Start: 2023-04-21 16:55:40 GMT [stretch] Package: r-bioc-cummerbund Version: 2.16.0-2 Installed-Size: 8231 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-biocgenerics (>= 0.3.2), r-cran-rsqlite, r-cran-ggplot2, r-cran-reshape2, r-cran-fastcluster, r-bioc-rtracklayer, r-bioc-gviz, r-cran-plyr, r-bioc-s4vectors (>= 0.9.25), r-bioc-biobase Suggests: r-cran-cluster, r-cran-stringr, r-bioc-genomicfeatures, r-bioc-genomicranges, r-cran-rjson Description: tool for analysis of Cufflinks RNA-Seq output Homepage: https://bioconductor.org/packages/cummeRbund/ Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.16.0-2_all.deb Size: 2127148 MD5sum: 64f261bd45ed889a99e1ffdc406e0636 SHA256: d6693482f72d80a1b13bd3be74b6ecc6dd36e84f76ae56f0675befb0726b4fcd [buster] Package: r-bioc-cummerbund Version: 2.24.0-2 Installed-Size: 8929 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 3.5.1-2), r-api-3.5, r-api-bioc-3.8, r-bioc-biocgenerics (>= 0.3.2), r-cran-rsqlite, r-cran-ggplot2, r-cran-reshape2, r-cran-fastcluster, r-bioc-rtracklayer, r-bioc-gviz, r-cran-plyr, r-bioc-s4vectors (>= 0.9.25), r-bioc-biobase Suggests: r-cran-cluster, r-cran-stringr, r-bioc-genomicfeatures, r-bioc-genomicranges, r-cran-rjson Description: tool for analysis of Cufflinks RNA-Seq output Homepage: https://bioconductor.org/packages/cummeRbund/ Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.24.0-2_all.deb Size: 2540440 MD5sum: ef097eb7bfa99e9a7ed301e9ca4b2578 SHA256: 346ba0a201050c6c99db624fd3a21e04c568697e5fa713b9072917335266e1f2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat --apt r-bioc-cummerbund=2.24.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat --apt r-bioc-cummerbund=2.24.0-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpdv4vmmgh 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpdv4vmmgh 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpdv4vmmgh/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'update'] 0m3.1s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s INFO: Running scripts post_setup 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_minimize'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_setup_zz_backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_test_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_test_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_test_root_password'] 0m4.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_test_root_password'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 0m5.0s DUMP: Package: r-bioc-cummerbund Version: 2.16.0-2 Installed-Size: 8231 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-biocgenerics (>= 0.3.2), r-cran-rsqlite, r-cran-ggplot2, r-cran-reshape2, r-cran-fastcluster, r-bioc-rtracklayer, r-bioc-gviz, r-cran-plyr, r-bioc-s4vectors (>= 0.9.25), r-bioc-biobase Suggests: r-cran-cluster, r-cran-stringr, r-bioc-genomicfeatures, r-bioc-genomicranges, r-cran-rjson Description-en: tool for analysis of Cufflinks RNA-Seq output Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations. Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Homepage: https://bioconductor.org/packages/cummeRbund/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.16.0-2_all.deb Size: 2127148 MD5sum: 64f261bd45ed889a99e1ffdc406e0636 SHA256: d6693482f72d80a1b13bd3be74b6ecc6dd36e84f76ae56f0675befb0726b4fcd 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 0m5.0s INFO: apt-cache knows about the following packages: r-bioc-cummerbund 0m5.0s INFO: Running scripts pre_install 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy'] 0m5.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m5.1s DUMP: r-bioc-cummerbund: Installed: (none) Candidate: 2.16.0-2 Version table: 2.16.0-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 0m53.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-mathjax libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.2 libssl1.1 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base openssl r-base-core r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-assertthat r-cran-base64enc r-cran-bitops r-cran-chron r-cran-cluster r-cran-colorspace r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate r-cran-fastcluster r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-munsell r-cran-openssl r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-viridis r-cran-xml r-cran-xtable r-cran-yaml readline-common tzdata ucf unzip x11-common xdg-utils zip Suggested packages: gnutls-bin krb5-doc krb5-user libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-go.db r-cran-runit r-bioc-graph r-cran-foreach r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi r-bioc-shortread r-cran-codetools r-bioc-annotate r-bioc-affy r-cran-rjson r-bioc-deseq2 r-bioc-edger r-bioc-genefilter r-bioc-limma r-bioc-snpstats r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-testthat r-cran-reshape r-cran-hexbin r-cran-fastmatch r-cran-nlme r-cran-xts r-cran-gdata r-cran-caret r-cran-zoo r-cran-rmysql r-cran-mapproj r-cran-maps r-cran-maptools r-cran-mgcv r-cran-multcomp r-cran-quantreg r-cran-testit r-cran-png r-cran-xml2 r-cran-formatr r-cran-rgl r-cran-htmlwidgets r-cran-tikzdevice r-cran-getopt r-cran-abind r-cran-iterators r-cran-inline r-cran-dbitest r-cran-cairo r-cran-rsprng r-cran-rlecuyer readline-doc gvfs-bin Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix libsasl2-modules xml-core r-recommended r-base-dev r-doc-html r-cran-crayon libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-mathjax libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.2 libssl1.1 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base openssl r-base-core r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-assertthat r-cran-base64enc r-cran-bitops r-cran-chron r-cran-cluster r-cran-colorspace r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate r-cran-fastcluster r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-munsell r-cran-openssl r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-viridis r-cran-xml r-cran-xtable r-cran-yaml readline-common tzdata ucf unzip x11-common xdg-utils zip 0 upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 166 MB of archives. After this operation, 355 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-metadata all 11-3 [7188 B] Get:21 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-tablesorter all 11-3 [43.9 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libjs-twitter-bootstrap all 2.0.2+dfsg-10 [98.8 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-1 [31.5 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 fonts-mathjax all 2.7.0-2 [960 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libjs-bootstrap all 3.3.7+dfsg-2+deb9u2 [277 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libjs-es5-shim all 4.5.9-1 [41.3 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libjs-highlight.js all 8.2+ds-5 [165 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-datatables all 1.10.13+dfsg-2 [135 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libjs-json all 0~20160510-1 [24.2 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:100 http://deb.debian.org/debian stretch/main amd64 r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 littler all 0.3.1-1 [11.7 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocgenerics all 0.20.0-1 [483 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 r-bioc-biobase amd64 2.34.0-1 [1989 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 r-bioc-s4vectors amd64 0.12.1-2+b1 [1114 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 r-bioc-iranges amd64 2.8.1-1+b1 [1438 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 r-cran-dbi amd64 0.5-1-1 [332 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 r-cran-digest amd64 0.6.11-1 [112 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 r-cran-memoise all 1.0.0-1 [24.4 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 r-cran-rsqlite amd64 1.1-2-1 [745 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationdbi all 1.36.1-2 [4190 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocinstaller all 1.24.0-1 [59.3 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 r-cran-httpuv amd64 1.3.3-3 [227 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 r-cran-mime amd64 0.5-1 [25.5 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 r-cran-jsonlite amd64 1.2-1 [589 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 r-cran-xtable all 1:1.8-2-1 [694 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 r-cran-htmltools amd64 0.3.5-2 [115 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 r-cran-r6 all 2.2.0-2 [128 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 r-cran-sourcetools amd64 0.1.5-1 [43.0 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 r-cran-shiny all 1.0.0+dfsg-1 [1025 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 r-bioc-interactivedisplaybase all 1.12.0-1 [33.4 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 r-cran-curl amd64 2.3-1 [353 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 r-cran-openssl amd64 0.9.6-1 [552 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 r-cran-httr all 1.2.1-1 [262 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 r-cran-yaml amd64 2.1.14-1 [79.4 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationhub all 2.6.4-1 [388 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 r-cran-lambda.r all 1.1.9-1 [66.7 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.options all 1.0.0-2 [15.4 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.logger all 1.4.3-1 [90.8 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 r-cran-snow all 1:0.4.2-1 [65.0 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocparallel all 1.8.1-1 [633 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 r-cran-xml amd64 3.98-1.5-1 [1652 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 r-cran-rcurl amd64 1.95-4.8-2 [607 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 r-bioc-biomart all 2.30.0-1 [183 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 r-bioc-xvector amd64 0.14.0-1+b1 [338 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 r-bioc-biostrings amd64 2.42.1-1 [13.5 MB] Get:139 http://deb.debian.org/debian stretch/main amd64 r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 r-cran-dichromat all 2.0.0-3 [146 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 r-cran-plyr amd64 1.8.4-1 [727 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 r-cran-colorspace amd64 1.3-2-1 [388 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 r-cran-munsell all 0.4.3-1 [127 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 r-cran-labeling all 0.3-1 [39.9 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 r-cran-scales amd64 0.4.1-1 [200 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 r-cran-chron amd64 2.3-49-1 [104 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 r-cran-cluster amd64 2.0.5-1 [490 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 r-cran-survival amd64 2.40-1-1 [4863 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 r-cran-formula all 1.2-1-1 [162 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 r-cran-rpart amd64 4.1-10-2 [861 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 r-cran-latticeextra amd64 0.6-28-2 [2059 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 r-cran-acepack amd64 1.4.1-1 [52.5 kB] Get:155 http://deb.debian.org/debian stretch/main amd64 r-cran-gtable all 0.2.0-1 [65.1 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 r-cran-stringi amd64 1.1.2-1 [606 kB] Get:158 http://deb.debian.org/debian stretch/main amd64 r-cran-magrittr amd64 1.5-3 [147 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 