsensors4 libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstatistics-descriptive-perl libstdc++-6-dev libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsys-hostname-long-perl libtask-weaken-perl libtasn1-6 libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-glob-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunistring0 liburi-perl libvariable-magic-perl libwebp6 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl linux-libc-dev littler lsb-base lynx lynx-common mafft mailutils mailutils-common make manpages manpages-dev maq mcl med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl parallel patch perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk phylip phyml pinentry-curses pkg-config poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python python-minimal python2.7 python2.7-minimal r-base-core r-base-dev r-cran-assertthat r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-crayon r-cran-dichromat r-cran-digest r-cran-foreign r-cran-ggplot2 r-cran-gtable r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rpart r-cran-scales r-cran-spatial r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-doc-html r-recommended rake raxml readline-common rename ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools sgml-base shared-mime-info sim4 sysstat t-coffee tcpd tigr-glimmer tm-align tzdata ucf unzip wise wise-data x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom filo binutils-doc groff-base gmap paml blends-doc bowtie-examples devscripts clustalx seaview cpp-doc gcc-6-locales anacron logrotate checksecurity default-dbus-session-bus | dbus-session-bus dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring emboss-doc emboss-test embassy eximon4 exim4-doc-html | exim4-doc-info spf-tools-perl swaks fonts-noto g++-multilib g++-6-multilib gcc-6-doc libstdc++6-6-dbg gawk-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev ghostscript-x parcimonie xloadimage scdaemon graphviz-doc hmmer-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl liblapack-doc-man liblapack-doc glibc-doc cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gnutls-bin gpm krb5-doc krb5-user libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins icu-doc libdb-file-lock-perl libfile-readbackwards-perl liblcms2-utils libdbd-csv-perl liblog-dispatch-filerotate-perl librrds-perl libcrypt-ssleay-perl liblzma-doc libmojolicious-perl ncurses-doc uuid libscalar-number-perl pciutils readline-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libnet-jabber-perl libstdc++-6-doc libbareword-filehandles-perl libindirect-perl libmultidimensional-perl tcl8.6 tk8.6 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl mailutils-mh mailutils-doc make-doc man-browser mcl-doc menu-l10n gksu | kde-runtime | ktsuss mustang-testdata ed diffutils-doc libterm-readline-gnu-perl | libterm-readline-perl-perl phylip-doc pinentry-doc poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python-doc python-tk python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html debhelper texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-testthat r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-knitr r-cran-getopt r-cran-abind r-cran-foreach r-cran-doparallel r-cran-iterators r-cran-inline r-cran-htmltools r-cran-htmlwidgets ri ruby-dev bundler sgml-base-doc isag boxshade t-coffee-examples pymol rasmol wise-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin The following NEW packages will be installed: amap-align apache2-bin autotools-dev bedtools beignet-opencl-icd binutils bioperl bioperl-run blast2 blends-common bowtie build-essential bwa bzip2 bzip2-doc ca-certificates cd-hit cdbs clustalo clustalw cpp cpp-6 cron dbus dialign dialign-tx dialign-tx-data dirmngr dpkg-dev emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate fakeroot fasttree file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fsa g++ g++-6 gawk gcc gcc-6 gfortran gfortran-6 ghostscript gnupg gnupg-agent gnupg-l10n graphviz gsfonts guile-2.0-libs hmmer hyphy-common hyphy-mpi icu-devtools infernal javascript-common kalign krb5-locales libace-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libann0 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libarray-utils-perl libasan3 libassuan0 libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblas-common libblas-dev libblas3 libbsd-resource-perl libbsd0 libbz2-dev libc-dev-bin libc6-dev libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-overloadinfo-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdist-checkconflicts-perl libdivsufsort3 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libemail-date-format-perl libencode-locale-perl libenv-path-perl liberror-perl libeval-closure-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfakeroot libfcgi-perl libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-find-rule-perl libfile-grep-perl libfile-listing-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-slurper-perl libfile-which-perl libfindbin-libs-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgc1c2 libgcc-6-dev libgd-perl libgd3 libgdbm3 libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraph-perl libgraph-readwrite-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgsasl7 libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu-dev libicu57 libidn11 libidn2-0 libijs-0.35 libimport-into-perl libio-all-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-shareable-perl libipc-sharelite-perl libipc-system-simple-perl libisl15 libitm1 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libkyotocabinet16v5 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl libllvm3.9 liblocale-gettext-perl liblog-dispatch-perl liblog-log4perl-perl liblsan0 libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmail-sendmail-perl libmailtools-perl libmailutils5 libmariadbclient18 libmath-derivative-perl libmath-spline-perl libmime-lite-perl libmime-tools-perl libmime-types-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoo-perl libmoose-perl libmpc3 libmpfr4 libmpx2 libmro-compat-perl libnamespace-clean-perl libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnpth0 libntlm0 libnuma1 libnumber-compare-perl libole-storage-lite-perl libopenjp2-7 libopenmpi2 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-recdescent-perl libparse-yapp-perl libpathplan4 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libperlio-utf8-strict-perl libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpostscript-perl libpq5 libprocps6 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7 libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libreadline-dev libreadline7 librole-tiny-perl librtmp1 libruby2.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libscalar-list-utils-perl libsensors4 libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspiffy-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstatistics-descriptive-perl libstdc++-6-dev libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsys-hostname-long-perl libtask-weaken-perl libtasn1-6 libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-glob-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libunicode-map-perl libunistring0 liburi-perl libvariable-magic-perl libwebp6 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl linux-libc-dev littler lsb-base lynx lynx-common mafft mailutils mailutils-common make manpages manpages-dev maq mcl med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl parallel patch perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk phylip phyml pinentry-curses pkg-config poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python python-minimal python2.7 python2.7-minimal r-base-core r-base-dev r-cran-assertthat r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-crayon r-cran-dichromat r-cran-digest r-cran-foreign r-cran-ggplot2 r-cran-gtable r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rpart r-cran-scales r-cran-spatial r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-doc-html r-recommended rake raxml readline-common rename roary ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools sgml-base shared-mime-info sim4 sysstat t-coffee tcpd tigr-glimmer tm-align tzdata ucf unzip wise wise-data x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 634 newly installed, 0 to remove and 0 not upgraded. Need to get 398 MB of archives. After this operation, 1761 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 cron amd64 3.0pl1-128+deb9u1 [95.4 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 fonts-liberation all 1:1.07.4-2 [827 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 fonts-lato all 2.0-1 [2684 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libpcrecpp0v5 amd64 2:8.39-3 [151 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 poppler-data all 0.4.7-8 [1451 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libassuan0 amd64 2.4.3-2 [42.5 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libnpth0 amd64 1.3-1 [14.6 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libgc1c2 amd64 1:7.4.2-8 [208 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libwrap0 amd64 7.6.q-26 [58.2 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 manpages all 4.10-2 [1222 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 amap-align amd64 2.2-6 [129 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 libapr1 amd64 1.5.2-5 [96.6 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 apache2-bin amd64 2.4.25-3+deb9u9 [1185 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 binutils amd64 2.28-5 [3770 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 bioperl all 1.7.1-2 [422 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 bioperl-run all 1.7.1-3 [44.2 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:112 http://deb.debian.org/debian stretch/main amd64 blast2 all 1:2.6.0-1 [9084 B] Get:113 http://deb.debian.org/debian stretch/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 blends-common all 0.6.96 [23.3 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libisl15 amd64 0.18-1 [564 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libmpc3 amd64 1.0.3-1+b2 [39.9 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 cpp amd64 4:6.3.0-4 [18.7 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 libcc1-0 amd64 6.3.0-18+deb9u1 [30.6 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:125 http://deb.debian.org/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 gcc amd64 4:6.3.0-4 [5196 B] Get:135 http://deb.debian.org/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 g++ amd64 4:6.3.0-4 [1546 B] Get:138 http://deb.debian.org/debian stretch/main amd64 make amd64 4.1-9.1 [302 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 libdpkg-perl all 1.18.25 [1287 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 patch amd64 2.7.5-1+deb9u2 [112 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 dpkg-dev all 1.18.25 [1595 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 build-essential amd64 12.3 [7346 B] Get:143 http://deb.debian.org/debian stretch/main amd64 bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 bzip2-doc all 1.0.6-8.1 [307 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 cd-hit amd64 4.6.6-2 [852 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 cdbs all 0.4.150 [82.6 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 clustalo amd64 1.2.4-1 [263 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 clustalw amd64 2.1+lgpl-5 [286 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 dialign amd64 2.2.1-8 [138 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 dialign-tx-data all 1.0.2-9 [869 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 dialign-tx amd64 1.0.2-9 [85.7 kB] Get:155 http://deb.debian.org/debian stretch/main amd64 dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:158 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 mysql-common all 5.8+1.0.2 [5608 B] Get:164 http://deb.debian.org/debian stretch/main amd64 libmariadbclient18 amd64 10.1.45-0+deb9u1 [785 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libpq5 amd64 9.6.17-0+deb9u1 [137 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:168 http://deb.debian.org/debian stretch/main amd64 emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 exim4-config all 4.89-2+deb9u7 [377 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 exim4-base amd64 4.89-2+deb9u7 [1094 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 exim4-daemon-light amd64 4.89-2+deb9u7 [542 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 exim4 all 4.89-2+deb9u7 [7860 B] Get:173 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 exonerate amd64 2.4.0-2 [1476 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 fonts-noto-mono all 20161116-1 [79.2 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 mummer amd64 3.23+dfsg-2 [809 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 fsa amd64 1.15.9+dfsg-3 [753 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libgfortran-6-dev amd64 6.3.0-18+deb9u1 [299 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 gfortran-6 amd64 6.3.0-18+deb9u1 [6916 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 gfortran amd64 4:6.3.0-4 [1356 B] Get:184 http://deb.debian.org/debian stretch/main amd64 libavahi-common-data amd64 0.6.32-2 [118 kB] Get:185 http://deb.debian.org/debian stretch/main amd64 libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 libcupsimage2 amd64 2.2.1-8+deb9u6 [122 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 libopenjp2-7 amd64 2.1.2-1.1+deb9u4 [122 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 libgs9-common all 9.26a~dfsg-0+deb9u6 [5143 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libgs9 amd64 9.26a~dfsg-0+deb9u6 [2213 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 ghostscript amd64 9.26a~dfsg-0+deb9u6 [99.2 kB] Get:197 http://deb.debian.org/debian stretch/main amd64 libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 libcdt5 amd64 2.38.0-17 [59.6 kB] Get:199 http://deb.debian.org/debian stretch/main amd64 libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:200 http://deb.debian.org/debian stretch/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:213 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 libxdot4 amd64 2.38.0-17 [55.6 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 libgvc6 amd64 2.38.0-17 [639 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 libgvpr2 amd64 2.38.0-17 [211 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:223 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 graphviz amd64 2.38.0-17 [802 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:226 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 guile-2.0-libs amd64 2.0.13+1-4 [2232 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:232 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:235 http://deb.debian.org/debian stretch/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:236 http://deb.debian.org/debian stretch/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:238 http://deb.debian.org/debian stretch/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:239 http://deb.debian.org/debian stretch/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:243 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:245 http://deb.debian.org/debian stretch/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:246 http://deb.debian.org/debian stretch/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:248 http://deb.debian.org/debian stretch/main amd64 hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:249 http://deb.debian.org/debian stretch/main amd64 icu-devtools amd64 57.1-6+deb9u4 [178 kB] Get:250 http://deb.debian.org/debian stretch/main amd64 infernal amd64 1.1.2-1 [22.0 MB] Get:251 http://deb.debian.org/debian stretch/main amd64 javascript-common all 11 [6120 B] Get:252 http://deb.debian.org/debian stretch/main amd64 kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 liberror-perl all 0.17024-1 [26.9 kB] Get:254 http://deb.debian.org/debian stretch/main amd64 libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:255 http://deb.debian.org/debian stretch/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:256 http://deb.debian.org/debian stretch/main amd64 libace-perl amd64 1.92-4+b1 [286 kB] Get:257 http://deb.debian.org/debian stretch/main amd64 libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:258 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:259 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:260 http://deb.debian.org/debian stretch/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:261 http://deb.debian.org/debian stretch/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:262 http://deb.debian.org/debian stretch/main amd64 libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:263 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:264 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:265 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:266 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:267 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:268 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:269 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:270 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:271 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:272 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:273 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:274 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:275 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:276 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:277 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:278 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:279 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:280 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:281 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:282 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:283 http://deb.debian.org/debian stretch/main amd64 libapache2-mod-perl2 amd64 2.0.10-2+deb9u1 [886 kB] Get:284 http://deb.debian.org/debian stretch/main amd64 libdbi-perl amd64 1.636-1+b1 [766 kB] Get:285 http://deb.debian.org/debian stretch/main amd64 libapache-dbi-perl all 1.12-1 [54.6 kB] Get:286 http://deb.debian.org/debian stretch/main amd64 libapache2-reload-perl all 0.13-1 [17.4 kB] Get:287 http://deb.debian.org/debian stretch/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:288 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:289 http://deb.debian.org/debian stretch/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:290 http://deb.debian.org/debian stretch/main amd64 libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:291 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:292 http://deb.debian.org/debian stretch/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:293 http://deb.debian.org/debian stretch/main amd64 librole-tiny-perl all 2.000005-1 [19.0 kB] Get:294 http://deb.debian.org/debian stretch/main amd64 libstrictures-perl all 2.000003-1 [18.1 kB] Get:295 http://deb.debian.org/debian stretch/main amd64 libmoo-perl all 2.002005-1 [67.0 kB] Get:296 http://deb.debian.org/debian stretch/main amd64 libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:297 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-perl all 1.000005-1 [271 kB] Get:298 http://deb.debian.org/debian stretch/main amd64 libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:299 http://deb.debian.org/debian stretch/main amd64 libarray-utils-perl all 0.5-1 [6254 B] Get:300 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:301 http://deb.debian.org/debian stretch/main amd64 libtry-tiny-perl all 0.28-1 [22.7 kB] Get:302 http://deb.debian.org/debian stretch/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:303 http://deb.debian.org/debian stretch/main amd64 libvariable-magic-perl amd64 0.61-1 [45.1 kB] Get:304 http://deb.debian.org/debian stretch/main amd64 libb-hooks-endofscope-perl all 0.21-1 [16.3 kB] Get:305 http://deb.debian.org/debian stretch/main amd64 libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:306 http://deb.debian.org/debian stretch/main amd64 libcarp-clan-perl all 6.06-1 [12.9 kB] Get:307 http://deb.debian.org/debian stretch/main amd64 libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:308 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:309 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:310 http://deb.debian.org/debian stretch/main amd64 libblas-dev amd64 3.7.0-2 [162 kB] Get:311 http://deb.debian.org/debian stretch/main amd64 libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:312 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:313 http://deb.debian.org/debian stretch/main amd64 libcapture-tiny-perl all 0.44-1 [25.4 kB] Get:314 http://deb.debian.org/debian stretch/main amd64 libcgi-pm-perl all 4.35-1 [222 kB] Get:315 http://deb.debian.org/debian stretch/main amd64 libfcgi-perl amd64 0.78-2 [38.2 kB] Get:316 http://deb.debian.org/debian stretch/main amd64 libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:317 http://deb.debian.org/debian stretch/main amd64 libclass-c3-perl all 0.32-1 [22.1 kB] Get:318 http://deb.debian.org/debian stretch/main amd64 libclass-c3-xs-perl amd64 0.14-1+b1 [16.3 kB] Get:319 http://deb.debian.org/debian stretch/main amd64 libclass-data-inheritable-perl all 0.08-2 [9296 B] Get:320 http://deb.debian.org/debian stretch/main amd64 libclass-inspector-perl all 1.31-1 [18.7 kB] Get:321 http://deb.debian.org/debian stretch/main amd64 libparams-util-perl amd64 1.07-3+b1 [22.7 kB] Get:322 http://deb.debian.org/debian stretch/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:323 http://deb.debian.org/debian stretch/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:324 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-perl all 0.37-1 [20.8 kB] Get:325 http://deb.debian.org/debian stretch/main amd64 libclass-load-perl all 0.23-1 [15.9 kB] Get:326 http://deb.debian.org/debian stretch/main amd64 libclass-load-xs-perl amd64 0.09-2+b1 [14.4 kB] Get:327 http://deb.debian.org/debian stretch/main amd64 libclass-tiny-perl all 1.006-1 [18.8 kB] Get:328 http://deb.debian.org/debian stretch/main amd64 libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:329 http://deb.debian.org/debian stretch/main amd64 libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:330 http://deb.debian.org/debian stretch/main amd64 libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:331 http://deb.debian.org/debian stretch/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:332 http://deb.debian.org/debian stretch/main amd64 libcrypt-rc4-perl all 2.02-2 [8150 B] Get:333 http://deb.debian.org/debian stretch/main amd64 libcupsfilters1 amd64 1.11.6-3+deb9u1 [129 kB] Get:334 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:335 http://deb.debian.org/debian stretch/main amd64 libdate-calc-perl all 6.4-1 [194 kB] Get:336 http://deb.debian.org/debian stretch/main amd64 libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:337 http://deb.debian.org/debian stretch/main amd64 libdate-manip-perl all 6.57-1 [911 kB] Get:338 http://deb.debian.org/debian stretch/main amd64 libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:339 http://deb.debian.org/debian stretch/main amd64 libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:340 http://deb.debian.org/debian stretch/main amd64 libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:341 http://deb.debian.org/debian stretch/main amd64 libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:342 http://deb.debian.org/debian stretch/main amd64 libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:343 http://deb.debian.org/debian stretch/main amd64 libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:344 http://deb.debian.org/debian stretch/main amd64 libmro-compat-perl all 0.12-1 [13.2 kB] Get:345 http://deb.debian.org/debian stretch/main amd64 libsub-identify-perl amd64 0.12-2+b1 [11.5 kB] Get:346 http://deb.debian.org/debian stretch/main amd64 libdevel-overloadinfo-perl all 0.004-1 [7270 B] Get:347 http://deb.debian.org/debian stretch/main amd64 libsub-name-perl amd64 0.21-1 [13.1 kB] Get:348 http://deb.debian.org/debian stretch/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:349 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-perl all 0.986-1 [49.9 kB] Get:350 http://deb.debian.org/debian stretch/main amd64 libdevel-partialdump-perl all 0.18-2 [14.6 kB] Get:351 http://deb.debian.org/debian stretch/main amd64 libdevel-stacktrace-perl all 2.0200-1 [27.3 kB] Get:352 http://deb.debian.org/debian stretch/main amd64 libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:353 http://deb.debian.org/debian stretch/main amd64 libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:354 http://deb.debian.org/debian stretch/main amd64 libdrm2 amd64 2.4.74-1 [36.2 kB] Get:355 http://deb.debian.org/debian stretch/main amd64 libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:356 http://deb.debian.org/debian stretch/main amd64 libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:357 http://deb.debian.org/debian stretch/main amd64 libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:358 http://deb.debian.org/debian stretch/main amd64 libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:359 http://deb.debian.org/debian stretch/main amd64 libelf1 amd64 0.168-1 [157 kB] Get:360 http://deb.debian.org/debian stretch/main amd64 libemail-date-format-perl all 1.005-1 [7050 B] Get:361 http://deb.debian.org/debian stretch/main amd64 libenv-path-perl all 0.19-1 [22.0 kB] Get:362 http://deb.debian.org/debian stretch/main amd64 libeval-closure-perl all 0.14-1 [11.5 kB] Get:363 http://deb.debian.org/debian stretch/main amd64 libexception-class-perl all 1.42-1 [31.5 kB] Get:364 http://deb.debian.org/debian stretch/main amd64 libipc-system-simple-perl all 1.25-3 [26.9 kB] Get:365 http://deb.debian.org/debian stretch/main amd64 libfile-basedir-perl all 0.07-1 [17.5 kB] Get:366 http://deb.debian.org/debian stretch/main amd64 libfile-desktopentry-perl all 0.22-1 [19.2 kB] Get:367 http://deb.debian.org/debian stretch/main amd64 libfile-fcntllock-perl amd64 0.22-3+b2 [35.3 kB] Get:368 http://deb.debian.org/debian stretch/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:369 http://deb.debian.org/debian stretch/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:370 http://deb.debian.org/debian stretch/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:371 http://deb.debian.org/debian stretch/main amd64 libfile-grep-perl all 0.02-1 [7654 B] Get:372 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:373 http://deb.debian.org/debian stretch/main amd64 libfile-mimeinfo-perl all 0.27-1 [50.2 kB] Get:374 http://deb.debian.org/debian stretch/main amd64 libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:375 http://deb.debian.org/debian stretch/main amd64 libfile-slurper-perl all 0.009-1 [7850 B] Get:376 http://deb.debian.org/debian stretch/main amd64 libfile-which-perl all 1.21-1 [14.3 kB] Get:377 http://deb.debian.org/debian stretch/main amd64 libfindbin-libs-perl all 2.150-1 [28.7 kB] Get:378 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:379 http://deb.debian.org/debian stretch/main amd64 libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:380 http://deb.debian.org/debian stretch/main amd64 libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:381 http://deb.debian.org/debian stretch/main amd64 libfribidi0 amd64 0.19.7-1+deb9u1 [45.6 kB] Get:382 http://deb.debian.org/debian stretch/main amd64 libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:383 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:384 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:385 http://deb.debian.org/debian stretch/main amd64 libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:386 http://deb.debian.org/debian stretch/main amd64 libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:387 http://deb.debian.org/debian stretch/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:388 http://deb.debian.org/debian stretch/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:389 http://deb.debian.org/debian stretch/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:390 http://deb.debian.org/debian stretch/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:391 http://deb.debian.org/debian stretch/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:392 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:393 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:394 http://deb.debian.org/debian stretch/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:395 http://deb.debian.org/debian stretch/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:396 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:397 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:398 http://deb.debian.org/debian stretch/main amd64 libgraph-perl all 1:0.96-2 [126 kB] Get:399 http://deb.debian.org/debian stretch/main amd64 libscalar-list-utils-perl amd64 1:1.47-1 [54.4 kB] Get:400 http://deb.debian.org/debian stretch/main amd64 libspiffy-perl all 0.41-1 [26.1 kB] Get:401 http://deb.debian.org/debian stretch/main amd64 libio-all-perl all 0.86-2 [73.4 kB] Get:402 http://deb.debian.org/debian stretch/main amd64 libparse-yapp-perl all 1.05-12 [50.5 kB] Get:403 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:404 http://deb.debian.org/debian stretch/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:405 http://deb.debian.org/debian stretch/main amd64 libgraph-readwrite-perl all 2.09-1 [44.7 kB] Get:406 http://deb.debian.org/debian stretch/main amd64 libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:407 http://deb.debian.org/debian stretch/main amd64 libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:408 http://deb.debian.org/debian stretch/main amd64 libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:409 http://deb.debian.org/debian stretch/main amd64 libxml-twig-perl all 1:3.50-1 [179 kB] Get:410 http://deb.debian.org/debian stretch/main amd64 libxml-xpath-perl all 1.40-1 [69.2 kB] Get:411 http://deb.debian.org/debian stretch/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get:412 http://deb.debian.org/debian stretch/main amd64 libntlm0 amd64 1.4-8 [20.9 kB] Get:413 http://deb.debian.org/debian stretch/main amd64 libgsasl7 amd64 1.8.0-8+b2 [207 kB] Get:414 http://deb.debian.org/debian stretch/main amd64 libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:415 http://deb.debian.org/debian stretch/main amd64 beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:416 http://deb.debian.org/debian stretch/main amd64 libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:417 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:418 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:419 http://deb.debian.org/debian stretch/main amd64 libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:420 http://deb.debian.org/debian stretch/main amd64 libhts1 amd64 1.3.2-2 [257 kB] Get:421 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:422 http://deb.debian.org/debian stretch/main amd64 libicu-dev amd64 57.1-6+deb9u4 [16.5 MB] Get:423 http://deb.debian.org/debian stretch/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:424 http://deb.debian.org/debian stretch/main amd64 libio-stringy-perl all 2.111-2 [61.2 kB] Get:425 http://deb.debian.org/debian stretch/main amd64 libipc-shareable-perl all 0.61-1 [35.4 kB] Get:426 http://deb.debian.org/debian stretch/main amd64 libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:427 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:428 http://deb.debian.org/debian stretch/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:429 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:430 http://deb.debian.org/debian stretch/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:431 http://deb.debian.org/debian stretch/main amd64 libkyotocabinet16v5 amd64 1.2.76-4.2+b1 [298 kB] Get:432 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:433 http://deb.debian.org/debian stretch/main amd64 liblapack-dev amd64 3.7.0-2 [2170 kB] Get:434 http://deb.debian.org/debian stretch/main amd64 liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:435 http://deb.debian.org/debian stretch/main amd64 libparams-validate-perl amd64 1.26-1 [66.0 kB] Get:436 http://deb.debian.org/debian stretch/main amd64 liblog-dispatch-perl all 2.58-1 [72.5 kB] Get:437 http://deb.debian.org/debian stretch/main amd64 liblog-log4perl-perl all 1.48-1+deb9u1 [376 kB] Get:438 http://deb.debian.org/debian stretch/main amd64 liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:439 http://deb.debian.org/debian stretch/main amd64 libsys-hostname-long-perl all 1.5-1 [12.0 kB] Get:440 http://deb.debian.org/debian stretch/main amd64 libmail-sendmail-perl all 0.79.16-2 [24.9 kB] Get:441 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:442 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:443 http://deb.debian.org/debian stretch/main amd64 mailutils-common all 1:3.1.1-1 [642 kB] Get:444 http://deb.debian.org/debian stretch/main amd64 libpython2.7 amd64 2.7.13-2+deb9u3 [1071 kB] Get:445 http://deb.debian.org/debian stretch/main amd64 libmailutils5 amd64 1:3.1.1-1 [817 kB] Get:446 http://deb.debian.org/debian stretch/main amd64 libmath-derivative-perl all 0.04-2 [7208 B] Get:447 http://deb.debian.org/debian stretch/main amd64 libmath-spline-perl all 0.02-1 [7992 B] Get:448 http://deb.debian.org/debian stretch/main amd64 libmime-lite-perl all 3.030-2 [72.3 kB] Get:449 http://deb.debian.org/debian stretch/main amd64 libmime-tools-perl all 5.508-1 [212 kB] Get:450 http://deb.debian.org/debian stretch/main amd64 libmime-types-perl all 2.13-1 [61.7 kB] Get:451 http://deb.debian.org/debian stretch/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:452 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-conflicts-perl all 0.003-1 [6882 B] Get:453 http://deb.debian.org/debian stretch/main amd64 libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB] Get:454 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-xs-perl amd64 0.28-3+b1 [17.9 kB] Get:455 http://deb.debian.org/debian stretch/main amd64 libmoose-perl amd64 2.1807-1 [801 kB] Get:456 http://deb.debian.org/debian stretch/main amd64 libtinfo-dev amd64 6.0+20161126-1+deb9u2 [79.2 kB] Get:457 http://deb.debian.org/debian stretch/main amd64 libncurses5-dev amd64 6.0+20161126-1+deb9u2 [175 kB] Get:458 http://deb.debian.org/debian stretch/main amd64 libnet-dbus-perl amd64 1.1.0-4+b1 [179 kB] Get:459 http://deb.debian.org/debian stretch/main amd64 libole-storage-lite-perl all 0.19-1+deb9u1 [23.4 kB] Get:460 http://deb.debian.org/debian stretch/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:461 http://deb.debian.org/debian stretch/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:462 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:463 http://deb.debian.org/debian stretch/main amd64 libpcre16-3 amd64 2:8.39-3 [258 kB] Get:464 http://deb.debian.org/debian stretch/main amd64 libpcre32-3 amd64 2:8.39-3 [248 kB] Get:465 http://deb.debian.org/debian stretch/main amd64 libpcre3-dev amd64 2:8.39-3 [647 kB] Get:466 http://deb.debian.org/debian stretch/main amd64 libperlio-utf8-strict-perl amd64 0.006-1+b2 [11.3 kB] Get:467 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:468 http://deb.debian.org/debian stretch/main amd64 libpng-dev amd64 1.6.28-1+deb9u1 [250 kB] Get:469 http://deb.debian.org/debian stretch/main amd64 libpng-tools amd64 1.6.28-1+deb9u1 [133 kB] Get:470 http://deb.debian.org/debian stretch/main amd64 libpostscript-perl all 0.06-2 [31.4 kB] Get:471 http://deb.debian.org/debian stretch/main amd64 libreadline-dev amd64 7.0-3 [132 kB] Get:472 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:473 http://deb.debian.org/debian stretch/main amd64 libtask-weaken-perl all 1.04-1 [7990 B] Get:474 http://deb.debian.org/debian stretch/main amd64 libsoap-lite-perl all 1.20-1 [259 