Start: 2022-12-17 21:45:52 GMT [stretch] Package: khmer Version: 2.0+dfsg-10 Installed-Size: 23124 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: khmer-common, python3 (>= 3.5~), python3-screed (<< 1.0), libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), python3 (<< 3.6), python3-bz2file, python3:any (>= 3.3.2-2~) Description: in-memory DNA sequence kmer counting, filtering & graph traversal Multi-Arch: same Homepage: http://khmer.readthedocs.org Description-md5: fcb7ec9befc5e3aef9f670bd332040fb Tag: biology::format:fasta, biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, use::analysing, use::comparing, use::filtering Section: science Priority: optional Filename: pool/main/k/khmer/khmer_2.0+dfsg-10_amd64.deb Size: 5979634 MD5sum: c9add769f09302b6104abb1d8997baa8 SHA256: 62d374aa65661a40651d936eb893c3c03361cb61142908f16fa6677db83662f7 [buster] Package: khmer Version: 2.1.2+dfsg-6 Installed-Size: 29563 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: khmer-common, python3 (>= 3.7~), python3-screed (>= 1.0), libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:3.4), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), cython3 (>= 0.26.1), python3 (<< 3.8), python3-bz2file, python3:any Description: in-memory DNA sequence kmer counting, filtering & graph traversal Multi-Arch: foreign Homepage: http://khmer.readthedocs.org Description-md5: fcb7ec9befc5e3aef9f670bd332040fb Tag: biology::format:fasta, biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, use::analysing, use::comparing, use::filtering Section: science Priority: optional Filename: pool/main/k/khmer/khmer_2.1.2+dfsg-6_amd64.deb Size: 6644188 MD5sum: bd505438e8bfd95c2b8fa94e847ca38a SHA256: b44bfca653dc7037db0cfb02d92ea0488b4d7a91e43536479b1091f153560550 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat --apt khmer=2.1.2+dfsg-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat --apt khmer=2.1.2+dfsg-6 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpjs0qu_8j 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpjs0qu_8j 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/proc'] 0m1.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/proc'] 0m1.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/shm'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/shm'] 0m1.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.3s DEBUG: Created policy-rc.d and chmodded it. 0m1.3s DEBUG: Created resolv.conf. 0m1.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpjs0qu_8j/tmp/scripts/ 0m1.3s INFO: Running scripts post_chroot_unpack 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'update'] 0m2.0s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'update'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s INFO: Running scripts post_setup 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_forbid_home'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat 0m3.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m3.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m3.6s INFO: Running scripts is_testable 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s INFO: Running scripts pre_test 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_test_root_password'] 0m3.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_test_root_password'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'show', '--no-all-versions', 'khmer'] 0m3.8s DUMP: Package: khmer Version: 2.0+dfsg-10 Installed-Size: 23124 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: khmer-common, python3 (>= 3.5~), python3-screed (<< 1.0), libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), python3 (<< 3.6), python3-bz2file, python3:any (>= 3.3.2-2~) Description-en: in-memory DNA sequence kmer counting, filtering & graph traversal khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name. Description-md5: fcb7ec9befc5e3aef9f670bd332040fb Multi-Arch: same Homepage: http://khmer.readthedocs.org Tag: biology::format:fasta, biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, use::analysing, use::comparing, use::filtering Section: science Priority: optional Filename: pool/main/k/khmer/khmer_2.0+dfsg-10_amd64.deb Size: 5979634 MD5sum: c9add769f09302b6104abb1d8997baa8 SHA256: 62d374aa65661a40651d936eb893c3c03361cb61142908f16fa6677db83662f7 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'show', '--no-all-versions', 'khmer'] 0m3.8s INFO: apt-cache knows about the following packages: khmer 0m3.8s INFO: Running scripts pre_install 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy'] 0m3.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy', 'khmer'] 0m3.9s DUMP: khmer: Installed: (none) Candidate: 2.0+dfsg-10 Version table: 2.0+dfsg-10 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy', 'khmer'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'install', 'khmer'] 0m9.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: dh-python file khmer-common libexpat1 libgomp1 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libmpdec2 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 libsqlite3-0 libssl1.1 mime-support python3 python3-bz2file python3-minimal python3-screed python3.5 python3.5-minimal readline-common Suggested packages: libdpkg-perl python3-doc python3-tk python3-venv python3.5-venv python3.5-doc binutils binfmt-support readline-doc Recommended packages: javascript-common bzip2 xz-utils The following NEW packages will be installed: dh-python file khmer khmer-common libexpat1 libgomp1 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libmpdec2 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 libsqlite3-0 libssl1.1 mime-support python3 python3-bz2file python3-minimal python3-screed python3.5 python3.5-minimal readline-common 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. Need to get 14.2 MB of archives. After this operation, 