r-cran-stringr all 1.1.0-1 [117 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 r-cran-reshape2 amd64 1.4.2-1 [87.5 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 r-cran-assertthat all 0.1-1 [43.3 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 r-cran-lazyeval amd64 0.2.0-1 [112 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 r-cran-tibble amd64 1.2-1 [121 kB] Get:164 http://deb.debian.org/debian stretch/main amd64 r-cran-ggplot2 all 2.2.1-2 [2658 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 r-cran-gridextra all 2.2.1-1 [451 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 r-cran-data.table amd64 1.10.0-1 [1070 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 r-cran-evaluate all 0.10-1 [51.5 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 r-cran-highr all 0.6-1 [30.1 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libjs-mathjax all 2.7.0-2 [5603 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 r-cran-markdown amd64 0.7.7-1 [95.2 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 r-cran-knitr amd64 1.15.1-1 [784 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 r-cran-viridis all 0.3.4-1 [1723 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 r-cran-htmltable all 1.7-2 [153 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 r-cran-base64enc amd64 0.1-3-1 [23.4 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 r-cran-hmisc amd64 4.0-2-1 [1745 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomeinfodb all 1.10.3-1 [14.7 MB] Get:177 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicranges amd64 1.26.2-1+b1 [1474 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 r-bioc-summarizedexperiment all 1.4.0-2 [1354 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 r-bioc-rsamtools amd64 1.26.1-2+b1 [3241 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicalignments amd64 1.10.0-1+b1 [1487 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 r-bioc-rtracklayer amd64 1.34.1-1 [1831 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicfeatures all 1.26.2-1 [1054 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 r-bioc-bsgenome all 1.42.0-2 [6483 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 r-bioc-variantannotation amd64 1.20.2-1+b1 [2233 kB] Get:185 http://deb.debian.org/debian stretch/main amd64 r-bioc-ensembldb all 1.6.2-1 [1254 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 r-bioc-biovizbase amd64 1.22.0-2 [2537 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 r-cran-fastcluster amd64 1.1.22-1 [179 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 r-cran-matrixstats amd64 0.51.0-1 [567 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 r-bioc-gviz all 1.18.1-1 [4296 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 r-bioc-cummerbund all 2.16.0-2 [2127 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 166 MB in 15s (10.6 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../001-libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../002-libfreetype6_2.6.3-3.2+deb9u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../004-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../005-fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../006-libfontconfig1_2.11.0-6.7+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7+b1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../007-fontconfig_2.11.0-6.7+b1_amd64.deb ... Unpacking fontconfig (2.11.0-6.7+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../008-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../009-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../010-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../011-libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../012-libx11-data_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../013-libx11-6_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../014-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../015-lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) ... Selecting previously unselected package x11-common. Preparing to unpack .../016-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../017-libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../018-libjs-jquery_3.1.1-2+deb9u1_all.deb ... Unpacking libjs-jquery (3.1.1-2+deb9u1) ... Selecting previously unselected package libjs-jquery-metadata. Preparing to unpack .../019-libjs-jquery-metadata_11-3_all.deb ... Unpacking libjs-jquery-metadata (11-3) ... Selecting previously unselected package libjs-jquery-tablesorter. Preparing to unpack .../020-libjs-jquery-tablesorter_11-3_all.deb ... Unpacking libjs-jquery-tablesorter (11-3) ... Selecting previously unselected package libjs-twitter-bootstrap. Preparing to unpack .../021-libjs-twitter-bootstrap_2.0.2+dfsg-10_all.deb ... Unpacking libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Selecting previously unselected package libjs-twitter-bootstrap-datepicker. Preparing to unpack .../022-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-1_all.deb ... Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../023-tzdata_2020a-0+deb9u1_all.deb ... Unpacking tzdata (2020a-0+deb9u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../024-readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../025-libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../026-libssl1.0.2_1.0.2u-1~deb9u1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../027-libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../028-libgmp10_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../029-libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../030-libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../031-libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../032-libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../033-libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../034-libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../035-libgnutls30_3.5.8-5+deb9u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../036-libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../037-libkrb5support0_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../038-libk5crypto3_1.15-1+deb9u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../039-libkrb5-3_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../040-libgssapi-krb5-2_1.15-1+deb9u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../041-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../042-libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../043-libldap-common_2.4.44+dfsg-5+deb9u4_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../044-libldap-2.4-2_2.4.44+dfsg-5+deb9u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../045-libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../046-libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Selecting previously unselected package openssl. Preparing to unpack .../047-openssl_1.1.0l-1~deb9u1_amd64.deb ... Unpacking openssl (1.1.0l-1~deb9u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../048-ca-certificates_20200601~deb9u1_all.deb ... Unpacking ca-certificates (20200601~deb9u1) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../049-fonts-font-awesome_4.7.0~dfsg-1_all.deb ... Unpacking fonts-font-awesome (4.7.0~dfsg-1) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../050-fonts-mathjax_2.7.0-2_all.deb ... Unpacking fonts-mathjax (2.7.0-2) ... Selecting previously unselected package libblas-common. Preparing to unpack .../051-libblas-common_3.7.0-2_amd64.deb ... Unpacking libblas-common (3.7.0-2) ... Selecting previously unselected package libquadmath0:amd64. 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Selecting previously unselected package r-bioc-summarizedexperiment. Preparing to unpack .../177-r-bioc-summarizedexperiment_1.4.0-2_all.deb ... Unpacking r-bioc-summarizedexperiment (1.4.0-2) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../178-r-bioc-rsamtools_1.26.1-2+b1_amd64.deb ... Unpacking r-bioc-rsamtools (1.26.1-2+b1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../179-r-bioc-genomicalignments_1.10.0-1+b1_amd64.deb ... Unpacking r-bioc-genomicalignments (1.10.0-1+b1) ... Selecting previously unselected package r-bioc-rtracklayer. Preparing to unpack .../180-r-bioc-rtracklayer_1.34.1-1_amd64.deb ... Unpacking r-bioc-rtracklayer (1.34.1-1) ... Selecting previously unselected package r-bioc-genomicfeatures. Preparing to unpack .../181-r-bioc-genomicfeatures_1.26.2-1_all.deb ... Unpacking r-bioc-genomicfeatures (1.26.2-1) ... Selecting previously unselected package r-bioc-bsgenome. Preparing to unpack .../182-r-bioc-bsgenome_1.42.0-2_all.deb ... Unpacking r-bioc-bsgenome (1.42.0-2) ... Selecting previously unselected package r-bioc-variantannotation. Preparing to unpack .../183-r-bioc-variantannotation_1.20.2-1+b1_amd64.deb ... Unpacking r-bioc-variantannotation (1.20.2-1+b1) ... Selecting previously unselected package r-bioc-ensembldb. Preparing to unpack .../184-r-bioc-ensembldb_1.6.2-1_all.deb ... Unpacking r-bioc-ensembldb (1.6.2-1) ... Selecting previously unselected package r-bioc-biovizbase. Preparing to unpack .../185-r-bioc-biovizbase_1.22.0-2_amd64.deb ... Unpacking r-bioc-biovizbase (1.22.0-2) ... Selecting previously unselected package r-cran-fastcluster. Preparing to unpack .../186-r-cran-fastcluster_1.1.22-1_amd64.deb ... Unpacking r-cran-fastcluster (1.1.22-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../187-r-cran-matrixstats_0.51.0-1_amd64.deb ... Unpacking r-cran-matrixstats (0.51.0-1) ... Selecting previously unselected package r-bioc-gviz. Preparing to unpack .../188-r-bioc-gviz_1.18.1-1_all.deb ... Unpacking r-bioc-gviz (1.18.1-1) ... Selecting previously unselected package r-bioc-cummerbund. Preparing to unpack .../189-r-bioc-cummerbund_2.16.0-2_all.deb ... Unpacking r-bioc-cummerbund (2.16.0-2) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up fonts-mathjax (2.7.0-2) ... Setting up r-cran-fastcluster (1.1.22-1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libjs-highlight.js (8.2+ds-5) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up libjs-mathjax (2.7.0-2) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Apr 21 16:56:24 UTC 2023. Universal Time is now: Fri Apr 21 16:56:24 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libjs-es5-shim (4.5.9-1) ... Setting up ucf (3.0036) ... Setting up fonts-font-awesome (4.7.0~dfsg-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up zip (3.0-11+b1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up lsb-base (9.20161125) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up libjs-json (0~20160510-1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libjs-jquery-datatables (1.10.13+dfsg-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libjs-jquery-metadata (11-3) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libjs-jquery-tablesorter (11-3) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-1) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.1-1) ... Setting up littler (0.3.1-1) ... Setting up r-cran-gtable (0.2.0-1) ... Setting up r-cran-curl (2.3-1) ... Setting up r-cran-acepack (1.4.1-1) ... Setting up r-bioc-biocgenerics (0.20.0-1) ... Setting up r-cran-assertthat (0.1-1) ... Setting up r-bioc-biobase (2.34.0-1) ... Setting up r-cran-jsonlite (1.2-1) ... Setting up r-cran-rcolorbrewer (1.1-2-1) ... Setting up r-cran-sourcetools (0.1.5-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-bioc-biocinstaller (1.24.0-1) ... Setting up r-cran-dbi (0.5-1-1) ... Setting up r-cran-gridextra (2.2.1-1) ... Setting up r-cran-stringi (1.1.2-1) ... Setting up r-cran-pkgkitten (0.1.4-1) ... Setting up r-cran-futile.options (1.0.0-2) ... Setting up