kB] Get:475 http://deb.debian.org/debian stretch/main amd64 libsort-naturally-perl all 1.03-1 [13.9 kB] Get:476 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:477 http://deb.debian.org/debian stretch/main amd64 libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:478 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:479 http://deb.debian.org/debian stretch/main amd64 libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:480 http://deb.debian.org/debian stretch/main amd64 libsub-uplevel-perl all 0.2600-1 [16.1 kB] Get:481 http://deb.debian.org/debian stretch/main amd64 libsvg-perl all 2.64-1 [69.8 kB] Get:482 http://deb.debian.org/debian stretch/main amd64 libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:483 http://deb.debian.org/debian stretch/main amd64 libsvg-graph-perl all 0.02-2 [130 kB] Get:484 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:485 http://deb.debian.org/debian stretch/main amd64 libtest-deep-perl all 1.126-1 [48.4 kB] Get:486 http://deb.debian.org/debian stretch/main amd64 libtext-diff-perl all 1.44-1 [27.4 kB] Get:487 http://deb.debian.org/debian stretch/main amd64 libtest-differences-perl all 0.64-1 [18.0 kB] Get:488 http://deb.debian.org/debian stretch/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:489 http://deb.debian.org/debian stretch/main amd64 libtest-file-perl all 1.442-1 [19.8 kB] Get:490 http://deb.debian.org/debian stretch/main amd64 libtest-files-perl all 0.14-1 [11.2 kB] Get:491 http://deb.debian.org/debian stretch/main amd64 libtest-warn-perl all 0.32-1 [15.1 kB] Get:492 http://deb.debian.org/debian stretch/main amd64 libtest-simple-perl all 1.302075-1 [298 kB] Get:493 http://deb.debian.org/debian stretch/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:494 http://deb.debian.org/debian stretch/main amd64 libtest-output-perl all 1.03-1 [13.9 kB] Get:495 http://deb.debian.org/debian stretch/main amd64 libtext-csv-perl all 1.33-2 [50.5 kB] Get:496 http://deb.debian.org/debian stretch/main amd64 libtext-csv-xs-perl amd64 1.26-1 [114 kB] Get:497 http://deb.debian.org/debian stretch/main amd64 libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:498 http://deb.debian.org/debian stretch/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:499 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:500 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:501 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:502 http://deb.debian.org/debian stretch/main amd64 libx11-protocol-perl all 0.56-7 [150 kB] Get:503 http://deb.debian.org/debian stretch/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:504 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:505 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:506 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:507 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:508 http://deb.debian.org/debian stretch/main amd64 libxml-perl all 0.08-2 [113 kB] Get:509 http://deb.debian.org/debian stretch/main amd64 libxml-regexp-perl all 0.04-1 [8370 B] Get:510 http://deb.debian.org/debian stretch/main amd64 libxml-dom-perl all 1.44-2 [179 kB] Get:511 http://deb.debian.org/debian stretch/main amd64 libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:512 http://deb.debian.org/debian stretch/main amd64 libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:513 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:514 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:515 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:516 http://deb.debian.org/debian stretch/main amd64 libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:517 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:518 http://deb.debian.org/debian stretch/main amd64 libxslt1.1 amd64 1.1.29-2.1+deb9u2 [233 kB] Get:519 http://deb.debian.org/debian stretch/main amd64 libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:520 http://deb.debian.org/debian stretch/main amd64 libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:521 http://deb.debian.org/debian stretch/main amd64 libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:522 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:523 http://deb.debian.org/debian stretch/main amd64 libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:524 http://deb.debian.org/debian stretch/main amd64 libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:525 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:526 http://deb.debian.org/debian stretch/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:527 http://deb.debian.org/debian stretch/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:528 http://deb.debian.org/debian stretch/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:529 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:530 http://deb.debian.org/debian stretch/main amd64 libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:531 http://deb.debian.org/debian stretch/main amd64 libyaml-perl all 1.21-1 [64.8 kB] Get:532 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:533 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:534 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:535 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:536 http://deb.debian.org/debian stretch/main amd64 r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:537 http://deb.debian.org/debian stretch/main amd64 littler all 0.3.1-1 [11.7 kB] Get:538 http://deb.debian.org/debian stretch/main amd64 lynx-common all 2.8.9dev11-1 [1098 kB] Get:539 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:540 http://deb.debian.org/debian stretch/main amd64 mailutils amd64 1:3.1.1-1 [573 kB] Get:541 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] Get:542 http://deb.debian.org/debian stretch/main amd64 maq amd64 0.7.1-7 [311 kB] Get:543 http://deb.debian.org/debian stretch/main amd64 mcl amd64 1:14-137-1+b1 [619 kB] Get:544 http://deb.debian.org/debian stretch/main amd64 muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:545 http://deb.debian.org/debian stretch/main amd64 mustang amd64 3.2.3-1 [113 kB] Get:546 http://deb.debian.org/debian stretch/main amd64 perl-doc all 5.24.1-3+deb9u7 [7145 kB] Get:547 http://deb.debian.org/debian stretch/main amd64 perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:548 http://deb.debian.org/debian stretch/main amd64 phylip amd64 1:3.696+dfsg-5 [942 kB] Get:549 http://deb.debian.org/debian stretch/main amd64 openmpi-common all 2.0.2-2 [149 kB] Get:550 http://deb.debian.org/debian stretch/main amd64 openmpi-bin amd64 2.0.2-2 [186 kB] Get:551 http://deb.debian.org/debian stretch/main amd64 phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:552 http://deb.debian.org/debian stretch/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:553 http://deb.debian.org/debian stretch/main amd64 poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:554 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:555 http://deb.debian.org/debian stretch/main amd64 primer3 amd64 2.3.7-3 [173 kB] Get:556 http://deb.debian.org/debian stretch/main amd64 probalign amd64 1.4-5 [65.4 kB] Get:557 http://deb.debian.org/debian stretch/main amd64 probcons amd64 1.12-11 [107 kB] Get:558 http://deb.debian.org/debian stretch/main amd64 proda amd64 1.0-10 [60.1 kB] Get:559 http://deb.debian.org/debian stretch/main amd64 psmisc amd64 22.21-2.1+b2 [123 kB] Get:560 http://deb.debian.org/debian stretch/main amd64 xauth amd64 1:1.0.9-1+b2 [39.6 kB] Get:561 http://deb.debian.org/debian stretch/main amd64 r-base-dev all 3.3.3-1 [4402 B] Get:562 http://deb.debian.org/debian stretch/main amd64 r-cran-assertthat all 0.1-1 [43.3 kB] Get:563 http://deb.debian.org/debian stretch/main amd64 r-cran-boot all 1.3-18-2 [577 kB] Get:564 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:565 http://deb.debian.org/debian stretch/main amd64 r-cran-class amd64 7.3-14-1 [80.9 kB] Get:566 http://deb.debian.org/debian stretch/main amd64 r-cran-cluster amd64 2.0.5-1 [490 kB] Get:567 http://deb.debian.org/debian stretch/main amd64 r-cran-codetools all 0.2-15-1 [46.2 kB] Get:568 http://deb.debian.org/debian stretch/main amd64 r-cran-colorspace amd64 1.3-2-1 [388 kB] Get:569 http://deb.debian.org/debian stretch/main amd64 r-cran-crayon amd64 1.3.2-1 [705 kB] Get:570 http://deb.debian.org/debian stretch/main amd64 r-cran-dichromat all 2.0.0-3 [146 kB] Get:571 http://deb.debian.org/debian stretch/main amd64 r-cran-digest amd64 0.6.11-1 [112 kB] Get:572 http://deb.debian.org/debian stretch/main amd64 r-cran-foreign amd64 0.8.67-1 [211 kB] Get:573 http://deb.debian.org/debian stretch/main amd64 r-cran-gtable all 0.2.0-1 [65.1 kB] Get:574 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:575 http://deb.debian.org/debian stretch/main amd64 r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:576 http://deb.debian.org/debian stretch/main amd64 r-cran-plyr amd64 1.8.4-1 [727 kB] Get:577 http://deb.debian.org/debian stretch/main amd64 r-cran-stringi amd64 1.1.2-1 [606 kB] Get:578 http://deb.debian.org/debian stretch/main amd64 r-cran-magrittr amd64 1.5-3 [147 kB] Get:579 http://deb.debian.org/debian stretch/main amd64 r-cran-stringr all 1.1.0-1 [117 kB] Get:580 http://deb.debian.org/debian stretch/main amd64 r-cran-reshape2 amd64 1.4.2-1 [87.5 kB] Get:581 http://deb.debian.org/debian stretch/main amd64 r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:582 http://deb.debian.org/debian stretch/main amd64 r-cran-munsell all 0.4.3-1 [127 kB] Get:583 http://deb.debian.org/debian stretch/main amd64 r-cran-labeling all 0.3-1 [39.9 kB] Get:584 http://deb.debian.org/debian stretch/main amd64 r-cran-scales amd64 0.4.1-1 [200 kB] Get:585 http://deb.debian.org/debian stretch/main amd64 r-cran-lazyeval amd64 0.2.0-1 [112 kB] Get:586 http://deb.debian.org/debian stretch/main amd64 r-cran-tibble amd64 1.2-1 [121 kB] Get:587 http://deb.debian.org/debian stretch/main amd64 r-cran-ggplot2 all 2.2.1-2 [2658 kB] Get:588 http://deb.debian.org/debian stretch/main amd64 r-cran-kernsmooth amd64 2.23-15-2 [81.7 kB] Get:589 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:590 http://deb.debian.org/debian stretch/main amd64 r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:591 http://deb.debian.org/debian stretch/main amd64 r-cran-nlme amd64 3.1.129-1 [2042 kB] Get:592 http://deb.debian.org/debian stretch/main amd64 r-cran-mgcv amd64 1.8-16-1 [2106 kB] Get:593 http://deb.debian.org/debian stretch/main amd64 r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:594 http://deb.debian.org/debian stretch/main amd64 r-cran-survival amd64 2.40-1-1 [4863 kB] Get:595 http://deb.debian.org/debian stretch/main amd64 r-cran-rpart amd64 4.1-10-2 [861 kB] Get:596 http://deb.debian.org/debian stretch/main amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] Get:597 http://deb.debian.org/debian stretch/main amd64 r-doc-html all 3.3.3-1 [551 kB] Get:598 http://deb.debian.org/debian stretch/main amd64 r-recommended all 3.3.3-1 [2706 B] Get:599 http://deb.debian.org/debian stretch/main amd64 rubygems-integration all 1.11 [4994 B] Get:600 http://deb.debian.org/debian stretch/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:601 http://deb.debian.org/debian stretch/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:602 http://deb.debian.org/debian stretch/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:603 http://deb.debian.org/debian stretch/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:604 http://deb.debian.org/debian stretch/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:605 http://deb.debian.org/debian stretch/main amd64 libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:606 http://deb.debian.org/debian stretch/main amd64 ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:607 http://deb.debian.org/debian stretch/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:608 http://deb.debian.org/debian stretch/main amd64 rake all 10.5.0-2+deb9u1 [49.7 kB] Get:609 http://deb.debian.org/debian stretch/main amd64 raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:610 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:611 http://deb.debian.org/debian stretch/main amd64 sysstat amd64 11.4.3-2 [360 kB] Get:612 http://deb.debian.org/debian stretch/main amd64 parallel all 20161222-1 [307 kB] Get:613 http://deb.debian.org/debian stretch/main amd64 fasttree amd64 2.1.9-1 [132 kB] Get:614 http://deb.debian.org/debian stretch/main amd64 roary all 3.8.0+dfsg-1 [170 kB] Get:615 http://deb.debian.org/debian stretch/main amd64 samtools amd64 1.3.1-3 [254 kB] Get:616 http://deb.debian.org/debian stretch/main amd64 sim4 amd64 0.0.20121010-4 [396 kB] Get:617 http://deb.debian.org/debian stretch/main amd64 t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:618 http://deb.debian.org/debian stretch/main amd64 tcpd amd64 7.6.q-26 [23.3 kB] Get:619 http://deb.debian.org/debian stretch/main amd64 tigr-glimmer amd64 3.02b-1 [283 kB] Get:620 http://deb.debian.org/debian stretch/main amd64 tm-align amd64 20160521+dfsg-2 [868 kB] Get:621 http://deb.debian.org/debian stretch/main amd64 wise-data all 2.4.1-19 [108 kB] Get:622 http://deb.debian.org/debian stretch/main amd64 wise amd64 2.4.1-19 [993 kB] Get:623 http://deb.debian.org/debian stretch/main amd64 x11-utils amd64 7.7+3+b1 [202 kB] Get:624 http://deb.debian.org/debian stretch/main amd64 x11-xserver-utils amd64 7.7+7+b1 [167 kB] Get:625 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:626 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:627 http://deb.debian.org/debian stretch/main amd64 bowtie amd64 1.1.2-6 [1618 kB] Get:628 http://deb.debian.org/debian stretch/main amd64 gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:629 http://deb.debian.org/debian stretch/main amd64 libgd-perl amd64 2.53-3 [177 kB] Get:630 http://deb.debian.org/debian stretch/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:631 http://deb.debian.org/debian stretch/main amd64 libtxc-dxtn-s2tc amd64 1.0+git20151227-2 [48.4 kB] Get:632 http://deb.debian.org/debian stretch/main amd64 lynx amd64 2.8.9dev11-1 [632 kB] Get:633 http://deb.debian.org/debian stretch/main amd64 med-config all 3.0.1 [17.1 kB] Get:634 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 398 MB in 11s (36.0 MB/s) Selecting previously unselected package lsb-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) ... Selecting previously unselected package cron. Preparing to unpack .../01-cron_3.0pl1-128+deb9u1_amd64.deb ... Unpacking cron (3.0pl1-128+deb9u1) ... Selecting previously unselected package perl-modules-5.24. Preparing to unpack .../02-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... 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Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libmpfr4:amd64 (3.1.5-1) ... Setting up readline-common (7.0-3) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libsigsegv2:amd64 (2.10-5) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7445 files and directories currently installed.) Preparing to unpack .../000-gawk_1%3a4.1.4+dfsg-1_amd64.deb ... Unpacking gawk (1:4.1.4+dfsg-1) ... 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Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Unpacking parallel (20161222-1) ... Selecting previously unselected package fasttree. Preparing to unpack .../579-fasttree_2.1.9-1_amd64.deb ... Unpacking fasttree (2.1.9-1) ... Selecting previously unselected package roary. Preparing to unpack .../580-roary_3.8.0+dfsg-1_all.deb ... Unpacking roary (3.8.0+dfsg-1) ... Selecting previously unselected package samtools. Preparing to unpack .../581-samtools_1.3.1-3_amd64.deb ... Unpacking samtools (1.3.1-3) ... Selecting previously unselected package sim4. Preparing to unpack .../582-sim4_0.0.20121010-4_amd64.deb ... Unpacking sim4 (0.0.20121010-4) ... Selecting previously unselected package t-coffee. Preparing to unpack .../583-t-coffee_11.00.8cbe486-5_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-5) ... 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Selecting previously unselected package libtxc-dxtn-s2tc:amd64. Preparing to unpack .../597-libtxc-dxtn-s2tc_1.0+git20151227-2_amd64.deb ... Unpacking libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... Selecting previously unselected package lynx. Preparing to unpack .../598-lynx_2.8.9dev11-1_amd64.deb ... Unpacking lynx (2.8.9dev11-1) ... Selecting previously unselected package med-config. Preparing to unpack .../599-med-config_3.0.1_all.deb ... Unpacking med-config (3.0.1) ... Selecting previously unselected package publicsuffix. Preparing to unpack .../600-publicsuffix_20190415.1030-0+deb9u1_all.deb ... Unpacking publicsuffix (20190415.1030-0+deb9u1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up tigr-glimmer (3.02b-1) ... Setting up cdbs (0.4.150) ... Setting up libgs9-common (9.26a~dfsg-0+deb9u6) ... Setting up libnpth0:amd64 (1.3-1) ... Setting up phylip (1:3.696+dfsg-5) ... Setting up libargtable2-0 (13-1) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up libatomic1:amd64 (6.3.0-18+deb9u1) ... Setting up libapr1:amd64 (1.5.2-5) ... Setting up prank (0.0.150803-2) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up manpages (4.10-2) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up kalign (1:2.03+20110620-3) ... Setting up clustalo (1.2.4-1) ... Setting up libpathplan4 (2.38.0-17) ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libcc1-0:amd64 (6.3.0-18+deb9u1) ... Setting up bwa (0.7.15-2+deb9u1) ... Setting up make (4.1-9.1) ... Setting up libasan3:amd64 (6.3.0-18+deb9u1) ... Setting up maq (0.7.1-7) ... Setting up libopenjp2-7:amd64 (2.1.2-1.1+deb9u4) ... Setting up libxdot4 (2.38.0-17) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libdivsufsort3:amd64 (2.0.1-2) ... Setting up psmisc (22.21-2.1+b2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up bedtools (2.26.0+dfsg-3) ... Setting up exim4-config (4.89-2+deb9u7) ... Adding system-user for exim (v4) Setting up mime-support (3.60) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.3) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up t-coffee (11.00.8cbe486-5) ... Setting up liblcms2-2:amd64 (2.8-4+deb9u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libgpm2:amd64 (1.20.4-6.2+b1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.7-8) ... Setting up libcilkrts5:amd64 (6.3.0-18+deb9u1) ... Setting up libblas-common (3.7.0-2) ... Setting up libpng-tools (1.6.28-1+deb9u1) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 26 12:38:55 UTC 2022. Universal Time is now: Sat Nov 26 12:38:55 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libelf1:amd64 (0.168-1) ... Setting up libubsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libtsan0:amd64 (6.3.0-18+deb9u1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up mysql-common (5.8+1.0.2) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxshmfence1:amd64 (1.2-1+b2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up infernal (1.1.2-1) ... Setting up probcons (1.12-11) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up linux-libc-dev:amd64 (4.9.228-1) ... Setting up dialign (2.2.1-8) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libtinfo-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up libgc1c2:amd64 (1:7.4.2-8) ... Setting up menu (2.1.47+b1) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/s2tc/libtxc_dxtn.so to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up libksba8:amd64 (1.3.5-2) ... Setting up libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Setting up libglapi-mesa:amd64 (13.0.6-1+b2) ... Setting up sgml-base (1.29) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up fonts-liberation (1:1.07.4-2) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up zip (3.0-11+b1) ... Setting up tm-align (20160521+dfsg-2) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up fonts-noto-mono (20161116-1) ... Setting up gnupg-l10n (2.1.18-8~deb9u4) ... Setting up libdrm2:amd64 (2.4.74-1) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up lsb-base (9.20161125) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up liblsan0:amd64 (6.3.0-18+deb9u1) ... Setting up procps (2:3.3.12-3+deb9u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up fonts-lato (2.0-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Setting up sim4 (0.0.20121010-4) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up raxml (8.2.9+dfsg-1+b1) ... Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up amap-align (2.2-6) ... Setting up libenv-path-perl (0.19-1) ... Setting up libsys-hostname-long-perl (1.5-1) ... Setting up libfile-fcntllock-perl (0.22-3+b2) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libpackage-stash-xs-perl (0.28-3+b1) ... Setting up libjbig2dec0:amd64 (0.13-4.1) ... Setting up libstrictures-perl (2.000003-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libmpx2:amd64 (6.3.0-18+deb9u1) ... Setting up libisl15:amd64 (0.18-1) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) ... Setting up libntlm0:amd64 (1.4-8) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up patch (2.7.5-1+deb9u2) ... Setting up proda (1.0-10) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libmail-sendmail-perl (0.79.16-2) ... Setting up krb5-locales (1.15-1+deb9u1) ... Setting up openmpi-common (2.0.2-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up wise-data (2.4.1-19) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libbsd-resource-perl (1.2910-1+b1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up publicsuffix (20190415.1030-0+deb9u1) ... Setting up fasttree (2.1.9-1) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up bzip2-doc (1.0.6-8.1) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Setting up liburi-perl (1.71-1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up primer3 (2.3.7-3) ... Setting up libaprutil1:amd64 (1.5.4-3) ... Setting up libfakeroot:amd64 (1.21-3.1) ... Setting up libscalar-list-utils-perl (1:1.47-1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libreadline-dev:amd64 (7.0-3) ... Setting up mcl (1:14-137-1+b1) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libfile-grep-perl (0.02-1) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libann0 (1.1.2+doc-6) ... Setting up libfontenc1:amd64 (1:1.1.3-1+b2) ... Setting up libdate-manip-perl (6.57-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libmldbm-perl (2.05-2) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libfribidi0:amd64 (0.19.7-1+deb9u1) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up probalign (1.4-5) ... Setting up libclone-perl (0.38-2+b1) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up libx11-protocol-perl (0.56-7) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libpcrecpp0v5:amd64 (2:8.39-3) ... Setting up libpcre32-3:amd64 (2:8.39-3) ... Setting up libnet-http-perl (6.12-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libmpc3:amd64 (1.0.3-1+b2) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up poa (2.0+20060928-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up binutils (2.28-5) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up icu-devtools (57.1-6+deb9u4) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libdrm-radeon1:amd64 (2.4.74-1) ... Setting up libpcre16-3:amd64 (2:8.39-3) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libthai-data (0.1.26-1) ... Setting up liblzma-dev:amd64 (5.2.2-1.2+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up javascript-common (11) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libdrm-nouveau2:amd64 (2.4.74-1) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libsub-uplevel-perl (0.2600-1) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up libparams-util-perl (1.07-3+b1) ... Setting up ruby-minitest (5.9.0-1) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up mustang (3.2.3-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up libsub-name-perl (0.21-1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libtext-csv-perl (1.33-2) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up manpages-dev (4.10-2) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up cron (3.0pl1-128+deb9u1) ... Adding group `crontab' (GID 151) ... Done. update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpostscript-perl (0.06-2) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up libfcgi-perl (0.78-2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libcdt5 (2.38.0-17) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libitm1:amd64 (6.3.0-18+deb9u1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libfile-slurper-perl (0.009-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up hyphy-common (2.2.7+dfsg-1) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up r-doc-html (3.3.3-1) ... Setting up libclass-c3-perl (0.32-1) ... Setting up libwrap0:amd64 (7.6.q-26) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libspiffy-perl (0.41-1) ... Setting up mailutils-common (1:3.1.1-1) ... Setting up libtest-warn-perl (0.32-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up netbase (5.4) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libedit2:amd64 (3.1-20160903-3) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libclass-c3-xs-perl (0.14-1+b1) ... Setting up cpp (4:6.3.0-4) ... Setting up libsub-install-perl (0.928-1) ... Setting up libfindbin-libs-perl (2.150-1) ... Setting up libdevel-symdump-perl (2.17-1) ... Setting up mafft (7.307-1) ... Setting up libtest-deep-perl (1.126-1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libparse-yapp-perl (1.05-12) ... Setting up libhpdf-2.2.1 (2.2.1-1.1+b1) ... Setting up cd-hit (4.6.6-2) ... Setting up libipc-sharelite-perl (0.17-4) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtry-tiny-perl (0.28-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libpcre3-dev:amd64 (2:8.39-3) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up liblog-log4perl-perl (1.48-1+deb9u1) ... Setting up libbz2-dev:amd64 (1.0.6-8.1) ... Setting up libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up sysstat (11.4.3-2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libio-pty-perl (1:1.08-1.1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.74-1) ... Setting up libfile-which-perl (1.21-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libtext-csv-xs-perl (1.26-1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up liberror-perl (0.17024-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libvariable-magic-perl (0.61-1) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up librole-tiny-perl (2.000005-1) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libgvpr2 (2.38.0-17) ... Setting up libemail-date-format-perl (1.005-1) ... Setting up libbio-asn1-entrezgene-perl (1.720-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up perl-doc (5.24.1-3+deb9u7) ... Setting up libmodule-runtime-perl (0.014-2) ... Setting up libset-scalar-perl (1.29-2) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up libsvg-perl (2.64-1) ... Setting up libipc-system-simple-perl (1.25-3) ... Setting up libfile-basedir-perl (0.07-1) ... Setting up libdevel-stacktrace-perl (2.0200-1) ... Setting up libclass-tiny-perl (1.006-1) ... Setting up mummer (3.23+dfsg-2) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libtext-diff-perl (1.44-1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up dialign-tx (1.0.2-9) ... Setting up libcapture-tiny-perl (0.44-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libexporter-tiny-perl (0.042-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-9) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up exonerate (2.4.0-2) ... Setting up libcarp-clan-perl (6.06-1) ... Setting up libdpkg-perl (1.18.25) ... Setting up libmath-derivative-perl (0.04-2) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libyaml-perl (1.21-1) ... Setting up libperlio-utf8-strict-perl (0.006-1+b2) ... Setting up libparse-recdescent-perl (1.967013+dfsg-1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libipc-shareable-perl (0.61-1) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libtype-tiny-xs-perl (0.012-1+b2) ... Setting up libicu-dev (57.1-6+deb9u4) ... Setting up libtest-simple-perl (1.302075-1) ... Setting up exim4-base (4.89-2+deb9u7) ... exim: DB upgrade, deleting hints-db Setting up libjcode-pm-perl (2.06-1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up libarray-utils-perl (0.5-1) ... Setting up libsub-identify-perl (0.12-2+b1) ... Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up tcpd (7.6.q-26) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libdevel-caller-perl (2.06-1+b4) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libtest-file-perl (1.442-1) ... Setting up gcc-6 (6.3.0-18+deb9u1) ... Setting up libio-all-perl (0.86-2) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libmime-types-perl (2.13-1) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up g++-6 (6.3.0-18+deb9u1) ... Setting up libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up libalgorithm-merge-perl (0.08-3) ... Setting up pkg-config (0.29-4+b1) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up dpkg-dev (1.18.25) ... Setting up libalgorithm-diff-xs-perl (0.04-4+b2) ... Setting up libfile-desktopentry-perl (0.22-1) ... Setting up wise (2.4.1-19) ... Setting up guile-2.0-libs:amd64 (2.0.13+1-4) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up libpython2.7:amd64 (2.7.13-2+deb9u3) ... Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up bioperl (1.7.1-2) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up rubygems-integration (1.11) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libeval-closure-perl (0.14-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libpng-dev:amd64 (1.6.28-1+deb9u1) ... Setting up dbus (1.10.32-0+deb9u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up libdbd-mysql-perl (4.041-2) ... Setting up libfile-mimeinfo-perl (0.27-1) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up python (2.7.13-2) ... Setting up libole-storage-lite-perl (0.19-1+deb9u1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up liblist-moreutils-perl (0.416-1+b1) ... Setting up libhtml-tableextract-perl (2.13-1) ... Setting up libdevel-lexalias-perl (0.05-1+b4) ... Setting up libibverbs1 (1.2.1-2) ... Setting up libxcb-present0:amd64 (1.12-1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libstatistics-descriptive-perl (3.0612-1) ... Setting up libxcb-dri2-0:amd64 (1.12-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libxcb-dri3-0:amd64 (1.12-1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libxcb-glx0:amd64 (1.12-1) ... Setting up gfortran-6 (6.3.0-18+deb9u1) ... Setting up parallel (20161222-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libmath-spline-perl (0.02-1) ... Setting up bowtie (1.1.2-6) ... Setting up libtest-differences-perl (0.64-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libexception-class-perl (1.42-1) ... Setting up libtest-files-perl (0.14-1) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libtype-tiny-perl (1.000005-1) ... Setting up libtest-output-perl (1.03-1) ... Setting up gnupg (2.1.18-8~deb9u4) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libgl1-mesa-dri:amd64 (13.0.6-1+b2) ... Setting up libmodule-runtime-conflicts-perl (0.003-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up librdmacm1 (1.1.0-2) ... Setting up gcc (4:6.3.0-4) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up libcgi-fast-perl (1:2.12-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libparams-validate-perl (1.26-1) ... Setting up libxcb-sync1:amd64 (1.12-1) ... Setting up libjpeg-dev (1:1.5.1-2) ... Setting up libdate-calc-perl (6.4-1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libace-perl (1.92-4+b1) ... Setting up bioperl-run (1.7.1-3) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxcb-shape0:amd64 (1.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libmoo-perl (2.002005-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up g++ (4:6.3.0-4) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libavahi-client3:amd64 (0.6.32-2) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libb-hooks-endofscope-perl (0.21-1) ... Setting up libgts-bin (0.7.6+darcs121130-4) ... Setting up exim4-daemon-light (4.89-2+deb9u7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Initializing GnuTLS DH parameter file Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libxml-sax-writer-perl (0.56-1) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libtest-most-perl (0.35-1) ... Setting up libaprutil1-ldap:amd64 (1.5.4-3) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libpackage-stash-perl (0.37-1) ... Setting up gfortran (4:6.3.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up liblog-dispatch-perl (2.58-1) ... Setting up libsvg-graph-perl (0.02-2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libfabric1 (1.4.0-1) ... Setting up libblas-dev (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up build-essential (12.3) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libarray-compare-perl (3.0.0-1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libdate-calc-xs-perl (6.4-1+b2) ... Setting up apache2-bin (2.4.25-3+deb9u9) ... Setting up libgd3:amd64 (2.2.4-2+deb9u5) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libdevel-overloadinfo-perl (0.004-1) ... Setting up libgd-perl (2.53-3) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libclass-load-perl (0.23-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up xauth (1:1.0.9-1+b2) ... Setting up libpackage-deprecationmanager-perl (0.17-1) ... Setting up libxml-simple-perl (2.22-1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Setting up libpq5:amd64 (9.6.17-0+deb9u1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up libxml-libxslt-perl (1.95-1+b1) ... Setting up exim4 (4.89-2+deb9u7) ... Setting up perl-tk (1:804.033-1+b3) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up emboss-lib (6.6.0+dfsg-6) ... Setting up libclass-load-xs-perl (0.09-2+b1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up libopenmpi2:amd64 (2.0.2-2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up beignet-opencl-icd:amd64 (1.3.0-4) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libcups2:amd64 (2.2.1-8+deb9u6) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up liblapack-dev (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libgsasl7 (1.8.0-8+b2) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libmailutils5:amd64 (1:3.1.1-1) ... Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libmailtools-perl (2.18-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up blast2 (1:2.6.0-1) ... Setting up libmoose-perl (2.1807-1) ... Setting up libhmsbeagle1v5 (2.1.2+20160831-5) ... Setting up libdbd-pg-perl (3.5.3-1+b2) ... Setting up mailutils (1:3.1.1-1) ... update-alternatives: using /usr/bin/frm.mailutils to provide /usr/bin/frm (frm) in auto mode update-alternatives: using /usr/bin/from.mailutils to provide /usr/bin/from (from) in auto mode update-alternatives: using /usr/bin/messages.mailutils to provide /usr/bin/messages (messages) in auto mode update-alternatives: using /usr/bin/movemail.mailutils to provide /usr/bin/movemail (movemail) in auto mode update-alternatives: using /usr/bin/readmsg.mailutils to provide /usr/bin/readmsg (readmsg) in auto mode update-alternatives: using /usr/bin/dotlock.mailutils to provide /usr/bin/dotlock (dotlock) in auto mode update-alternatives: using /usr/bin/mail.mailutils to provide /usr/bin/mailx (mailx) in auto mode Setting up openmpi-bin (2.0.2-2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up libmime-lite-perl (3.030-2) ... Setting up libdevel-partialdump-perl (0.18-2) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libcupsimage2:amd64 (2.2.1-8+deb9u6) ... Setting up libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Setting up emboss (6.6.0+dfsg-6) ... Setting up x11-xserver-utils (7.7+7+b1) ... Setting up phyml (3:3.2.0+dfsg-7+b1) ... Setting up libgs9:amd64 (9.26a~dfsg-0+deb9u6) ... Setting up libmime-tools-perl (5.508-1) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up hyphy-mpi (2.2.7+dfsg-1+b2) ... Setting up x11-utils (7.7+3+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up ghostscript (9.26a~dfsg-0+deb9u6) ... Setting up libcupsfilters1:amd64 (1.11.6-3+deb9u1) ... Setting up samtools (1.3.1-3) ... Setting up libgvc6 (2.38.0-17) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.1-1) ... Setting up littler (0.3.1-1) ... Setting up r-cran-nnet (7.3-12-1) ... Setting up r-cran-crayon (1.3.2-1) ... Setting up r-cran-gtable (0.2.0-1) ... Setting up r-base-dev (3.3.3-1) ... Setting up r-cran-assertthat (0.1-1) ... Setting up r-cran-rcolorbrewer (1.1-2-1) ... Setting up r-cran-stringi (1.1.2-1) ... Setting up r-cran-spatial (7.3-11-1) ... Setting up r-cran-pkgkitten (0.1.4-1) ... Setting up r-cran-rcpp (0.12.9-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-colorspace (1.3-2-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-plyr (1.8.4-1) ... Setting up r-cran-digest (0.6.11-1) ... Setting up r-cran-magrittr (1.5-3) ... Setting up r-cran-cluster (2.0.5-1) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up graphviz (2.38.0-17) ... Setting up r-cran-boot (1.3-18-2) ... Setting up r-cran-codetools (0.2-15-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-lazyeval (0.2.0-1) ... Setting up r-cran-nlme (3.1.129-1) ... Setting up r-cran-foreign (0.8.67-1) ... Setting up r-cran-stringr (1.1.0-1) ... Setting up r-cran-class (7.3-14-1) ... Setting up r-cran-kernsmooth (2.23-15-2) ... Setting up r-cran-munsell (0.4.3-1) ... Setting up r-cran-reshape2 (1.4.2-1) ... Setting up r-cran-scales (0.4.1-1) ... Setting up r-cran-tibble (1.2-1) ... Setting up r-cran-matrix (1.2-7.1-1) ... Setting up r-cran-mgcv (1.8-16-1) ... Setting up r-cran-ggplot2 (2.2.1-2) ... Setting up r-cran-survival (2.40-1-1) ... Setting up r-cran-rpart (4.1-10-2) ... Setting up r-recommended (3.3.3-1) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.6.96) ... Setting up med-config (3.0.1) ... Adding group `med' (GID 154) ... Done. Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up ruby2.3 (2.3.3-1+deb9u8) ... Setting up ruby (1:2.3.3) ... Setting up libwww-perl (6.15-1) ... Setting up libapache2-mod-perl2 (2.0.10-2+deb9u1) ... Setting up rake (10.5.0-2+deb9u1) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libapache2-reload-perl (0.13-1) ... Setting up libgraph-readwrite-perl (2.09-1) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u8) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libapache-dbi-perl (1.12-1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up libsoap-lite-perl (1.20-1) ... Setting up libxml-xpath-perl (1.40-1) ... Setting up libnet-dbus-perl (1.1.0-4+b1) ... Setting up roary (3.8.0+dfsg-1) ... Setting up libxml-perl (0.08-2) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libxml-dom-xpath-perl (0.14-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'install', 'roary'] 1m33.5s INFO: Running scripts post_install 1m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_install_exceptions'] 1m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_install_exceptions'] 1m33.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 1m35.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 1m35.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpz_cil040 to buster 1m35.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 1m35.3s INFO: Running scripts pre_distupgrade 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_exceptions'] 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_exceptions'] 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'update'] 1m39.8s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 3s (3956 kB/s) Reading package lists... 1m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'update'] 1m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'upgrade'] 2m34.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: exim4 gnupg-l10n tcpd Use 'sudo apt autoremove' to remove them. The following packages have been kept back: amap-align apache2-bin apt bash beignet-opencl-icd binutils bioperl-run bowtie build-essential ca-certificates clustalo coreutils cpp dash dirmngr dpkg e2fslibs e2fsprogs emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light g++ gawk gcc gfortran ghostscript gnupg gnupg-agent gpgv graphviz guile-2.0-libs hmmer hyphy-mpi icu-devtools infernal libace-perl libalgorithm-diff-xs-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg5.0 libatomic1 libbio-perl-run-perl libbit-vector-perl libblas-dev libblas3 libblkid1 libbsd-resource-perl libbsd0 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcilkrts5 libclass-c3-xs-perl libclass-load-xs-perl libclass-xsaccessor-perl libclone-perl libcomerr2 libconvert-binary-c-perl libcups2 libcupsimage2 libcurl3-gnutls libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdevel-caller-perl libdevel-lexalias-perl libdrm-amdgpu1 libdrm2 libedit2 libexpat1 libfabric1 libfcgi-perl libfdisk1 libfile-fcntllock-perl libgcc1 libgd-perl libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls30 libgomp1 libgpg-error0 libgs9 libgs9-common libgsasl7 libgssapi-krb5-2 libgvc6 libhmsbeagle1v5 libhtml-parser-perl libibverbs1 libicu-dev libidn2-0 libio-pty-perl libio-socket-ssl-perl libipc-sharelite-perl libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 liblist-moreutils-perl liblocale-gettext-perl liblog-dispatch-perl liblsan0 libmailutils5 libmoo-perl libmoose-perl libmount1 libmpc3 libmpx2 libncurses5 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-ssleay-perl libossp-uuid-perl libp11-kit0 libpackage-stash-xs-perl libpadwalker-perl libpam-modules libpam-modules-bin libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparams-util-perl libparams-validate-perl libperlio-utf8-strict-perl libpq5 libpsl5 libpython-stdlib libpython2.7 libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libreadline-dev libreadline7 libscalar-list-utils-perl libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++6 libsub-identify-perl libsub-name-perl libsystemd0 libtext-csv-xs-perl libtext-iconv-perl libtiff5 libtinfo-dev libtinfo5 libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libudev1 libunicode-map-perl libuuid1 libvariable-magic-perl libwww-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libxshmfence1 libyaml-libyaml-perl login lynx mailutils mailutils-common make maq mount muscle ncbi-blast+ ncurses-base ncurses-bin openmpi-bin openmpi-common openssl perl perl-base perl-doc perl-tk phyml pinentry-curses prank probalign probcons procps proda psmisc python python-minimal python2.7 python2.7-minimal r-base-core r-base-dev r-cran-assertthat r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-crayon r-cran-dichromat r-cran-digest r-cran-foreign r-cran-ggplot2 r-cran-gtable r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rpart r-cran-scales r-cran-spatial r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-recommended rename roary ruby samtools sysstat t-coffee tigr-glimmer tm-align util-linux x11-utils x11-xserver-utils The following packages will be upgraded: adduser autotools-dev base-files base-passwd bedtools bioperl blast2 blends-common bsdutils bwa bzip2 bzip2-doc cd-hit cdbs clustalw cron dbus debconf debian-archive-keyring debianutils dialign dialign-tx dialign-tx-data diffutils dpkg-dev exonerate fakeroot fasttree file findutils fontconfig fontconfig-config fonts-lato fonts-liberation fonts-noto-mono fsa gnupg-l10n grep gsfonts gzip hostname hyphy-common init-system-helpers kalign krb5-locales libacl1 libalgorithm-diff-perl libann0 libapache-dbi-perl libapache2-reload-perl libapparmor1 libapr1 libarray-compare-perl libassuan0 libattr1 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libbio-asn1-entrezgene-perl libbio-perl-perl libbz2-1.0 libbz2-dev libcairo2 libcap-ng0 libcapture-tiny-perl libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-c3-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libcrypt-rc4-perl libcupsfilters1 libdate-manip-perl libdatrie1 libdb5.3 libdbus-1-3 libdebconfclient0 libdevel-overloadinfo-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdivsufsort3 libdpkg-perl libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libelf1 libenv-path-perl liberror-perl libexception-class-perl libexporter-tiny-perl libfakeroot libffi6 libfile-basedir-perl libfile-mimeinfo-perl libfile-slurp-tiny-perl libfile-slurper-perl libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgc1c2 libgcrypt20 libgd3 libglib2.0-data libgmp10 libgpm2 libgraph-perl libgraphite2-3 libgvpr2 libharfbuzz0b libhogweed4 libhtml-tableextract-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libidn11 libijs-0.35 libio-all-perl libio-stringy-perl libipc-run-perl libipc-shareable-perl libipc-system-simple-perl libjbig2dec0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libkeyutils1 liblcms2-2 libldap-common liblog-log4perl-perl libltdl7 liblwp-protocol-https-perl liblz4-1 liblzma-dev liblzma5 liblzo2-2 libmagic-mgc libmagic1 libmail-sendmail-perl libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmime-types-perl libmodule-runtime-perl libmro-compat-perl libnet-http-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnpth0 libntlm0 libnuma1 libole-storage-lite-perl libopenjp2-7 libossp-uuid16 libpackage-stash-perl libpam-runtime libpam0g libpaper-utils libpaper1 libparse-recdescent-perl libparse-yapp-perl libpathplan4 libpciaccess0 libpcre16-3 libpcre3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpostscript-perl libpsm-infinipath1 librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspiffy-perl libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-file-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl libthai-data libthai0 libtimedate-perl libtk8.6 libtree-dagnode-perl libtry-tiny-perl liburi-perl libwebp6 libwrap0 libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcursor1 libxdamage1 libxdot4 libxft2 libxinerama1 libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-namespacesupport-perl libxml-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxml-xpathengine-perl libxmlrpc-lite-perl libxmu6 libxmuu1 libxslt1.1 libxss1 libxt6 libyaml-0-2 libyaml-perl linux-libc-dev littler lsb-base lynx-common mafft manpages manpages-dev mcl med-config mime-support multiarch-support mummer mustang mysql-common ncbi-blast+-legacy ncbi-data netbase ocl-icd-libopencl1 parallel passwd patch phylip pkg-config poa poppler-data primer3 publicsuffix r-doc-html rake raxml readline-common ruby-did-you-mean ruby-minitest ruby-power-assert ruby-test-unit rubygems-integration sed sensible-utils shared-mime-info sim4 sysvinit-utils tar tcpd tzdata ucf unzip wise wise-data xauth xdg-user-dirs xdg-utils xml-core xz-utils zlib1g zlib1g-dev 326 upgraded, 0 newly installed, 0 to remove and 260 not upgraded. Need to get 76.9 MB of archives. After this operation, 6779 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:3 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:4 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:5 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:6 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:7 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:8 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:9 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:10 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:12 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:13 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:14 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:15 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:26 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get:31 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:33 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:34 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:35 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:37 http://deb.debian.org/debian buster/main amd64 cron amd64 3.0pl1-134+deb10u1 [99.0 kB] Get:38 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:39 http://deb.debian.org/debian buster/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:40 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:45 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:46 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1+deb10u1 [210 kB] Get:47 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:48 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u1 [210 kB] Get:49 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:50 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:51 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:52 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:53 http://deb.debian.org/debian buster/main amd64 dbus amd64 1.12.20-0+deb10u1 [236 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libapparmor1 amd64 2.13.2-10 [94.7 kB] Get:56 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:59 http://deb.debian.org/debian buster/main amd64 krb5-locales all 1.17-3+deb10u4 [95.6 kB] Get:60 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:61 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:62 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:63 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:64 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:65 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:66 http://deb.debian.org/debian buster/main amd64 bedtools amd64 2.27.1+dfsg-4 [593 kB] Get:67 http://deb.debian.org/debian buster/main amd64 bioperl all 1.7.2-3 [418 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libbio-perl-perl all 1.7.2-3 [4553 kB] Get:69 http://deb.debian.org/debian buster/main amd64 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] Get:70 http://deb.debian.org/debian buster/main amd64 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] Get:71 http://deb.debian.org/debian buster/main amd64 blends-common all 0.7.2 [24.7 kB] Get:72 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get:73 http://deb.debian.org/debian buster/main amd64 bzip2-doc all 1.0.6-9.2~deb10u1 [493 kB] Get:74 http://deb.debian.org/debian buster/main amd64 cd-hit amd64 4.6.8-2 [521 kB] Get:75 http://deb.debian.org/debian buster/main amd64 cdbs all 0.4.159 [83.7 kB] Get:76 http://deb.debian.org/debian buster/main amd64 clustalw amd64 2.1+lgpl-6 [282 kB] Get:77 http://deb.debian.org/debian buster/main amd64 dialign amd64 2.2.1-10 [139 kB] Get:78 http://deb.debian.org/debian buster/main amd64 dialign-tx amd64 1.0.2-12 [76.9 kB] Get:79 http://deb.debian.org/debian buster/main amd64 dialign-tx-data all 1.0.2-12 [869 kB] Get:80 http://deb.debian.org/debian buster/main amd64 dpkg-dev all 1.19.8 [1776 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libdpkg-perl all 1.19.8 [1415 kB] Get:82 http://deb.debian.org/debian buster/main amd64 patch amd64 2.7.6-3+deb10u1 [126 kB] Get:83 http://deb.debian.org/debian buster/main amd64 exonerate amd64 2.4.0-4 [1544 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libfakeroot amd64 1.23-1 [45.9 kB] Get:85 http://deb.debian.org/debian buster/main amd64 fakeroot amd64 1.23-1 [85.8 kB] Get:86 http://deb.debian.org/debian buster/main amd64 fasttree amd64 2.1.10-2 [176 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libpng-tools amd64 1.6.36-6 [140 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libpng-dev amd64 1.6.36-6 [300 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:91 http://deb.debian.org/debian buster/main amd64 fonts-liberation all 1:1.07.4-9 [827 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:93 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:94 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:95 http://deb.debian.org/debian buster/main amd64 fonts-noto-mono all 20181227-1 [83.1 kB] Get:96 http://deb.debian.org/debian buster/main amd64 mummer amd64 3.23+dfsg-4 [809 kB] Get:97 http://deb.debian.org/debian buster/main amd64 fsa amd64 1.15.9+dfsg-4 [740 kB] Get:98 http://deb.debian.org/debian buster/main amd64 gnupg-l10n all 2.2.12-1+deb10u2 [1009 kB] Get:99 http://deb.debian.org/debian buster/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3125 kB] Get:100 http://deb.debian.org/debian buster/main amd64 hyphy-common all 2.3.14+dfsg-1 [661 kB] Get:101 http://deb.debian.org/debian buster/main amd64 kalign amd64 1:2.03+20110620-5 [92.9 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libapache2-reload-perl all 0.13-2 [17.0 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libapr1 amd64 1.6.5-1+b1 [102 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libarray-compare-perl all 3.0.2-1 [14.5 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libbio-asn1-entrezgene-perl all 1.720-2 [38.7 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libcarp-clan-perl all 6.07-1 [15.3 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get:125 http://deb.debian.org/debian buster/main amd64 libcgi-fast-perl all 1:2.13-1 [11.4 kB] Get:126 http://deb.debian.org/debian buster/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libclass-c3-perl all 0.34-1 [22.4 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:130 http://deb.debian.org/debian buster/main amd64 libclass-inspector-perl all 1.32-1 [19.1 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libclass-load-perl all 0.25-1 [16.1 kB] Get:135 http://deb.debian.org/debian buster/main amd64 libcrypt-rc4-perl all 2.02-3 [7704 B] Get:136 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libcupsfilters1 amd64 1.21.6-5 [172 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libdate-manip-perl all 6.76-1 [930 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libmro-compat-perl all 0.13-1 [12.2 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libdevel-overloadinfo-perl all 0.005-1 [7212 B] Get:143 http://deb.debian.org/debian buster/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libdevel-partialdump-perl all 0.20-1 [15.3 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libdevel-stacktrace-perl all 2.0300-1 [28.0 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libdevel-symdump-perl all 2.18-3 [17.3 kB] Get:147 http://deb.debian.org/debian buster/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:152 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libenv-path-perl all 0.19-2 [19.5 kB] Get:154 http://deb.debian.org/debian buster/main amd64 liberror-perl all 0.17027-2 [30.9 kB] Get:155 http://deb.debian.org/debian buster/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:159 http://deb.debian.org/debian buster/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:160 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get:161 http://deb.debian.org/debian buster/main amd64 libfile-mimeinfo-perl all 0.29-1 [46.5 kB] Get:162 http://deb.debian.org/debian buster/main amd64 libfile-slurp-tiny-perl all 0.004-1 [7288 B] Get:163 http://deb.debian.org/debian buster/main amd64 libfile-slurper-perl all 0.012-1 [8344 B] Get:164 http://deb.debian.org/debian buster/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libfindbin-libs-perl all 2.190.02-1 [30.3 kB] Get:166 http://deb.debian.org/debian buster/main amd64 libfreezethaw-perl all 0.5001-2 [16.8 kB] Get:167 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:168 http://deb.debian.org/debian buster/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:169 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:170 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:171 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:174 http://deb.debian.org/debian buster/main amd64 libgraph-perl all 1:0.9704-1 [119 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get:177 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:178 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libhtml-tableextract-perl all 2.15-1 [30.2 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:182 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:184 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get:185 http://deb.debian.org/debian buster/main amd64 libhttp-daemon-perl all 6.01-3 [16.6 kB] Get:186 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:187 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:188 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:189 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:190 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:191 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:192 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:193 http://deb.debian.org/debian buster/main amd64 libijs-0.35 amd64 0.35-14 [18.3 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libspiffy-perl all 0.46-1 [25.7 kB] Get:195 http://deb.debian.org/debian buster/main amd64 libio-all-perl all 0.87-1 [66.7 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:197 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:198 http://deb.debian.org/debian buster/main amd64 libipc-shareable-perl all 0.61-2 [32.0 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libjbig2dec0 amd64 0.16-1+deb10u1 [62.2 kB] Get:200 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get:201 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:202 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:203 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:204 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:205 http://deb.debian.org/debian buster/main amd64 liblog-log4perl-perl all 1.49-1 [377 kB] Get:206 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get:207 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:208 http://deb.debian.org/debian buster/main amd64 liblzo2-2 amd64 2.10-0.1 [56.1 kB] Get:209 http://deb.debian.org/debian buster/main amd64 libmail-sendmail-perl all 0.80-1 [25.3 kB] Get:210 http://deb.debian.org/debian buster/main amd64 libmath-derivative-perl all 1.01-1 [8956 B] Get:211 http://deb.debian.org/debian buster/main amd64 libmath-spline-perl all 0.02-2 [7644 B] Get:212 http://deb.debian.org/debian buster/main amd64 libmime-tools-perl all 5.509-1 [212 kB] Get:213 http://deb.debian.org/debian buster/main amd64 libmime-types-perl all 2.17-1 [66.9 kB] Get:214 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:215 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:216 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:217 http://deb.debian.org/debian buster/main amd64 libnpth0 amd64 1.6-1 [18.4 kB] Get:218 http://deb.debian.org/debian buster/main amd64 libntlm0 amd64 1.5-1+deb10u1 [22.7 kB] Get:219 http://deb.debian.org/debian buster/main amd64 libole-storage-lite-perl all 0.19-2+deb10u1 [24.0 kB] Get:220 http://deb.debian.org/debian buster/main amd64 libopenjp2-7 amd64 2.3.0-2+deb10u2 [158 kB] Get:221 http://deb.debian.org/debian buster/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b7 [38.1 kB] Get:222 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:223 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:224 http://deb.debian.org/debian buster/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get:225 http://deb.debian.org/debian buster/main amd64 libparse-yapp-perl all 1.21-2 [46.9 kB] Get:226 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get:227 http://deb.debian.org/debian buster/main amd64 libpostscript-perl all 0.06-3 [25.9 kB] Get:228 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:229 http://deb.debian.org/debian buster/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:230 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:231 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:232 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:233 http://deb.debian.org/debian buster/main amd64 libsasl2-modules amd64 2.1.27+dfsg-1+deb10u2 [104 kB] Get:234 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:235 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:236 http://deb.debian.org/debian buster/main amd64 libxmlrpc-lite-perl all 0.717-2 [22.3 kB] Get:237 http://deb.debian.org/debian buster/main amd64 libtask-weaken-perl all 1.06-1 [9252 B] Get:238 http://deb.debian.org/debian buster/main amd64 libsoap-lite-perl all 1.27-1 [258 kB] Get:239 http://deb.debian.org/debian buster/main amd64 libsort-naturally-perl all 1.03-2 [13.5 kB] Get:240 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:241 http://deb.debian.org/debian buster/main amd64 libstatistics-descriptive-perl all 3.0702-1 [64.8 kB] Get:242 http://deb.debian.org/debian buster/main amd64 libstrictures-perl all 2.000005-1 [18.3 kB] Get:243 http://deb.debian.org/debian buster/main amd64 libsub-uplevel-perl all 0.2800-1 [16.3 kB] Get:244 http://deb.debian.org/debian buster/main amd64 libsvg-perl all 2.84-1 [67.9 kB] Get:245 http://deb.debian.org/debian buster/main amd64 libtree-dagnode-perl all 1.31-1 [61.4 kB] Get:246 http://deb.debian.org/debian buster/main amd64 libsvg-graph-perl all 0.02-3 [114 kB] Get:247 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:248 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:249 http://deb.debian.org/debian buster/main amd64 libtest-deep-perl all 1.128-1 [48.8 kB] Get:250 http://deb.debian.org/debian buster/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:251 http://deb.debian.org/debian buster/main amd64 libtest-differences-perl all 0.65-1 [18.1 kB] Get:252 http://deb.debian.org/debian buster/main amd64 libtest-file-perl all 1.443-1 [20.0 kB] Get:253 http://deb.debian.org/debian buster/main amd64 libtest-output-perl all 1.031-1 [13.0 kB] Get:254 http://deb.debian.org/debian buster/main amd64 libtest-simple-perl all 1.302162-1 [361 kB] Get:255 http://deb.debian.org/debian buster/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:256 http://deb.debian.org/debian buster/main amd64 libtext-csv-perl all 1.99-1 [105 kB] Get:257 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:258 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:259 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get:260 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:261 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:262 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:263 http://deb.debian.org/debian buster/main amd64 libwrap0 amd64 7.6.q-28 [58.7 kB] Get:264 http://deb.debian.org/debian buster/main amd64 tcpd amd64 7.6.q-28 [23.8 kB] Get:265 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:266 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get:267 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:268 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:269 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:270 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:271 http://deb.debian.org/debian buster/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get:272 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:273 http://deb.debian.org/debian buster/main amd64 libxcursor1 amd64 1:1.1.15-2 [36.6 kB] Get:274 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:275 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get:276 http://deb.debian.org/debian buster/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get:277 http://deb.debian.org/debian buster/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:278 http://deb.debian.org/debian buster/main amd64 libxml-dom-xpath-perl all 0.14-3 [9066 B] Get:279 http://deb.debian.org/debian buster/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:280 http://deb.debian.org/debian buster/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:281 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:282 http://deb.debian.org/debian buster/main amd64 libxml-filter-buffertext-perl all 1.01-6 [6916 B] Get:283 http://deb.debian.org/debian buster/main amd64 libxml-perl all 0.08-3 [93.3 kB] Get:284 http://deb.debian.org/debian buster/main amd64 libxml-sax-expat-perl all 0.51-1 [12.0 kB] Get:285 http://deb.debian.org/debian buster/main amd64 libxml-sax-writer-perl all 0.57-1 [22.6 kB] Get:286 http://deb.debian.org/debian buster/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:287 http://deb.debian.org/debian buster/main amd64 libxml-twig-perl all 1:3.50-1.1 [179 kB] Get:288 http://deb.debian.org/debian buster/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get:289 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:290 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:291 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:292 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get:293 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:294 http://deb.debian.org/debian buster/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:295 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:296 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get:297 http://deb.debian.org/debian buster/main amd64 lynx-common all 2.8.9rel.1-3+deb10u1 [1212 kB] Get:298 http://deb.debian.org/debian buster/main amd64 mafft amd64 7.407-2 [999 kB] Get:299 http://deb.debian.org/debian buster/main amd64 mcl amd64 1:14-137+ds-3 [623 kB] Get:300 http://deb.debian.org/debian buster/main amd64 med-config all 3.3 [18.7 kB] Get:301 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:302 http://deb.debian.org/debian buster/main amd64 mustang amd64 3.2.3-3 [105 kB] Get:303 http://deb.debian.org/debian buster/main amd64 mysql-common all 5.8+1.0.5 [7324 B] Get:304 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:305 http://deb.debian.org/debian buster/main amd64 parallel all 20161222-1.1 [306 kB] Get:306 http://deb.debian.org/debian buster/main amd64 phylip amd64 1:3.697+dfsg-1 [910 kB] Get:307 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:308 http://deb.debian.org/debian buster/main amd64 poa amd64 2.0+20060928-7 [53.0 kB] Get:309 http://deb.debian.org/debian buster/main amd64 primer3 amd64 2.4.0-2 [180 kB] Get:310 http://deb.debian.org/debian buster/main amd64 publicsuffix all 20220811.1734-0+deb10u1 [127 kB] Get:311 http://deb.debian.org/debian buster/main amd64 r-doc-html all 3.5.2-1 [563 kB] Get:312 http://deb.debian.org/debian buster/main amd64 rake all 12.3.1-3+deb10u1 [67.1 kB] Get:313 http://deb.debian.org/debian buster/main amd64 raxml amd64 8.2.12+dfsg-1 [1275 kB] Get:314 http://deb.debian.org/debian buster/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get:315 http://deb.debian.org/debian buster/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get:316 http://deb.debian.org/debian buster/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get:317 http://deb.debian.org/debian buster/main amd64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get:318 http://deb.debian.org/debian buster/main amd64 rubygems-integration all 1.11+deb10u1 [5212 B] Get:319 http://deb.debian.org/debian buster/main amd64 sim4 amd64 0.0.20121010-5 [396 kB] Get:320 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:321 http://deb.debian.org/debian buster/main amd64 wise amd64 2.4.1-21 [978 kB] Get:322 http://deb.debian.org/debian buster/main amd64 wise-data all 2.4.1-21 [109 kB] Get:323 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] Get:324 http://deb.debian.org/debian buster/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:325 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get:326 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.9 MB in 22s (3382 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43104 files and directories currently installed.) Preparing to unpack .../base-files_10.3+deb10u13_amd64.deb ... Unpacking base-files (10.3+deb10u13) over (9.9+deb9u13) ... Setting up base-files (10.3+deb10u13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43087 files and directories currently installed.) Preparing to unpack .../libpam0g_1.3.1-5_amd64.deb ... Unpacking libpam0g:amd64 (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam0g:amd64 (1.3.1-5) ... Checking for services that may need to be restarted...Checking init scripts... Restarting services possibly affected by the upgrade: /var/lib/dpkg/info/libpam0g:amd64.postinst: 139: /var/lib/dpkg/info/libpam0g:amd64.postinst: runlevel: not found exim4: stopping...starting...done. cron: stopping...starting...done. Services restarted successfully. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43087 files and directories currently installed.) Preparing to unpack .../libpcre3-dev_2%3a8.39-12_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.39-12) over (2:8.39-3) ... Preparing to unpack .../libpcre16-3_2%3a8.39-12_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.39-12) over (2:8.39-3) ... Preparing to unpack .../libpcre32-3_2%3a8.39-12_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.39-12) over (2:8.39-3) ... Preparing to unpack .../libpcrecpp0v5_2%3a8.39-12_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.39-12) over (2:8.39-3) ... Preparing to unpack .../libpcre3_2%3a8.39-12_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-12) over (2:8.39-3) ... Setting up libpcre3:amd64 (2:8.39-12) ... (Reading database ... 