62.4 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libpython3.5-minimal amd64 3.5.3-1+deb9u1 [573 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 python3.5-minimal amd64 3.5.3-1+deb9u1 [1691 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 python3-minimal amd64 3.5.3-1 [35.3 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libpython3.5-stdlib amd64 3.5.3-1+deb9u1 [2167 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 python3.5 amd64 3.5.3-1+deb9u1 [229 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libpython3-stdlib amd64 3.5.3-1 [18.6 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 dh-python all 2.20170125 [86.8 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 python3 amd64 3.5.3-1 [21.6 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 khmer-common all 2.0+dfsg-10 [244 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 python3-bz2file all 0.98-1 [7714 B] Get:24 http://deb.debian.org/debian stretch/main amd64 python3-screed all 0.9-2 [71.5 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 khmer amd64 2.0+dfsg-10 [5980 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.2 MB in 0s (73.5 MB/s) Selecting previously unselected package libssl1.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libpython3.5-minimal:amd64. Preparing to unpack .../01-libpython3.5-minimal_3.5.3-1+deb9u1_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../02-libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../03-python3.5-minimal_3.5.3-1+deb9u1_amd64.deb ... Unpacking python3.5-minimal (3.5.3-1+deb9u1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../04-python3-minimal_3.5.3-1_amd64.deb ... Unpacking python3-minimal (3.5.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../05-mime-support_3.60_all.deb ... Unpacking mime-support (3.60) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../06-libmpdec2_2.4.2-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../07-readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../08-libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../09-libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Selecting previously unselected package libpython3.5-stdlib:amd64. Preparing to unpack .../10-libpython3.5-stdlib_3.5.3-1+deb9u1_amd64.deb ... Unpacking libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Selecting previously unselected package python3.5. Preparing to unpack .../11-python3.5_3.5.3-1+deb9u1_amd64.deb ... Unpacking python3.5 (3.5.3-1+deb9u1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../12-libpython3-stdlib_3.5.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.5.3-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../13-dh-python_2.20170125_all.deb ... Unpacking dh-python (2.20170125) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up python3.5-minimal (3.5.3-1+deb9u1) ... Setting up python3-minimal (3.5.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5404 files and directories currently installed.) Preparing to unpack .../00-python3_3.5.3-1_amd64.deb ... Unpacking python3 (3.5.3-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking libmagic-mgc (1:5.30-1+deb9u3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.30-1+deb9u3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.30-1+deb9u3_amd64.deb ... Unpacking file (1:5.30-1+deb9u3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../04-libjs-jquery_3.1.1-2+deb9u1_all.deb ... Unpacking libjs-jquery (3.1.1-2+deb9u1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../05-libjs-underscore_1.8.3~dfsg-1_all.deb ... Unpacking libjs-underscore (1.8.3~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../06-libjs-sphinxdoc_1.4.9-2_all.deb ... Unpacking libjs-sphinxdoc (1.4.9-2) ... Selecting previously unselected package khmer-common. Preparing to unpack .../07-khmer-common_2.0+dfsg-10_all.deb ... Unpacking khmer-common (2.0+dfsg-10) ... Selecting previously unselected package python3-bz2file. Preparing to unpack .../08-python3-bz2file_0.98-1_all.deb ... Unpacking python3-bz2file (0.98-1) ... Selecting previously unselected package python3-screed. Preparing to unpack .../09-python3-screed_0.9-2_all.deb ... Unpacking python3-screed (0.9-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../10-libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package khmer:amd64. Preparing to unpack .../11-khmer_2.0+dfsg-10_amd64.deb ... Unpacking khmer:amd64 (2.0+dfsg-10) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up mime-support (3.60) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libjs-sphinxdoc (1.4.9-2) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up python3.5 (3.5.3-1+deb9u1) ... Setting up libpython3-stdlib:amd64 (3.5.3-1) ... Setting up khmer-common (2.0+dfsg-10) ... Setting up python3 (3.5.3-1) ... Setting up python3-bz2file (0.98-1) ... Setting up dh-python (2.20170125) ... Setting up python3-screed (0.9-2) ... Setting up khmer:amd64 (2.0+dfsg-10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'install', 'khmer'] 0m9.5s INFO: Running scripts post_install 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_install_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_install_exceptions'] 0m9.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m9.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpjs0qu_8j to buster 0m9.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m9.8s INFO: Running scripts pre_distupgrade 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'update'] 0m12.9s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 2s (5802 kB/s) Reading package lists... 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'update'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'upgrade'] 0m19.