r-cran-rcpp (0.12.9-1) ... Setting up r-cran-labeling (0.3-1) ... Setting up r-cran-r6 (2.2.0-2) ... Setting up r-cran-colorspace (1.3-2-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-plyr (1.8.4-1) ... Setting up r-cran-rcurl (1.95-4.8-2) ... Setting up r-cran-mime (0.5-1) ... Setting up r-cran-yaml (2.1.14-1) ... Setting up r-cran-digest (0.6.11-1) ... Setting up r-cran-xtable (1:1.8-2-1) ... Setting up r-cran-magrittr (1.5-3) ... Setting up r-cran-cluster (2.0.5-1) ... Setting up r-cran-data.table (1.10.0-1) ... Setting up r-cran-dichromat (2.0.0-3) ... Setting up r-cran-lambda.r (1.1.9-1) ... Setting up r-cran-matrixstats (0.51.0-1) ... Setting up r-cran-snow (1:0.4.2-1) ... Setting up r-cran-memoise (1.0.0-1) ... Setting up r-bioc-s4vectors (0.12.1-2+b1) ... Setting up r-cran-xml (3.98-1.5-1) ... Setting up r-cran-httpuv (1.3.3-3) ... Setting up r-cran-openssl (0.9.6-1) ... Setting up r-cran-highr (0.6-1) ... Setting up r-cran-chron (2.3-49-1) ... Setting up r-cran-formula (1.2-1-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-base64enc (0.1-3-1) ... Setting up r-cran-lazyeval (0.2.0-1) ... Setting up r-cran-latticeextra (0.6-28-2) ... Setting up r-cran-stringr (1.1.0-1) ... Setting up r-cran-htmltools (0.3.5-2) ... Setting up r-cran-markdown (0.7.7-1) ... Setting up r-cran-evaluate (0.10-1) ... Setting up r-cran-munsell (0.4.3-1) ... Setting up r-cran-shiny (1.0.0+dfsg-1) ... Setting up r-cran-futile.logger (1.4.3-1) ... Setting up r-cran-reshape2 (1.4.2-1) ... Setting up r-cran-rsqlite (1.1-2-1) ... Setting up r-cran-httr (1.2.1-1) ... Setting up r-bioc-iranges (2.8.1-1+b1) ... Setting up r-cran-scales (0.4.1-1) ... Setting up r-cran-tibble (1.2-1) ... Setting up r-bioc-biocparallel (1.8.1-1) ... Setting up r-cran-matrix (1.2-7.1-1) ... Setting up r-bioc-genomeinfodb (1.10.3-1) ... Setting up r-cran-knitr (1.15.1-1) ... Setting up r-bioc-xvector (0.14.0-1+b1) ... Setting up r-cran-viridis (0.3.4-1) ... Setting up r-bioc-interactivedisplaybase (1.12.0-1) ... Setting up r-bioc-biostrings (2.42.1-1) ... Setting up r-bioc-annotationdbi (1.36.1-2) ... Setting up r-cran-ggplot2 (2.2.1-2) ... Setting up r-cran-survival (2.40-1-1) ... Setting up r-bioc-genomicranges (1.26.2-1+b1) ... Setting up r-cran-htmltable (1.7-2) ... Setting up r-bioc-summarizedexperiment (1.4.0-2) ... Setting up r-bioc-biomart (2.30.0-1) ... Setting up r-cran-rpart (4.1-10-2) ... Setting up r-bioc-annotationhub (2.6.4-1) ... Setting up r-bioc-rsamtools (1.26.1-2+b1) ... Setting up r-bioc-genomicalignments (1.10.0-1+b1) ... Setting up r-cran-hmisc (4.0-2-1) ... Setting up r-bioc-rtracklayer (1.34.1-1) ... Setting up r-bioc-genomicfeatures (1.26.2-1) ... Setting up r-bioc-bsgenome (1.42.0-2) ... Setting up r-bioc-ensembldb (1.6.2-1) ... Setting up r-bioc-variantannotation (1.20.2-1+b1) ... Setting up r-bioc-biovizbase (1.22.0-2) ... Setting up r-bioc-gviz (1.18.1-1) ... Setting up r-bioc-cummerbund (2.16.0-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 0m53.1s INFO: Running scripts post_install 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_install_exceptions'] 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_install_exceptions'] 0m53.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 0m54.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 0m54.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpdv4vmmgh to buster 0m54.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m54.1s INFO: Running scripts pre_distupgrade 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m54.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m54.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'update'] 0m58.2s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 3s (4366 kB/s) Reading package lists... 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'update'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'upgrade'] 1m23.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages have been kept back: apt bash dash dpkg e2fslibs e2fsprogs libapt-pkg5.0 libblas3 libcomerr2 libgcc1 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libjs-bootstrap libk5crypto3 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libncursesw5 libpango-1.0-0 libpangoft2-1.0-0 libpsl5 libquadmath0 libreadline7 libss2 libstdc++6 libtiff5 libtinfo5 libxml2 login mount ncurses-base ncurses-bin r-base-core r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-assertthat r-cran-base64enc r-cran-bitops r-cran-chron r-cran-cluster r-cran-colorspace r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate r-cran-fastcluster r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-munsell r-cran-openssl r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-viridis r-cran-xml r-cran-xtable r-cran-yaml util-linux The following packages will be upgraded: adduser base-files base-passwd bsdutils ca-certificates coreutils debconf debian-archive-keyring debianutils diffutils findutils fontconfig fontconfig-config fonts-font-awesome fonts-mathjax gpgv grep gzip hostname init-system-helpers libacl1 libattr1 libaudit-common libaudit1 libblkid1 libbsd0 libbz2-1.0 libc-bin libc6 libcairo2 libcap-ng0 libdatrie1 libdb5.3 libdebconfclient0 libexpat1 libfdisk1 libffi6 libfontconfig1 libfreetype6 libgcrypt20 libglib2.0-0 libgmp10 libgpg-error0 libgraphite2-3 libharfbuzz0b libhogweed4 libidn11 libjpeg62-turbo libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-twitter-bootstrap-datepicker libkeyutils1 libldap-common liblz4-1 liblzma5 libmount1 libnettle6 libnghttp2-14 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpangocairo-1.0-0 libpaper-utils libpaper1 libpcre3 libpixman-1-0 libpng16-16 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsm6 libsmartcols1 libssh2-1 libssl1.1 libsystemd0 libtasn1-6 libtcl8.6 libthai-data libthai0 libtk8.6 libudev1 libuuid1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxft2 libxss1 libxt6 littler lsb-base multiarch-support openssl passwd perl-base readline-common sed sensible-utils sysvinit-utils tar tzdata ucf unzip xdg-utils zlib1g 120 upgraded, 0 newly installed, 0 to remove and 126 not upgraded. Need to get 42.3 MB of archives. After this operation, 13.0 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:5 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:6 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:7 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:8 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:9 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:10 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:11 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:12 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:13 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:14 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:16 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:17 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:18 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:19 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:36 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:37 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:38 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:39 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:40 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:41 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:48 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:49 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:53 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:54 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:55 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:57 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:58 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:63 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:64 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:65 http://deb.debian.org/debian buster/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB] Get:66 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libjs-es5-shim all 4.5.12-1 [42.6 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libjs-highlight.js all 9.12.0+dfsg1-4+deb10u1 [300 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libjs-jquery-metadata all 12-1.1 [7420 B] Get:91 http://deb.debian.org/debian buster/main amd64 libjs-jquery-tablesorter all 1:2.31.1+dfsg1-1 [176 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libjs-json all 0~20180723-2 [29.3 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [32.0 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:103 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:116 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get:117 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:118 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:119 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:120 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 0s (63.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21047 files and directories currently installed.) Preparing to unpack .../base-files_10.3+deb10u13_amd64.deb ... Unpacking base-files (10.3+deb10u13) over (9.9+deb9u13) ... Setting up base-files (10.3+deb10u13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21054 files and directories currently installed.) Preparing to unpack .../libpam0g_1.3.1-5_amd64.deb ... Unpacking libpam0g:amd64 (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam0g:amd64 (1.3.1-5) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21054 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (2.8-1+b1) over (2.6-3+b3) ... Setting up libselinux1:amd64 (2.8-1+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21053 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam-modules:amd64 (1.3.1-5) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/limits.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21035 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.4-5+deb10u1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.4-5+deb10u1) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.8.4-5+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21035 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u8_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21035 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-5_all.deb ... Unpacking libpam-runtime (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam-runtime (1.3.1-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21095 files and directories currently installed.) Preparing to unpack .../libsepol1_2.8-1_amd64.deb ... Unpacking libsepol1:amd64 (2.8-1) over (2.6-2) ... Setting up libsepol1:amd64 (2.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21094 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.6-2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21093 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_amd64.deb ... Unpacking libsemanage1:amd64 (2.8-2) over (2.6-2) ... Setting up libsemanage1:amd64 (2.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21092 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u1) over (1.0.6-8.1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21092 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.5-1.1_amd64.deb ... Unpacking passwd (1:4.5-1.1) over (1:4.4-4.1) ... Setting up passwd (1:4.5-1.1) ... (Reading database ... 