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Setting up libfile-which-perl (1.23-1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up liberror-perl (0.17027-2) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libgpm2:amd64 (1.20.7-5) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u7) ... Setting up libgraph-perl (1:0.9704-1) ... Setting up poppler-data (0.4.9-2) ... Setting up libbio-asn1-entrezgene-perl (1.720-2) ... Setting up libfreezethaw-perl (0.5001-2) ... Setting up libpng-tools (1.6.36-6) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up tzdata (2021a-0+deb10u6) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 26 12:40:05 UTC 2022. Universal Time is now: Sat Nov 26 12:40:05 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsvg-perl (2.84-1) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up mummer (3.23+dfsg-4) ... Setting up mysql-common (5.8+1.0.5) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Setting up blast2 (1:2.8.1-1+deb10u1) ... Setting up libarray-compare-perl (3.0.2-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up unzip (6.0-23+deb10u2) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Setting up dialign (2.2.1-10) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up exonerate (2.4.0-4) ... Setting up libcarp-clan-perl (6.07-1) ... Setting up libdpkg-perl (1.19.8) ... Setting up libmath-derivative-perl (1.01-1) ... Setting up littler (0.3.6-1) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libyaml-perl (1.27-1) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Processing triggers for menu (2.1.47+b1) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libipc-shareable-perl (0.61-2) ... Processing triggers for sgml-base (1.29) ... Setting up libtest-simple-perl (1.302162-1) ... Setting up fonts-liberation (1:1.07.4-9) ... Setting up ucf (3.0038+nmu1) ... Setting up libtest-file-perl (1.443-1) ... Setting up libxml-perl (0.08-3) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libtasn1-6:amd64 (4.13-3) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up fonts-noto-mono (20181227-1) ... Setting up gnupg-l10n (2.2.12-1+deb10u2) ... Setting up bzip2 (1.0.6-9.2~deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up dialign-tx-data (1.0.2-12) ... Setting up lsb-base (10.2019051400) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up fsa (1.15.9+dfsg-4) ... Setting up libmime-types-perl (2.17-1) ... Setting up fonts-lato (2.0-2) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up sim4 (0.0.20121010-5) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up raxml (8.2.12+dfsg-1) ... Setting up libenv-path-perl (0.19-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up pkg-config (0.29-6) ... Setting up libjbig2dec0:amd64 (0.16-1+deb10u1) ... Setting up libstrictures-perl (2.000005-1) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Setting up libntlm0:amd64 (1.5-1+deb10u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up patch (2.7.6-3+deb10u1) ... Setting up libglib2.0-data (2.58.3-2+deb10u3) ... Setting up libmail-sendmail-perl (0.80-1) ... Setting up krb5-locales (1.17-3+deb10u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up wise-data (2.4.1-21) ... Setting up libsort-naturally-perl (1.03-2) ... Setting up publicsuffix (20220811.1734-0+deb10u1) ... Setting up fasttree (2.1.10-2) ... Setting up autotools-dev (20180224.1) ... Setting up bzip2-doc (1.0.6-9.2~deb10u1) ... Setting up libapparmor1:amd64 (2.13.2-10) ... Setting up liburi-perl (1.76-1) ... Setting up xz-utils (5.2.4-1+deb10u1) ... Setting up primer3 (2.4.0-2) ... Setting up libfakeroot:amd64 (1.23-1) ... Setting up wise (2.4.1-21) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up bioperl (1.7.2-3) ... Setting up mcl (1:14-137+ds-3) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libijs-0.35:amd64 (0.35-14) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libdate-manip-perl (6.76-1) ... Setting up libalgorithm-diff-perl (1.19.03-2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up rubygems-integration (1.11+deb10u1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up shared-mime-info (1.10-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-12) ... Setting up libpcre32-3:amd64 (2:8.39-12) ... Setting up libnet-http-perl (6.18-1) ... Setting up libapache2-reload-perl (0.13-2) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libcrypt-rc4-perl (2.02-3) ... Setting up poa (2.0+20060928-7) ... Setting up libffi6:amd64 (3.2.1-9) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up libpcre16-3:amd64 (2:8.39-12) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up libthai-data (0.1.28-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Setting up liblzma-dev:amd64 (5.2.4-1+deb10u1) ... Setting up xml-core (0.18+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libsub-uplevel-perl (0.2800-1) ... Setting up ruby-minitest (5.11.3-1) ... Setting up lynx-common (2.8.9rel.1-3+deb10u1) ... Installing new version of config file /etc/lynx/lynx.cfg ... Setting up mustang (3.2.3-3) ... Setting up clustalw (2.1+lgpl-6) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libtext-csv-perl (1.99-1) ... Setting up manpages-dev (4.16-2) ... Setting up libfile-mimeinfo-perl (0.29-1) ... Setting up cron (3.0pl1-134+deb10u1) ... Installing new version of config file /etc/crontab ... Installing new version of config file /etc/init.d/cron ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libpostscript-perl (0.06-3) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libtree-dagnode-perl (1.31-1) ... Setting up xdg-user-dirs (0.17-2) ... Removing obsolete conffile /etc/X11/Xsession.d/60xdg-user-dirs-update ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libfile-slurper-perl (0.012-1) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up hyphy-common (2.3.14+dfsg-1) ... Setting up libclass-inspector-perl (1.32-1) ... Setting up liblzo2-2:amd64 (2.10-0.1) ... Setting up r-doc-html (3.5.2-1) ... Setting up libclass-c3-perl (0.34-1) ... Setting up libwrap0:amd64 (7.6.q-28) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libole-storage-lite-perl (0.19-2+deb10u1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libspiffy-perl (0.46-1) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libmime-tools-perl (5.509-1) ... Setting up libtask-weaken-perl (1.06-1) ... Setting up netbase (5.6) ... Installing new version of config file /etc/services ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libpackage-stash-perl (0.38-1) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libpaper1:amd64 (1.1.28) ... Setting up libpaper-utils (1.1.28) ... Setting up libpcre3-dev:amd64 (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libmath-spline-perl (0.02-2) ... Setting up libexception-class-perl (1.44-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up libtest-output-perl (1.031-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up dialign-tx (1.0.2-12) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libhttp-daemon-perl (6.01-3) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libdevel-overloadinfo-perl (0.005-1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up fakeroot (1.23-1) ... Setting up tcpd (7.6.q-28) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libdevel-partialdump-perl (0.20-1) ... Setting up libcgi-fast-perl (1:2.13-1) ... Setting up libio-all-perl (0.87-1) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... Setting up libclass-load-perl (0.25-1) ... Setting up libcupsfilters1:amd64 (1.21.6-5) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up dpkg-dev (1.19.8) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up libxml-filter-buffertext-perl (1.01-6) ... Setting up libxml-dom-xpath-perl (0.14-3) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libpng-dev:amd64 (1.6.36-6) ... Setting up dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libxml-sax-writer-perl (0.57-1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libsvg-graph-perl (0.02-3) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libtest-differences-perl (0.65-1) ... Setting up libsoap-lite-perl (1.27-1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up xauth (1:1.0.10-1) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libxmlrpc-lite-perl (0.717-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libxcb-shape0:amd64 (1.13.1-2) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.7.2) ... Setting up med-config (3.3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... 2m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'upgrade'] 2m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-yf', 'dist-upgrade'] 4m48.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: cdbs exim4 gnupg-agent guile-2.0-libs libann0 libblas-common libgdbm3 libgl1-mesa-glx libhmsbeagle1v5 libhpdf-2.2.1 libhts1 libicu57 libopenmpi2 libparams-validate-perl libperl5.24 libprocps6 libruby2.3 libssl1.0.2 libtinfo-dev libtxc-dxtn-s2tc libunistring0 rename ruby2.3 sgml-base tcpd xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libcurl3 libllvm3.9 libmariadbclient18 libsensors4 The following NEW packages will be installed: autoconf automake binutils-common binutils-x86-64-linux-gnu cpp-8 cwltool e2fsprogs-l10n fdisk fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++-8 gcc-7-base gcc-8 gcc-8-base gdal-data gfortran-8 gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm guile-2.2-libs ibverbs-providers libaec0 libarmadillo9 libarpack2 libasan5 libb-hooks-op-check-perl libbinutils libbrotli1 libc-ares2 libcaf-openmpi-3 libcharls2 libcoarrays-dev libcoarrays-openmpi-dev libcom-err2 libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdeflate0 libdevel-callchecker-perl libdigest-md5-file-perl libdrm-common libdynaloader-functions-perl libegl-mesa0 libegl1 libepsilon1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libext2fs2 libfreexl1 libfyba0 libgbm1 libgcc-8-dev libgdal20 libgdbm-compat4 libgdbm6 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran-8-dev libgfortran5 libgif7 libgl1 libglvnd0 libglx-mesa0 libglx0 libgnutls-dane0 libgpg-error-l10n libhdf4-0-alt libhdf5-103 libhpdf-2.3.0 libhts2 libhwloc-dev libibverbs-dev libicu63 libimagequant0 libisl19 libjansson4 libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libjson-c3 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 liblab-gamut1 libllvm7 liblmdb0 libltdl-dev liblua5.1-0 libmariadb3 libmbedcrypto3 libmbedtls12 libmbedx509-0 libminizip1 libmpdec2 libmpfr6 libnamespace-autoclean-perl libncurses-dev libncurses6 libncursesw6 libnetcdf13 libnl-3-dev libnl-route-3-dev libnode64 libnspr4 libnss3 libnuma-dev libodbc1 libogdi3.2 libopenmpi-dev libopenmpi3 libparams-validationcompiler-perl libperl5.28 libpmix2 libpoppler82 libpopt0 libprocps7 libproj13 libpsm2-2 libpython2-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libreadonly-perl libref-util-perl libref-util-xs-perl libruby2.5 libseccomp2 libsensors-config libsensors5 libspatialite7 libspecio-perl libstdc++-8-dev libsub-quote-perl libsuperlu5 libsz2 libtbb2 libtinfo6 libtool libubsan1 libunbound8 libunistring2 liburiparser1 libuv1 libwayland-client0 libwayland-server0 libwebpdemux2 libwebpmux3 libxcb-xfixes0 libxerces-c3.2 libzstd1 m4 mariadb-common ncoils node-highlight.js node-normalize.css nodejs nodejs-doc odbcinst odbcinst1debian2 openssh-client pandoc pandoc-data perl-modules-5.28 proj-bin proj-data python2 python2-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal r-cran-abind r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-blob r-cran-cli r-cran-data.table r-cran-dbi r-cran-dbitest r-cran-desc r-cran-domc r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-filehash r-cran-foreach r-cran-glue r-cran-hexbin r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-iterators r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-markdown r-cran-memoise r-cran-mime r-cran-mockery r-cran-mockr r-cran-multicore r-cran-pillar r-cran-pkgconfig r-cran-png r-cran-praise r-cran-prettyunits r-cran-promises r-cran-purrr r-cran-r6 r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-testit r-cran-testthat r-cran-tidyselect r-cran-tikzdevice r-cran-tinytex r-cran-utf8 r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml2 r-cran-xtable r-cran-yaml ruby-xmlrpc ruby2.5 The following packages will be upgraded: amap-align apache2-bin apt bash beignet-opencl-icd binutils bioperl-run bowtie build-essential ca-certificates clustalo coreutils cpp dash dirmngr dpkg e2fslibs e2fsprogs emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light g++ gawk gcc gfortran ghostscript gnupg gnupg-agent gpgv graphviz guile-2.0-libs hmmer hyphy-mpi icu-devtools infernal libace-perl libalgorithm-diff-xs-perl libapache2-mod-perl2 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg5.0 libatomic1 libbio-perl-run-perl libbit-vector-perl libblas-dev libblas3 libblkid1 libbsd-resource-perl libbsd0 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcilkrts5 libclass-c3-xs-perl libclass-load-xs-perl libclass-xsaccessor-perl libclone-perl libcomerr2 libconvert-binary-c-perl libcups2 libcupsimage2 libcurl3-gnutls libdate-calc-xs-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdevel-caller-perl libdevel-lexalias-perl libdrm-amdgpu1 libdrm2 libedit2 libexpat1 libfabric1 libfcgi-perl libfdisk1 libfile-fcntllock-perl libgcc1 libgd-perl libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgnutls30 libgomp1 libgpg-error0 libgs9 libgs9-common libgsasl7 libgssapi-krb5-2 libgvc6 libhmsbeagle1v5 libhtml-parser-perl libibverbs1 libicu-dev libidn2-0 libio-pty-perl libio-socket-ssl-perl libipc-sharelite-perl libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 liblist-moreutils-perl liblocale-gettext-perl liblog-dispatch-perl liblsan0 libmailutils5 libmoo-perl libmoose-perl libmount1 libmpc3 libmpx2 libncurses5 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-ssleay-perl libossp-uuid-perl libp11-kit0 libpackage-stash-xs-perl libpadwalker-perl libpam-modules libpam-modules-bin libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparams-util-perl libparams-validate-perl libperlio-utf8-strict-perl libpq5 libpsl5 libpython-stdlib libpython2.7 libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libreadline-dev libreadline7 libscalar-list-utils-perl libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++6 libsub-identify-perl libsub-name-perl libsystemd0 libtext-csv-xs-perl libtext-iconv-perl libtiff5 libtinfo-dev libtinfo5 libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libudev1 libunicode-map-perl libuuid1 libvariable-magic-perl libwww-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml2 libxshmfence1 libyaml-libyaml-perl login lynx mailutils mailutils-common make maq mount muscle ncbi-blast+ ncurses-base ncurses-bin openmpi-bin openmpi-common openssl perl perl-base perl-doc perl-tk phyml pinentry-curses prank probalign probcons procps proda psmisc python python-minimal python2.7 python2.7-minimal r-base-core r-base-dev r-cran-assertthat r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-crayon r-cran-dichromat r-cran-digest r-cran-foreign r-cran-ggplot2 r-cran-gtable r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rpart r-cran-scales r-cran-spatial r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-recommended rename roary ruby samtools sysstat t-coffee tigr-glimmer tm-align util-linux x11-utils x11-xserver-utils 260 upgraded, 304 newly installed, 4 to remove and 0 not upgraded. Need to get 502 MB of archives. After this operation, 891 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:5 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:17 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get:24 http://deb.debian.org/debian buster/main amd64 sysstat amd64 12.0.3-2 [562 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:31 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get:32 http://deb.debian.org/debian buster/main amd64 x11-utils amd64 7.7+4 [202 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-glx amd64 18.3.6-2+deb10u1 [47.4 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:39 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:42 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:43 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:47 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:48 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:55 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:56 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:57 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:58 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:59 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:60 http://deb.debian.org/debian buster/main amd64 perl-doc all 5.28.1-6+deb10u1 [7654 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b2 [38.0 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libscalar-list-utils-perl amd64 1:1.50-1+b1 [56.4 kB] Get:63 http://deb.debian.org/debian buster/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libdbi-perl amd64 1.642-1+deb10u2 [775 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libfcgi-perl amd64 0.78-2+b3 [39.0 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:72 http://deb.debian.org/debian buster/main amd64 mariadb-common all 1:10.3.34-0+deb10u1 [33.0 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:74 http://deb.debian.org/debian buster/main amd64 guile-2.2-libs amd64 2.2.4+1-2+deb10u1 [4968 kB] Get:75 http://deb.debian.org/debian buster/main amd64 mailutils amd64 1:3.5-4 [585 kB] Get:76 http://deb.debian.org/debian buster/main amd64 mailutils-common all 1:3.5-4 [689 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libmailutils5 amd64 1:3.5-4 [880 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1 [340 kB] Get:79 http://deb.debian.org/debian buster/main amd64 emboss-data all 6.6.0+dfsg-7 [61.1 MB] Get:80 http://deb.debian.org/debian buster/main amd64 emboss amd64 6.6.0+dfsg-7+b1 [1073 kB] Get:81 http://deb.debian.org/debian buster/main amd64 emboss-lib amd64 6.6.0+dfsg-7+b1 [2786 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libmariadb3 amd64 1:10.3.34-0+deb10u1 [173 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libdbd-mysql-perl amd64 4.050-2 [121 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libparams-util-perl amd64 1.07-3+b4 [23.0 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libpadwalker-perl amd64 2.3-1+b1 [20.1 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libconvert-binary-c-perl amd64 0.78-1+b4 [272 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:89 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:93 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:94 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:95 http://deb.debian.org/debian buster/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libbit-vector-perl amd64 7.4-1+b5 [146 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libclass-load-xs-perl amd64 0.10-1+b3 [14.8 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libace-perl amd64 1.92-8+b1 [287 kB] Get:101 http://deb.debian.org/debian buster/main amd64 perl-tk amd64 1:804.033-2+b3 [1952 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libtext-iconv-perl amd64 1.7-5+b7 [15.4 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libxml-libxslt-perl amd64 1.96-1+b1 [47.5 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libbsd-resource-perl amd64 1.2911-1+b3 [33.8 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-xs-perl amd64 0.04-5+b1 [11.8 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libpackage-stash-xs-perl amd64 0.29-1 [19.8 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libfile-fcntllock-perl amd64 0.22-3+b5 [35.4 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libparams-validate-perl amd64 1.29-1+b1 [67.6 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libgd-perl amd64 2.71-2 [140 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libdevel-caller-perl amd64 2.06-2+b1 [12.1 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libunicode-map-perl amd64 0.112-12+b1 [145 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libsub-identify-perl amd64 0.14-1+b1 [12.0 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libdbd-pg-perl amd64 3.7.4-3 [207 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libtype-tiny-xs-perl amd64 0.014-1+b1 [24.4 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libnet-dbus-perl amd64 1.1.0-5+b1 [181 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libperlio-utf8-strict-perl amd64 0.007-2+b1 [11.7 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libdate-calc-xs-perl amd64 6.4-1+b4 [55.1 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b7 [28.7 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libmoose-perl amd64 2.2011-1+b1 [805 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+deb10u1 [308 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libvariable-magic-perl amd64 0.62-1+b1 [45.9 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libtext-csv-xs-perl amd64 1.38-1 [129 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:125 http://deb.debian.org/debian buster/main amd64 libapache2-mod-perl2 amd64 2.0.10-3 [885 kB] Get:126 http://deb.debian.org/debian buster/main amd64 libdbd-sqlite3-perl amd64 1.62-3 [177 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libipc-sharelite-perl amd64 0.17-4+b3 [24.6 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libclass-c3-xs-perl amd64 0.14-1+b3 [16.9 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libdevel-lexalias-perl amd64 0.05-2+b1 [9068 B] Get:130 http://deb.debian.org/debian buster/main amd64 libncurses5-dev amd64 6.1+20181013-2+deb10u2 [948 B] Get:131 http://deb.debian.org/debian buster/main amd64 libtinfo-dev amd64 6.1+20181013-2+deb10u2 [940 B] Get:132 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:135 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:136 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libgsasl7 amd64 1.8.0-8+deb10u1 [207 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:141 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get:143 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:145 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:147 http://deb.debian.org/debian buster/main amd64 libpq5 amd64 11.16-0+deb10u1 [172 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:150 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:151 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:152 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libaprutil1-ldap amd64 1.6.1-4 [16.8 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-4 [18.7 kB] Get:155 http://deb.debian.org/debian buster/main amd64 libaprutil1 amd64 1.6.1-4 [91.8 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:159 http://deb.debian.org/debian buster/main amd64 r-cran-colorspace amd64 1.4-0+dfsg-1 [1580 kB] Get:160 http://deb.debian.org/debian buster/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get:161 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get:162 http://deb.debian.org/debian buster/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get:163 http://deb.debian.org/debian buster/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get:164 http://deb.debian.org/debian buster/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libblas-dev amd64 3.8.0-2 [154 kB] Get:166 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:167 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:168 http://deb.debian.org/debian buster/main amd64 liblapack-dev amd64 3.8.0-2 [2140 kB] Get:169 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:170 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get:171 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:172 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get:173 http://deb.debian.org/debian buster/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get:174 http://deb.debian.org/debian buster/main amd64 r-cran-cluster amd64 2.0.7-1-1+b3 [531 kB] Get:175 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:176 http://deb.debian.org/debian buster/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get:177 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get:178 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get:179 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get:180 http://deb.debian.org/debian buster/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get:181 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get:182 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get:183 http://deb.debian.org/debian buster/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get:184 http://deb.debian.org/debian buster/main amd64 r-cran-survival amd64 2.43-3-1 [4637 kB] Get:185 http://deb.debian.org/debian buster/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get:186 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get:187 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:188 http://deb.debian.org/debian buster/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get:189 http://deb.debian.org/debian buster/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get:190 http://deb.debian.org/debian buster/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get:191 http://deb.debian.org/debian buster/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get:192 http://deb.debian.org/debian buster/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get:193 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get:194 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get:195 http://deb.debian.org/debian buster/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get:196 http://deb.debian.org/debian buster/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get:197 http://deb.debian.org/debian buster/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get:198 http://deb.debian.org/debian buster/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get:199 http://deb.debian.org/debian buster/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get:200 http://deb.debian.org/debian buster/main amd64 r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get:201 http://deb.debian.org/debian buster/main amd64 r-cran-spatial amd64 7.3-11-2+b2 [127 kB] Get:202 http://deb.debian.org/debian buster/main amd64 r-cran-rpart amd64 4.1-13-1+b1 [890 kB] Get:203 http://deb.debian.org/debian buster/main amd64 r-cran-nnet amd64 7.3-12-2+b2 [111 kB] Get:204 http://deb.debian.org/debian buster/main amd64 r-cran-kernsmooth amd64 2.23-15-3+b4 [90.6 kB] Get:205 http://deb.debian.org/debian buster/main amd64 r-cran-class amd64 7.3-15-1 [86.6 kB] Get:206 http://deb.debian.org/debian buster/main amd64 r-cran-foreign amd64 0.8.71-1 [245 kB] Get:207 http://deb.debian.org/debian buster/main amd64 r-cran-codetools all 0.2-16-1 [90.1 kB] Get:208 http://deb.debian.org/debian buster/main amd64 r-cran-boot all 1.3-20-2 [619 kB] Get:209 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:210 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:211 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:212 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:213 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:214 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:215 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:216 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:217 http://deb.debian.org/debian buster/main amd64 libjansson4 amd64 2.12-1 [38.0 kB] Get:218 http://deb.debian.org/debian buster/main amd64 apache2-bin amd64 2.4.38-3+deb10u8 [1309 kB] Get:219 http://deb.debian.org/debian buster/main amd64 libncurses5 amd64 6.1+20181013-2+deb10u2 [96.2 kB] Get:220 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:221 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:222 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:223 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:224 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:225 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:226 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:227 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:228 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:229 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:230 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:231 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:232 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:233 http://deb.debian.org/debian buster/main amd64 gawk amd64 1:4.2.1+dfsg-1 [660 kB] Get:234 http://deb.debian.org/debian buster/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:235 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:236 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:237 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:238 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:239 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:240 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:241 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:242 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:243 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:244 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:245 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:246 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get:247 http://deb.debian.org/debian buster/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-1 [131 kB] Get:248 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:249 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get:250 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get:251 http://deb.debian.org/debian buster/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get:252 http://deb.debian.org/debian buster/main amd64 libgbm1 amd64 18.3.6-2+deb10u1 [67.8 kB] Get:253 http://deb.debian.org/debian buster/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get:254 http://deb.debian.org/debian buster/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get:255 http://deb.debian.org/debian buster/main amd64 libegl-mesa0 amd64 18.3.6-2+deb10u1 [135 kB] Get:256 http://deb.debian.org/debian buster/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get:257 http://deb.debian.org/debian buster/main amd64 beignet-opencl-icd amd64 1.3.2-6+b10 [14.5 MB] Get:258 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:259 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:260 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:261 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:262 http://deb.debian.org/debian buster/main amd64 bioperl-run all 1.7.2-4 [45.2 kB] Get:263 http://deb.debian.org/debian buster/main amd64 libbio-perl-run-perl all 1.7.2-4 [748 kB] Get:264 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:265 http://deb.debian.org/debian buster/main amd64 libtbb2 amd64 2018~U6-4 [147 kB] Get:266 http://deb.debian.org/debian buster/main amd64 bowtie amd64 1.2.2+dfsg-4 [1670 kB] Get:267 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:268 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:269 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:270 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:271 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:272 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:273 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:274 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:275 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:276 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:277 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:278 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:279 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:280 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:281 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:282 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:283 http://deb.debian.org/debian buster/main amd64 make amd64 4.2.1-1.2 [341 kB] Get:284 http://deb.debian.org/debian buster/main amd64 build-essential amd64 12.6 [7576 B] Get:285 http://deb.debian.org/debian buster/main amd64 clustalo amd64 1.2.4-2 [265 kB] Get:286 http://deb.debian.org/debian buster/main amd64 python3-typed-ast amd64 1.3.1-1 [138 kB] Get:287 http://deb.debian.org/debian buster/main amd64 python3-mypy-extensions all 0.4.1-1 [5234 B] Get:288 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get:289 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:290 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:291 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:292 http://deb.debian.org/debian buster/main amd64 python3-mypy all 0.670-2 [781 kB] Get:293 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:294 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:295 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u4 [1163 kB] Get:296 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:297 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get:298 http://deb.debian.org/debian buster/main amd64 python3-isodate all 0.6.0-1 [24.9 kB] Get:299 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:300 http://deb.debian.org/debian buster/main amd64 python3-rdflib all 4.2.2-2 [258 kB] Get:301 http://deb.debian.org/debian buster/main amd64 python3-prov all 1.5.2-1 [94.4 kB] Get:302 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:303 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:304 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:305 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:306 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:307 http://deb.debian.org/debian buster/main amd64 python3-ruamel.yaml amd64 0.15.34-1+b1 [248 kB] Get:308 http://deb.debian.org/debian buster/main amd64 python3-cachecontrol all 0.11.7-1 [15.2 kB] Get:309 http://deb.debian.org/debian buster/main amd64 python3-lockfile all 1:0.12.2-2 [17.1 kB] Get:310 http://deb.debian.org/debian buster/main amd64 python3-mistune all 0.8.4-1 [16.1 kB] Get:311 http://deb.debian.org/debian buster/main amd64 python3-rdflib-jsonld all 0.4.0-4 [12.3 kB] Get:312 http://deb.debian.org/debian buster/main amd64 python3-typing-extensions all 3.7.2-1 [23.0 kB] Get:313 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:314 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:315 http://deb.debian.org/debian buster/main amd64 python3-schema-salad all 3.0.20181206233650-2 [272 kB] Get:316 http://deb.debian.org/debian buster/main amd64 python3-shellescape all 3.4.1-3 [4800 B] Get:317 http://deb.debian.org/debian buster/main amd64 cwltool all 1.0.20181217162649+dfsg-10 [176 kB] Get:318 http://deb.debian.org/debian buster/main amd64 dirmngr amd64 2.2.12-1+deb10u2 [712 kB] Get:319 http://deb.debian.org/debian buster/main amd64 gnupg all 2.2.12-1+deb10u2 [715 kB] Get:320 http://deb.debian.org/debian buster/main amd64 gnupg-agent all 2.2.12-1+deb10u2 [393 kB] Get:321 http://deb.debian.org/debian buster/main amd64 gpgconf amd64 2.2.12-1+deb10u2 [510 kB] Get:322 http://deb.debian.org/debian buster/main amd64 pinentry-curses amd64 1.1.0-2 [64.5 kB] Get:323 http://deb.debian.org/debian buster/main amd64 gpg-agent amd64 2.2.12-1+deb10u2 [617 kB] Get:324 http://deb.debian.org/debian buster/main amd64 gnupg-utils amd64 2.2.12-1+deb10u2 [861 kB] Get:325 http://deb.debian.org/debian buster/main amd64 gpg amd64 2.2.12-1+deb10u2 [865 kB] Get:326 http://deb.debian.org/debian buster/main amd64 gpg-wks-client amd64 2.2.12-1+deb10u2 [485 kB] Get:327 http://deb.debian.org/debian buster/main amd64 gpg-wks-server amd64 2.2.12-1+deb10u2 [478 kB] Get:328 http://deb.debian.org/debian buster/main amd64 gpgsm amd64 2.2.12-1+deb10u2 [604 kB] Get:329 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:330 http://deb.debian.org/debian buster/main amd64 exim4 all 4.92-8+deb10u6 [7168 B] Get:331 http://deb.debian.org/debian buster/main amd64 exim4-daemon-light amd64 4.92-8+deb10u6 [584 kB] Get:332 http://deb.debian.org/debian buster/main amd64 exim4-base amd64 4.92-8+deb10u6 [1137 kB] Get:333 http://deb.debian.org/debian buster/main amd64 exim4-config all 4.92-8+deb10u6 [324 kB] Get:334 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:335 http://deb.debian.org/debian buster/main amd64 libunbound8 amd64 1.9.0-2+deb10u2 [462 kB] Get:336 http://deb.debian.org/debian buster/main amd64 libgnutls-dane0 amd64 3.6.7-4+deb10u8 [318 kB] Get:337 http://deb.debian.org/debian buster/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB] Get:338 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:339 http://deb.debian.org/debian buster/main amd64 gcc-7-base amd64 7.4.0-6 [190 kB] Get:340 http://deb.debian.org/debian buster/main amd64 gdal-data all 2.4.0+dfsg-1 [744 kB] Get:341 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get:342 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get:343 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get:344 http://deb.debian.org/debian buster/main amd64 ghostscript amd64 9.27~dfsg-2+deb10u5 [95.0 kB] Get:345 http://deb.debian.org/debian buster/main amd64 libgs9 amd64 9.27~dfsg-2+deb10u5 [2198 kB] Get:346 http://deb.debian.org/debian buster/main amd64 libgs9-common all 9.27~dfsg-2+deb10u5 [5136 kB] Get:347 http://deb.debian.org/debian buster/main amd64 libcupsimage2 amd64 2.2.10-6+deb10u6 [133 kB] Get:348 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u6 [325 kB] Get:349 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get:350 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get:351 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get:352 http://deb.debian.org/debian buster/main amd64 guile-2.0-libs amd64 2.0.13+1-5.1 [2232 kB] Get:353 http://deb.debian.org/debian buster/main amd64 hmmer amd64 3.2.1+dfsg-1 [1169 kB] Get:354 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:355 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:356 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:357 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:358 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:359 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:360 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:361 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get:362 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get:363 http://deb.debian.org/debian buster/main amd64 hyphy-mpi amd64 2.3.14+dfsg-1 [919 kB] Get:364 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get:365 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u3 [9183 kB] Get:366 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u3 [189 kB] Get:367 http://deb.debian.org/debian buster/main amd64 infernal amd64 1.1.2-2 [22.1 MB] Get:368 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:369 http://deb.debian.org/debian buster/main amd64 libarpack2 amd64 3.7.0-2 [102 kB] Get:370 http://deb.debian.org/debian buster/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [161 kB] Get:371 http://deb.debian.org/debian buster/main amd64 libarmadillo9 amd64 1:9.200.7+dfsg-1 [88.6 kB] Get:372 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get:373 http://deb.debian.org/debian buster/main amd64 libcaf-openmpi-3 amd64 2.4.0-2 [35.6 kB] Get:374 http://deb.debian.org/debian buster/main amd64 libcharls2 amd64 2.0.0+dfsg-1 [64.3 kB] Get:375 http://deb.debian.org/debian