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages have been kept back: apt bash dash dpkg e2fslibs e2fsprogs khmer khmer-common libapt-pkg5.0 libcomerr2 libgcc1 libgomp1 libncursesw5 libpython3-stdlib libreadline7 libss2 libstdc++6 libtinfo5 login mount ncurses-base ncurses-bin python3 python3-minimal python3-screed util-linux The following packages will be upgraded: adduser base-files base-passwd bsdutils coreutils debconf debian-archive-keyring debianutils dh-python diffutils file findutils gpgv grep gzip hostname init-system-helpers libacl1 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc6 libcap-ng0 libdb5.3 libdebconfclient0 libexpat1 libfdisk1 libgcrypt20 libgpg-error0 libjs-jquery libjs-sphinxdoc libjs-underscore liblz4-1 liblzma5 libmagic-mgc libmagic1 libmount1 libmpdec2 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libssl1.1 libsystemd0 libudev1 libuuid1 mime-support multiarch-support passwd perl-base python3-bz2file readline-common sed sensible-utils sysvinit-utils tar zlib1g 67 upgraded, 0 newly installed, 0 to remove and 26 not upgraded. Need to get 21.6 MB of archives. After this operation, 8068 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:5 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:6 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:7 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:8 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:9 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:10 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:11 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:12 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:13 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:14 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:16 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:17 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:18 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:19 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:36 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:37 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:38 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:39 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:40 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:41 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:48 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:49 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:53 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:54 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:57 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:58 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:66 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:67 http://deb.debian.org/debian buster/main amd64 python3-bz2file all 0.98-2 [7952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.6 MB in 0s (110 MB/s) (Reading database ... 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Unpacking libmpdec2:amd64 (2.4.2-2) over (2.4.2-1) ... Preparing to unpack .../11-libsqlite3-0_3.27.2-3+deb10u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-3+deb10u1) over (3.16.2-5+deb9u1) ... Preparing to unpack .../12-libssl1.1_1.1.1n-0+deb10u3_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u3) over (1.1.0l-1~deb9u1) ... Preparing to unpack .../13-multiarch-support_2.28-10+deb10u1_amd64.deb ... Unpacking multiarch-support (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../14-python3-bz2file_0.98-2_all.deb ... Unpacking python3-bz2file (0.98-2) over (0.98-1) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up readline-common (7.0-5) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u4) ... Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Setting up mime-support (3.62) ... Installing new version of config file /etc/mime.types ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up python3-bz2file (0.98-2) ... Setting up dh-python (3.20190308) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up file (1:5.35-4+deb10u2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'upgrade'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-yf', 'dist-upgrade'] 0m36.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: dh-python libpython3.5-minimal libpython3.5-stdlib python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: ca-certificates cython3 docutils-common fdisk fonts-glyphicons-halflings fonts-liberation gcc-8-base libcom-err2 libext2fs2 libffi6 libgmp10 libgnutls30 libhogweed4 libidn2-0 libjs-bootstrap libncursesw6 libnettle6 libp11-kit0 libpython3.7-minimal libpython3.7-stdlib libseccomp2 libtasn1-6 libtinfo6 libunistring2 libzstd1 openssl python-babel-localedata python3-alabaster python3-babel python3-certifi python3-chardet python3-distutils python3-docutils python3-guzzle-sphinx-theme python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-packaging python3-pkg-resources python3-pygments python3-pyparsing python3-requests python3-roman python3-six python3-sphinx python3-tz python3-urllib3 python3.7 python3.7-minimal sgml-base sphinx-common tzdata xml-core The following packages will be upgraded: apt bash dash dpkg e2fslibs e2fsprogs khmer khmer-common libapt-pkg5.0 libcomerr2 libgcc1 libgomp1 libncursesw5 libpython3-stdlib libreadline7 libss2 libstdc++6 libtinfo5 login mount ncurses-base ncurses-bin python3 python3-minimal python3-screed util-linux 26 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 38.7 MB of archives. After this operation, 99.4 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:14 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:18 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:19 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:20 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:24 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:25 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:27 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:28 