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Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up fonts-mathjax (2.7.4+dfsg-1) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u4) ... Setting up libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libjs-mathjax (2.7.4+dfsg-1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u7) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up tzdata (2021a-0+deb10u6) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Apr 21 16:56:54 UTC 2023. Universal Time is now: Fri Apr 21 16:56:54 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up unzip (6.0-23+deb10u2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up littler (0.3.6-1) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libjs-es5-shim (4.5.12-1) ... Setting up ucf (3.0038+nmu1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libtasn1-6:amd64 (4.13-3) ... Setting up lsb-base (10.2019051400) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up libjs-json (0~20180723-2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up libjs-jquery-datatables (1.10.19+dfsg-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libffi6:amd64 (3.2.1-9) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up libthai-data (0.1.28-2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libjs-jquery-metadata (12-1.1) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libpaper1:amd64 (1.1.28) ... Setting up libjs-jquery-tablesorter (1:2.31.1+dfsg1-1) ... Setting up libpaper-utils (1.1.28) ... Setting up fontconfig-config (2.13.1-2) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'upgrade'] 1m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-yf', 'dist-upgrade'] 2m16.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libblas-common libgfortran3 libicu57 libidn11 libjs-jquery-metadata libjs-jquery-tablesorter libjs-twitter-bootstrap libssl1.0.2 libunistring0 r-bioc-biocinstaller Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libcurl3 The following NEW packages will be installed: fdisk fonts-glyphicons-halflings gcc-8-base libatomic1 libbrotli1 libc-ares2 libc-dev-bin libc6-dev libcom-err2 libcurl4 libext2fs2 libfribidi0 libgfortran5 libicu63 libjs-d3 libjs-jquery-selectize.js libjs-microplugin.js libjs-sifter.js libncursesw6 libnode64 libseccomp2 libtinfo6 libunistring2 libuv1 libwebp6 libzstd1 linux-libc-dev node-highlight.js node-normalize.css nodejs r-bioc-annotationfilter r-bioc-delayedarray r-bioc-genomeinfodbdata r-bioc-protgenerics r-bioc-zlibbioc r-cran-askpass r-cran-backports r-cran-bindr r-cran-bindrcpp r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-blob r-cran-checkmate r-cran-cli r-cran-crayon r-cran-dplyr r-cran-fansi r-cran-foreign r-cran-formatr r-cran-glue r-cran-hms r-cran-htmlwidgets r-cran-later r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-rlang r-cran-rstudioapi r-cran-sys r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-viridislite r-cran-withr r-cran-xfun zlib1g-dev The following packages will be upgraded: apt bash dash dpkg e2fslibs e2fsprogs libapt-pkg5.0 libblas3 libcomerr2 libgcc1 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libjs-bootstrap libk5crypto3 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libncursesw5 libpango-1.0-0 libpangoft2-1.0-0 libpsl5 libquadmath0 libreadline7 libss2 libstdc++6 libtiff5 libtinfo5 libxml2 login mount ncurses-base ncurses-bin r-base-core r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-assertthat r-cran-base64enc r-cran-bitops r-cran-chron r-cran-cluster r-cran-colorspace r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate r-cran-fastcluster r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-munsell r-cran-openssl r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-viridis r-cran-xml r-cran-xtable r-cran-yaml util-linux 126 upgraded, 73 newly installed, 1 to remove and 0 not upgraded. Need to get 210 MB of archives. After this operation, 183 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:8 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:12 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:13 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:14 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:18 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:19 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:21 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:22 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:23 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:24 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:25 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:28 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:29 http://deb.debian.org/debian buster/main amd64 r-bioc-biocgenerics all 0.28.0-2 [644 kB] Get:30 http://deb.debian.org/debian buster/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get:31 http://deb.debian.org/debian buster/main amd64 r-cran-colorspace amd64 1.4-0+dfsg-1 [1580 kB] Get:32 http://deb.debian.org/debian buster/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get:33 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get:34 http://deb.debian.org/debian buster/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:40 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:41 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get:42 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:43 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get:44 http://deb.debian.org/debian buster/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get:45 http://deb.debian.org/debian buster/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get:46 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get:47 http://deb.debian.org/debian buster/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get:48 http://deb.debian.org/debian buster/main amd64 r-cran-survival amd64 2.43-3-1 [4637 kB] Get:49 http://deb.debian.org/debian buster/main amd64 r-cran-formula all 1.2-3-2 [178 kB] Get:50 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get:51 http://deb.debian.org/debian buster/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get:52 http://deb.debian.org/debian buster/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get:53 http://deb.debian.org/debian buster/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get:54 http://deb.debian.org/debian buster/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get:55 http://deb.debian.org/debian buster/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get:56 http://deb.debian.org/debian buster/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get:57 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get:58 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:59 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get:60 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get:61 http://deb.debian.org/debian buster/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get:62 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:63 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get:64 http://deb.debian.org/debian buster/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get:65 http://deb.debian.org/debian buster/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get:66 http://deb.debian.org/debian buster/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get:67 http://deb.debian.org/debian buster/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get:68 http://deb.debian.org/debian buster/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get:69 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get:70 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get:71 http://deb.debian.org/debian buster/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get:72 http://deb.debian.org/debian buster/main amd64 r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get:73 http://deb.debian.org/debian buster/main amd64 r-cran-latticeextra amd64 0.6-28-2+b2 [2182 kB] Get:74 http://deb.debian.org/debian buster/main amd64 r-cran-cluster amd64 2.0.7-1-1+b3 [531 kB] Get:75 http://deb.debian.org/debian buster/main amd64 r-cran-rpart amd64 4.1-13-1+b1 [890 kB] Get:76 http://deb.debian.org/debian buster/main amd64 r-cran-nnet amd64 7.3-12-2+b2 [111 kB] Get:77 http://deb.debian.org/debian buster/main amd64 r-cran-acepack amd64 1.4.1-2+b4 [59.8 kB] Get:78 http://deb.debian.org/debian buster/main amd64 r-cran-foreign amd64 0.8.71-1 [245 kB] Get:79 http://deb.debian.org/debian buster/main amd64 r-cran-gridextra all 2.3-2 [1023 kB] Get:80 http://deb.debian.org/debian buster/main amd64 r-cran-data.table amd64 1.12.0+dfsg-1 [1359 kB] Get:81 http://deb.debian.org/debian buster/main amd64 r-cran-evaluate all 0.13-1 [78.5 kB] Get:82 http://deb.debian.org/debian buster/main amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB] Get:83 http://deb.debian.org/debian buster/main amd64 r-cran-mime amd64 0.6-1 [35.1 kB] Get:84 http://deb.debian.org/debian buster/main amd64 r-cran-markdown amd64 0.9+dfsg-1 [126 kB] Get:85 http://deb.debian.org/debian buster/main amd64 r-cran-yaml amd64 2.2.0-1 [101 kB] Get:86 http://deb.debian.org/debian buster/main amd64 r-cran-xfun all 0.4-1 [145 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:88 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get:92 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get:93 http://deb.debian.org/debian buster/main amd64 node-highlight.js all 9.12.0+dfsg1-4+deb10u1 [237 kB] Get:94 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:96 http://deb.debian.org/debian buster/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:97 http://deb.debian.org/debian buster/main amd64 r-cran-knitr all 1.21+dfsg-2 [855 kB] Get:98 http://deb.debian.org/debian buster/main amd64 r-cran-backports amd64 1.1.3-1 [55.6 kB] Get:99 http://deb.debian.org/debian buster/main amd64 r-cran-checkmate amd64 1.9.1-1 [595 kB] Get:100 http://deb.debian.org/debian buster/main amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB] Get:101 http://deb.debian.org/debian buster/main amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get:102 http://deb.debian.org/debian buster/main amd64 r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB] Get:103 http://deb.debian.org/debian buster/main amd64 r-cran-rstudioapi all 0.9.0-1 [168 kB] Get:104 http://deb.debian.org/debian buster/main amd64 r-cran-bindr all 0.1.1-2 [18.1 kB] Get:105 http://deb.debian.org/debian buster/main amd64 r-cran-bindrcpp amd64 0.2.2-2 [71.4 kB] Get:106 http://deb.debian.org/debian buster/main amd64 r-cran-purrr amd64 0.3.0-1 [384 kB] Get:107 http://deb.debian.org/debian buster/main amd64 r-cran-tidyselect amd64 0.2.5-1 [117 kB] Get:108 http://deb.debian.org/debian buster/main amd64 r-cran-dplyr amd64 0.7.8-1 [1693 kB] Get:109 http://deb.debian.org/debian buster/main amd64 r-cran-tidyr amd64 0.8.2-1 [421 kB] Get:110 http://deb.debian.org/debian buster/main amd64 r-cran-htmltable all 1.13.1-1 [303 kB] Get:111 http://deb.debian.org/debian buster/main amd64 r-cran-viridis all 0.5.1-2 [1846 kB] Get:112 http://deb.debian.org/debian buster/main amd64 r-cran-base64enc amd64 0.1-3-2 [27.7 kB] Get:113 http://deb.debian.org/debian buster/main amd64 r-cran-chron amd64 2.3-53-1 [193 kB] Get:114 http://deb.debian.org/debian buster/main amd64 r-cran-hmisc amd64 4.2-0-1 [3035 kB] Get:115 http://deb.debian.org/debian buster/main amd64 r-cran-dichromat all 1:2.0-0-2 [148 kB] Get:116 http://deb.debian.org/debian buster/main amd64 r-bioc-iranges amd64 2.16.0-1 [2130 kB] Get:117 http://deb.debian.org/debian buster/main amd64 r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB] Get:118 http://deb.debian.org/debian buster/main amd64 r-bioc-genomeinfodb all 1.18.1-1 [3692 kB] Get:119 http://deb.debian.org/debian buster/main amd64 r-bioc-xvector amd64 0.22.0-1 [603 kB] Get:120 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicranges amd64 1.34.0+dfsg-1 [1769 kB] Get:121 http://deb.debian.org/debian buster/main amd64 r-bioc-biobase amd64 2.42.0-1 [2216 kB] Get:122 http://deb.debian.org/debian buster/main amd64 r-cran-matrixstats amd64 0.54.0-1 [618 kB] Get:123 