buster/main amd64 libcilkrts5 amd64 7.4.0-6 [42.2 kB] Get:376 http://deb.debian.org/debian buster/main amd64 libcoarrays-dev amd64 2.4.0-2 [29.1 kB] Get:377 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get:378 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:379 http://deb.debian.org/debian buster/main amd64 libcoarrays-openmpi-dev amd64 2.4.0-2 [35.2 kB] Get:380 http://deb.debian.org/debian buster/main amd64 libdap25 amd64 3.20.3-1 [557 kB] Get:381 http://deb.debian.org/debian buster/main amd64 libdapclient6v5 amd64 3.20.3-1 [202 kB] Get:382 http://deb.debian.org/debian buster/main amd64 libdapserver7v5 amd64 3.20.3-1 [131 kB] Get:383 http://deb.debian.org/debian buster/main amd64 libdata-dump-perl all 1.23-1 [29.5 kB] Get:384 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:385 http://deb.debian.org/debian buster/main amd64 libdigest-md5-file-perl all 0.08-1 [10.6 kB] Get:386 http://deb.debian.org/debian buster/main amd64 libpopt0 amd64 1.16-12 [49.4 kB] Get:387 http://deb.debian.org/debian buster/main amd64 libepsilon1 amd64 0.9.2+dfsg-4 [42.0 kB] Get:388 http://deb.debian.org/debian buster/main amd64 libfreexl1 amd64 1.0.5-3 [34.1 kB] Get:389 http://deb.debian.org/debian buster/main amd64 libfyba0 amd64 4.1.1-6 [114 kB] Get:390 http://deb.debian.org/debian buster/main amd64 libgeos-3.7.1 amd64 3.7.1-1 [735 kB] Get:391 http://deb.debian.org/debian buster/main amd64 libgeos-c1v5 amd64 3.7.1-1 [299 kB] Get:392 http://deb.debian.org/debian buster/main amd64 proj-data all 5.2.0-1 [6986 kB] Get:393 http://deb.debian.org/debian buster/main amd64 libproj13 amd64 5.2.0-1 [225 kB] Get:394 http://deb.debian.org/debian buster/main amd64 libgeotiff2 amd64 1.4.3-1 [72.0 kB] Get:395 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get:396 http://deb.debian.org/debian buster/main amd64 libhdf4-0-alt amd64 4.2.13-4 [277 kB] Get:397 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:398 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:399 http://deb.debian.org/debian buster/main amd64 libjson-c3 amd64 0.12.1+ds-2+deb10u1 [27.3 kB] Get:400 http://deb.debian.org/debian buster/main amd64 libminizip1 amd64 1.1-8+b1 [20.4 kB] Get:401 http://deb.debian.org/debian buster/main amd64 liburiparser1 amd64 0.9.1-1+deb10u1 [48.1 kB] Get:402 http://deb.debian.org/debian buster/main amd64 libkmlbase1 amd64 1.3.0-7 [48.9 kB] Get:403 http://deb.debian.org/debian buster/main amd64 libkmldom1 amd64 1.3.0-7 [172 kB] Get:404 http://deb.debian.org/debian buster/main amd64 libkmlengine1 amd64 1.3.0-7 [78.4 kB] Get:405 http://deb.debian.org/debian buster/main amd64 libkmlconvenience1 amd64 1.3.0-7 [50.1 kB] Get:406 http://deb.debian.org/debian buster/main amd64 libkmlregionator1 amd64 1.3.0-7 [25.1 kB] Get:407 http://deb.debian.org/debian buster/main amd64 libkmlxsd1 amd64 1.3.0-7 [34.6 kB] Get:408 http://deb.debian.org/debian buster/main amd64 libnetcdf13 amd64 1:4.6.2-1 [403 kB] Get:409 http://deb.debian.org/debian buster/main amd64 libodbc1 amd64 2.3.6-0.1 [223 kB] Get:410 http://deb.debian.org/debian buster/main amd64 libogdi3.2 amd64 3.2.1+ds-4 [241 kB] Get:411 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:412 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u5 [1160 kB] Get:413 http://deb.debian.org/debian buster/main amd64 libpoppler82 amd64 0.71.0-5 [1507 kB] Get:414 http://deb.debian.org/debian buster/main amd64 libqhull7 amd64 2015.2-4 [196 kB] Get:415 http://deb.debian.org/debian buster/main amd64 libspatialite7 amd64 4.3.0a-5+b2 [1256 kB] Get:416 http://deb.debian.org/debian buster/main amd64 libxerces-c3.2 amd64 3.2.2+debian-1+deb10u1 [886 kB] Get:417 http://deb.debian.org/debian buster/main amd64 odbcinst amd64 2.3.6-0.1 [48.4 kB] Get:418 http://deb.debian.org/debian buster/main amd64 odbcinst1debian2 amd64 2.3.6-0.1 [78.1 kB] Get:419 http://deb.debian.org/debian buster/main amd64 libgdal20 amd64 2.4.0+dfsg-1+b1 [6171 kB] Get:420 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:421 http://deb.debian.org/debian buster/main amd64 libhmsbeagle1v5 amd64 3.1.2+dfsg-6 [195 kB] Get:422 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get:423 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get:424 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get:425 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get:426 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get:427 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get:428 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get:429 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:430 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:431 http://deb.debian.org/debian buster/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:432 http://deb.debian.org/debian buster/main amd64 libjs-es5-shim all 4.5.12-1 [42.6 kB] Get:433 http://deb.debian.org/debian buster/main amd64 libjs-highlight.js all 9.12.0+dfsg1-4+deb10u1 [300 kB] Get:434 http://deb.debian.org/debian buster/main amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB] Get:435 http://deb.debian.org/debian buster/main amd64 libjs-sifter.js all 0.5.3+dfsg-1 [11.9 kB] Get:436 http://deb.debian.org/debian buster/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1 [3430 B] Get:437 http://deb.debian.org/debian buster/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1 [51.9 kB] Get:438 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:439 http://deb.debian.org/debian buster/main amd64 libjs-json all 0~20180723-2 [29.3 kB] Get:440 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:441 http://deb.debian.org/debian buster/main amd64 libjs-modernizr all 2.6.2+ds1-3 [46.7 kB] Get:442 http://deb.debian.org/debian buster/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:443 http://deb.debian.org/debian buster/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [32.0 kB] Get:444 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:445 http://deb.debian.org/debian buster/main amd64 libnamespace-autoclean-perl all 0.28-1 [14.7 kB] Get:446 http://deb.debian.org/debian buster/main amd64 libparams-validationcompiler-perl all 0.30-1 [31.6 kB] Get:447 http://deb.debian.org/debian buster/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:448 http://deb.debian.org/debian buster/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get:449 http://deb.debian.org/debian buster/main amd64 libspecio-perl all 0.43-1 [142 kB] Get:450 http://deb.debian.org/debian buster/main amd64 liblog-dispatch-perl all 2.68-1 [77.5 kB] Get:451 http://deb.debian.org/debian buster/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:452 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:453 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:454 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:455 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get:456 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get:457 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get:458 http://deb.debian.org/debian buster/main amd64 libreadonly-perl all 2.050-1 [22.7 kB] Get:459 http://deb.debian.org/debian buster/main amd64 libref-util-perl all 0.204-1 [17.1 kB] Get:460 http://deb.debian.org/debian buster/main amd64 libref-util-xs-perl amd64 0.117-1+b1 [14.0 kB] Get:461 http://deb.debian.org/debian buster/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:462 http://deb.debian.org/debian buster/main amd64 libruby2.5 amd64 2.5.5-3+deb10u4 [3442 kB] Get:463 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get:464 http://deb.debian.org/debian buster/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:465 http://deb.debian.org/debian buster/main amd64 libubsan0 amd64 7.4.0-6 [124 kB] Get:466 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:467 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:468 http://deb.debian.org/debian buster/main amd64 lynx amd64 2.8.9rel.1-3+deb10u1 [642 kB] Get:469 http://deb.debian.org/debian buster/main amd64 maq amd64 0.7.1-8 [313 kB] Get:470 http://deb.debian.org/debian buster/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get:471 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:472 http://deb.debian.org/debian buster/main amd64 ncoils amd64 2002-7 [21.9 kB] Get:473 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get:474 http://deb.debian.org/debian buster/main amd64 node-highlight.js all 9.12.0+dfsg1-4+deb10u1 [237 kB] Get:475 http://deb.debian.org/debian buster/main amd64 nodejs-doc all 10.24.0~dfsg-1~deb10u1 [974 kB] Get:476 http://deb.debian.org/debian buster/main amd64 pandoc-data all 2.2.1-3 [329 kB] Get:477 http://deb.debian.org/debian buster/main amd64 pandoc amd64 2.2.1-3+b2 [14.7 MB] Get:478 http://deb.debian.org/debian buster/main amd64 phyml amd64 3:3.3.20180621-2 [1653 kB] Get:479 http://deb.debian.org/debian buster/main amd64 prank amd64 0.0.170427+dfsg-2 [375 kB] Get:480 http://deb.debian.org/debian buster/main amd64 probalign amd64 1.4-8 [66.2 kB] Get:481 http://deb.debian.org/debian buster/main amd64 probcons amd64 1.12-12 [116 kB] Get:482 http://deb.debian.org/debian buster/main amd64 proda amd64 1.0-12 [63.7 kB] Get:483 http://deb.debian.org/debian buster/main amd64 proj-bin amd64 5.2.0-1 [105 kB] Get:484 http://deb.debian.org/debian buster/main amd64 psmisc amd64 23.2-1+deb10u1 [126 kB] Get:485 http://deb.debian.org/debian buster/main amd64 python3-soupsieve all 1.8+dfsg-1 [27.6 kB] Get:486 http://deb.debian.org/debian buster/main amd64 python3-bs4 all 4.7.1-1 [94.1 kB] Get:487 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:488 http://deb.debian.org/debian buster/main amd64 python3-gdal amd64 2.4.0+dfsg-1+b1 [601 kB] Get:489 http://deb.debian.org/debian buster/main amd64 python3-webencodings all 0.5.1-1 [10.9 kB] Get:490 http://deb.debian.org/debian buster/main amd64 python3-html5lib all 1.0.1-1 [89.5 kB] Get:491 http://deb.debian.org/debian buster/main amd64 python3-olefile all 0.46-1 [35.9 kB] Get:492 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:493 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:494 http://deb.debian.org/debian buster/main amd64 python3-sparqlwrapper all 1.8.2-0.1 [28.4 kB] Get:495 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get:496 http://deb.debian.org/debian buster/main amd64 r-base-dev all 3.5.2-1 [4480 B] Get:497 http://deb.debian.org/debian buster/main amd64 r-cran-abind all 1.4-5-1.2 [64.3 kB] Get:498 http://deb.debian.org/debian buster/main amd64 r-cran-backports amd64 1.1.3-1 [55.6 kB] Get:499 http://deb.debian.org/debian buster/main amd64 r-cran-base64enc amd64 0.1-3-2 [27.7 kB] Get:500 http://deb.debian.org/debian buster/main amd64 r-cran-bindr all 0.1.1-2 [18.1 kB] Get:501 http://deb.debian.org/debian buster/main amd64 r-cran-bindrcpp amd64 0.2.2-2 [71.4 kB] Get:502 http://deb.debian.org/debian buster/main amd64 r-cran-bit amd64 1.1-14-1+b1 [221 kB] Get:503 http://deb.debian.org/debian buster/main amd64 r-cran-bit64 amd64 0.9-7-3 [438 kB] Get:504 http://deb.debian.org/debian buster/main amd64 r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get:505 http://deb.debian.org/debian buster/main amd64 r-cran-blob all 1.1.1-2 [25.0 kB] Get:506 http://deb.debian.org/debian buster/main amd64 r-cran-data.table amd64 1.12.0+dfsg-1 [1359 kB] Get:507 http://deb.debian.org/debian buster/main amd64 r-cran-dbi all 1.0.0-2 [789 kB] Get:508 http://deb.debian.org/debian buster/main amd64 r-cran-rprojroot all 1.3-2-2 [96.9 kB] Get:509 http://deb.debian.org/debian buster/main amd64 r-cran-desc all 1.2.0-2 [290 kB] Get:510 http://deb.debian.org/debian buster/main amd64 r-cran-hms all 0.4.2-2 [59.1 kB] Get:511 http://deb.debian.org/debian buster/main amd64 r-cran-praise all 1.0.0-3 [19.7 kB] Get:512 http://deb.debian.org/debian buster/main amd64 r-cran-testthat amd64 2.0.1-1 [954 kB] Get:513 http://deb.debian.org/debian buster/main amd64 r-cran-dbitest all 1.5-2-2 [432 kB] Get:514 http://deb.debian.org/debian buster/main amd64 r-cran-dichromat all 1:2.0-0-2 [148 kB] Get:515 http://deb.debian.org/debian buster/main amd64 r-cran-iterators all 1.0.10-1 [330 kB] Get:516 http://deb.debian.org/debian buster/main amd64 r-cran-foreach all 1.4.4-2 [401 kB] Get:517 http://deb.debian.org/debian buster/main amd64 r-cran-multicore amd64 0.2-1+b2 [22.5 kB] Get:518 http://deb.debian.org/debian buster/main amd64 r-cran-domc all 1.3.5-2 [163 kB] Get:519 http://deb.debian.org/debian buster/main amd64 r-cran-purrr amd64 0.3.0-1 [384 kB] Get:520 http://deb.debian.org/debian buster/main amd64 r-cran-tidyselect amd64 0.2.5-1 [117 kB] Get:521 http://deb.debian.org/debian buster/main amd64 r-cran-dplyr amd64 0.7.8-1 [1693 kB] Get:522 http://deb.debian.org/debian buster/main amd64 r-cran-evaluate all 0.13-1 [78.5 kB] Get:523 http://deb.debian.org/debian buster/main amd64 r-cran-filehash amd64 2.4-1-3 [305 kB] Get:524 http://deb.debian.org/debian buster/main amd64 r-cran-hexbin amd64 1.27.2-2+b1 [826 kB] Get:525 http://deb.debian.org/debian buster/main amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB] Get:526 http://deb.debian.org/debian buster/main amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB] Get:527 http://deb.debian.org/debian buster/main amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get:528 http://deb.debian.org/debian buster/main amd64 r-cran-yaml amd64 2.2.0-1 [101 kB] Get:529 http://deb.debian.org/debian buster/main amd64 r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB] Get:530 http://deb.debian.org/debian buster/main amd64 r-cran-later amd64 0.7.5+dfsg-2 [71.1 kB] Get:531 http://deb.debian.org/debian buster/main amd64 r-cran-promises amd64 1.0.1-2 [161 kB] Get:532 http://deb.debian.org/debian buster/main amd64 r-cran-httpuv amd64 1.4.5.1+dfsg-1 [292 kB] Get:533 http://deb.debian.org/debian buster/main amd64 r-cran-mime amd64 0.6-1 [35.1 kB] Get:534 http://deb.debian.org/debian buster/main amd64 r-cran-markdown amd64 0.9+dfsg-1 [126 kB] Get:535 http://deb.debian.org/debian buster/main amd64 r-cran-xfun all 0.4-1 [145 kB] Get:536 http://deb.debian.org/debian buster/main amd64 r-cran-knitr all 1.21+dfsg-2 [855 kB] Get:537 http://deb.debian.org/debian buster/main amd64 r-cran-lubridate amd64 1.7.4-2 [1028 kB] Get:538 http://deb.debian.org/debian buster/main amd64 r-cran-maps amd64 3.3.0-2 [2243 kB] Get:539 http://deb.debian.org/debian buster/main amd64 r-cran-mapproj amd64 1.2.6-2 [53.7 kB] Get:540 http://deb.debian.org/debian buster/main amd64 r-cran-memoise all 1.1.0-2 [38.6 kB] Get:541 http://deb.debian.org/debian buster/main amd64 r-cran-mockery all 0.4.1.1+dfsg-1 [39.1 kB] Get:542 http://deb.debian.org/debian buster/main amd64 r-cran-mockr all 0.1-2 [23.7 kB] Get:543 http://deb.debian.org/debian buster/main amd64 r-cran-png amd64 0.1-7-3 [40.4 kB] Get:544 http://deb.debian.org/debian buster/main amd64 r-cran-tinytex all 0.10-1 [89.6 kB] Get:545 http://deb.debian.org/debian buster/main amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get:546 http://deb.debian.org/debian buster/main amd64 r-cran-sourcetools amd64 0.1.7-2 [45.2 kB] Get:547 http://deb.debian.org/debian buster/main amd64 r-cran-shiny all 1.2.0+dfsg-1 [3013 kB] Get:548 http://deb.debian.org/debian buster/main amd64 r-cran-rmarkdown all 1.11+dfsg-1 [2271 kB] Get:549 http://deb.debian.org/debian buster/main amd64 r-cran-rsqlite amd64 2.1.1-2+b1 [858 kB] Get:550 http://deb.debian.org/debian buster/main amd64 r-cran-runit all 0.4.32-2 [293 kB] Get:551 http://deb.debian.org/debian buster/main amd64 r-cran-sp amd64 1:1.3-1-1 [1822 kB] Get:552 http://deb.debian.org/debian buster/main amd64 r-cran-testit all 0.9-1 [32.2 kB] Get:553 http://deb.debian.org/debian buster/main amd64 r-cran-tikzdevice amd64 0.12-1 [1074 kB] Get:554 http://deb.debian.org/debian buster/main amd64 r-cran-xml2 amd64 1.2.0-3 [338 kB] Get:555 http://deb.debian.org/debian buster/main amd64 r-recommended all 3.5.2-1 [2772 B] Get:556 http://deb.debian.org/debian buster/main amd64 rename all 1.10-1 [17.2 kB] Get:557 http://deb.debian.org/debian buster/main amd64 roary all 3.12.0+dfsg-2 [176 kB] Get:558 http://deb.debian.org/debian buster/main amd64 ruby2.5 amd64 2.5.5-3+deb10u4 [400 kB] Get:559 http://deb.debian.org/debian buster/main amd64 ruby amd64 1:2.5.1 [11.3 kB] Get:560 http://deb.debian.org/debian buster/main amd64 samtools amd64 1.9-4 [443 kB] Get:561 http://deb.debian.org/debian buster/main amd64 t-coffee amd64 12.00.7fb08c2-4 [1520 kB] Get:562 http://deb.debian.org/debian buster/main amd64 tigr-glimmer amd64 3.02b-2 [282 kB] Get:563 http://deb.debian.org/debian buster/main amd64 tm-align amd64 20170708+dfsg-2 [871 kB] Get:564 http://deb.debian.org/debian buster/main amd64 x11-xserver-utils amd64 7.7+8 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 502 MB in 9s (53.5 MB/s) (Reading database ... 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Setting up libc6:amd64 (2.28-10+deb10u1) ... Installing new version of config file /etc/ld.so.conf.d/x86_64-linux-gnu.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43323 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc-bin (2.28-10+deb10u1) ... Updating /etc/nsswitch.conf to current default. Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43323 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.3.0-6_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-6) ... Setting up gcc-8-base:amd64 (8.3.0-6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43340 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3_amd64.deb ... Unpacking coreutils (8.30-3) over (8.26-3) ... Setting up coreutils (8.30-3) ... Selecting previously unselected package libzstd1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43340 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3+deb10u2_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43346 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43352 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) over (0.16-1+deb9u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43375 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.15-2+deb10u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.15-2+deb10u1) over (0.23.3-2) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43375 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u8_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u8) over (3.5.8-5+deb9u5) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u8) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43376 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-4_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.3-4) ... Setting up libseccomp2:amd64 (2.3.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43382 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.35-1_amd64.deb ... Unpacking libgpg-error0:amd64 (1.35-1) over (1.26-2) ... Setting up libgpg-error0:amd64 (1.35-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43363 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1+deb10u2_amd64.deb ... Unpacking gpgv (2.2.12-1+deb10u2) over (2.1.18-8~deb9u4) ... Setting up gpgv (2.2.12-1+deb10u2) ... Selecting previously unselected package libdrm-common. (Reading database ... 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Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) over (0.8.3-1) ... Preparing to unpack .../4-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) over (3.1-20160903-3) ... Selecting previously unselected package libllvm7:amd64. Preparing to unpack .../5-libllvm7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Preparing to unpack .../6-sysstat_12.0.3-2_amd64.deb ... Unpacking sysstat (12.0.3-2) over (11.4.3-2) ... Preparing to unpack .../7-libgl1-mesa-dri_18.3.6-2+deb10u1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) over (13.0.6-1+b2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43434 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.19.8_amd64.deb ... Unpacking dpkg (1.19.8) over (1.18.25) ... Setting up dpkg (1.19.8) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43422 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.33.1-0.1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libsmartcols1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43422 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.33.1-0.1_amd64.deb ... Unpacking libfdisk1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libfdisk1:amd64 (2.33.1-0.1) ... Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43422 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43431 files and directories currently installed.) Preparing to unpack .../libmount1_2.33.1-0.1_amd64.deb ... Unpacking libmount1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libmount1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43431 files and directories currently installed.) Preparing to unpack .../mount_2.33.1-0.1_amd64.deb ... Unpacking mount (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Preparing to unpack .../util-linux_2.33.1-0.1_amd64.deb ... Unpacking util-linux (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Replacing files in old package login (1:4.4-4.1) ... Selecting previously unselected package fdisk. Preparing to unpack .../fdisk_2.33.1-0.1_amd64.deb ... Unpacking fdisk (2.33.1-0.1) ... Setting up fdisk (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43448 files and directories currently installed.) Preparing to unpack .../login_1%3a4.5-1.1_amd64.deb ... Unpacking login (1:4.5-1.1) over (1:4.4-4.1) ... Setting up login (1:4.5-1.1) ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43436 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43438 files and directories currently installed.) Preparing to unpack .../00-perl-doc_5.28.1-6+deb10u1_all.deb ... Leaving 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.28.1-6+deb10u1) over (5.24.1-3+deb9u7) ... Preparing to unpack .../01-libclass-xsaccessor-perl_1.19-3+b2_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b2) over (1.19-2+b7) ... Preparing to unpack .../02-libscalar-list-utils-perl_1%3a1.50-1+b1_amd64.deb ... Unpacking libscalar-list-utils-perl (1:1.50-1+b1) over (1:1.47-1) ... Preparing to unpack .../03-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) over (0.416-1+b1) ... Preparing to unpack .../04-libdbi-perl_1.642-1+deb10u2_amd64.deb ... Unpacking libdbi-perl:amd64 (1.642-1+deb10u2) over (1.636-1+b1) ... Preparing to unpack .../05-libfcgi-perl_0.78-2+b3_amd64.deb ... Unpacking libfcgi-perl (0.78-2+b3) over (0.78-2) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../06-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../07-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... 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Setting up util-linux (2.33.1-0.1) ... update-alternatives: warning: alternative /usr/bin/pg (part of link group pager) doesn't exist; removing from list of alternatives Setting up libodbc1:amd64 (2.3.6-0.1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-1) ... Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Setting up libmpx2:amd64 (8.3.0-6) ... Setting up libubsan1:amd64 (8.3.0-6) ... Setting up libgif7:amd64 (5.1.4-3) ... Setting up liburiparser1:amd64 (0.9.1-1+deb10u1) ... Setting up libisl19:amd64 (0.20-2) ... Setting up libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up mount (2.33.1-0.1) ... Setting up libfreexl1:amd64 (1.0.5-3) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up exim4-config (4.92-8+deb10u6) ... Installing new version of config file /etc/exim4/conf.d/acl/30_exim4-config_check_rcpt ... Installing new version of config file /etc/exim4/conf.d/acl/40_exim4-config_check_data ... Installing new version of config file /etc/exim4/conf.d/main/01_exim4-config_listmacrosdefs ... Installing new version of config file /etc/exim4/conf.d/main/02_exim4-config_options ... Installing new version of config file /etc/exim4/conf.d/router/200_exim4-config_primary ... Installing new version of config file /etc/exim4/conf.d/transport/30_exim4-config_remote_smtp ... Installing new version of config file /etc/exim4/conf.d/transport/30_exim4-config_remote_smtp_smarthost ... Installing new version of config file /etc/exim4/exim4.conf.template ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libcilkrts5:amd64 (7.4.0-6) ... Setting up libfyba0:amd64 (4.1.1-6) ... Setting up libubsan0:amd64 (7.4.0-6) ... Setting up procps (2:3.3.15-2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up libkmlbase1:amd64 (1.3.0-7) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up gpgconf (2.2.12-1+deb10u2) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up hmmer (3.2.1+dfsg-1) ... Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up pandoc-data (2.2.1-3) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libbinutils:amd64 (2.31.1-16) ... Setting up cpp-8 (8.3.0-6) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up tigr-glimmer (3.02b-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up sysstat (12.0.3-2) ... Installing new version of config file /etc/init.d/sysstat ... Installing new version of config file /etc/sysstat/sysstat ... Installing new version of config file /etc/sysstat/sysstat.ioconf ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up libcc1-0:amd64 (8.3.0-6) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gpg (2.2.12-1+deb10u2) ... Setting up guile-2.2-libs:amd64 (2.2.4+1-2+deb10u1) ... Setting up liblsan0:amd64 (8.3.0-6) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libitm1:amd64 (8.3.0-6) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up prank (0.0.170427+dfsg-2) ... Setting up libkmlxsd1:amd64 (1.3.0-7) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libpopt0:amd64 (1.16-12) ... Setting up maq (0.7.1-8) ... Setting up gnupg-utils (2.2.12-1+deb10u2) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libaprutil1:amd64 (1.6.1-4) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up libkmldom1:amd64 (1.3.0-7) ... Setting up libwayland-client0:amd64 (1.16.0-1) ... Setting up libspatialite7:amd64 (4.3.0a-5+b2) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up libogdi3.2 (3.2.1+ds-4) ... Setting up exim4-base (4.92-8+deb10u6) ... Installing new version of config file /etc/cron.daily/exim4-base ... Installing new version of config file /etc/init.d/exim4 ... Setting up gpg-agent (2.2.12-1+deb10u2) ... Setting up libkmlengine1:amd64 (1.3.0-7) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libkmlconvenience1:amd64 (1.3.0-7) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up guile-2.0-libs:amd64 (2.0.13+1-5.1) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up gpgsm (2.2.12-1+deb10u2) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Setting up libtbb2:amd64 (2018~U6-4) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libdap25:amd64 (3.20.3-1) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u5) ... Setting up binutils (2.31.1-16) ... Setting up clustalo (1.2.4-2) ... Setting up libaprutil1-ldap:amd64 (1.6.1-4) ... Setting up tm-align (20170708+dfsg-2) ... Setting up libepsilon1:amd64 (0.9.2+dfsg-4) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-4) ... Setting up libdapserver7v5:amd64 (3.20.3-1) ... Setting up python2 (2.7.16-1) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up dirmngr (2.2.12-1+deb10u2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libgeotiff2:amd64 (1.4.3-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.9.0-2+deb10u2) ... Setting up pandoc (2.2.1-3+b2) ... Setting up libkmlregionator1:amd64 (1.3.0-7) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up gnupg-agent (2.2.12-1+deb10u2) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up gpg-wks-server (2.2.12-1+deb10u2) ... Setting up libcups2:amd64 (2.2.10-6+deb10u6) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up cpp (4:8.3.0-1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up lynx (2.8.9rel.1-3+deb10u1) ... Setting up python (2.7.16-1) ... Setting up libicu-dev:amd64 (63.1-6+deb10u3) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libgnutls-dane0:amd64 (3.6.7-4+deb10u8) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up gcc-8 (8.3.0-6) ... Setting up gpg-wks-client (2.2.12-1+deb10u2) ... Setting up bowtie (1.2.2+dfsg-4) ... Setting up libgbm1:amd64 (18.3.6-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libruby2.5:amd64 (2.5.5-3+deb10u4) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing obsolete conffile /etc/drirc ... Setting up libarpack2:amd64 (3.7.0-2) ... Setting up libpq5:amd64 (11.16-0+deb10u1) ... Setting up libgsasl7 (1.8.0-8+deb10u1) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up libnetcdf13:amd64 (1:4.6.2-1) ... Setting up python3 (3.7.3-1) ... Setting up libreadline-dev:amd64 (7.0-5) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up x11-xserver-utils (7.7+8) ... Setting up nodejs (10.24.0~dfsg-1~deb10u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up python3-webencodings (0.5.1-1) ... Setting up python3-psutil (5.5.1-1) ... Setting up gcc (4:8.3.0-1) ... Setting up libcupsimage2:amd64 (2.2.10-6+deb10u6) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-isodate (0.6.0-1) ... Setting up python3-pil:amd64 (5.4.1-2+deb10u3) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up perl (5.28.1-6+deb10u1) ... Removing obsolete conffile /etc/perl/sitecustomize.pl ... Setting up libpackage-stash-xs-perl (0.29-1) ... Setting up libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libcaf-openmpi-3:amd64 (2.4.0-2) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up libdata-dump-perl (1.23-1) ... Setting up python3-certifi (2018.8.24-1) ... Setting up libref-util-perl (0.204-1) ... Setting up libperlio-utf8-strict-perl (0.007-2+b1) ... Setting up r-base-core (3.5.2-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Installing new version of config file /etc/R/Rprofile.site ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4) ... Setting up r-cran-multicore (0.2-1+b2) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up r-cran-gtable (0.2.0-3) ... Setting up libvariable-magic-perl (0.62-1+b1) ... Setting up python3-idna (2.6-1) ... Setting up r-cran-labeling (0.3-3) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libace-perl (1.92-8+b1) ... Setting up r-cran-sourcetools (0.1.7-2) ... Setting up python3-typing-extensions (3.7.2-1) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up python3-html5lib (1.0.1-1) ... Setting up r-cran-nlme (3.1.137-1+b3) ... Setting up libparams-util-perl (1.07-3+b4) ... Setting up autoconf (2.69-11) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up r-cran-hexbin (1.27.2-2+b1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python3-ruamel.yaml (0.15.34-1+b1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libtype-tiny-xs-perl (0.014-1+b1) ... Setting up g++-8 (8.3.0-6) ... Setting up r-cran-viridislite (0.3.0-3) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u4) ... Setting up python3-rdflib (4.2.2-2) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up r-cran-cluster (2.0.7-1-1+b3) ... Setting up libncurses5-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdapclient6v5:amd64 (3.20.3-1) ... Setting up libegl1:amd64 (1.1.0-1) ... Setting up gnupg (2.2.12-1+deb10u2) ... Setting up libfcgi-perl (0.78-2+b3) ... Setting up r-cran-nnet (7.3-12-2+b2) ... Setting up python3-dateutil (2.7.3-3) ... Setting up emboss-lib (6.6.0+dfsg-7+b1) ... Setting up libclass-load-xs-perl (0.10-1+b3) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b2) ... Setting up r-cran-lazyeval (0.2.1-3) ... Setting up python3-shellescape (3.4.1-3) ... Setting up libarmadillo9 (1:9.200.7+dfsg-1) ... Setting up r-cran-r6 (2.4.0-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up libparams-validate-perl (1.29-1+b1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-mistune (0.8.4-1) ... Setting up libalgorithm-diff-xs-perl (0.04-5+b1) ... Setting up r-cran-magrittr (1.5-5) ... Setting up python3-soupsieve (1.8+dfsg-1) ... Setting up r-cran-testit (0.9-1) ... Setting up exim4-daemon-light (4.92-8+deb10u6) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libdbi-perl:amd64 (1.642-1+deb10u2) ... Setting up openmpi-bin (3.1.3-11) ... Installing new version of config file /etc/openmpi/openmpi-mca-params.conf ... update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20180621-2) ... Setting up libmailutils5:amd64 (1:3.5-4) ... Setting up r-cran-littler (0.3.6-1) ... Setting up libnet-ssleay-perl (1.85-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.7.3-1) ... Setting up libbio-perl-run-perl (1.7.2-4) ... Setting up libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up r-cran-filehash (2.4-1-3) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up python3-lockfile (1:0.12.2-2) ... Setting up r-cran-codetools (0.2-16-1) ... Setting up node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up r-cran-bindr (0.1.1-2) ... Setting up r-cran-boot (1.3-20-2) ... Setting up libparams-validationcompiler-perl (0.30-1) ... Setting up r-cran-maps (3.3.0-2) ... Setting up python3-rdflib-jsonld (0.4.0-4) ... Setting up mailutils (1:3.5-4) ... Setting up r-cran-rlang (0.3.1-2) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b7) ... Setting up r-cran-assertthat (0.2.0-2) ... Setting up libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Setting up emboss (6.6.0+dfsg-7+b1) ... Setting up python3-sparqlwrapper (1.8.2-0.1) ... Setting up libgs9:amd64 (9.27~dfsg-2+deb10u5) ... Setting up r-cran-bindrcpp (0.2.2-2) ... Setting up libwww-perl (6.36-2) ... Setting up libconvert-binary-c-perl (0.78-1+b4) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up ruby2.5 (2.5.5-3+deb10u4) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libref-util-xs-perl (0.117-1+b1) ... Setting up perl-tk (1:804.033-2+b3) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up r-cran-xfun (0.4-1) ... Setting up libfile-fcntllock-perl (0.22-3+b5) ... Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-backports (1.1.3-1) ... Setting up libclone-perl (0.41-1+b1) ... Setting up python3-typed-ast (1.3.1-1) ... Setting up libsub-identify-perl (0.14-1+b1) ... Setting up r-cran-mime (0.6-1) ... Setting up r-cran-praise (1.0.0-3) ... Setting up libmoose-perl (2.2011-1+b1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up r-cran-base64enc (0.1-3-2) ... Setting up libscalar-list-utils-perl (1:1.50-1+b1) ... Setting up r-cran-iterators (1.0.10-1) ... Setting up r-cran-spatial (7.3-11-2+b2) ... Setting up python3-mypy-extensions (0.4.1-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up r-cran-abind (1.4-5-1.2) ... Setting up python3-olefile (0.46-1) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-yaml (2.2.0-1) ... Setting up libipc-sharelite-perl (0.17-4+b3) ... Setting up r-cran-xml2 (1.2.0-3) ... Setting up r-cran-evaluate (0.13-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up r-cran-dbi (1.0.0-2) ... Setting up r-cran-highr (0.7+dfsg-1) ... Setting up r-cran-foreach (1.4.4-2) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up r-cran-prettyunits (1.0.2-3) ... Setting up r-cran-fansi (0.4.0-1) ... Setting up hyphy-mpi (2.3.14+dfsg-1) ... Setting up r-cran-mass (7.3-51.1-1) ... Setting up libpoppler82:amd64 (0.71.0-5) ... Setting up perl-doc (5.28.1-6+deb10u1) ... Setting up libnet-dbus-perl (1.1.0-5+b1) ... Setting up r-cran-mockr (0.1-2) ... Setting up libbsd-resource-perl (1.2911-1+b3) ... Setting up python3-yaml (3.13-2) ... Setting up libpadwalker-perl (2.3-1+b1) ... Setting up rename (1.10-1) ... Setting up libdbd-pg-perl (3.7.4-3) ... Setting up libtext-csv-xs-perl (1.38-1) ... Setting up ghostscript (9.27~dfsg-2+deb10u5) ... Setting up r-cran-data.table (1.12.0+dfsg-1) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-foreign (0.8.71-1) ... Setting up apache2-bin (2.4.38-3+deb10u8) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up r-cran-bit (1.1-14-1+b1) ... Setting up python3-networkx (2.2-1) ... Setting up r-cran-xtable (1:1.8-3-1) ... Setting up libclass-c3-xs-perl (0.14-1+b3) ... Setting up r-cran-cli (1.0.1-1) ... Setting up gfortran (4:8.3.0-1) ... Setting up libdevel-caller-perl (2.06-2+b1) ... Setting up r-cran-rprojroot (1.3-2-2) ... Setting up r-cran-bit64 (0.9-7-3) ... Setting up python3-bs4 (4.7.1-1) ... Setting up r-cran-dichromat (1:2.0-0-2) ... Setting up python3-prov (1.5.2-1) ... Setting up samtools (1.9-4) ... Setting up libbit-vector-perl (7.4-1+b5) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up r-cran-png (0.1-7-3) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libgd-perl (2.71-2) ... Setting up libreadonly-perl (2.050-1) ... Setting up r-cran-pkgconfig (2.0.2-1) ... Setting up r-cran-testthat (2.0.1-1) ... Setting up libspecio-perl (0.43-1) ... Setting up libdigest-md5-file-perl (0.08-1) ... Setting up libunicode-map-perl (0.112-12+b1) ... Setting up r-cran-mapproj (1.2.6-2) ... Setting up libdevel-lexalias-perl (0.05-2+b1) ... Setting up ruby (1:2.5.1) ... Setting up exim4 (4.92-8+deb10u6) ... Setting up r-cran-sp (1:1.3-1-1) ... Setting up r-cran-utf8 (1.1.4-1+b1) ... Setting up r-cran-colorspace (1.4-0+dfsg-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up r-cran-mockery (0.4.1.1+dfsg-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up r-cran-stringi (1.2.4-2) ... Setting up r-cran-markdown (0.9+dfsg-1) ... Setting up libapache2-mod-perl2 (2.0.10-3) ... Setting up r-cran-plyr (1.8.4-2) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-cran-runit (0.4.32-2) ... Setting up python3-requests (2.21.0-1) ... Setting up r-cran-hms (0.4.2-2) ... Setting up r-cran-memoise (1.1.0-2) ... Setting up libdbd-mysql-perl:amd64 (4.050-2) ... Setting up python3-mypy (0.670-2) ... Setting up r-cran-purrr (0.3.0-1) ... Setting up r-cran-later (0.7.5+dfsg-2) ... Setting up r-cran-blob (1.1.1-2) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up libxml-libxslt-perl (1.96-1+b1) ... Setting up r-cran-htmltools (0.3.6-2) ... Setting up r-cran-tinytex (0.10-1) ... Setting up r-cran-kernsmooth (2.23-15-3+b4) ... Setting up r-cran-mgcv (1.8-27-1) ... Setting up bioperl-run (1.7.2-4) ... Setting up libgl1-mesa-glx:amd64 (18.3.6-2+deb10u1) ... Setting up g++ (4:8.3.0-1) ... Setting up r-cran-domc (1.3.5-2) ... Setting up r-cran-tikzdevice (0.12-1) ... Setting up x11-utils (7.7+4) ... Installing new version of config file /etc/X11/app-defaults/Editres ... Setting up build-essential (12.6) ... Setting up libdbd-sqlite3-perl:amd64 (1.62-3) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up python3-cachecontrol (0.11.7-1) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libnamespace-autoclean-perl (0.28-1) ... Setting up r-cran-rsqlite (2.1.1-2+b1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up r-cran-pillar (1.3.1-1) ... Setting up libxml-parser-perl (2.44-4) ... Setting up r-base-dev (3.5.2-1) ... Setting up python3-scipy (1.1.0-7) ... Setting up r-cran-stringr (1.4.0-1) ... Setting up r-cran-class (7.3-15-1) ... Setting up libdate-calc-xs-perl (6.4-1+b4) ... Setting up libcoarrays-dev:amd64 (2.4.0-2) ... Setting up r-cran-desc (1.2.0-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up python3-schema-salad (3.0.20181206233650-2) ... Setting up r-cran-tibble (2.0.1-1) ... Setting up r-cran-survival (2.43-3-1) ... Setting up cwltool (1.0.20181217162649+dfsg-10) ... Setting up libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Setting up r-cran-htmlwidgets (1.3+dfsg-1) ... Setting up r-cran-tidyselect (0.2.5-1) ... Setting up beignet-opencl-icd:amd64 (1.3.2-6+b10) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-cran-promises (1.0.1-2) ... Setting up r-cran-dbitest (1.5-2-2) ... Setting up r-cran-knitr (1.21+dfsg-2) ... Setting up liblog-dispatch-perl (2.68-1) ... Setting up r-cran-dplyr (0.7.8-1) ... Setting up r-cran-lubridate (1.7.4-2) ... Setting up r-cran-ggplot2 (3.1.0-1) ... Setting up r-cran-httpuv (1.4.5.1+dfsg-1) ... Setting up libhmsbeagle1v5 (3.1.2+dfsg-6) ... Setting up r-cran-rpart (4.1-13-1+b1) ... Setting up r-cran-shiny (1.2.0+dfsg-1) ... Setting up r-cran-rmarkdown (1.11+dfsg-1) ... Setting up roary (3.12.0+dfsg-2) ... Setting up r-recommended (3.5.2-1) ... Setting up odbcinst (2.3.6-0.1) ... Setting up odbcinst1debian2:amd64 (2.3.6-0.1) ... Setting up libgdal20 (2.4.0+dfsg-1+b1) ... Setting up python3-gdal (2.4.0+dfsg-1+b1) ... Processing triggers for fontconfig (2.13.1-2) ... Processing triggers for mime-support (3.62) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for shared-mime-info (1.10-1) ... Processing triggers for menu (2.1.47+b1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 4m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-yf', 'dist-upgrade'] 4m48.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m49.7s DUMP: f6fc0f2636004ef589309651dfd778f4 - 4m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'show', '--no-all-versions', 'roary'] 4m50.0s DUMP: Package: roary Version: 3.12.0+dfsg-2 Installed-Size: 659 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, bioperl, libarray-utils-perl, libdigest-md5-file-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree Description-en: high speed stand alone pan genome pipeline Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes. Description-md5: 6d457fd706202fc2ef292eacf7b46029 Homepage: http://sanger-pathogens.github.io/Roary/ Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing, use::comparing Section: science Priority: optional Filename: pool/main/r/roary/roary_3.12.0+dfsg-2_all.deb Size: 175808 MD5sum: 3bae32a1e6cd3c3b9e0afbbaebdcd928 SHA256: 0a1009cd6258701da1316076dff44da1fb5bcc98986234beaf80796b33413620 4m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'show', '--no-all-versions', 'roary'] 4m50.0s INFO: apt-cache knows about the following packages: roary 4m50.0s INFO: Running scripts pre_install 4m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_database-server'] 4m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_database-server'] 4m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_exceptions'] 4m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_exceptions'] 4m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_extras'] 4m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_extras'] 4m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture'] 4m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture'] 4m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy'] 4m50.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 4m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy'] 4m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy', 'roary'] 4m50.2s DUMP: roary: Installed: 3.12.0+dfsg-2 Candidate: 3.12.0+dfsg-2 Version table: *** 3.12.0+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 4m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy', 'roary'] 4m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'install', 'roary'] 4m50.5s DUMP: Reading package lists... Building dependency tree... Reading state information... roary is already the newest version (3.12.0+dfsg-2). The following packages were automatically installed and are no longer required: cdbs exim4 gnupg-agent guile-2.0-libs libann0 libblas-common libgdbm3 libgl1-mesa-glx libhmsbeagle1v5 libhpdf-2.2.1 libhts1 libicu57 libncurses5 libopenmpi2 libparams-validate-perl libperl5.24 libprocps6 libruby2.3 libssl1.0.2 libtinfo-dev libtxc-dxtn-s2tc libunistring0 rename ruby2.3 sgml-base tcpd xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'install', 'roary'] 4m50.5s INFO: Running scripts post_install 4m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_install_exceptions'] 4m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_install_exceptions'] 4m50.6s INFO: Running scripts post_distupgrade 4m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_exceptions'] 4m50.8s DUMP: Normalized /etc/ca-certificates.conf removed empty directory '/etc/dbus-1/system.d' Running pam-auth-update... 4m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_exceptions'] 4m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m50.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_zz_backports'] 4m50.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_distupgrade_zz_backports'] 4m50.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 4m53.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 4m53.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 4m55.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 4m55.7s INFO: Running scripts pre_install 4m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_database-server'] 4m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_database-server'] 4m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_exceptions'] 4m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_exceptions'] 4m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_extras'] 4m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_extras'] 4m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture'] 4m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture'] 4m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy'] 4m55.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 4m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy'] 4m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy', 'roary'] 4m55.8s DUMP: roary: Installed: 3.12.0+dfsg-2 Candidate: 3.12.0+dfsg-2 Version table: *** 3.12.0+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 4m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-cache', 'policy', 'roary'] 4m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'install', 'roary=3.12.0+dfsg-2'] 4m56.3s DUMP: Reading package lists... Building dependency tree... Reading state information... roary is already the newest version (3.12.0+dfsg-2). The following packages were automatically installed and are no longer required: cdbs exim4 gnupg-agent guile-2.0-libs libann0 libblas-common libgdbm3 libgl1-mesa-glx libhmsbeagle1v5 libhpdf-2.2.1 libhts1 libicu57 libncurses5 libopenmpi2 libparams-validate-perl libperl5.24 libprocps6 libruby2.3 libssl1.0.2 libtinfo-dev libtxc-dxtn-s2tc libunistring0 rename ruby2.3 sgml-base tcpd xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', '-y', 'install', 'roary=3.12.0+dfsg-2'] 4m56.3s INFO: Running scripts post_install 4m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_install_exceptions'] 4m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_install_exceptions'] 4m56.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 4m59.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 5m3.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz_cil040', '-ac', '--ignore-obsolete'] 5m34.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz_cil040', '-ac', '--ignore-obsolete'] 5m34.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 5m34.9s DUMP: 0.15.6 5m34.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 5m34.9s INFO: Running adequate version 0.15.6 now. 5m34.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'roary'] 5m35.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'roary'] 5m35.2s INFO: Running scripts pre_remove 5m35.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 5m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 5m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 5m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 5m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 6m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 6m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 6m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 6m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 6m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 6m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_exceptions'] 6m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/pre_remove_exceptions'] 6m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 6m6.7s DUMP: install ok installed adduser adduser 3.118 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-1 install ok installed apache2-bin apache2-bin 2.4.38-3+deb10u8 install ok installed apt apt 1.8.2.3 install ok installed autoconf autoconf 2.69-11 install ok installed automake automake 1:1.16.1-4 install ok installed autotools-dev autotools-dev 20180224.1 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bedtools bedtools 2.27.1+dfsg-4 install ok installed beignet-opencl-icd:amd64 beignet-opencl-icd 1.3.2-6+b10 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed bioperl bioperl 1.7.2-3 install ok installed bioperl-run bioperl-run 1.7.2-4 install ok installed blast2 blast2 1:2.8.1-1+deb10u1 install ok installed blends-common blends-common 0.7.2 install ok installed bowtie bowtie 1.2.2+dfsg-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed build-essential build-essential 12.6 install ok installed bwa bwa 0.7.17-3 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed bzip2-doc bzip2-doc 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed cd-hit cd-hit 4.6.8-2 install ok installed cdbs cdbs 0.4.159 install ok installed clustalo clustalo 1.2.4-2 install ok installed clustalw clustalw 2.1+lgpl-6 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-6 cpp-6 6.3.0-18+deb9u1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed cron cron 3.0pl1-134+deb10u1 install ok installed cwltool cwltool 1.0.20181217162649+dfsg-10 install ok installed dash dash 0.5.10.2-5 install ok installed dbus dbus 1.12.20-0+deb10u1 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed dialign dialign 2.2.1-10 install ok installed dialign-tx dialign-tx 1.0.2-12 install ok installed dialign-tx-data dialign-tx-data 1.0.2-12 install ok installed diffutils diffutils 1:3.7-3 install ok installed dirmngr dirmngr 2.2.12-1+deb10u2 install ok installed dpkg dpkg 1.19.8 install ok installed dpkg-dev dpkg-dev 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed emboss emboss 6.6.0+dfsg-7+b1 install ok installed emboss-data emboss-data 6.6.0+dfsg-7 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-7+b1 install ok installed exim4 exim4 4.92-8+deb10u6 install ok installed exim4-base exim4-base 4.92-8+deb10u6 install ok installed exim4-config exim4-config 4.92-8+deb10u6 install ok installed exim4-daemon-light exim4-daemon-light 4.92-8+deb10u6 install ok installed exonerate exonerate 2.4.0-4 install ok installed fakeroot fakeroot 1.23-1 install ok installed fasttree fasttree 2.1.10-2 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed fonts-lato fonts-lato 2.0-2 install ok installed fonts-liberation fonts-liberation 1:1.07.4-9 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed fonts-noto-mono fonts-noto-mono 20181227-1 install ok installed fsa fsa 1.15.9+dfsg-4 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-6 g++-6 6.3.0-18+deb9u1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gawk gawk 1:4.2.1+dfsg-1 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-6 gcc-6 6.3.0-18+deb9u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-7-base:amd64 gcc-7-base 7.4.0-6 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gdal-data gdal-data 2.4.0+dfsg-1 install ok installed gfortran gfortran 4:8.3.0-1 install ok installed gfortran-6 gfortran-6 6.3.0-18+deb9u1 install ok installed gfortran-8 gfortran-8 8.3.0-6 install ok installed ghostscript ghostscript 9.27~dfsg-2+deb10u5 install ok installed gnupg gnupg 2.2.12-1+deb10u2 install ok installed gnupg-agent gnupg-agent 2.2.12-1+deb10u2 install ok installed gnupg-l10n gnupg-l10n 2.2.12-1+deb10u2 install ok installed gnupg-utils gnupg-utils 2.2.12-1+deb10u2 install ok installed gpg gpg 2.2.12-1+deb10u2 install ok installed gpg-agent gpg-agent 2.2.12-1+deb10u2 install ok installed gpg-wks-client gpg-wks-client 2.2.12-1+deb10u2 install ok installed gpg-wks-server gpg-wks-server 2.2.12-1+deb10u2 install ok installed gpgconf gpgconf 2.2.12-1+deb10u2 install ok installed gpgsm gpgsm 2.2.12-1+deb10u2 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed graphviz graphviz 2.40.1-6+deb10u1 install ok installed grep grep 3.3-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.4 install ok installed guile-2.0-libs:amd64 guile-2.0-libs 2.0.13+1-5.1 install ok installed guile-2.2-libs:amd64 guile-2.2-libs 2.2.4+1-2+deb10u1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hmmer hmmer 3.2.1+dfsg-1 install ok installed hostname hostname 3.21 install ok installed hyphy-common hyphy-common 2.3.14+dfsg-1 install ok installed hyphy-mpi hyphy-mpi 2.3.14+dfsg-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 22.1-1 install ok installed icu-devtools icu-devtools 63.1-6+deb10u3 install ok installed infernal infernal 1.1.2-2 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-5 install ok installed krb5-locales krb5-locales 1.17-3+deb10u4 install ok installed libace-perl libace-perl 1.92-8+b1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libalgorithm-c3-perl libalgorithm-c3-perl 0.10-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-2 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-5+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-3 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-7 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.10-3 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-2 install ok installed libapparmor1:amd64 libapparmor1 2.13.2-10 install ok installed libapr1:amd64 libapr1 1.6.5-1+b1 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-4 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-4 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libarmadillo9 libarmadillo9 1:9.200.7+dfsg-1 install ok installed libarpack2:amd64 libarpack2 3.7.0-2 install ok installed libarray-compare-perl libarray-compare-perl 3.0.2-1 install ok installed libarray-utils-perl libarray-utils-perl 0.5-1 install ok installed libasan3:amd64 libasan3 6.3.0-18+deb9u1 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libassuan0:amd64 libassuan0 2.5.2-1 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.7-4+deb10u1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.7-4+deb10u1 install ok installed libavahi-common3:amd64 libavahi-common3 0.7-4+deb10u1 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.24-1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.22-1+b1 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.720-2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.2-3 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.2-4 install ok installed libbit-vector-perl libbit-vector-perl 7.4-1+b5 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas-dev:amd64 libblas-dev 3.8.0-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.7-2+deb10u1 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-1+b3 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-9.2~deb10u1 install ok installed libc-ares2:amd64 libc-ares2 1.14.0-1+deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcaf-openmpi-3:amd64 libcaf-openmpi-3 2.4.0-2 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.07-1 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcdt5 libcdt5 2.40.1-6+deb10u1 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.13-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.40-1 install ok installed libcgraph6 libcgraph6 2.40.1-6+deb10u1 install ok installed libcharls2:amd64 libcharls2 2.0.0+dfsg-1 install ok installed libcilkrts5:amd64 libcilkrts5 7.4.0-6 install ok installed libclass-c3-perl libclass-c3-perl 0.34-1 install ok installed libclass-c3-xs-perl libclass-c3-xs-perl 0.14-1+b3 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.32-1 install ok installed libclass-load-perl libclass-load-perl 0.25-1 install ok installed libclass-load-xs-perl libclass-load-xs-perl 0.10-1+b3 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.12-1 install ok installed libclass-tiny-perl libclass-tiny-perl 1.006-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-3+b2 install ok installed libclone-perl libclone-perl 0.41-1+b1 install ok installed libcoarrays-dev:amd64 libcoarrays-dev 2.4.0-2 install ok installed libcoarrays-openmpi-dev:amd64 libcoarrays-openmpi-dev 2.4.0-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.78-1+b4 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-3 install ok installed libcups2:amd64 libcups2 2.2.10-6+deb10u6 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.21.6-5 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.10-6+deb10u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdap25:amd64 libdap25 3.20.3-1 install ok installed libdapclient6v5:amd64 libdapclient6v5 3.20.3-1 install ok installed libdapserver7v5:amd64 libdapserver7v5 3.20.3-1 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1 install ok installed libdata-optlist-perl libdata-optlist-perl 0.110-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b4 install ok installed libdate-manip-perl libdate-manip-perl 6.76-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.7.4-3 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.62-3 install ok installed libdbi-perl:amd64 libdbi-perl 1.642-1+deb10u2 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.20-0+deb10u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdeflate0:amd64 libdeflate0 1.2-1 install ok installed libdevel-callchecker-perl libdevel-callchecker-perl 0.008-1 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-2+b1 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-2+b1 install ok installed libdevel-overloadinfo-perl libdevel-overloadinfo-perl 0.005-1 install ok installed libdevel-partialdump-perl libdevel-partialdump-perl 0.20-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0300-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-3 install ok installed libdigest-md5-file-perl libdigest-md5-file-perl 0.08-1 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdist-checkconflicts-perl libdist-checkconflicts-perl 0.11-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-4 install ok installed libdpkg-perl libdpkg-perl 1.19.8 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.97-1 install ok installed libdrm-common libdrm-common 2.4.97-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.97-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.97-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.97-1 install ok installed libdrm2:amd64 libdrm2 2.4.97-1 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-1 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libegl-mesa0:amd64 libegl-mesa0 18.3.6-2+deb10u1 install ok installed libegl1:amd64 libegl1 1.1.0-1 install ok installed libelf1:amd64 libelf1 0.176-1.1 install ok installed libemail-date-format-perl libemail-date-format-perl 1.005-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libenv-path-perl libenv-path-perl 0.19-2 install ok installed libepsilon1:amd64 libepsilon1 0.9.2+dfsg-4 install ok installed liberror-perl liberror-perl 0.17027-2 install ok installed libeval-closure-perl libeval-closure-perl 0.14-1 install ok installed libevent-2.1-6:amd64 libevent-2.1-6 2.1.8-stable-4 install ok installed libevent-core-2.1-6:amd64 libevent-core-2.1-6 2.1.8-stable-4 install ok installed libevent-pthreads-2.1-6:amd64 libevent-pthreads-2.1-6 2.1.8-stable-4 install ok installed libexception-class-perl libexception-class-perl 1.44-1 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.002001-1 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfabric1 libfabric1 1.6.2-3 install ok installed libfakeroot:amd64 libfakeroot 1.23-1 install ok installed libfcgi-perl libfcgi-perl 0.78-2+b3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfile-basedir-perl libfile-basedir-perl 0.08-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.22-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-3+b5 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-1 install ok installed libfile-grep-perl libfile-grep-perl 0.02-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.29-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.004-1 install ok installed libfile-slurper-perl libfile-slurper-perl 0.012-1 install ok installed libfile-which-perl libfile-which-perl 1.23-1 install ok installed libfindbin-libs-perl libfindbin-libs-perl 2.190.02-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.3-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfreexl1:amd64 libfreexl1 1.0.5-3 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libfyba0:amd64 libfyba0 4.1.1-6 install ok installed libgbm1:amd64 libgbm1 18.3.6-2+deb10u1 install ok installed libgc1c2:amd64 libgc1c2 1:7.6.4-0.4 install ok installed libgcc-6-dev:amd64 libgcc-6-dev 6.3.0-18+deb9u1 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed 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libgl1-mesa-dri 18.3.6-2+deb10u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 18.3.6-2+deb10u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 18.3.6-2+deb10u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libglib2.0-data libglib2.0-data 2.58.3-2+deb10u3 install ok installed libglvnd0:amd64 libglvnd0 1.1.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 18.3.6-2+deb10u1 install ok installed libglx0:amd64 libglx0 1.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls-dane0:amd64 libgnutls-dane0 3.6.7-4+deb10u8 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libgraph-perl libgraph-perl 1:0.9704-1 install ok installed libgraph-readwrite-perl libgraph-readwrite-perl 2.09-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgs9:amd64 libgs9 9.27~dfsg-2+deb10u5 install ok installed libgs9-common libgs9-common 9.27~dfsg-2+deb10u5 install ok installed libgsasl7 libgsasl7 1.8.0-8+deb10u1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4 install ok installed libgvc6 libgvc6 2.40.1-6+deb10u1 install ok installed libgvpr2 libgvpr2 2.40.1-6+deb10u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.13-4 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhmsbeagle1v5 libhmsbeagle1v5 3.1.2+dfsg-6 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1+b1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libhts2:amd64 libhts2 1.9-12~deb10u1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.04-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-3 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhwloc-dev:amd64 libhwloc-dev 1.11.12-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs-dev:amd64 libibverbs-dev 22.1-1 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu-dev:amd64 libicu-dev 63.1-6+deb10u3 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-14 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libio-all-perl libio-all-perl 0.87-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b5 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.060-3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20180523.0-1 install ok installed libipc-shareable-perl libipc-shareable-perl 0.61-2 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4+b3 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.25-4 install ok installed libisl15:amd64 libisl15 0.18-1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjansson4:amd64 libjansson4 2.12-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.16-1+deb10u1 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg-dev libjpeg-dev 1:1.5.2-2+deb10u1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:1.5.2-2+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-d3 libjs-d3 3.5.17-2 install ok installed libjs-es5-shim libjs-es5-shim 4.5.12-1 install ok installed libjs-highlight.js libjs-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.19+dfsg-1 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5 install ok installed libjs-json libjs-json 0~20180723-2 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-3 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.5.3+dfsg-1 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4 install ok installed libjson-c3:amd64 libjson-c3 0.12.1+ds-2+deb10u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkmlbase1:amd64 libkmlbase1 1.3.0-7 install ok installed libkmlconvenience1:amd64 libkmlconvenience1 1.3.0-7 install ok installed libkmldom1:amd64 libkmldom1 1.3.0-7 install ok installed libkmlengine1:amd64 libkmlengine1 1.3.0-7 install ok installed libkmlregionator1:amd64 libkmlregionator1 1.3.0-7 install ok installed libkmlxsd1:amd64 libkmlxsd1 1.3.0-7 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed libkyotocabinet16v5:amd64 libkyotocabinet16v5 1.2.76-4.2+b1 install ok installed liblab-gamut1 liblab-gamut1 2.40.1-6+deb10u1 install ok installed liblapack-dev:amd64 liblapack-dev 3.8.0-2 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b4 install ok installed libllvm7:amd64 libllvm7 1:7.0.1-8+deb10u2 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b4 install ok installed liblog-dispatch-perl liblog-dispatch-perl 2.68-1 install ok installed liblog-log4perl-perl liblog-log4perl-perl 1.49-1 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-9 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-8.1+b2 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma-dev:amd64 liblzma-dev 5.2.4-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-0.1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmail-sendmail-perl libmail-sendmail-perl 0.80-1 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmailutils5:amd64 libmailutils5 1:3.5-4 install ok installed libmariadb3:amd64 libmariadb3 1:10.3.34-0+deb10u1 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmime-lite-perl libmime-lite-perl 3.030-2 install ok installed libmime-tools-perl libmime-tools-perl 5.509-1 install ok installed libmime-types-perl libmime-types-perl 2.17-1 install ok installed libminizip1:amd64 libminizip1 1.1-8+b1 install ok installed libmldbm-perl libmldbm-perl 2.05-2 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1 install ok installed libmodule-runtime-conflicts-perl libmodule-runtime-conflicts-perl 0.003-1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-1 install ok installed libmoo-perl libmoo-perl 2.003004-2 install ok installed libmoose-perl libmoose-perl 2.2011-1+b1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libmro-compat-perl libmro-compat-perl 0.13-1 install ok installed libnamespace-autoclean-perl libnamespace-autoclean-perl 0.28-1 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-1 install ok installed libncurses-dev:amd64 libncurses-dev 6.1+20181013-2+deb10u2 install ok installed libncurses5:amd64 libncurses5 6.1+20181013-2+deb10u2 install ok installed libncurses5-dev:amd64 libncurses5-dev 6.1+20181013-2+deb10u2 install ok installed libncurses6:amd64 libncurses6 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libnpth0:amd64 libnpth0 1.6-1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss3:amd64 libnss3 2:3.42.1-1+deb10u5 install ok installed libntlm0:amd64 libntlm0 1.5-1+deb10u1 install ok installed libnuma-dev:amd64 libnuma-dev 2.0.12-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-1 install ok installed libodbc1:amd64 libodbc1 2.3.6-0.1 install ok installed libogdi3.2 libogdi3.2 3.2.1+ds-4 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-2+deb10u1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.3.0-2+deb10u2 install ok installed libopenmpi-dev:amd64 libopenmpi-dev 3.1.3-11 install ok installed libopenmpi2:amd64 libopenmpi2 2.0.2-2 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-11 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b7 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b7 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpackage-deprecationmanager-perl libpackage-deprecationmanager-perl 0.17-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.38-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.29-1 install ok installed libpadwalker-perl libpadwalker-perl 2.3-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libparams-classify-perl libparams-classify-perl 0.015-1+b1 install ok installed libparams-util-perl libparams-util-perl 1.07-3+b4 install ok installed libparams-validate-perl libparams-validate-perl 1.29-1+b1 install ok installed libparams-validationcompiler-perl libparams-validationcompiler-perl 0.30-1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-2 install ok installed libparse-yapp-perl libparse-yapp-perl 1.21-2 install ok installed libpathplan4 libpathplan4 2.40.1-6+deb10u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre16-3:amd64 libpcre16-3 2:8.39-12 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.39-12 install ok installed libpcre32-3:amd64 libpcre32-3 2:8.39-12 install ok installed libpcrecpp0v5:amd64 libpcrecpp0v5 2:8.39-12 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libperlio-utf8-strict-perl libperlio-utf8-strict-perl 0.007-2+b1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpmix2:amd64 libpmix2 3.1.2-3 install ok installed libpng-dev:amd64 libpng-dev 1.6.36-6 install ok installed libpng-tools libpng-tools 1.6.36-6 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpoppler82:amd64 libpoppler82 0.71.0-5 install ok installed libpopt0:amd64 libpopt0 1.16-12 install ok installed libpostscript-perl libpostscript-perl 0.06-3 install ok installed libpq5:amd64 libpq5 11.16-0+deb10u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libprocps7:amd64 libprocps7 2:3.3.15-2 install ok installed libproj13:amd64 libproj13 5.2.0-1 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7:amd64 libpython2.7 2.7.16-2+deb10u1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libqhull7:amd64 libqhull7 2015.2-4 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libreadline-dev:amd64 libreadline-dev 7.0-5 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libreadonly-perl libreadonly-perl 2.050-1 install ok installed libref-util-perl libref-util-perl 0.204-1 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-1+b1 install ok installed librole-tiny-perl librole-tiny-perl 2.000006-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u8 install ok installed libruby2.5:amd64 libruby2.5 2.5.5-3+deb10u4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libscalar-list-utils-perl libscalar-list-utils-perl 1:1.50-1+b1 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsensors-config libsensors-config 1:3.5.0-3 deinstall ok config-files libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsensors5:amd64 libsensors5 1:3.5.0-3 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-2 install ok installed libspatialite7:amd64 libspatialite7 4.3.0a-5+b2 install ok installed libspecio-perl libspecio-perl 0.43-1 install ok installed libspiffy-perl libspiffy-perl 0.46-1 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0702-1 install ok installed libstdc++-6-dev:amd64 libstdc++-6-dev 6.3.0-18+deb9u1 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libstrictures-perl libstrictures-perl 2.000005-1 install ok installed libsub-exporter-perl libsub-exporter-perl 0.987-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.14-1+b1 install ok installed libsub-install-perl libsub-install-perl 0.928-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1+b3 install ok installed libsub-quote-perl libsub-quote-perl 2.005001-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.1+dfsg1-4 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-3 install ok installed libsvg-perl libsvg-perl 2.84-1 install ok installed libsys-hostname-long-perl libsys-hostname-long-perl 1.5-1 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtbb2:amd64 libtbb2 2018~U6-4 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libtest-deep-perl libtest-deep-perl 1.128-1 install ok installed libtest-differences-perl libtest-differences-perl 0.65-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-file-perl libtest-file-perl 1.443-1 install ok installed libtest-files-perl libtest-files-perl 0.14-1 install ok installed libtest-most-perl libtest-most-perl 0.35-1 install ok installed libtest-output-perl libtest-output-perl 1.031-1 install ok installed libtest-simple-perl libtest-simple-perl 1.302162-1 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-csv-perl libtext-csv-perl 1.99-1 install ok installed libtext-csv-xs-perl libtext-csv-xs-perl 1.38-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtext-glob-perl libtext-glob-perl 0.10-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b7 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb10u1 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.1+20181013-2+deb10u2 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libtool libtool 2.4.6-9 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.31-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libtxc-dxtn-s2tc:amd64 libtxc-dxtn-s2tc 1.0+git20151227-2 install ok installed libtype-tiny-perl libtype-tiny-perl 1.004004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.014-1+b1 install ok installed libubsan0:amd64 libubsan0 7.4.