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:29 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:30 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:31 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:34 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:36 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:37 http://deb.debian.org/debian buster/main amd64 khmer amd64 2.1.2+dfsg-6 [6644 kB] Get:38 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:39 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:40 http://deb.debian.org/debian buster/main amd64 fonts-liberation all 1:1.07.4-9 [827 kB] Get:41 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:43 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:44 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:45 http://deb.debian.org/debian buster/main amd64 sphinx-common all 1.8.4-1 [500 kB] Get:46 http://deb.debian.org/debian buster/main amd64 python3-alabaster all 0.7.8-1 [18.4 kB] Get:47 http://deb.debian.org/debian buster/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1+deb10u1 [4083 kB] Get:48 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:49 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:50 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get:51 http://deb.debian.org/debian buster/main amd64 python3-babel all 2.6.0+dfsg.1-1+deb10u1 [96.8 kB] Get:52 http://deb.debian.org/debian buster/main amd64 sgml-base all 1.29 [14.8 kB] Get:53 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:54 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get:55 http://deb.debian.org/debian buster/main amd64 python3-roman all 2.0.0-3 [8768 B] Get:56 http://deb.debian.org/debian buster/main amd64 python3-docutils all 0.14+dfsg-4 [378 kB] Get:57 http://deb.debian.org/debian buster/main amd64 python3-imagesize all 1.0.0-1 [4960 B] Get:58 http://deb.debian.org/debian buster/main amd64 python3-markupsafe amd64 1.1.0-1 [14.8 kB] Get:59 http://deb.debian.org/debian buster/main amd64 python3-jinja2 all 2.10-2 [106 kB] Get:60 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:61 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:62 http://deb.debian.org/debian buster/main amd64 python3-packaging all 19.0-1 [20.5 kB] Get:63 http://deb.debian.org/debian buster/main amd64 python3-pygments all 2.3.1+dfsg-1+deb10u2 [594 kB] Get:64 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:65 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:66 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:67 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:68 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:69 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:70 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:71 http://deb.debian.org/debian buster/main amd64 python3-sphinx all 1.8.4-1 [481 kB] Get:72 http://deb.debian.org/debian buster/main amd64 python3-guzzle-sphinx-theme all 0.7.11-4 [1346 kB] Get:73 http://deb.debian.org/debian buster/main amd64 khmer-common all 2.1.2+dfsg-6 [227 kB] Get:74 http://deb.debian.org/debian buster/main amd64 python3-screed all 1.0-3 [71.8 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:76 http://deb.debian.org/debian buster/main amd64 cython3 amd64 0.29.2-2 [1392 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:79 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.7 MB in 0s (123 MB/s) Selecting previously unselected package libtinfo6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5939 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5949 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-4_amd64.deb ... Unpacking bash (5.0-4) over (4.4-5) ... Setting up bash (5.0-4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode Selecting previously unselected package libzstd1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5950 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3+deb10u2_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Selecting previously unselected package libgmp10:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5956 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-4+deb10u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Selecting previously unselected package libnettle6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5962 files and directories currently installed.) Preparing to unpack .../libnettle6_3.4.1-1+deb10u1_amd64.deb ... Unpacking libnettle6:amd64 (3.4.1-1+deb10u1) ... Setting up libnettle6:amd64 (3.4.1-1+deb10u1) ... Selecting previously unselected package libhogweed4:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5970 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.4.1-1+deb10u1_amd64.deb ... Unpacking libhogweed4:amd64 (3.4.1-1+deb10u1) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5973 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... Selecting previously unselected package libidn2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5979 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... Selecting previously unselected package libffi6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6013 files and directories currently installed.) Preparing to unpack .../libffi6_3.2.1-9_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-9) ... Setting up libffi6:amd64 (3.2.1-9) ... Selecting previously unselected package libp11-kit0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6018 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.15-2+deb10u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.15-2+deb10u1) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... Selecting previously unselected package libtasn1-6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6026 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3) ... Setting up libtasn1-6:amd64 (4.13-3) ... Selecting previously unselected package libgnutls30:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6035 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u8_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u8) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u8) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6063 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-4_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.3-4) ... Setting up libseccomp2:amd64 (2.3.3-4) ... Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6069 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.3.0-6_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-6) ... Setting up gcc-8-base:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6075 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.3.0-6_amd64.deb ... Unpacking libgcc1:amd64 (1:8.3.0-6) over (1:6.3.0-18+deb9u1) ... Setting up libgcc1:amd64 (1:8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6075 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.3.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (8.3.0-6) over (6.3.0-18+deb9u1) ... Setting up libstdc++6:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6075 files and directories currently installed.) Preparing to unpack .../archives/apt_1.8.2.3_amd64.deb ... Unpacking apt (1.8.2.3) over (1.4.10) ... Preparing to unpack .../libapt-pkg5.0_1.8.2.3_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.8.2.3) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.8.2.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6103 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.19.8_amd64.deb ... Unpacking dpkg (1.19.8) over (1.18.25) ... Setting up dpkg (1.19.8) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6101 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-5_amd64.deb ... Unpacking dash (0.5.10.2-5) over (0.5.8-2.4) ... Setting up dash (0.5.10.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6102 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libcomerr2:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../libcom-err2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libcom-err2:amd64 (1.44.5-1+deb10u3) ... Setting up libcom-err2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6105 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fslibs:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libext2fs2:amd64. Preparing to unpack .../libext2fs2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.5-1+deb10u3) ... Setting up libext2fs2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6105 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u2_all.deb ... Unpacking ncurses-base (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up ncurses-base (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libpython3.7-minimal:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6396 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) over (3.5.3-1) ... Selecting previously unselected package fonts-liberation. Preparing to unpack .../01-fonts-liberation_1%3a1.07.4-9_all.deb ... Unpacking fonts-liberation (1:1.07.4-9) ... Selecting previously unselected package fonts-glyphicons-halflings. 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Unpacking libreadline7:amd64 (7.0-5) over (7.0-3) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../39-libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../40-python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Preparing to unpack .../41-libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) over (3.5.3-1) ... Preparing to unpack .../42-libss2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libss2:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.44.5-1+deb10u3) ... Setting up apt (1.8.2.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Setting up e2fslibs:amd64 (1.44.5-1+deb10u3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1+deb10u1) ... Setting up tzdata (2021a-0+deb10u6) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 17 21:46:18 UTC 2022. Universal Time is now: Sat Dec 17 21:46:18 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up sphinx-common (1.8.4-1) ... Setting up util-linux (2.33.1-0.1) ... update-alternatives: warning: alternative /usr/bin/pg (part of link group pager) doesn't exist; removing from list of alternatives Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up fonts-liberation (1:1.07.4-9) ... Setting up sgml-base (1.29) ... Setting up openssl (1.1.1n-0+deb10u3) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up xml-core (0.18+nmu1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up python3 (3.7.3-1) ... Setting up python3-markupsafe (1.1.0-1) ... Setting up python3-tz (2019.1-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-pygments (2.3.1+dfsg-1+deb10u2) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up python3-idna (2.6-1) ... Setting up cython3 (0.29.2-2) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-imagesize (1.0.0-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up python3-screed (1.0-3) ... Setting up python3-babel (2.6.0+dfsg.1-1+deb10u1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1) ... Setting up python3-packaging (19.