http://deb.debian.org/debian buster/main amd64 r-cran-formatr all 1.5-3 [149 kB] Get:124 http://deb.debian.org/debian buster/main amd64 r-cran-lambda.r all 1.2.3-2 [117 kB] Get:125 http://deb.debian.org/debian buster/main amd64 r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:126 http://deb.debian.org/debian buster/main amd64 r-cran-futile.logger all 1.4.3-3 [102 kB] Get:127 http://deb.debian.org/debian buster/main amd64 r-cran-snow all 1:0.4.3-1 [108 kB] Get:128 http://deb.debian.org/debian buster/main amd64 r-bioc-biocparallel amd64 1.16.6-1 [1063 kB] Get:129 http://deb.debian.org/debian buster/main amd64 r-bioc-delayedarray amd64 0.8.0+dfsg-2 [1286 kB] Get:130 http://deb.debian.org/debian buster/main amd64 r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1886 kB] Get:131 http://deb.debian.org/debian buster/main amd64 r-bioc-biostrings amd64 2.50.2-1 [14.1 MB] Get:132 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:133 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:135 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u1 [210 kB] Get:136 http://deb.debian.org/debian buster/main amd64 r-bioc-zlibbioc all 1.28.0+dfsg-1 [8540 B] Get:137 http://deb.debian.org/debian buster/main amd64 r-cran-bitops amd64 1.0-6-4 [24.3 kB] Get:138 http://deb.debian.org/debian buster/main amd64 r-bioc-rsamtools amd64 1.34.1-1 [3531 kB] Get:139 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicalignments amd64 1.18.1-1 [2102 kB] Get:140 http://deb.debian.org/debian buster/main amd64 r-cran-dbi all 1.0.0-2 [789 kB] Get:141 http://deb.debian.org/debian buster/main amd64 r-cran-bit amd64 1.1-14-1+b1 [221 kB] Get:142 http://deb.debian.org/debian buster/main amd64 r-cran-bit64 amd64 0.9-7-3 [438 kB] Get:143 http://deb.debian.org/debian buster/main amd64 r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get:144 http://deb.debian.org/debian buster/main amd64 r-cran-blob all 1.1.1-2 [25.0 kB] Get:145 http://deb.debian.org/debian buster/main amd64 r-cran-memoise all 1.1.0-2 [38.6 kB] Get:146 http://deb.debian.org/debian buster/main amd64 r-cran-rsqlite amd64 2.1.1-2+b1 [858 kB] Get:147 http://deb.debian.org/debian buster/main amd64 r-bioc-annotationdbi all 1.44.0-1 [4629 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:149 http://deb.debian.org/debian buster/main amd64 r-cran-xml amd64 3.98-1.17-1 [1947 kB] Get:150 http://deb.debian.org/debian buster/main amd64 r-bioc-rtracklayer amd64 1.42.1-2 [2440 kB] Get:151 http://deb.debian.org/debian buster/main amd64 r-bioc-bsgenome all 1.50.0-1 [6995 kB] Get:152 http://deb.debian.org/debian buster/main amd64 r-cran-hms all 0.4.2-2 [59.1 kB] Get:153 http://deb.debian.org/debian buster/main amd64 r-cran-progress all 1.2.0-1 [80.3 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:155 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:159 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:160 http://deb.debian.org/debian buster/main amd64 r-cran-rcurl amd64 1.95-4.11-1 [715 kB] Get:161 http://deb.debian.org/debian buster/main amd64 r-bioc-biovizbase amd64 1.30.1-1 [2776 kB] Get:162 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicfeatures all 1.34.3+dfsg-1 [1559 kB] Get:163 http://deb.debian.org/debian buster/main amd64 r-cran-httr all 1.4.0-3 [464 kB] Get:164 http://deb.debian.org/debian buster/main amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get:165 http://deb.debian.org/debian buster/main amd64 r-bioc-cummerbund all 2.24.0-2 [2540 kB] Get:166 http://deb.debian.org/debian buster/main amd64 r-bioc-ensembldb all 2.6.5+dfsg-1 [1448 kB] Get:167 http://deb.debian.org/debian buster/main amd64 r-bioc-annotationhub all 2.14.3+dfsg-1 [347 kB] Get:168 http://deb.debian.org/debian buster/main amd64 r-cran-shiny all 1.2.0+dfsg-1 [3013 kB] Get:169 http://deb.debian.org/debian buster/main amd64 r-bioc-biocinstaller all 1.32.1-1 [88.1 kB] Get:170 http://deb.debian.org/debian buster/main amd64 r-cran-sourcetools amd64 0.1.7-2 [45.2 kB] Get:171 http://deb.debian.org/debian buster/main amd64 r-bioc-interactivedisplaybase all 1.20.0+dfsg-1 [36.0 kB] Get:172 http://deb.debian.org/debian buster/main amd64 r-cran-curl amd64 3.3+dfsg-1 [128 kB] Get:173 http://deb.debian.org/debian buster/main amd64 r-bioc-biomart all 2.38.0+dfsg-1 [261 kB] Get:174 http://deb.debian.org/debian buster/main amd64 r-bioc-gviz all 1.26.4-1 [5012 kB] Get:175 http://deb.debian.org/debian buster/main amd64 r-bioc-variantannotation amd64 1.28.10-1 [2995 kB] Get:176 http://deb.debian.org/debian buster/main amd64 r-cran-openssl amd64 1.2.2+dfsg-1 [347 kB] Get:177 http://deb.debian.org/debian buster/main amd64 r-cran-httpuv amd64 1.4.5.1+dfsg-1 [292 kB] Get:178 http://deb.debian.org/debian buster/main amd64 r-bioc-s4vectors amd64 0.20.1-2 [1815 kB] Get:179 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:180 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:181 http://deb.debian.org/debian buster/main amd64 r-cran-sys amd64 2.1-1 [58.7 kB] Get:182 http://deb.debian.org/debian buster/main amd64 r-cran-askpass amd64 1.1-1 [21.9 kB] Get:183 http://deb.debian.org/debian buster/main amd64 r-bioc-annotationfilter all 1.6.0+dfsg-1 [192 kB] Get:184 http://deb.debian.org/debian buster/main amd64 r-bioc-protgenerics all 1.14.0-1 [30.6 kB] Get:185 http://deb.debian.org/debian buster/main amd64 r-cran-fastcluster amd64 1.1.25-2 [185 kB] Get:186 http://deb.debian.org/debian buster/main amd64 r-cran-biocmanager all 1.30.4+dfsg-1 [77.1 kB] Get:187 http://deb.debian.org/debian buster/main amd64 r-cran-later amd64 0.7.5+dfsg-2 [71.1 kB] Get:188 http://deb.debian.org/debian buster/main amd64 r-cran-promises amd64 1.0.1-2 [161 kB] Get:189 http://deb.debian.org/debian buster/main amd64 libjs-sifter.js all 0.5.3+dfsg-1 [11.9 kB] Get:190 http://deb.debian.org/debian buster/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1 [3430 B] Get:191 http://deb.debian.org/debian buster/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1 [51.9 kB] Get:192 http://deb.debian.org/debian buster/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:193 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:195 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:197 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:198 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 210 MB in 21s (9723 kB/s) Selecting previously unselected package libtinfo6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21440 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21450 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-4_amd64.deb ... Unpacking bash (5.0-4) over (4.4-5) ... Setting up bash (5.0-4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode Selecting previously unselected package libzstd1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21451 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3+deb10u2_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21457 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21463 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) over (0.16-1+deb9u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21488 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u8_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u8) over (3.5.8-5+deb9u5) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u8) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... 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Unpacking libpango-1.0-0:amd64 (1.42.4-8~deb10u1) over (1.40.5-1) ... Preparing to unpack .../15-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) over (7.0-3) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../16-libwebp6_0.6.1-2+deb10u1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2+deb10u1) ... Preparing to unpack .../17-libtiff5_4.1.0+git191117-2~deb10u4_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2~deb10u4) over (4.0.8-2+deb9u5) ... Preparing to unpack .../18-libss2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libss2:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26857 files and directories currently installed.) Preparing to unpack .../libpangoft2-1.0-0_1.42.4-8~deb10u1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) over (1.40.5-1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up apt (1.8.2.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Setting up e2fslibs:amd64 (1.44.5-1+deb10u3) ... Setting up libjs-sifter.js (0.5.3+dfsg-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... Setting up libbrotli1:amd64 (1.0.7-2+deb10u1) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1) ... Setting up libc-ares2:amd64 (1.14.0-1+deb10u1) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libjs-d3 (3.5.17-2) ... Setting up libatomic1:amd64 (8.3.0-6) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up util-linux (2.33.1-0.1) ... update-alternatives: warning: alternative /usr/bin/pg (part of link group pager) doesn't exist; removing from list of alternatives Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up nodejs (10.24.0~dfsg-1~deb10u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up r-base-core (3.5.2-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Installing new version of config file /etc/R/Rprofile.site ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4) ... Setting up r-cran-gtable (0.2.0-3) ... Setting up r-cran-labeling (0.3-3) ... Setting up r-cran-sourcetools (0.1.7-2) ... Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-nlme (3.1.137-1+b3) ... Setting up r-cran-formatr (1.5-3) ... Setting up r-cran-formula (1.2-3-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Setting up r-cran-xml (3.98-1.17-1) ... Setting up r-cran-viridislite (0.3.0-3) ... Setting up r-cran-cluster (2.0.7-1-1+b3) ... Setting up r-cran-nnet (7.3-12-2+b2) ... Setting up r-cran-lazyeval (0.2.1-3) ... Setting up r-cran-r6 (2.4.0-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-chron (2.3-53-1) ... Setting up r-cran-fastcluster (1.1.25-2) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-bioc-genomeinfodbdata (1.2.0-1) ... Setting up r-cran-littler (0.3.6-1) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-cran-curl (3.3+dfsg-1) ... Setting up node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up r-cran-bindr (0.1.1-2) ... Setting up r-bioc-biocgenerics (0.28.0-2) ... Setting up r-cran-rlang (0.3.1-2) ... Setting up r-cran-matrixstats (0.54.0-1) ... Setting up r-cran-assertthat (0.2.0-2) ... Setting up r-cran-bindrcpp (0.2.2-2) ... Setting up r-cran-xfun (0.4-1) ... Setting up r-cran-sys (2.1-1) ... Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-backports (1.1.3-1) ... Setting up r-cran-mime (0.6-1) ... Setting up r-cran-base64enc (0.1-3-2) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-yaml (2.2.0-1) ... Setting up r-cran-lambda.r (1.2.3-2) ... Setting up r-bioc-protgenerics (1.14.0-1) ... Setting up r-cran-evaluate (0.13-1) ... Setting up r-cran-dbi (1.0.0-2) ... Setting up r-cran-highr (0.7+dfsg-1) ... Setting up r-cran-prettyunits (1.0.2-3) ... Setting up r-cran-fansi (0.4.0-1) ... Setting up r-cran-mass (7.3-51.1-1) ... Setting up r-cran-checkmate (1.9.1-1) ... Setting up r-cran-acepack (1.4.1-2+b4) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-cran-data.table (1.12.0+dfsg-1) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-foreign (0.8.71-1) ... Setting up r-cran-bit (1.1-14-1+b1) ... Setting up r-cran-xtable (1:1.8-3-1) ... Setting up r-cran-cli (1.0.1-1) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-cran-bit64 (0.9-7-3) ... Setting up r-cran-biocmanager (1.30.4+dfsg-1) ... Setting up r-cran-dichromat (1:2.0-0-2) ... Setting up r-bioc-zlibbioc (1.28.0+dfsg-1) ... Setting up r-cran-askpass (1.1-1) ... Setting up r-bioc-biocinstaller (1.32.1-1) ... Setting up r-bioc-biobase (2.42.0-1) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up r-cran-rstudioapi (0.9.0-1) ... Setting up r-cran-pkgconfig (2.0.2-1) ... Setting up r-cran-utf8 (1.1.4-1+b1) ... Setting up r-cran-colorspace (1.4-0+dfsg-1) ... Setting up r-cran-stringi (1.2.4-2) ... Setting up r-cran-markdown (0.9+dfsg-1) ... Setting up r-cran-plyr (1.8.4-2) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-bioc-s4vectors (0.20.1-2) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-gridextra (2.3-2) ... Setting up r-cran-hms (0.4.2-2) ... Setting up r-cran-memoise (1.1.0-2) ... Setting up r-cran-purrr (0.3.0-1) ... Setting up r-cran-later (0.7.5+dfsg-2) ... Setting up r-cran-blob (1.1.1-2) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up r-cran-htmltools (0.3.6-2) ... Setting up r-cran-mgcv (1.8-27-1) ... Setting up r-bioc-iranges (2.16.0-1) ... Setting up r-cran-rsqlite (2.1.1-2+b1) ... Setting up r-cran-rcurl (1.95-4.11-1) ... Setting up r-cran-progress (1.2.0-1) ... Setting up r-cran-pillar (1.3.1-1) ... Setting up r-cran-openssl (1.2.2+dfsg-1) ... Setting up r-cran-stringr (1.4.0-1) ... Setting up r-bioc-biocparallel (1.16.6-1) ... Setting up r-bioc-annotationdbi (1.44.0-1) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up r-cran-tibble (2.0.1-1) ... Setting up r-cran-survival (2.43-3-1) ... Setting up r-cran-latticeextra (0.6-28-2+b2) ... Setting up r-cran-htmlwidgets (1.3+dfsg-1) ... Setting up r-cran-tidyselect (0.2.5-1) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-bioc-genomeinfodb (1.18.1-1) ... Setting up r-cran-httr (1.4.0-3) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-cran-promises (1.0.1-2) ... Setting up r-bioc-biomart (2.38.0+dfsg-1) ... Setting up r-bioc-xvector (0.22.0-1) ... Setting up r-cran-knitr (1.21+dfsg-2) ... Setting up r-cran-dplyr (0.7.8-1) ... Setting up r-bioc-delayedarray (0.8.0+dfsg-2) ... Setting up r-cran-ggplot2 (3.1.0-1) ... Setting up r-bioc-genomicranges (1.34.0+dfsg-1) ... Setting up r-cran-httpuv (1.4.5.1+dfsg-1) ... Setting up r-cran-rpart (4.1-13-1+b1) ... Setting up r-bioc-biostrings (2.50.2-1) ... Setting up r-bioc-annotationfilter (1.6.0+dfsg-1) ... Setting up r-cran-shiny (1.2.0+dfsg-1) ... Setting up r-cran-viridis (0.5.1-2) ... Setting up r-cran-tidyr (0.8.2-1) ... Setting up r-bioc-rsamtools (1.34.1-1) ... Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Setting up r-bioc-interactivedisplaybase (1.20.0+dfsg-1) ... Setting up r-cran-htmltable (1.13.1-1) ... Setting up r-bioc-annotationhub (2.14.3+dfsg-1) ... Setting up r-bioc-genomicalignments (1.18.1-1) ... Setting up r-bioc-rtracklayer (1.42.1-2) ... Setting up r-bioc-genomicfeatures (1.34.3+dfsg-1) ... Setting up r-cran-hmisc (4.2-0-1) ... Setting up r-bioc-bsgenome (1.50.0-1) ... Setting up r-bioc-ensembldb (2.6.5+dfsg-1) ... Setting up r-bioc-variantannotation (1.28.10-1) ... Setting up r-bioc-biovizbase (1.30.1-1) ... Setting up r-bioc-gviz (1.26.4-1) ... Setting up r-bioc-cummerbund (2.24.0-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for fontconfig (2.13.1-2) ... 2m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-yf', 'dist-upgrade'] 2m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m18.0s DUMP: f6fc0f2636004ef589309651dfd778f4 - 2m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 2m18.2s DUMP: Package: r-bioc-cummerbund Version: 2.24.0-2 Installed-Size: 8929 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 3.5.1-2), r-api-3.5, r-api-bioc-3.8, r-bioc-biocgenerics (>= 0.3.2), r-cran-rsqlite, r-cran-ggplot2, r-cran-reshape2, r-cran-fastcluster, r-bioc-rtracklayer, r-bioc-gviz, r-cran-plyr, r-bioc-s4vectors (>= 0.9.25), r-bioc-biobase Suggests: r-cran-cluster, r-cran-stringr, r-bioc-genomicfeatures, r-bioc-genomicranges, r-cran-rjson Description-en: tool for analysis of Cufflinks RNA-Seq output Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations. Description-md5: b8e141232b6d17ca7806a2bfbcdae869 Homepage: https://bioconductor.org/packages/cummeRbund/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-cummerbund/r-bioc-cummerbund_2.24.0-2_all.deb Size: 2540440 MD5sum: ef097eb7bfa99e9a7ed301e9ca4b2578 SHA256: 346ba0a201050c6c99db624fd3a21e04c568697e5fa713b9072917335266e1f2 2m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-cummerbund'] 2m18.2s INFO: apt-cache knows about the following packages: r-bioc-cummerbund 2m18.2s INFO: Running scripts pre_install 2m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_database-server'] 2m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_database-server'] 2m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_exceptions'] 2m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_exceptions'] 2m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_extras'] 2m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_extras'] 2m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture'] 2m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture'] 2m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy'] 2m18.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy'] 2m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 2m18.3s DUMP: r-bioc-cummerbund: Installed: 2.24.0-2 Candidate: 2.24.0-2 Version table: *** 2.24.0-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 2m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 2m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 2m18.7s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-cummerbund is already the newest version (2.24.0-2). The following packages were automatically installed and are no longer required: libblas-common libgfortran3 libicu57 libidn11 libjs-jquery-metadata libjs-jquery-tablesorter libjs-twitter-bootstrap libssl1.0.2 libunistring0 r-bioc-biocinstaller Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'install', 'r-bioc-cummerbund'] 2m18.8s INFO: Running scripts post_install 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_install_exceptions'] 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_install_exceptions'] 2m18.8s INFO: Running scripts post_distupgrade 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_exceptions'] 2m18.8s DUMP: Normalized /etc/ca-certificates.conf 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_exceptions'] 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_zz_backports'] 2m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_distupgrade_zz_backports'] 2m18.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m20.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m21.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m21.0s INFO: Running scripts pre_install 2m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_database-server'] 2m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_database-server'] 2m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_exceptions'] 2m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_exceptions'] 2m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_extras'] 2m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_extras'] 2m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture'] 2m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture'] 2m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy'] 2m21.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy'] 2m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 2m21.2s DUMP: r-bioc-cummerbund: Installed: 2.24.0-2 Candidate: 2.24.0-2 Version table: *** 2.24.0-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 2m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-cache', 'policy', 'r-bioc-cummerbund'] 2m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'install', 'r-bioc-cummerbund=2.24.0-2'] 2m21.5s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-cummerbund is already the newest version (2.24.0-2). The following packages were automatically installed and are no longer required: libblas-common libgfortran3 libicu57 libidn11 libjs-jquery-metadata libjs-jquery-tablesorter libjs-twitter-bootstrap libssl1.0.2 libunistring0 r-bioc-biocinstaller Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', '-y', 'install', 'r-bioc-cummerbund=2.24.0-2'] 2m21.5s INFO: Running scripts post_install 2m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_install_exceptions'] 2m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_install_exceptions'] 2m21.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m22.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m24.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', '-ac', '--ignore-obsolete'] 2m27.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', '-ac', '--ignore-obsolete'] 2m27.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m27.6s DUMP: 0.15.6 2m27.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m27.6s INFO: Running adequate version 0.15.6 now. 2m27.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'r-bioc-cummerbund'] 2m27.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'r-bioc-cummerbund'] 2m27.7s INFO: Running scripts pre_remove 2m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_exceptions'] 2m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/pre_remove_exceptions'] 2m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m33.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.7-2+deb10u1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-ares2:amd64 libc-ares2 1.14.0-1+deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-d3 libjs-d3 3.5.17-2 install ok installed libjs-es5-shim libjs-es5-shim 4.5.12-1 install ok installed libjs-highlight.js libjs-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.19+dfsg-1 install ok installed libjs-jquery-metadata libjs-jquery-metadata 12-1.1 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 1:2.31.1+dfsg1-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5 install ok installed libjs-json libjs-json 0~20180723-2 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1 install ok installed libjs-sifter.js libjs-sifter.js 0.5.3+dfsg-1 install ok installed libjs-twitter-bootstrap libjs-twitter-bootstrap 2.0.2+dfsg-10 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libnode64:amd64 libnode64 10.24.0~dfsg-1~deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libuv1:amd64 libuv1 1.24.1-1+deb10u1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed littler littler 0.3.6-1 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed node-highlight.js node-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed node-normalize.css node-normalize.css 8.0.1-3 install ok installed nodejs nodejs 10.24.0~dfsg-1~deb10u1 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.44.0-1 install ok installed r-bioc-annotationfilter r-bioc-annotationfilter 1.6.0+dfsg-1 install ok installed r-bioc-annotationhub r-bioc-annotationhub 2.14.3+dfsg-1 install ok installed r-bioc-biobase r-bioc-biobase 2.42.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.28.0-2 install ok installed r-bioc-biocinstaller r-bioc-biocinstaller 1.32.1-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.16.6-1 install ok installed r-bioc-biomart r-bioc-biomart 2.38.0+dfsg-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.50.2-1 install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.30.1-1 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.50.0-1 install ok installed r-bioc-cummerbund r-bioc-cummerbund 2.24.0-2 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.8.0+dfsg-2 install ok installed r-bioc-ensembldb r-bioc-ensembldb 2.6.5+dfsg-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.18.1-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.0-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.18.1-1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.34.3+dfsg-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.34.0+dfsg-1 install ok installed r-bioc-gviz r-bioc-gviz 1.26.4-1 install ok installed r-bioc-interactivedisplaybase r-bioc-interactivedisplaybase 1.20.0+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.16.0-1 install ok installed r-bioc-protgenerics r-bioc-protgenerics 1.14.0-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.34.1-1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.42.1-2 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.20.1-2 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.12.0+dfsg-1 install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.28.10-1 install ok installed r-bioc-xvector r-bioc-xvector 0.22.