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunbound8:amd64 libunbound8 1.9.0-2+deb10u2 install ok installed libunicode-map-perl libunicode-map-perl 0.112-12+b1 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.1-1+deb10u1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libuv1:amd64 libuv1 1.24.1-1+deb10u1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.62-1+b1 install ok installed libwayland-client0:amd64 libwayland-client0 1.16.0-1 install ok installed libwayland-server0:amd64 libwayland-server0 1.16.0-1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u1 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u1 install ok installed libwrap0:amd64 libwrap0 7.6.q-28 install ok installed libwww-perl libwww-perl 6.36-2 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-7 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.13.1-2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.13.1-2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.13.1-2 install ok installed libxcb-present0:amd64 libxcb-present0 1.13.1-2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.13.1-2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.15-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-3+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.40.1-6+deb10u1 install ok installed libxerces-c3.2:amd64 libxerces-c3.2 3.2.2+debian-1+deb10u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-2 install ok installed libxml-dom-perl libxml-dom-perl 1.44-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-3 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-6 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.96-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-4 install ok installed libxml-perl libxml-perl 0.08-3 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-1 install ok installed libxml-sax-perl libxml-sax-perl 1.00+dfsg-1 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1.1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.44-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-2 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.32-2.2~deb10u1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.76+repack-1 install ok installed libyaml-perl libyaml-perl 1.27-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed littler littler 0.3.6-1 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed lynx lynx 2.8.9rel.1-3+deb10u1 install ok installed lynx-common lynx-common 2.8.9rel.1-3+deb10u1 install ok installed m4 m4 1.4.18-2 install ok installed mafft mafft 7.407-2 install ok installed mailutils mailutils 1:3.5-4 install ok installed mailutils-common mailutils-common 1:3.5-4 install ok installed make make 4.2.1-1.2 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed maq maq 0.7.1-8 install ok installed mariadb-common mariadb-common 1:10.3.34-0+deb10u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mcl mcl 1:14-137+ds-3 install ok installed med-config med-config 3.3 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed mummer mummer 3.23+dfsg-4 install ok installed muscle muscle 1:3.8.1551-2 install ok installed mustang mustang 3.2.3-3 install ok installed mysql-common mysql-common 5.8+1.0.5 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncoils ncoils 2002-7 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed netbase netbase 5.6 install ok installed node-highlight.js node-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed node-normalize.css node-normalize.css 8.0.1-3 install ok installed nodejs nodejs 10.24.0~dfsg-1~deb10u1 install ok installed nodejs-doc nodejs-doc 10.24.0~dfsg-1~deb10u1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed odbcinst odbcinst 2.3.6-0.1 install ok installed odbcinst1debian2:amd64 odbcinst1debian2 2.3.6-0.1 install ok installed openmpi-bin openmpi-bin 3.1.3-11 install ok installed openmpi-common openmpi-common 3.1.3-11 install ok installed openssh-client openssh-client 1:7.9p1-10+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed pandoc pandoc 2.2.1-3+b2 install ok installed pandoc-data pandoc-data 2.2.1-3 install ok installed parallel parallel 20161222-1.1 install ok installed passwd passwd 1:4.5-1.1 install ok installed patch patch 2.7.6-3+deb10u1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-doc perl-doc 5.28.1-6+deb10u1 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed perl-tk perl-tk 1:804.033-2+b3 install ok installed phylip phylip 1:3.697+dfsg-1 install ok installed phyml phyml 3:3.3.20180621-2 install ok installed pinentry-curses pinentry-curses 1.1.0-2 install ok installed pkg-config pkg-config 0.29-6 install ok installed poa poa 2.0+20060928-7 install ok installed poppler-data poppler-data 0.4.9-2 install ok installed prank prank 0.0.170427+dfsg-2 install ok installed primer3 primer3 2.4.0-2 install ok installed probalign probalign 1.4-8 install ok installed probcons probcons 1.12-12 install ok installed procps procps 2:3.3.15-2 install ok installed proda proda 1.0-12 install ok installed proj-bin proj-bin 5.2.0-1 install ok installed proj-data proj-data 5.2.0-1 install ok installed psmisc psmisc 23.2-1+deb10u1 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb10u1 install ok installed python python 2.7.16-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-bs4 python3-bs4 4.7.1-1 install ok installed python3-cachecontrol python3-cachecontrol 0.11.7-1 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-gdal python3-gdal 2.4.0+dfsg-1+b1 install ok installed python3-html5lib python3-html5lib 1.0.1-1 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-isodate python3-isodate 0.6.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2 install ok installed python3-lxml:amd64 python3-lxml 4.3.2-1+deb10u4 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-mistune python3-mistune 0.8.4-1 install ok installed python3-mypy python3-mypy 0.670-2 install ok installed python3-mypy-extensions python3-mypy-extensions 0.4.1-1 install ok installed python3-networkx python3-networkx 2.2-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-olefile python3-olefile 0.46-1 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-prov python3-prov 1.5.2-1 install ok installed python3-psutil python3-psutil 5.5.1-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-rdflib python3-rdflib 4.2.2-2 install ok installed python3-rdflib-jsonld python3-rdflib-jsonld 0.4.0-4 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.15.34-1+b1 install ok installed python3-schema-salad python3-schema-salad 3.0.20181206233650-2 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-shellescape python3-shellescape 3.4.1-3 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-soupsieve python3-soupsieve 1.8+dfsg-1 install ok installed python3-sparqlwrapper python3-sparqlwrapper 1.8.2-0.1 install ok installed python3-typed-ast python3-typed-ast 1.3.1-1 install ok installed python3-typing-extensions python3-typing-extensions 3.7.2-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed r-base-dev r-base-dev 3.5.2-1 install ok installed r-cran-abind r-cran-abind 1.4-5-1.2 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-backports r-cran-backports 1.1.3-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-2 install ok installed r-cran-bindr r-cran-bindr 0.1.1-2 install ok installed r-cran-bindrcpp r-cran-bindrcpp 0.2.2-2 install ok installed r-cran-bit r-cran-bit 1.1-14-1+b1 install ok installed r-cran-bit64 r-cran-bit64 0.9-7-3 install ok installed r-cran-blob r-cran-blob 1.1.1-2 install ok installed r-cran-boot r-cran-boot 1.3-20-2 install ok installed r-cran-class r-cran-class 7.3-15-1 install ok installed r-cran-cli r-cran-cli 1.0.1-1 install ok installed r-cran-cluster r-cran-cluster 2.0.7-1-1+b3 install ok installed r-cran-codetools r-cran-codetools 0.2-16-1 install ok installed r-cran-colorspace r-cran-colorspace 1.4-0+dfsg-1 install ok installed r-cran-crayon r-cran-crayon 1.3.4-4 install ok installed r-cran-data.table r-cran-data.table 1.12.0+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.0.0-2 install ok installed r-cran-dbitest r-cran-dbitest 1.5-2-2 install ok installed r-cran-desc r-cran-desc 1.2.0-2 install ok installed r-cran-dichromat r-cran-dichromat 1:2.0-0-2 install ok installed r-cran-digest r-cran-digest 0.6.18-1 install ok installed r-cran-domc r-cran-domc 1.3.5-2 install ok installed r-cran-dplyr r-cran-dplyr 0.7.8-1 install ok installed r-cran-evaluate r-cran-evaluate 0.13-1 install ok installed r-cran-fansi r-cran-fansi 0.4.0-1 install ok installed r-cran-filehash r-cran-filehash 2.4-1-3 install ok installed r-cran-foreach r-cran-foreach 1.4.4-2 install ok installed r-cran-foreign r-cran-foreign 0.8.71-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.1.0-1 install ok installed r-cran-glue r-cran-glue 1.3.0-1 install ok installed r-cran-gtable r-cran-gtable 0.2.0-3 install ok installed r-cran-hexbin r-cran-hexbin 1.27.2-2+b1 install ok installed r-cran-highr r-cran-highr 0.7+dfsg-1 install ok installed r-cran-hms r-cran-hms 0.4.2-2 install ok installed r-cran-htmltools r-cran-htmltools 0.3.6-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.3+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.4.5.1+dfsg-1 install ok installed r-cran-iterators r-cran-iterators 1.0.10-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.6+dfsg-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-15-3+b4 install ok installed r-cran-knitr r-cran-knitr 1.21+dfsg-2 install ok installed r-cran-labeling r-cran-labeling 0.3-3 install ok installed r-cran-later r-cran-later 0.7.5+dfsg-2 install ok installed r-cran-lattice r-cran-lattice 0.20-38-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.1-3 install ok installed r-cran-littler r-cran-littler 0.3.6-1 install ok installed r-cran-lubridate r-cran-lubridate 1.7.4-2 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-mapproj r-cran-mapproj 1.2.6-2 install ok installed r-cran-maps r-cran-maps 3.3.0-2 install ok installed r-cran-markdown r-cran-markdown 0.9+dfsg-1 install ok installed r-cran-mass r-cran-mass 7.3-51.1-1 install ok installed r-cran-matrix r-cran-matrix 1.2-15-1 install ok installed r-cran-memoise r-cran-memoise 1.1.0-2 install ok installed r-cran-mgcv r-cran-mgcv 1.8-27-1 install ok installed r-cran-mime r-cran-mime 0.6-1 install ok installed r-cran-mockery r-cran-mockery 0.4.1.1+dfsg-1 install ok installed r-cran-mockr r-cran-mockr 0.1-2 install ok installed r-cran-multicore r-cran-multicore 0.2-1+b2 install ok installed r-cran-munsell r-cran-munsell 0.5.0-1 install ok installed r-cran-nlme r-cran-nlme 3.1.137-1+b3 install ok installed r-cran-nnet r-cran-nnet 7.3-12-2+b2 install ok installed r-cran-pillar r-cran-pillar 1.3.1-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-plyr r-cran-plyr 1.8.4-2 install ok installed r-cran-png r-cran-png 0.1-7-3 install ok installed r-cran-praise r-cran-praise 1.0.0-3 install ok installed r-cran-prettyunits r-cran-prettyunits 1.0.2-3 install ok installed r-cran-promises r-cran-promises 1.0.1-2 install ok installed r-cran-purrr r-cran-purrr 0.3.0-1 install ok installed r-cran-r6 r-cran-r6 2.4.0-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-2 install ok installed r-cran-rcpp r-cran-rcpp 1.0.0-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.3-2 install ok installed r-cran-rlang r-cran-rlang 0.3.1-2 install ok installed r-cran-rmarkdown r-cran-rmarkdown 1.11+dfsg-1 install ok installed r-cran-rpart r-cran-rpart 4.1-13-1+b1 install ok installed r-cran-rprojroot r-cran-rprojroot 1.3-2-2 install ok installed r-cran-rsqlite r-cran-rsqlite 2.1.1-2+b1 install ok installed r-cran-runit r-cran-runit 0.4.32-2 install ok installed r-cran-scales r-cran-scales 1.0.0-2 install ok installed r-cran-shiny r-cran-shiny 1.2.0+dfsg-1 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-2 install ok installed r-cran-sp r-cran-sp 1:1.3-1-1 install ok installed r-cran-spatial r-cran-spatial 7.3-11-2+b2 install ok installed r-cran-stringi r-cran-stringi 1.2.4-2 install ok installed r-cran-stringr r-cran-stringr 1.4.0-1 install ok installed r-cran-survival r-cran-survival 2.43-3-1 install ok installed r-cran-testit r-cran-testit 0.9-1 install ok installed r-cran-testthat r-cran-testthat 2.0.1-1 install ok installed r-cran-tibble r-cran-tibble 2.0.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 0.2.5-1 install ok installed r-cran-tikzdevice r-cran-tikzdevice 0.12-1 install ok installed r-cran-tinytex r-cran-tinytex 0.10-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-1+b1 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-3 install ok installed r-cran-withr r-cran-withr 2.1.2-3 install ok installed r-cran-xfun r-cran-xfun 0.4-1 install ok installed r-cran-xml2 r-cran-xml2 1.2.0-3 install ok installed r-cran-xtable r-cran-xtable 1:1.8-3-1 install ok installed r-cran-yaml r-cran-yaml 2.2.0-1 install ok installed r-doc-html r-doc-html 3.5.2-1 install ok installed r-recommended r-recommended 3.5.2-1 install ok installed rake rake 12.3.1-3+deb10u1 install ok installed raxml raxml 8.2.12+dfsg-1 install ok installed readline-common readline-common 7.0-5 install ok installed rename rename 1.10-1 install ok installed roary roary 3.12.0+dfsg-2 install ok installed ruby ruby 1:2.5.1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.2.1-1 install ok installed ruby-minitest ruby-minitest 5.11.3-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.1-1 install ok installed ruby-test-unit ruby-test-unit 3.2.8-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u8 install ok installed ruby2.5 ruby2.5 2.5.5-3+deb10u4 install ok installed rubygems-integration rubygems-integration 1.11+deb10u1 install ok installed samtools samtools 1.9-4 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.10-1 install ok installed sim4 sim4 0.0.20121010-5 install ok installed sysstat sysstat 12.0.3-2 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed t-coffee t-coffee 12.00.7fb08c2-4 install ok installed tar tar 1.30+dfsg-6 install ok installed tcpd tcpd 7.6.q-28 install ok installed tigr-glimmer tigr-glimmer 3.02b-2 install ok installed tm-align tm-align 20170708+dfsg-2 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed wise wise 2.4.1-21 install ok installed wise-data wise-data 2.4.1-21 install ok installed x11-common x11-common 1:7.7+19 install ok installed x11-utils x11-utils 7.7+4 install ok installed x11-xserver-utils x11-xserver-utils 7.7+8 install ok installed xauth xauth 1:1.0.10-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-1+deb10u1 6m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 6m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'remove', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'cd-hit', 'cdbs', 'clustalo', 'clustalw', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'dpkg-dev', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-mathjax', 'fonts-noto-mono', 'fsa', 'g++-', 'g++-6', 'g++-8', 'gawk', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-6', 'gfortran-8', 'ghostscript', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsfonts', 'guile-2.0-libs:amd64', 'guile-2.2-libs:amd64', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'icu-devtools', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libarray-utils-perl', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-md5-file-perl', 'libdigest-perl-md5-perl', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepsilon1:amd64', 'liberror-perl', 'libeval-closure-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfcgi-perl', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmoose-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-compare-perl', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstatistics-descriptive-perl', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mcl', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'parallel', 'patch', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'pkg-config', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'r-base-dev', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-scales', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sysstat', 't-coffee', 'tcpd', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'roary'] 6m24.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libsensors4' is not installed, so not removed The following packages will be REMOVED: amap-align apache2-bin autoconf automake autotools-dev bedtools beignet-opencl-icd binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blast2 blends-common bowtie build-essential bwa bzip2 bzip2-doc cd-hit cdbs clustalo clustalw cpp cpp-6 cpp-8 cron cwltool dbus dialign dialign-tx dialign-tx-data dirmngr dpkg-dev emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate fakeroot fasttree file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-mathjax fonts-noto-mono fsa g++ g++-6 g++-8 gawk gcc gcc-6 gcc-7-base gcc-8 gdal-data gfortran gfortran-6 gfortran-8 ghostscript gnupg gnupg-agent gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm graphviz gsfonts guile-2.0-libs guile-2.2-libs hmmer hyphy-common hyphy-mpi ibverbs-providers icu-devtools infernal javascript-common kalign krb5-locales libace-perl libaec0 libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libann0 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarmadillo9 libarpack2 libarray-compare-perl libarray-utils-perl libasan3 libasan5 libassuan0 libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbinutils libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblas-common libblas-dev libblas3 libbrotli1 libbsd-resource-perl libbsd0 libbz2-dev libc-ares2 libc-dev-bin libc6-dev libcache-cache-perl libcaf-openmpi-3 libcairo2 libcapture-tiny-perl libcarp-clan-perl libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcharls2 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libcoarrays-dev libcoarrays-openmpi-dev libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-overloadinfo-perl libdevel-partialdump-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-md5-file-perl libdigest-perl-md5-perl libdist-checkconflicts-perl libdivsufsort3 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 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libjcode-pm-perl libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libjson-c3 libk5crypto3 libkeyutils1 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 libksba8 libkyotocabinet16v5 liblab-gamut1 liblapack-dev liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl libllvm7 liblmdb0 liblocale-gettext-perl liblog-dispatch-perl liblog-log4perl-perl liblsan0 libltdl-dev libltdl7 liblua5.1-0 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmail-sendmail-perl libmailtools-perl libmailutils5 libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmime-lite-perl libmime-tools-perl libmime-types-perl libminizip1 libmldbm-perl libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoo-perl libmoose-perl libmpc3 libmpdec2 libmpfr4 libmpfr6 libmpx2 libmro-compat-perl libnamespace-autoclean-perl libnamespace-clean-perl libncurses-dev libncurses5 libncurses5-dev libncurses6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnode64 libnpth0 libnspr4 libnss3 libntlm0 libnuma-dev libnuma1 libnumber-compare-perl libodbc1 libogdi3.2 libole-storage-lite-perl libopenjp2-7 libopenmpi-dev libopenmpi2 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl 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libssh2-1 libssl1.0.2 libstatistics-descriptive-perl libstdc++-6-dev libstdc++-8-dev libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsuperlu5 libsvg-graph-perl libsvg-perl libsys-hostname-long-perl libsz2 libtask-weaken-perl libtbb2 libtcl8.6 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-simple-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-glob-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libtree-dagnode-perl libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc libtype-tiny-perl libtype-tiny-xs-perl libubsan0 libubsan1 libunbound8 libunicode-map-perl libunistring0 liburi-perl liburiparser1 libuv1 libvariable-magic-perl libwayland-client0 libwayland-server0 libwebp6 libwebpdemux2 libwebpmux3 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.2 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl linux-libc-dev littler lsb-base lynx lynx-common m4 mafft mailutils mailutils-common make manpages manpages-dev maq mariadb-common mcl med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase node-highlight.js node-normalize.css nodejs nodejs-doc ocl-icd-libopencl1 odbcinst odbcinst1debian2 openmpi-bin openmpi-common openssh-client pandoc pandoc-data parallel patch perl perl-doc perl-modules-5.24 perl-modules-5.28 perl-openssl-defaults perl-tk phylip phyml pinentry-curses pkg-config poa poppler-data prank primer3 probalign probcons procps proda proj-bin proj-data psmisc publicsuffix python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal r-base-core r-base-dev r-cran-abind r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-blob r-cran-boot r-cran-class r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dbitest r-cran-desc r-cran-dichromat r-cran-digest r-cran-domc r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-filehash r-cran-foreach r-cran-foreign r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hexbin r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-iterators r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-mockery r-cran-mockr r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-promises r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spatial r-cran-stringi r-cran-stringr r-cran-survival r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-tikzdevice r-cran-tinytex r-cran-utf8 r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml2 r-cran-xtable r-cran-yaml r-doc-html r-recommended rake raxml readline-common rename roary ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.3 ruby2.5 rubygems-integration samtools sgml-base shared-mime-info sim4 sysstat t-coffee tcpd tigr-glimmer tm-align tzdata ucf unzip wise wise-data x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 911 to remove and 0 not upgraded. After this operation, 2633 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69119 files and directories currently installed.) Removing amap-align (2.2+git20080214.600fc29+dfsg-1) ... Removing libapache2-reload-perl (0.13-2) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.10-3) ... Removing apache2-bin (2.4.38-3+deb10u8) ... Removing libopenmpi-dev:amd64 (3.1.3-11) ... Removing libhwloc-dev:amd64 (1.11.12-3) ... Removing libltdl-dev:amd64 (2.4.6-9) ... Removing automake (1:1.16.1-4) ... Removing autoconf (2.69-11) ... Removing libtool (2.4.6-9) ... Removing autotools-dev (20180224.1) ... Removing roary (3.12.0+dfsg-2) ... Removing bedtools (2.27.1+dfsg-4) ... Removing libhmsbeagle1v5 (3.1.2+dfsg-6) ... Removing beignet-opencl-icd:amd64 (1.3.2-6+b10) ... Removing g++-6 (6.3.0-18+deb9u1) ... Removing gfortran-6 (6.3.0-18+deb9u1) ... Removing gcc-6 (6.3.0-18+deb9u1) ... Removing r-base-dev (3.5.2-1) ... Removing bioperl-run (1.7.2-4) ... Removing bioperl (1.7.2-3) ... Removing blast2 (1:2.8.1-1+deb10u1) ... Removing med-config (3.3) ... Removing blends-common (0.7.2) ... Removing bowtie (1.2.2+dfsg-4) ... Removing build-essential (12.6) ... Removing bwa (0.7.17-3) ... Removing dpkg-dev (1.19.8) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing bzip2-doc (1.0.6-9.2~deb10u1) ... Removing cd-hit (4.6.8-2) ... Removing cdbs (0.4.159) ... Removing clustalo (1.2.4-2) ... Removing clustalw (2.1+lgpl-6) ... Removing x11-xserver-utils (7.7+8) ... Removing cpp-6 (6.3.0-18+deb9u1) ... Removing libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Removing libcoarrays-dev:amd64 (2.4.0-2) ... Removing gfortran (4:8.3.0-1) ... Removing exim4 (4.92-8+deb10u6) ... Removing exim4-daemon-light (4.92-8+deb10u6) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing exim4-base (4.92-8+deb10u6) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing cron (3.0pl1-134+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing cwltool (1.0.20181217162649+dfsg-10) ... Removing dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-10) ... Removing dialign-tx (1.0.2-12) ... 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Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/woff/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/svg/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/eot/font-awesome' not empty so not removed Removing r-cran-knitr (1.21+dfsg-2) ... Removing python3-schema-salad (3.0.20181206233650-2) ... Removing fonts-lato (2.0-2) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing libjs-mathjax (2.7.4+dfsg-1) ... 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Removing libdbd-pg-perl (3.7.4-3) ... Removing libdbd-sqlite3-perl:amd64 (1.62-3) ... Removing libdbi-perl:amd64 (1.642-1+deb10u2) ... Removing libnet-dbus-perl (1.1.0-5+b1) ... Removing samtools (1.9-4) ... Removing libhts2:amd64 (1.9-12~deb10u1) ... Removing libdeflate0:amd64 (1.2-1) ... Removing libdevel-lexalias-perl (0.05-2+b1) ... Removing libdevel-caller-perl (2.06-2+b1) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-overloadinfo-perl (0.005-1) ... Removing libdevel-stacktrace-perl (2.0300-1) ... Removing libdevel-symdump-perl (2.18-3) ... Removing libdigest-md5-file-perl (0.08-1) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libmodule-runtime-conflicts-perl (0.003-1) ... Removing libdist-checkconflicts-perl (0.11-1) ... Removing libdivsufsort3:amd64 (2.0.1-4) ... Removing pkg-config (0.29-6) ... Removing libdpkg-perl (1.19.8) ... Removing libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing libdrm-amdgpu1:amd64 (2.4.97-1) ... Removing libegl1:amd64 (1.1.0-1) ... Removing libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing libgbm1:amd64 (18.3.6-2+deb10u1) ... Removing libdrm-intel1:amd64 (2.4.97-1) ... Removing libdrm-nouveau2:amd64 (2.4.97-1) ... Removing libdrm-radeon1:amd64 (2.4.97-1) ... Removing phyml (3:3.3.20180621-2) ... Removing openmpi-bin (3.1.3-11) ... Removing openssh-client (1:7.9p1-10+deb10u2) ... Removing libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libelf1:amd64 (0.176-1.1) ... Removing libmime-lite-perl (3.030-2) ... Removing libemail-date-format-perl (1.005-1) ... Removing libxml-xpath-perl (1.44-1) ... Removing libxml-twig-perl (1:3.50-1.1) ... Removing libxml-dom-xpath-perl (0.14-3) ... Removing libxml-dom-perl (1.44-2) ... Removing libenv-path-perl (0.19-2) ... Removing libepsilon1:amd64 (0.9.2+dfsg-4) ... Removing liberror-perl (0.17027-2) ... Removing libgnutls-dane0:amd64 (3.6.7-4+deb10u8) ... Removing libunbound8:amd64 (1.9.0-2+deb10u2) ... Removing libopenmpi3:amd64 (3.1.3-11) ... Removing libpmix2:amd64 (3.1.2-3) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing python3-mypy (0.670-2) ... Removing python3-distutils (3.7.3-1) ... Removing python3-sparqlwrapper (1.8.2-0.1) ... Removing python3-ruamel.yaml (0.15.34-1+b1) ... Removing python3-bs4 (4.7.1-1) ... Removing python3-soupsieve (1.8+dfsg-1) ... Removing ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing python (2.7.16-1) ... Removing libtype-tiny-perl (1.004004-1) ... Removing libsvg-graph-perl (0.02-3) ... Removing libstatistics-descriptive-perl (3.0702-1) ... Removing liblist-moreutils-perl (0.416-1+b4) ... Removing libexporter-tiny-perl (1.002001-1) ... Removing libopenmpi2:amd64 (2.0.2-2) ... Removing libfabric1 (1.6.2-3) ... Removing libfakeroot:amd64 (1.23-1) ... Removing libfcgi-perl (0.78-2+b3) ... Removing libfile-mimeinfo-perl (0.29-1) ... Removing libfile-desktopentry-perl (0.22-1) ... Removing libfile-basedir-perl (0.08-1) ... Removing libfile-fcntllock-perl (0.22-3+b5) ... Removing libfile-find-rule-perl (0.34-1) ... Removing libfile-grep-perl (0.02-1) ... Removing libtree-dagnode-perl (1.31-1) ... Removing libfile-slurp-tiny-perl (0.004-1) ... Removing libfile-slurper-perl (0.012-1) ... Removing libfile-which-perl (1.23-1) ... Removing libfindbin-libs-perl (2.190.02-1) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing libfontenc1:amd64 (1:1.1.3-1+b2) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing libspatialite7:amd64 (4.3.0a-5+b2) ... Removing libfreexl1:amd64 (1.0.5-3) ... Removing libfreezethaw-perl (0.5001-2) ... Removing libfyba0:amd64 (4.1.1-6) ... Removing libgc1c2:amd64 (1:7.6.4-0.4) ... Removing libgd-perl (2.71-2) ... Removing libgd3:amd64 (2.2.5-5.2) ... Removing rename (1.10-1) ... Removing parallel (20161222-1.1) ... Removing 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Removing 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Removing libmailtools-perl (2.18-1) ... Removing perl-tk (1:804.033-2+b3) ... Removing mafft (7.407-2) ... Removing ruby2.3 (2.3.3-1+deb9u8) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u8) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libgeos-c1v5:amd64 (3.7.1-1) ... Removing libgeos-3.7.1:amd64 (3.7.1-1) ... Removing libgeotiff2:amd64 (1.4.3-1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing tm-align (20170708+dfsg-2) ... Removing r-cran-hexbin (1.27.2-2+b1) ... Removing libgif7:amd64 (5.1.4-3) ... Removing libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Removing wise (2.4.1-21) ... Removing shared-mime-info (1.10-1) ... Removing libglib2.0-data (2.58.3-2+deb10u3) ... Removing libglvnd0:amd64 (1.1.0-1) ... Removing r-cran-data.table (1.12.0+dfsg-1) ... Removing littler (0.3.6-1) ... Removing libgraph-readwrite-perl (2.09-1) ... Removing libgraph-perl (1:0.9704-1) ... Removing libgs9-common (9.27~dfsg-2+deb10u5) ... Removing libgsasl7 (1.8.0-8+deb10u1) ... Removing libpq5:amd64 (11.16-0+deb10u1) ... Removing libgts-bin (0.7.6+darcs121130-4) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libhdf4-0-alt (4.2.13-4) ... Removing libhpdf-2.2.1 (2.2.1-1.1+b1) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.15-1) ... Removing libhttp-daemon-perl (6.01-3) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing python3-prov (1.5.2-1) ... Removing python3-lxml:amd64 (4.3.2-1+deb10u4) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libijs-0.35:amd64 (0.35-14) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libimport-into-perl (1.002005-1) ... Removing libio-all-perl (0.87-1) ... Removing libipc-run-perl (20180523.0-1) ... Removing libio-pty-perl (1:1.08-1.1+b5) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-2+deb10u1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-shareable-perl (0.61-2) ... Removing libipc-sharelite-perl (0.17-4+b3) ... Removing libipc-system-simple-perl (1.25-4) ... Removing libisl15:amd64 (0.18-1) ... Removing libjansson4:amd64 (2.12-1) ... Removing libjbig2dec0:amd64 (0.16-1+deb10u1) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg-dev (1:1.5.2-2+deb10u1) ... Removing libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-d3 (3.5.17-2) ... Removing libjs-es5-shim (4.5.12-1) ... Removing r-cran-highr (0.7+dfsg-1) ... Removing libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Removing libjs-jquery-ui (1.12.1+dfsg-5) ... Removing libjs-jquery-datatables (1.10.19+dfsg-1) ... Removing libjs-json (0~20180723-2) ... Removing libjs-microplugin.js (0.0.3+dfsg-1) ... Removing libjs-modernizr (2.6.2+ds1-3) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing libjs-sifter.js (0.5.3+dfsg-1) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Removing libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Removing libkmlxsd1:amd64 (1.3.0-7) ... Removing libkmlregionator1:amd64 (1.3.0-7) ... Removing libkmlconvenience1:amd64 (1.3.0-7) ... Removing libkmlengine1:amd64 (1.3.0-7) ... Removing libkmldom1:amd64 (1.3.0-7) ... Removing libksba8:amd64 (1.3.5-2) ... Removing libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Removing liblab-gamut1 (2.40.1-6+deb10u1) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing liblocale-gettext-perl (1.07-3+b4) ... Removing liblog-log4perl-perl (1.49-1) ... Removing libodbc1:amd64 (2.3.6-0.1) ... Removing liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing liblzma-dev:amd64 (5.2.4-1+deb10u1) ... Removing liblzo2-2:amd64 (2.10-0.1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmail-sendmail-perl (0.80-1) ... Removing libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Removing libmath-spline-perl (0.02-2) ... Removing libmath-derivative-perl (1.01-1) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libmime-types-perl (2.17-1) ... Removing libmldbm-perl (2.05-2) ... Removing libparams-validate-perl (1.29-1+b1) ... Removing libpackage-deprecationmanager-perl (0.17-1) ... Removing libpackage-stash-perl (0.38-1) ... Removing libmodule-implementation-perl (0.09-1) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Removing libncurses5-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing procps (2:3.3.15-2) ... Removing libnl-route-3-dev:amd64 (3.4.0-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-dev:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libnpth0:amd64 (1.6-1) ... Removing libnss3:amd64 (2:3.42.1-1+deb10u5) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libntlm0:amd64 (1.5-1+deb10u1) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libnumber-compare-perl (0.03-1) ... Removing libogdi3.2 (3.2.1+ds-4) ... Removing libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Removing libossp-uuid-perl (1.6.2-1.5+b7) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Removing libpackage-stash-xs-perl (0.29-1) ... Removing libpadwalker-perl (2.3-1+b1) ... Removing libparams-util-perl (1.07-3+b4) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967015+dfsg-2) ... Removing libparse-yapp-perl (1.21-2) ... Removing libpathplan4 (2.40.1-6+deb10u1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpcre16-3:amd64 (2:8.39-12) ... Removing libpcre32-3:amd64 (2:8.39-12) ... Removing libpcrecpp0v5:amd64 (2:8.39-12) ... Removing libperlio-utf8-strict-perl (0.007-2+b1) ... Removing libpng-tools (1.6.36-6) ... Removing r-cran-tikzdevice (0.12-1) ... Removing r-cran-png (0.1-7-3) ... Removing libpopt0:amd64 (1.16-12) ... Removing libpostscript-perl (0.06-3) ... Removing libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Removing libprocps7:amd64 (2:3.3.15-2) ... Removing proj-bin (5.2.0-1) ... Removing libproj13:amd64 (5.2.0-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing libpython2.7:amd64 (2.7.16-2+deb10u1) ... Removing python-minimal (2.7.16-1) ... Removing libqhull7:amd64 (2015.2-4) ... Removing r-cran-nlme (3.1.137-1+b3) ... Removing libreadonly-perl (2.050-1) ... Removing libref-util-perl (0.204-1) ... Removing libref-util-xs-perl (0.117-1+b1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libspiffy-perl (0.46-1) ... Removing libscalar-list-utils-perl (1:1.50-1+b1) ... Removing sysstat (12.0.3-2) ... Removing libsensors5:amd64 (1:3.5.0-3) ... Removing libsensors-config (1:3.5.0-3) ... Removing libset-scalar-perl (1.29-2) ... Removing m4 (1.4.18-2) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libsort-naturally-perl (1.03-2) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libstrictures-perl (2.000005-1) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.14-1+b1) ... Removing libsub-install-perl (0.928-1) ... Removing libsub-name-perl (0.21-1+b3) ... Removing libsub-quote-perl (2.005001-1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1) ... Removing libsvg-perl (2.84-1) ... Removing libsys-hostname-long-perl (1.5-1) ... Removing libtask-weaken-perl (1.06-1) ... Removing libtest-deep-perl (1.128-1) ... Removing libtest-file-perl (1.443-1) ... Removing libtest-simple-perl (1.302162-1) ... Removing