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-requests (2.21.0-1) ... Processing triggers for mime-support (3.62) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python3-guzzle-sphinx-theme (0.7.11-4) ... Setting up khmer-common (2.1.2+dfsg-6) ... Setting up khmer (2.1.2+dfsg-6) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-yf', 'dist-upgrade'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m37.2s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'show', '--no-all-versions', 'khmer'] 0m37.3s DUMP: Package: khmer Version: 2.1.2+dfsg-6 Installed-Size: 29563 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: khmer-common, python3 (>= 3.7~), python3-screed (>= 1.0), libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:3.4), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), cython3 (>= 0.26.1), python3 (<< 3.8), python3-bz2file, python3:any Description-en: in-memory DNA sequence kmer counting, filtering & graph traversal khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name. Description-md5: fcb7ec9befc5e3aef9f670bd332040fb Multi-Arch: foreign Homepage: http://khmer.readthedocs.org Tag: biology::format:fasta, biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, use::analysing, use::comparing, use::filtering Section: science Priority: optional Filename: pool/main/k/khmer/khmer_2.1.2+dfsg-6_amd64.deb Size: 6644188 MD5sum: bd505438e8bfd95c2b8fa94e847ca38a SHA256: b44bfca653dc7037db0cfb02d92ea0488b4d7a91e43536479b1091f153560550 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'show', '--no-all-versions', 'khmer'] 0m37.3s INFO: apt-cache knows about the following packages: khmer 0m37.3s INFO: Running scripts pre_install 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_database-server'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_database-server'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_exceptions'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_exceptions'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_extras'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_extras'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy'] 0m37.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy', 'khmer'] 0m37.4s DUMP: khmer: Installed: 2.1.2+dfsg-6 Candidate: 2.1.2+dfsg-6 Version table: *** 2.1.2+dfsg-6 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy', 'khmer'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'install', 'khmer'] 0m37.7s DUMP: Reading package lists... Building dependency tree... Reading state information... khmer is already the newest version (2.1.2+dfsg-6). The following packages were automatically installed and are no longer required: dh-python libpython3.5-minimal libpython3.5-stdlib python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'install', 'khmer'] 0m37.7s INFO: Running scripts post_install 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_install_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_install_exceptions'] 0m37.7s INFO: Running scripts post_distupgrade 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_exceptions'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_zz_backports'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_distupgrade_zz_backports'] 0m37.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m38.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m38.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m39.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m39.0s INFO: Running scripts pre_install 0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_database-server'] 0m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_database-server'] 0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_exceptions'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_exceptions'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_extras'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_extras'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy'] 0m39.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy', 'khmer'] 0m39.2s DUMP: khmer: Installed: 2.1.2+dfsg-6 Candidate: 2.1.2+dfsg-6 Version table: *** 2.1.2+dfsg-6 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m39.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-cache', 'policy', 'khmer'] 0m39.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'install', 'khmer=2.1.2+dfsg-6'] 0m39.4s DUMP: Reading package lists... Building dependency tree... Reading state information... khmer is already the newest version (2.1.2+dfsg-6). The following packages were automatically installed and are no longer required: dh-python libpython3.5-minimal libpython3.5-stdlib python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', '-y', 'install', 'khmer=2.1.2+dfsg-6'] 0m39.4s INFO: Running scripts post_install 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_install_exceptions'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_install_exceptions'] 0m39.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m40.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m40.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', '-ac', '--ignore-obsolete'] 0m41.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', '-ac', '--ignore-obsolete'] 0m41.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.6s DUMP: 0.15.6 0m41.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.6s INFO: Running adequate version 0.15.6 now. 0m41.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'khmer'] 0m41.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'khmer'] 0m41.7s INFO: Running scripts pre_remove 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_exceptions'] 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/pre_remove_exceptions'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed cython3 cython3 0.29.2-2 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed dh-python dh-python 3.20190308 install ok installed diffutils diffutils 1:3.7-3 install ok installed docutils-common docutils-common 0.14+dfsg-4 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-9 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed khmer khmer 2.1.2+dfsg-6 install ok installed khmer-common khmer-common 2.1.2+dfsg-6 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.8.4-1 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.5-minimal:amd64 libpython3.5-minimal 3.5.3-1+deb9u1 install ok installed libpython3.5-stdlib:amd64 libpython3.5-stdlib 3.5.3-1+deb9u1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed python-babel-localedata python-babel-localedata 