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.28.0+dfsg-1 install ok installed r-cran-acepack r-cran-acepack 1.4.1-2+b4 install ok installed r-cran-askpass r-cran-askpass 1.1-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-backports r-cran-backports 1.1.3-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-2 install ok installed r-cran-bindr r-cran-bindr 0.1.1-2 install ok installed r-cran-bindrcpp r-cran-bindrcpp 0.2.2-2 install ok installed r-cran-biocmanager r-cran-biocmanager 1.30.4+dfsg-1 install ok installed r-cran-bit r-cran-bit 1.1-14-1+b1 install ok installed r-cran-bit64 r-cran-bit64 0.9-7-3 install ok installed r-cran-bitops r-cran-bitops 1.0-6-4 install ok installed r-cran-blob r-cran-blob 1.1.1-2 install ok installed r-cran-checkmate r-cran-checkmate 1.9.1-1 install ok installed r-cran-chron r-cran-chron 2.3-53-1 install ok installed r-cran-cli r-cran-cli 1.0.1-1 install ok installed r-cran-cluster r-cran-cluster 2.0.7-1-1+b3 install ok installed r-cran-colorspace r-cran-colorspace 1.4-0+dfsg-1 install ok installed r-cran-crayon r-cran-crayon 1.3.4-4 install ok installed r-cran-curl r-cran-curl 3.3+dfsg-1 install ok installed r-cran-data.table r-cran-data.table 1.12.0+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.0.0-2 install ok installed r-cran-dichromat r-cran-dichromat 1:2.0-0-2 install ok installed r-cran-digest r-cran-digest 0.6.18-1 install ok installed r-cran-dplyr r-cran-dplyr 0.7.8-1 install ok installed r-cran-evaluate r-cran-evaluate 0.13-1 install ok installed r-cran-fansi r-cran-fansi 0.4.0-1 install ok installed r-cran-fastcluster r-cran-fastcluster 1.1.25-2 install ok installed r-cran-foreign r-cran-foreign 0.8.71-1 install ok installed r-cran-formatr r-cran-formatr 1.5-3 install ok installed r-cran-formula r-cran-formula 1.2-3-2 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-3 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-2 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.1.0-1 install ok installed r-cran-glue r-cran-glue 1.3.0-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-2 install ok installed r-cran-gtable r-cran-gtable 0.2.0-3 install ok installed r-cran-highr r-cran-highr 0.7+dfsg-1 install ok installed r-cran-hmisc r-cran-hmisc 4.2-0-1 install ok installed r-cran-hms r-cran-hms 0.4.2-2 install ok installed r-cran-htmltable r-cran-htmltable 1.13.1-1 install ok installed r-cran-htmltools r-cran-htmltools 0.3.6-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.3+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.4.5.1+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.0-3 install ok installed r-cran-jsonlite r-cran-jsonlite 1.6+dfsg-1 install ok installed r-cran-knitr r-cran-knitr 1.21+dfsg-2 install ok installed r-cran-labeling r-cran-labeling 0.3-3 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.3-2 install ok installed r-cran-later r-cran-later 0.7.5+dfsg-2 install ok installed r-cran-lattice r-cran-lattice 0.20-38-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-28-2+b2 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.1-3 install ok installed r-cran-littler r-cran-littler 0.3.6-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-markdown r-cran-markdown 0.9+dfsg-1 install ok installed r-cran-mass r-cran-mass 7.3-51.1-1 install ok installed r-cran-matrix r-cran-matrix 1.2-15-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.54.0-1 install ok installed r-cran-memoise r-cran-memoise 1.1.0-2 install ok installed r-cran-mgcv r-cran-mgcv 1.8-27-1 install ok installed r-cran-mime r-cran-mime 0.6-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-1 install ok installed r-cran-nlme r-cran-nlme 3.1.137-1+b3 install ok installed r-cran-nnet r-cran-nnet 7.3-12-2+b2 install ok installed r-cran-openssl r-cran-openssl 1.2.2+dfsg-1 install ok installed r-cran-pillar r-cran-pillar 1.3.1-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-plyr r-cran-plyr 1.8.4-2 install ok installed r-cran-prettyunits r-cran-prettyunits 1.0.2-3 install ok installed r-cran-progress r-cran-progress 1.2.0-1 install ok installed r-cran-promises r-cran-promises 1.0.1-2 install ok installed r-cran-purrr r-cran-purrr 0.3.0-1 install ok installed r-cran-r6 r-cran-r6 2.4.0-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-2 install ok installed r-cran-rcpp r-cran-rcpp 1.0.0-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.11-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.3-2 install ok installed r-cran-rlang r-cran-rlang 0.3.1-2 install ok installed r-cran-rpart r-cran-rpart 4.1-13-1+b1 install ok installed r-cran-rsqlite r-cran-rsqlite 2.1.1-2+b1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.9.0-1 install ok installed r-cran-scales r-cran-scales 1.0.0-2 install ok installed r-cran-shiny r-cran-shiny 1.2.0+dfsg-1 install ok installed r-cran-snow r-cran-snow 1:0.4.3-1 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-2 install ok installed r-cran-stringi r-cran-stringi 1.2.4-2 install ok installed r-cran-stringr r-cran-stringr 1.4.0-1 install ok installed r-cran-survival r-cran-survival 2.43-3-1 install ok installed r-cran-sys r-cran-sys 2.1-1 install ok installed r-cran-tibble r-cran-tibble 2.0.1-1 install ok installed r-cran-tidyr r-cran-tidyr 0.8.2-1 install ok installed r-cran-tidyselect r-cran-tidyselect 0.2.5-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-1+b1 install ok installed r-cran-viridis r-cran-viridis 0.5.1-2 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-3 install ok installed r-cran-withr r-cran-withr 2.1.2-3 install ok installed r-cran-xfun r-cran-xfun 0.4-1 install ok installed r-cran-xml r-cran-xml 3.98-1.17-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-3-1 install ok installed r-cran-yaml r-cran-yaml 2.2.0-1 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-1+deb10u1 2m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libatomic1:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-sifter.js', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libnode64:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'openssl', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastcluster', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-cummerbund'] 2m35.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax libatomic1 libblas-common libblas3 libbrotli1 libbsd0 libc-ares2 libc-dev-bin libc6-dev libcairo2 libcurl4 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran3 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu57 libicu63 libidn11 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnghttp2-14 libnode64 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.2 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libuv1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 linux-libc-dev littler lsb-base node-highlight.js node-normalize.css nodejs openssl r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-protgenerics r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bindr r-cran-bindrcpp r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-colorspace r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-fastcluster r-cran-foreign r-cran-formatr r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml readline-common tzdata ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 245 to remove and 0 not upgraded. After this operation, 535 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26857 files and directories currently installed.) Removing r-bioc-cummerbund (2.24.0-2) ... Removing r-bioc-gviz (1.26.4-1) ... Removing r-bioc-biovizbase (1.30.1-1) ... Removing r-cran-hmisc (4.2-0-1) ... Removing r-cran-rpart (4.1-13-1+b1) ... Removing r-cran-survival (2.43-3-1) ... Removing r-bioc-variantannotation (1.28.10-1) ... Removing r-bioc-ensembldb (2.6.5+dfsg-1) ... Removing r-bioc-genomicfeatures (1.34.3+dfsg-1) ... Removing r-bioc-bsgenome (1.50.0-1) ... Removing r-cran-viridis (0.5.1-2) ... Removing r-cran-ggplot2 (3.1.0-1) ... Removing r-cran-mgcv (1.8-27-1) ... Removing r-cran-htmltable (1.13.1-1) ... Removing r-cran-tidyr (0.8.2-1) ... Removing r-bioc-annotationhub (2.14.3+dfsg-1) ... Removing r-bioc-interactivedisplaybase (1.20.0+dfsg-1) ... Removing r-cran-shiny (1.2.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/woff/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/svg/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/eot/font-awesome' not empty so not removed Removing r-cran-knitr (1.21+dfsg-2) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing libjs-mathjax (2.7.4+dfsg-1) ... Removing fonts-mathjax (2.7.4+dfsg-1) ... dpkg: warning: while removing fonts-mathjax, directory '/usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf' not empty so not removed dpkg: warning: while removing fonts-mathjax, directory '/usr/share/fonts/opentype' not empty so not removed Removing node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Removing nodejs (10.24.0~dfsg-1~deb10u1) ... Removing libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libblas-common (3.7.0-2) ... Removing littler (0.3.6-1) ... Removing libbrotli1:amd64 (1.0.7-2+deb10u1) ... Removing libc-ares2:amd64 (1.14.0-1+deb10u1) ... Removing r-bioc-annotationfilter (1.6.0+dfsg-1) ... Removing r-bioc-biomart (2.38.0+dfsg-1) ... Removing r-cran-httr (1.4.0-3) ... Removing r-cran-curl (3.3+dfsg-1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing r-cran-nlme (3.1.137-1+b3) ... Removing r-cran-cluster (2.0.7-1-1+b3) ... Removing r-cran-data.table (1.12.0+dfsg-1) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libjs-d3 (3.5.17-2) ... Removing libjs-es5-shim (4.5.12-1) ... Removing r-cran-highr (0.7+dfsg-1) ... Removing libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Removing libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Removing libjs-jquery-datatables (1.10.19+dfsg-1) ... Removing libjs-jquery-tablesorter (1:2.31.1+dfsg1-1) ... Removing libjs-jquery-metadata (12-1.1) ... Removing libjs-jquery-ui (1.12.1+dfsg-5) ... Removing libjs-json (0~20180723-2) ... Removing libjs-microplugin.js (0.0.3+dfsg-1) ... Removing libjs-sifter.js (0.5.3+dfsg-1) ... Removing r-cran-acepack (1.4.1-2+b4) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing r-cran-openssl (1.2.2+dfsg-1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing r-cran-httpuv (1.4.5.1+dfsg-1) ... Removing libuv1:amd64 (1.24.1-1+deb10u1) ... Removing node-normalize.css (8.0.1-3) ... Removing r-bioc-annotationdbi (1.44.0-1) ... Removing r-bioc-biocinstaller (1.32.1-1) ... Removing r-bioc-protgenerics (1.14.0-1) ... Removing r-cran-askpass (1.1-1) ... Removing r-cran-rsqlite (2.1.1-2+b1) ... Removing r-cran-blob (1.1.1-2) ... Removing r-cran-progress (1.2.0-1) ... Removing r-cran-prettyunits (1.0.2-3) ... Removing r-cran-dplyr (0.7.8-1) ... Removing r-cran-checkmate (1.9.1-1) ... Removing r-cran-backports (1.1.3-1) ... Removing r-cran-base64enc (0.1-3-2) ... Removing r-cran-bindrcpp (0.2.2-2) ... Removing r-cran-bindr (0.1.1-2) ... Removing r-cran-biocmanager (1.30.4+dfsg-1) ... Removing