libtext-csv-perl (1.99-1) ... Removing libtext-csv-xs-perl (1.38-1) ... Removing libtext-glob-perl (0.10-1) ... Removing libtext-iconv-perl (1.7-5+b7) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... Removing libtype-tiny-xs-perl (0.014-1+b1) ... Removing libunicode-map-perl (0.112-12+b1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing r-cran-httpuv (1.4.5.1+dfsg-1) ... Removing libuv1:amd64 (1.24.1-1+deb10u1) ... Removing libvariable-magic-perl (0.62-1+b1) ... Removing libwayland-client0:amd64 (1.16.0-1) ... Removing libwayland-server0:amd64 (1.16.0-1) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Removing tcpd (7.6.q-28) ... Removing libwrap0:amd64 (7.6.q-28) ... Removing xauth (1:1.0.10-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libx11-protocol-perl (0.56-7) ... Removing libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb-xfixes0:amd64 (1.13.1-2) ... Removing libxcb-dri2-0:amd64 (1.13.1-2) ... Removing libxcb-dri3-0:amd64 (1.13.1-2) ... Removing libxcb-glx0:amd64 (1.13.1-2) ... Removing libxcb-present0:amd64 (1.13.1-2) ... Removing libxcb-shape0:amd64 (1.13.1-2) ... Removing libxcb-sync1:amd64 (1.13.1-2) ... Removing libxcomposite1:amd64 (1:0.4.4-2) ... Removing libxcursor1:amd64 (1:1.1.15-2) ... Removing libxdamage1:amd64 (1:1.1.4-3+b3) ... Removing libxdot4 (2.40.1-6+deb10u1) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxinerama1:amd64 (2:1.1.4-2) ... Removing libxml-sax-writer-perl (0.57-1) ... Removing libxml-filter-buffertext-perl (1.01-6) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-libxslt-perl (1.96-1+b1) ... Removing libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-1) ... Removing libxml-perl (0.08-3) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.09-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing python3-yaml (3.13-2) ... Removing libyaml-libyaml-perl (0.76+repack-1) ... Removing libyaml-perl (1.27-1) ... Removing lynx-common (2.8.9rel.1-3+deb10u1) ... Removing mailutils-common (1:3.5-4) ... Removing make (4.2.1-1.2) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing maq (0.7.1-8) ... Removing mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing mcl (1:14-137+ds-3) ... Removing menu (2.1.47+b1) ... Removing muscle (1:3.8.1551-2) ... Removing mustang (3.2.3-3) ... Removing mysql-common (5.8+1.0.5) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing ncoils (2002-7) ... Removing node-normalize.css (8.0.1-3) ... Removing nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing openmpi-common (3.1.3-11) ... Removing pandoc-data (2.2.1-3) ... Removing patch (2.7.6-3+deb10u1) ... Removing perl-doc (5.28.1-6+deb10u1) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing phylip (1:3.697+dfsg-1) ... Removing poa (2.0+20060928-7) ... Removing poppler-data (0.4.9-2) ... Removing prank (0.0.170427+dfsg-2) ... Removing primer3 (2.4.0-2) ... Removing probalign (1.4-8) ... Removing probcons (1.12-12) ... Removing proda (1.0-12) ... Removing proj-data (5.2.0-1) ... Removing psmisc (23.2-1+deb10u1) ... Removing publicsuffix (20220811.1734-0+deb10u1) ... Removing python2-minimal (2.7.16-1) ... Removing python3-cachecontrol (0.11.7-1) ... Removing python3-requests (2.21.0-1) ... Removing python3-certifi (2018.8.24-1) ... Removing python3-chardet (3.0.4-3) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-networkx (2.2-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-html5lib (1.0.1-1) ... Removing python3-idna (2.6-1) ... Removing python3-rdflib-jsonld (0.4.0-4) ... Removing python3-rdflib (4.2.2-2) ... Removing python3-isodate (0.6.0-1) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-lockfile (1:0.12.2-2) ... Removing python3-mistune (0.8.4-1) ... Removing python3-mypy-extensions (0.4.1-1) ... Removing python3-olefile (0.46-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-psutil (5.5.1-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-shellescape (3.4.1-3) ... Removing python3-urllib3 (1.24.1-1) ... Removing python3-six (1.12.0-1) ... Removing python3-typed-ast (1.3.1-1) ... Removing python3-typing-extensions (3.7.2-1) ... Removing python3-webencodings (0.5.1-1) ... Removing r-cran-rsqlite (2.1.1-2+b1) ... Removing r-cran-dbitest (1.5-2-2) ... Removing r-cran-blob (1.1.1-2) ... Removing r-cran-prettyunits (1.0.2-3) ... Removing r-cran-dplyr (0.7.8-1) ... Removing r-cran-desc (1.2.0-2) ... Removing r-cran-rprojroot (1.3-2-2) ... Removing r-cran-backports (1.1.3-1) ... Removing r-cran-base64enc (0.1-3-2) ... Removing r-cran-bindrcpp (0.2.2-2) ... Removing r-cran-bindr (0.1.1-2) ... Removing r-cran-bit64 (0.9-7-3) ... Removing r-cran-bit (1.1-14-1+b1) ... Removing r-cran-boot (1.3-20-2) ... Removing r-cran-class (7.3-15-1) ... Removing r-cran-tibble (2.0.1-1) ... Removing r-cran-pillar (1.3.1-1) ... Removing r-cran-cluster (2.0.7-1-1+b3) ... Removing r-cran-domc (1.3.5-2) ... Removing r-cran-foreach (1.4.4-2) ... Removing r-cran-codetools (0.2-16-1) ... Removing r-cran-scales (1.0.0-2) ... Removing r-cran-munsell (0.5.0-1) ... Removing r-cran-colorspace (1.4-0+dfsg-1) ... Removing r-cran-mockery (0.4.1.1+dfsg-1) ... Removing r-cran-testthat (2.0.1-1) ... Removing r-cran-dbi (1.0.0-2) ... Removing r-cran-dichromat (1:2.0-0-2) ... Removing r-cran-memoise (1.1.0-2) ... Removing r-cran-htmlwidgets (1.3+dfsg-1) ... Removing r-cran-htmltools (0.3.6-2) ... Removing r-cran-digest (0.6.18-1) ... Removing r-cran-evaluate (0.13-1) ... Removing r-cran-fansi (0.4.0-1) ... Removing r-cran-filehash (2.4-1-3) ... Removing r-cran-foreign (0.8.71-1) ... Removing r-cran-tidyselect (0.2.5-1) ... Removing r-cran-reshape2 (1.4.3-2) ... Removing r-cran-gtable (0.2.0-3) ... Removing r-cran-hms (0.4.2-2) ... Removing r-cran-iterators (1.0.10-1) ... Removing r-cran-jsonlite (1.6+dfsg-1) ... Removing r-cran-kernsmooth (2.23-15-3+b4) ... Removing r-cran-labeling (0.3-3) ... Removing r-cran-promises (1.0.1-2) ... Removing r-cran-later (0.7.5+dfsg-2) ... Removing r-cran-sp (1:1.3-1-1) ... Removing r-cran-lattice (0.20-38-1) ... Removing r-cran-mockr (0.1-2) ... Removing r-cran-lazyeval (0.2.1-3) ... Removing r-cran-lubridate (1.7.4-2) ... Removing r-cran-purrr (0.3.0-1) ... Removing r-cran-mapproj (1.2.6-2) ... Removing r-cran-maps (3.3.0-2) ... Removing r-cran-markdown (0.9+dfsg-1) ... Removing r-cran-mass (7.3-51.1-1) ... Removing r-cran-mime (0.6-1) ... Removing r-cran-multicore (0.2-1+b2) ... Removing r-cran-nnet (7.3-12-2+b2) ... Removing r-cran-pkgconfig (2.0.2-1) ... Removing r-cran-plyr (1.8.4-2) ... Removing r-cran-praise (1.0.0-3) ... Removing r-cran-r6 (2.4.0-1) ... Removing r-cran-rcolorbrewer (1.1-2-2) ... Removing r-cran-rlang (0.3.1-2) ... Removing r-cran-runit (0.4.32-2) ... Removing r-cran-sourcetools (0.1.7-2) ... Removing r-cran-spatial (7.3-11-2+b2) ... Removing r-cran-testit (0.9-1) ... Removing r-cran-tinytex (0.10-1) ... Removing r-cran-utf8 (1.1.4-1+b1) ... Removing r-cran-viridislite (0.3.0-3) ... Removing r-cran-withr (2.1.2-3) ... Removing r-cran-xfun (0.4-1) ... Removing r-cran-xtable (1:1.8-3-1) ... Removing r-cran-yaml (2.2.0-1) ... Removing r-doc-html (3.5.2-1) ... Removing raxml (8.2.12+dfsg-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing sim4 (0.0.20121010-5) ... Removing t-coffee (12.00.7fb08c2-4) ... Removing tigr-glimmer (3.02b-2) ... Removing wise-data (2.4.1-21) ... Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing g++ (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing r-cran-rcpp (1.0.0-1) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing g++-8 (8.3.0-6) ... Removing libmro-compat-perl (0.13-1) ... Removing libclass-c3-perl (0.34-1) ... Removing libalgorithm-c3-perl (0.10-1) ... Removing libalgorithm-diff-perl (1.19.03-2) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing libcups2:amd64 (2.2.10-6+deb10u6) ... Removing libavahi-client3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common-data:amd64 (0.7-4+deb10u1) ... Removing libmodule-runtime-perl (0.016-1) ... Removing libparams-classify-perl (0.015-1+b1) ... Removing libdevel-callchecker-perl (0.008-1) ... Removing libb-hooks-op-check-perl (0.22-1+b1) ... Removing libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Removing libdrm2:amd64 (2.4.97-1) ... Removing libdrm-common (2.4.97-1) ... Removing libdynaloader-functions-perl (0.003-1) ... Removing libxml-parser-perl (2.44-4) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing r-cran-littler (0.3.6-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... dpkg: warning: while removing libjs-jquery, directory '/usr/share/javascript' not empty so not removed Removing libkmlbase1:amd64 (1.3.0-7) ... Removing libminizip1:amd64 (1.1-8+b1) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing liburiparser1:amd64 (0.9.1-1+deb10u1) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing mime-support (3.62) ... Removing r-cran-cli (1.0.1-1) ... Removing r-cran-crayon (1.3.4-4) ... Removing r-cran-stringr (1.4.0-1) ... Removing r-cran-glue (1.3.0-1) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing r-cran-stringi (1.2.4-2) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp (4:8.3.0-1) ... Removing cpp-8 (8.3.0-6) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing r-cran-assertthat (0.2.0-2) ... Removing r-base-core (3.5.2-1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing tzdata (2021a-0+deb10u6) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-liberation (1:1.07.4-9) ... dpkg: warning: while removing fonts-liberation, directory '/usr/share/fonts/truetype/liberation' not empty so not removed Removing libblas3:amd64 (3.8.0-2) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing ucf (3.0038+nmu1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing libwww-perl (6.36-2) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.04-1) ... Removing rake (12.3.1-3+deb10u1) ... Removing ruby (1:2.5.1) ... Removing ruby2.5 (2.5.5-3+deb10u4) ... Removing libruby2.5:amd64 (2.5.5-3+deb10u4) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.04-1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing libio-socket-ssl-perl (2.060-3) ... Removing odbcinst1debian2:amd64 (2.3.6-0.1) ... Removing odbcinst (2.3.6-0.1) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing libnet-http-perl (6.18-1) ... Removing libnet-ssleay-perl (1.85-2+deb10u1) ... Removing libreadline7:amd64 (7.0-5) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing netbase (5.6) ... Removing perl-openssl-defaults:amd64 (3) ... Removing readline-common (7.0-5) ... Removing ruby-did-you-mean (1.2.1-1) ... Removing ruby-minitest (5.11.3-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.2.8-1) ... Removing ruby-power-assert (1.1.1-1) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing rubygems-integration (1.11+deb10u1) ... Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2+deb10u1) ... Removing liburi-perl (1.76-1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 6m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'remove', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'cd-hit', 'cdbs', 'clustalo', 'clustalw', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'dpkg-dev', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-mathjax', 'fonts-noto-mono', 'fsa', 'g++-', 'g++-6', 'g++-8', 'gawk', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-6', 'gfortran-8', 'ghostscript', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsfonts', 'guile-2.0-libs:amd64', 'guile-2.2-libs:amd64', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'icu-devtools', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libarray-utils-perl', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-md5-file-perl', 'libdigest-perl-md5-perl', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepsilon1:amd64', 'liberror-perl', 'libeval-closure-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfcgi-perl', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmoose-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-compare-perl', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstatistics-descriptive-perl', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mcl', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'parallel', 'patch', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'pkg-config', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'r-base-dev', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-scales', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sysstat', 't-coffee', 'tcpd', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'roary'] 6m24.0s INFO: Running scripts post_remove 6m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_remove_exceptions'] 6m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_remove_exceptions'] 6m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--purge', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'cd-hit', 'cdbs', 'clustalo', 'clustalw', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'dpkg-dev', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-mathjax', 'fonts-noto-mono', 'fsa', 'g++', 'g++-6', 'g++-8', 'gawk', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-6', 'gfortran-8', 'ghostscript', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsfonts', 'guile-2.0-libs:amd64', 'guile-2.2-libs:amd64', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'icu-devtools', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libarray-utils-perl', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-md5-file-perl', 'libdigest-perl-md5-perl', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepsilon1:amd64', 'liberror-perl', 'libeval-closure-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfcgi-perl', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmoose-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-compare-perl', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstatistics-descriptive-perl', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mcl', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'parallel', 'patch', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'pkg-config', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'r-base-dev', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-scales', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sysstat', 't-coffee', 'tcpd', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 6m26.8s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove apache2-bin which isn't installed (Reading database ... 5317 files and directories currently installed.) Purging configuration files for autoconf (2.69-11) ... dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed Purging configuration files for beignet-opencl-icd:amd64 (1.3.2-6+b10) ... dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed Purging configuration files for blends-common (0.7.2) ... dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed dpkg: warning: ignoring request to remove cd-hit which isn't installed dpkg: warning: ignoring request to remove cdbs which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-6) ... dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-6 which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed Purging configuration files for cron (3.0pl1-134+deb10u1) ... dpkg: warning: ignoring request to remove cwltool which isn't installed Purging configuration files for dbus (1.12.20-0+deb10u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed Purging configuration files for dirmngr (2.2.12-1+deb10u2) ... Purging configuration files for dpkg-dev (1.19.8) ... dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed Purging configuration files for exim4 (4.92-8+deb10u6) ... Purging configuration files for exim4-base (4.92-8+deb10u6) ... Purging configuration files for exim4-config (4.92-8+deb10u6) ... dpkg-statoverride: warning: no override present Purging configuration files for exim4-daemon-light (4.92-8+deb10u6) ... dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove fakeroot which isn't installed dpkg: warning: ignoring request to remove fasttree which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: while removing fonts-droid-fallback, directory '/usr/share/fonts/truetype/droid' not empty so not removed dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed Purging configuration files for fonts-noto-mono (20181227-1) ... dpkg: warning: while removing fonts-noto-mono, directory '/usr/share/fonts/truetype/noto' not empty so not removed dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-6 which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed Purging configuration files for gawk (1:4.2.1+dfsg-1) ... dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-6 which isn't installed dpkg: warning: ignoring request to remove gcc-7-base which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed dpkg: warning: ignoring request to remove gdal-data which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-6 which isn't installed dpkg: warning: ignoring request to remove gfortran-8 which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.2.12-1+deb10u2) ... dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed dpkg: warning: ignoring request to remove gpg which isn't installed Purging configuration files for gpg-agent (2.2.12-1+deb10u2) ... dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpg-wks-server which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed Purging configuration files for graphviz (2.40.1-6+deb10u1) ... Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... dpkg: warning: while removing gsfonts, directory '/usr/share/fonts/type1/gsfonts' not empty so not removed dpkg: warning: ignoring request to remove guile-2.0-libs which isn't installed dpkg: warning: ignoring request to remove guile-2.2-libs which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove hyphy-mpi which isn't installed Purging configuration files for ibverbs-providers:amd64 (22.1-1) ... dpkg: warning: ignoring request to remove icu-devtools which isn't installed dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-c3-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.10-3) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarmadillo9 which isn't installed dpkg: warning: ignoring request to remove libarpack2 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libarray-utils-perl which isn't installed dpkg: warning: ignoring request to remove libasan3 which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libassuan0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-endofscope-perl which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas-dev which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcaf-openmpi-3 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcharls2 which isn't installed dpkg: warning: ignoring request to remove libcilkrts5 which isn't installed dpkg: warning: ignoring request to remove libclass-c3-perl which isn't installed dpkg: warning: ignoring request to remove libclass-c3-xs-perl which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-perl which isn't installed dpkg: warning: ignoring request to remove libclass-load-xs-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed Purging configuration files for libcoarrays-dev:amd64 (2.4.0-2) ... dpkg: warning: ignoring request to remove libcoarrays-openmpi-dev which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcupsfilters1 which isn't installed dpkg: warning: ignoring request to remove libcupsimage2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdap25 which isn't installed dpkg: warning: ignoring request to remove libdapclient6v5 which isn't installed dpkg: warning: ignoring request to remove libdapserver7v5 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-callchecker-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-lexalias-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-overloadinfo-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-partialdump-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-md5-file-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libdist-checkconflicts-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libemail-date-format-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libenv-path-perl which isn't installed dpkg: warning: ignoring request to remove libepsilon1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libeval-closure-perl which isn't installed dpkg: warning: ignoring request to remove libevent-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed Purging configuration files for libfakeroot:amd64 (1.23-1) ... dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-desktopentry-perl which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfile-find-rule-perl which isn't installed dpkg: warning: ignoring request to remove libfile-grep-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-mimeinfo-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurper-perl which isn't installed dpkg: warning: ignoring request to remove libfile-which-perl which isn't installed dpkg: warning: ignoring request to remove libfindbin-libs-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreexl1 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libfyba0 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgc1c2 which isn't installed dpkg: warning: ignoring request to remove libgcc-6-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdal20 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgeos-3.7.1 which isn't installed dpkg: warning: ignoring request to remove libgeos-c1v5 which isn't installed dpkg: warning: ignoring request to remove libgeotiff2 which isn't installed dpkg: warning: ignoring request to remove libgfortran-6-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran-8-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... dpkg: warning: ignoring request to remove libgl1-mesa-glx which isn't installed dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgnutls-dane0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraph-readwrite-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove 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Purging configuration files for lynx-common (2.8.9rel.1-3+deb10u1) ... dpkg: warning: ignoring request to remove m4 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove mailutils which isn't installed dpkg: warning: ignoring request to remove mailutils-common which isn't installed dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-common (1:10.3.34-0+deb10u1) ... dpkg: warning: ignoring request to remove mcl which isn't installed Purging configuration files for med-config (3.3) ... Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.0.5) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (5.6) ... dpkg: warning: ignoring request to remove node-highlight.js which isn't installed dpkg: warning: ignoring request to remove node-normalize.css which isn't installed dpkg: warning: ignoring request to remove nodejs which isn't installed dpkg: warning: ignoring request to remove nodejs-doc which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for odbcinst (2.3.6-0.1) ... dpkg: warning: ignoring request to remove odbcinst1debian2 which isn't installed Purging configuration files for openmpi-bin (3.1.3-11) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:7.9p1-10+deb10u2) ... dpkg: warning: ignoring request to remove pandoc which isn't installed dpkg: warning: ignoring request to remove pandoc-data which isn't installed Purging configuration files for parallel (20161222-1.1) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.28.1-6+deb10u1) ... Purging configuration files for perl-doc (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for pkg-config (0.29-6) ... dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.9-2) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.4.0-2) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed Purging configuration files for procps (2:3.3.15-2) ... dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed Purging configuration files for psmisc (23.2-1+deb10u1) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gdal which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lockfile which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mistune which isn't installed dpkg: warning: ignoring request to remove python3-mypy which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-rdflib-jsonld which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-shellescape which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-sparqlwrapper which isn't installed dpkg: warning: ignoring request to remove python3-typed-ast which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... Purging configuration files for r-base-core (3.5.2-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-bindr which isn't installed dpkg: warning: ignoring request to remove r-cran-bindrcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dbitest which isn't installed dpkg: warning: ignoring request to remove r-cran-desc which isn't installed dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-domc which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-filehash which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hexbin which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-lubridate which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mapproj which isn't installed dpkg: warning: ignoring request to remove r-cran-maps which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-mockery which isn't installed dpkg: warning: ignoring request to remove r-cran-mockr which isn't installed dpkg: warning: ignoring request to remove r-cran-multicore which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed Purging configuration files for r-cran-rmarkdown (1.11+dfsg-1) ... dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-runit which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-sp which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-testit which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tikzdevice which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml2 which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove ruby2.5 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.10-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed Purging configuration files for sysstat (12.0.3-2) ... dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tcpd which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+19) ... Purging configuration files for x11-utils (7.7+4) ... Purging configuration files for x11-xserver-utils (7.7+8) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 6m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--purge', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'build-essential', 'bwa', 'bzip2', 'bzip2-doc', 'cd-hit', 'cdbs', 'clustalo', 'clustalw', 'cpp', 'cpp-6', 'cpp-8', 'cron', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'dirmngr', 'dpkg-dev', 'emboss', 'emboss-data', 'emboss-lib', 'exim4', 'exim4-base', 'exim4-config', 'exim4-daemon-light', 'exonerate', 'fakeroot', 'fasttree', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-mathjax', 'fonts-noto-mono', 'fsa', 'g++', 'g++-6', 'g++-8', 'gawk', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-6', 'gfortran-8', 'ghostscript', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsfonts', 'guile-2.0-libs:amd64', 'guile-2.2-libs:amd64', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'icu-devtools', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-c3-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libarray-utils-perl', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libcilkrts5:amd64', 'libclass-c3-perl', 'libclass-c3-xs-perl', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-load-perl', 'libclass-load-xs-perl', 'libclass-method-modifiers-perl', 'libclass-tiny-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-optlist-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-overloadinfo-perl', 'libdevel-partialdump-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-md5-file-perl', 'libdigest-perl-md5-perl', 'libdist-checkconflicts-perl', 'libdivsufsort3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libemail-date-format-perl', 'libencode-locale-perl', 'libenv-path-perl', 'libepsilon1:amd64', 'liberror-perl', 'libeval-closure-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfakeroot:amd64', 'libfcgi-perl', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-find-rule-perl', 'libfile-grep-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfile-slurp-tiny-perl', 'libfile-slurper-perl', 'libfile-which-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgc1c2:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls-dane0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraph-readwrite-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgsasl7', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-all-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-shareable-perl', 'libipc-sharelite-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'libkyotocabinet16v5:amd64', 'liblab-gamut1', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblog-dispatch-perl', 'liblog-log4perl-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmail-sendmail-perl', 'libmailtools-perl', 'libmailutils5:amd64', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-lite-perl', 'libmime-tools-perl', 'libmime-types-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-conflicts-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmoose-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libmro-compat-perl', 'libnamespace-autoclean-perl', 'libnamespace-clean-perl', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libntlm0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libnumber-compare-perl', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-deprecationmanager-perl', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparams-util-perl', 'libparams-validate-perl', 'libparams-validationcompiler-perl', 'libparse-recdescent-perl', 'libparse-yapp-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libperlio-utf8-strict-perl', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libscalar-list-utils-perl', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspecio-perl', 'libspiffy-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstatistics-descriptive-perl', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-install-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsys-hostname-long-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-file-perl', 'libtest-files-perl', 'libtest-most-perl', 'libtest-output-perl', 'libtest-simple-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-glob-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan0:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvariable-magic-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwrap0:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'mailutils', 'mailutils-common', 'make', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'mcl', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'parallel', 'patch', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'pinentry-curses', 'pkg-config', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'r-base-dev', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-boot', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-domc', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-runit', 'r-cran-scales', 'r-cran-shiny', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sysstat', 't-coffee', 'tcpd', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 6m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--purge', 'roary'] 6m26.8s DUMP: dpkg: warning: ignoring request to remove roary which isn't installed 6m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--purge', 'roary'] 6m26.8s INFO: Running scripts post_purge 6m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_purge_exceptions'] 6m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_purge_exceptions'] 6m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--purge', '--pending'] 6m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--purge', '--pending'] 6m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--remove', '--pending'] 6m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg', '--remove', '--pending'] 6m26.9s INFO: Running scripts post_test 6m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_test_exceptions'] 6m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'tmp/scripts/post_test_exceptions'] 6m26.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 6m27.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 6m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg-divert', '--list'] 6m27.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 6m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'dpkg-divert', '--list'] 6m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'clean'] 6m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz_cil040', 'apt-get', 'clean'] 6m27.3s DEBUG: Recording chroot state 6m27.7s INFO: Warning: Package purging left files on system: /etc/ca-certificates.conf.dpkg-old not owned /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-mathjax, fonts-font-awesome, fonts-glyphicons-halflings, gsfonts, fonts-noto-mono, fonts-liberation, poppler-data, fonts-lato, fonts-droid-fallback, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/eot/ owned by: fonts-font-awesome /usr/share/fonts/eot/.uuid not owned /usr/share/fonts/eot/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/eot/font-awesome/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/svg/ owned by: fonts-font-awesome /usr/share/fonts/svg/.uuid not owned /usr/share/fonts/svg/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/svg/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-font-awesome, fonts-glyphicons-halflings, fonts-noto-mono, fonts-liberation, fonts-lato, fonts-droid-fallback, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/droid/ owned by: fonts-droid-fallback /usr/share/fonts/truetype/droid/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/noto/ owned by: fonts-noto-mono /usr/share/fonts/truetype/noto/.uuid not owned /usr/share/fonts/type1/ owned by: gsfonts /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/gsfonts/ owned by: gsfonts /usr/share/fonts/type1/gsfonts/.uuid not owned /usr/share/fonts/woff/ owned by: fonts-font-awesome /usr/share/fonts/woff/.uuid not owned /usr/share/fonts/woff/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/woff/font-awesome/.uuid not owned /usr/share/javascript/ owned by: libjs-twitter-bootstrap-datepicker, libjs-prettify, libjs-modernizr, libjs-mathjax, libjs-json, libjs-jquery-ui, libjs-jquery-selectize.js, libjs-microplugin.js, libjs-sifter.js, libjs-jquery-datatables, libjs-highlight.js, libjs-es5-shim, libjs-d3, fonts-mathjax, fonts-font-awesome, libjs-bootstrap, node-normalize.css, libjs-jquery, javascript-common /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned 6m28.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/shm'] 6m28.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/shm'] 6m28.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/console'] 6m28.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/console'] 6m28.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/ptmx'] 6m28.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/ptmx'] 6m28.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/pts'] 6m28.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/dev/pts'] 6m28.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/proc'] 6m28.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz_cil040/proc'] 6m28.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 6m28.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz_cil040'] 6m28.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpz_cil040 6m28.3s INFO: PASS: Upgrading between Debian distributions. 6m28.3s INFO: PASS: All tests. 6m28.3s INFO: piuparts run ends. ret=0 End: 2022-11-26 12:44:05 GMT