2.6.0+dfsg.1-1+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-alabaster python3-alabaster 0.7.8-1 install ok installed python3-babel python3-babel 2.6.0+dfsg.1-1+deb10u1 install ok installed python3-bz2file python3-bz2file 0.98-2 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-docutils python3-docutils 0.14+dfsg-4 install ok installed python3-guzzle-sphinx-theme python3-guzzle-sphinx-theme 0.7.11-4 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-imagesize python3-imagesize 1.0.0-1 install ok installed python3-jinja2 python3-jinja2 2.10-2 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-markupsafe python3-markupsafe 1.1.0-1 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-packaging python3-packaging 19.0-1 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-pygments python3-pygments 2.3.1+dfsg-1+deb10u2 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-roman python3-roman 2.0.0-3 install ok installed python3-screed python3-screed 1.0-3 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-sphinx python3-sphinx 1.8.4-1 install ok installed python3-tz python3-tz 2019.1-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3.5 python3.5 3.5.3-1+deb9u1 install ok installed python3.5-minimal python3.5-minimal 3.5.3-1+deb9u1 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed sphinx-common sphinx-common 1.8.4-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'remove', 'ca-certificates', 'cython3', 'dh-python', 'docutils-common', 'file', 'fonts-glyphicons-halflings', 'fonts-liberation', 'khmer-common', 'libexpat1:amd64', 'libgomp1:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libmagic-mgc', 'libmagic1:amd64', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'openssl', 'python-babel-localedata', 'python3', 'python3-alabaster', 'python3-babel', 'python3-bz2file', 'python3-certifi', 'python3-chardet', 'python3-distutils', 'python3-docutils', 'python3-guzzle-sphinx-theme', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-roman', 'python3-screed', 'python3-six', 'python3-sphinx', 'python3-tz', 'python3-urllib3', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'tzdata', 'xml-core', 'khmer'] 0m47.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates cython3 dh-python docutils-common file fonts-glyphicons-halflings fonts-liberation khmer khmer-common libexpat1 libgomp1 libjs-bootstrap libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libmpdec2 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline7 libsqlite3-0 libssl1.1 mime-support openssl python-babel-localedata python3 python3-alabaster python3-babel python3-bz2file python3-certifi python3-chardet python3-distutils python3-docutils python3-guzzle-sphinx-theme python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pkg-resources python3-pygments python3-pyparsing python3-requests python3-roman python3-screed python3-six python3-sphinx python3-tz python3-urllib3 python3.5 python3.5-minimal python3.7 python3.7-minimal readline-common sgml-base sphinx-common tzdata xml-core 0 upgraded, 0 newly installed, 64 to remove and 0 not upgraded. After this operation, 154 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12120 files and directories currently installed.) Removing khmer (2.1.2+dfsg-6) ... Removing khmer-common (2.1.2+dfsg-6) ... Removing python3-guzzle-sphinx-theme (0.7.11-4) ... Removing python3-sphinx (1.8.4-1) ... Removing python3-requests (2.21.0-1) ... Removing python3-certifi (2018.8.24-1) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cython3 (0.29.2-2) ... Removing dh-python (3.20190308) ... Removing python3-docutils (0.14+dfsg-4) ... Removing docutils-common (0.14+dfsg-4) ... Removing file (1:5.35-4+deb10u2) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... Removing fonts-liberation (1:1.07.4-9) ... Removing python3.5 (3.5.3-1+deb9u1) ... Removing python3.5-minimal (3.5.3-1+deb9u1) ... Removing python3-distutils (3.7.3-1) ... Removing python3-urllib3 (1.24.1-1) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing sphinx-common (1.8.4-1) ... Removing libjs-sphinxdoc (1.8.4-1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Removing libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Removing openssl (1.1.1n-0+deb10u3) ... Removing python3-babel (2.6.0+dfsg.1-1+deb10u1) ... Removing python-babel-localedata (2.6.0+dfsg.1-1+deb10u1) ... Removing python3-alabaster (0.7.8-1) ... Removing python3-screed (1.0-3) ... Removing python3-bz2file (0.98-2) ... Removing python3-chardet (3.0.4-3) ... Removing python3-idna (2.6-1) ... Removing python3-imagesize (1.0.0-1) ... Removing python3-jinja2 (2.10-2) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-markupsafe (1.1.0-1) ... Removing python3-packaging (19.0-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-pygments (2.3.1+dfsg-1+deb10u2) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-roman (2.0.0-3) ... Removing python3-tz (2019.1-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing tzdata (2021a-0+deb10u6) ... Removing python3-six (1.12.0-1) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing mime-support (3.62) ... Removing python3-minimal (3.7.3-1) ... Removing readline-common (7.0-5) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'remove', 'ca-certificates', 'cython3', 'dh-python', 'docutils-common', 'file', 'fonts-glyphicons-halflings', 'fonts-liberation', 'khmer-common', 'libexpat1:amd64', 'libgomp1:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libmagic-mgc', 'libmagic1:amd64', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'openssl', 'python-babel-localedata', 'python3', 'python3-alabaster', 'python3-babel', 'python3-bz2file', 'python3-certifi', 'python3-chardet', 'python3-distutils', 'python3-docutils', 'python3-guzzle-sphinx-theme', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-roman', 'python3-screed', 