r-cran-bit64 (0.9-7-3) ... Removing r-cran-bit (1.1-14-1+b1) ... Removing r-cran-chron (2.3-53-1) ... Removing r-cran-tibble (2.0.1-1) ... Removing r-cran-pillar (1.3.1-1) ... Removing r-cran-cli (1.0.1-1) ... Removing r-cran-scales (1.0.0-2) ... Removing r-cran-munsell (0.5.0-1) ... Removing r-cran-colorspace (1.4-0+dfsg-1) ... Removing r-cran-crayon (1.3.4-4) ... Removing r-cran-dbi (1.0.0-2) ... Removing r-cran-dichromat (1:2.0-0-2) ... Removing r-cran-memoise (1.1.0-2) ... Removing r-cran-htmlwidgets (1.3+dfsg-1) ... Removing r-cran-htmltools (0.3.6-2) ... Removing r-cran-digest (0.6.18-1) ... Removing r-cran-evaluate (0.13-1) ... Removing r-cran-fansi (0.4.0-1) ... Removing r-cran-fastcluster (1.1.25-2) ... Removing r-cran-foreign (0.8.71-1) ... Removing r-cran-formula (1.2-3-2) ... Removing r-cran-reshape2 (1.4.3-2) ... Removing r-cran-stringr (1.4.0-1) ... Removing r-cran-gridextra (2.3-2) ... Removing r-cran-gtable (0.2.0-3) ... Removing r-cran-hms (0.4.2-2) ... Removing r-cran-jsonlite (1.6+dfsg-1) ... Removing r-cran-labeling (0.3-3) ... Removing r-cran-promises (1.0.1-2) ... Removing r-cran-later (0.7.5+dfsg-2) ... Removing r-cran-latticeextra (0.6-28-2+b2) ... Removing r-cran-lazyeval (0.2.1-3) ... Removing r-cran-markdown (0.9+dfsg-1) ... Removing r-cran-mass (7.3-51.1-1) ... Removing r-cran-mime (0.6-1) ... Removing r-cran-nnet (7.3-12-2+b2) ... Removing r-cran-pkgconfig (2.0.2-1) ... Removing r-cran-plyr (1.8.4-2) ... Removing r-cran-r6 (2.4.0-1) ... Removing r-cran-rcolorbrewer (1.1-2-2) ... Removing r-cran-rstudioapi (0.9.0-1) ... Removing r-cran-sourcetools (0.1.7-2) ... Removing r-cran-stringi (1.2.4-2) ... Removing r-cran-sys (2.1-1) ... Removing r-cran-utf8 (1.1.4-1+b1) ... Removing r-cran-viridislite (0.3.0-3) ... Removing r-cran-withr (2.1.2-3) ... Removing r-cran-xfun (0.4-1) ... Removing r-cran-xtable (1:1.8-3-1) ... Removing r-cran-yaml (2.2.0-1) ... Removing r-bioc-rtracklayer (1.42.1-2) ... Removing r-bioc-genomicalignments (1.18.1-1) ... Removing r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Removing r-bioc-delayedarray (0.8.0+dfsg-2) ... Removing r-bioc-rsamtools (1.34.1-1) ... Removing r-bioc-biocparallel (1.16.6-1) ... Removing r-cran-snow (1:0.4.3-1) ... Removing r-cran-matrix (1.2-15-1) ... Removing r-cran-tidyselect (0.2.5-1) ... Removing r-cran-rcpp (1.0.0-1) ... Removing r-cran-littler (0.3.6-1) ... Removing r-bioc-zlibbioc (1.28.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing r-bioc-genomicranges (1.34.0+dfsg-1) ... Removing r-bioc-genomeinfodb (1.18.1-1) ... Removing r-cran-rcurl (1.95-4.11-1) ... Removing r-cran-xml (3.98-1.17-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... dpkg: warning: while removing libjs-jquery, directory '/usr/share/javascript' not empty so not removed Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing r-bioc-biobase (2.42.0-1) ... Removing r-bioc-biostrings (2.50.2-1) ... Removing r-bioc-xvector (0.22.0-1) ... Removing r-bioc-iranges (2.16.0-1) ... Removing r-bioc-s4vectors (0.20.1-2) ... Removing r-bioc-biocgenerics (0.28.0-2) ... Removing r-bioc-genomeinfodbdata (1.2.0-1) ... Removing r-cran-assertthat (0.2.0-2) ... Removing r-cran-bitops (1.0-6-4) ... Removing r-cran-futile.logger (1.4.3-3) ... Removing r-cran-lambda.r (1.2.3-2) ... Removing r-cran-formatr (1.5-3) ... Removing r-cran-futile.options (1.0.1-2) ... Removing r-cran-glue (1.3.0-1) ... Removing r-cran-lattice (0.20-38-1) ... Removing r-cran-purrr (0.3.0-1) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-matrixstats (0.54.0-1) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing r-cran-rlang (0.3.1-2) ... Removing r-base-core (3.5.2-1) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libreadline7:amd64 (7.0-5) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing openssl (1.1.1n-0+deb10u3) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing readline-common (7.0-5) ... Removing tzdata (2021a-0+deb10u6) ... Removing ucf (3.0038+nmu1) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 2m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libatomic1:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-sifter.js', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libnode64:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'openssl', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastcluster', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-cummerbund'] 2m36.0s INFO: Running scripts post_remove 2m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_remove_exceptions'] 2m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_remove_exceptions'] 2m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libatomic1:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-sifter.js', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libnode64:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'openssl', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastcluster', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 2m37.2s DUMP: (Reading database ... 4678 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-es5-shim which isn't installed dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-metadata which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-tablesorter which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-5) ... dpkg: warning: ignoring request to remove libjs-json which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-microplugin.js which isn't installed dpkg: warning: ignoring request to remove libjs-sifter.js which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnode64 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libuv1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove node-highlight.js which isn't installed dpkg: warning: ignoring request to remove node-normalize.css which isn't installed dpkg: warning: ignoring request to remove nodejs which isn't installed Purging configuration files for openssl (1.1.1n-0+deb10u3) ... Purging configuration files for r-base-core (3.5.2-1) ... dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationfilter which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationhub which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocinstaller which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biomart which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-biovizbase which isn't installed dpkg: warning: ignoring request to remove r-bioc-bsgenome which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-ensembldb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-gviz which isn't installed dpkg: warning: ignoring request to remove r-bioc-interactivedisplaybase which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-protgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-variantannotation which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-acepack which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-bindr which isn't installed dpkg: warning: ignoring request to remove r-cran-bindrcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-biocmanager which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-chron which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-fastcluster which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltable which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed Purging configuration files for r-cran-rcurl (1.95-4.11-1) ... dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-viridis which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed Purging configuration files for readline-common (7.0-5) ... Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libatomic1:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-sifter.js', 'libjs-twitter-bootstrap', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libnode64:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'openssl', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocinstaller', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-gviz', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastcluster', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--purge', 'r-bioc-cummerbund'] 2m37.2s DUMP: dpkg: warning: ignoring request to remove r-bioc-cummerbund which isn't installed 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--purge', 'r-bioc-cummerbund'] 2m37.2s INFO: Running scripts post_purge 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_purge_exceptions'] 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_purge_exceptions'] 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--purge', '--pending'] 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--purge', '--pending'] 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--remove', '--pending'] 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg', '--remove', '--pending'] 2m37.2s INFO: Running scripts post_test 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_test_exceptions'] 2m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'tmp/scripts/post_test_exceptions'] 2m37.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m37.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg-divert', '--list'] 2m37.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'dpkg-divert', '--list'] 2m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'clean'] 2m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh', 'apt-get', 'clean'] 2m37.7s DEBUG: Recording chroot state 2m38.2s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-glyphicons-halflings, fonts-mathjax, fonts-font-awesome, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/eot/ owned by: fonts-font-awesome /usr/share/fonts/eot/.uuid not owned /usr/share/fonts/eot/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/eot/font-awesome/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/svg/ owned by: fonts-font-awesome /usr/share/fonts/svg/.uuid not owned /usr/share/fonts/svg/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/svg/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-glyphicons-halflings, fonts-font-awesome, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/woff/ owned by: fonts-font-awesome /usr/share/fonts/woff/.uuid not owned /usr/share/fonts/woff/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/woff/font-awesome/.uuid not owned /usr/share/javascript/ owned by: libjs-d3, libjs-jquery-selectize.js, libjs-microplugin.js, libjs-sifter.js, node-normalize.css, libjs-bootstrap, libjs-twitter-bootstrap-datepicker, libjs-mathjax, libjs-json, libjs-jquery-ui, libjs-jquery-tablesorter, libjs-jquery-metadata, libjs-jquery-datatables, libjs-jquery, libjs-highlight.js, libjs-es5-shim, fonts-mathjax, fonts-font-awesome, libjs-twitter-bootstrap /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned 2m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/shm'] 2m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/shm'] 2m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/console'] 2m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/console'] 2m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/ptmx'] 2m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/ptmx'] 2m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/pts'] 2m38.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/dev/pts'] 2m38.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/proc'] 2m38.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh/proc'] 2m38.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m38.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdv4vmmgh'] 2m38.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpdv4vmmgh 2m38.6s INFO: PASS: Upgrading between Debian distributions. 2m38.6s INFO: PASS: All tests. 2m38.6s INFO: piuparts run ends. ret=0 End: 2023-04-21 16:58:19 GMT