'python3-six', 'python3-sphinx', 'python3-tz', 'python3-urllib3', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'tzdata', 'xml-core', 'khmer'] 0m47.3s INFO: Running scripts post_remove 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_remove_exceptions'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_remove_exceptions'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--purge', 'ca-certificates', 'cython3', 'dh-python', 'docutils-common', 'file', 'fonts-glyphicons-halflings', 'fonts-liberation', 'khmer-common', 'libexpat1:amd64', 'libgomp1:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libmagic-mgc', 'libmagic1:amd64', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'openssl', 'python-babel-localedata', 'python3', 'python3-alabaster', 'python3-babel', 'python3-bz2file', 'python3-certifi', 'python3-chardet', 'python3-distutils', 'python3-docutils', 'python3-guzzle-sphinx-theme', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-roman', 'python3-screed', 'python3-six', 'python3-sphinx', 'python3-tz', 'python3-urllib3', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'tzdata', 'xml-core'] 0m47.7s DUMP: (Reading database ... 4643 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cython3 which isn't installed dpkg: warning: ignoring request to remove dh-python which isn't installed Purging configuration files for docutils-common (0.14+dfsg-4) ... dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for khmer-common (2.1.2+dfsg-6) ... dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.35-4+deb10u2) ... dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove libpython3.5-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Purging configuration files for mime-support (3.62) ... Purging configuration files for openssl (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-alabaster which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-bz2file which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed Purging configuration files for python3-guzzle-sphinx-theme (0.7.11-4) ... dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-imagesize which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-screed which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-sphinx which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.5 which isn't installed Purging configuration files for python3.5-minimal (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... Purging configuration files for readline-common (7.0-5) ... Purging configuration files for sgml-base (1.29) ... dpkg: warning: ignoring request to remove sphinx-common which isn't installed Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for xml-core (0.18+nmu1) ... 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--purge', 'ca-certificates', 'cython3', 'dh-python', 'docutils-common', 'file', 'fonts-glyphicons-halflings', 'fonts-liberation', 'khmer-common', 'libexpat1:amd64', 'libgomp1:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libmagic-mgc', 'libmagic1:amd64', 'libmpdec2:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'openssl', 'python-babel-localedata', 'python3', 'python3-alabaster', 'python3-babel', 'python3-bz2file', 'python3-certifi', 'python3-chardet', 'python3-distutils', 'python3-docutils', 'python3-guzzle-sphinx-theme', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-roman', 'python3-screed', 'python3-six', 'python3-sphinx', 'python3-tz', 'python3-urllib3', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'tzdata', 'xml-core'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--purge', 'khmer'] 0m47.7s DUMP: dpkg: warning: ignoring request to remove khmer which isn't installed 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--purge', 'khmer'] 0m47.7s INFO: Running scripts post_purge 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_purge_exceptions'] 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_purge_exceptions'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--purge', '--pending'] 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--purge', '--pending'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--remove', '--pending'] 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg', '--remove', '--pending'] 0m47.7s INFO: Running scripts post_test 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_test_exceptions'] 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'tmp/scripts/post_test_exceptions'] 0m47.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m48.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg-divert', '--list'] 0m48.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'dpkg-divert', '--list'] 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'clean'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j', 'apt-get', 'clean'] 0m48.1s DEBUG: Recording chroot state 0m48.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/shm'] 0m48.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/shm'] 0m48.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/console'] 0m48.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/console'] 0m48.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/ptmx'] 0m48.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/ptmx'] 0m48.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/pts'] 0m48.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/dev/pts'] 0m48.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/proc'] 0m48.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j/proc'] 0m48.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m48.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjs0qu_8j'] 0m48.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpjs0qu_8j 0m48.9s INFO: PASS: Upgrading between Debian distributions. 0m48.9s INFO: PASS: All tests. 0m48.9s INFO: piuparts run ends. ret=0 End: 2022-12-17 21:46:41 GMT