Start: 2022-12-18 10:49:01 GMT [stretch] Package: snakemake Version: 3.10.0-1 Installed-Size: 1734 Maintainer: Debian Med Packaging Architecture: all Depends: python3-wrapt, python3:any (>= 3.3.2-2~), libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common, python3-docutils, python3-pytools, python3-rpy2, python3-setuptools, python3-yaml, libjs-mathjax, ca-certificates Description: pythonic workflow management system Homepage: https://bitbucket.org/snakemake/snakemake Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_3.10.0-1_all.deb Size: 326428 MD5sum: 940c3241584cfcf7044ca1ac9a0524e2 SHA256: 5cbbfea6ca1c66d36dd6349c8824e14e989607a897d0be09a7ccb242860b6d69 [buster] Package: snakemake Version: 5.4.0-1 Installed-Size: 3547 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-ratelimiter, python3-requests, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common (>= 0.4.2+dfsg), ca-certificates, libjs-d3, libjs-mathjax, python3-networkx, python3-psutil, python3-pygraphviz, python3-pytools, python3-recommonmark, python3-rpy2, python3-setuptools Recommends: python3-boto, r-cran-rmarkdown Description: pythonic workflow management system Homepage: https://bitbucket.org/snakemake/snakemake Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_5.4.0-1_all.deb Size: 716952 MD5sum: 9935ad6a3c4cbeaf289754d865a57010 SHA256: e73be4d0140060f5ead10185e83b52e084f3346380e58649d1bce78a187d112c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat --apt snakemake=5.4.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --upgrade-before-dist-upgrade --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat --apt snakemake=5.4.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6zd81d6y 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6zd81d6y 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6zd81d6y/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'update'] 0m2.5s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2Xbuster/reference-chroot-metadata.dat 0m3.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 0m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 0m4.2s INFO: Running scripts is_testable 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s INFO: Running scripts pre_test 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_test_root_password'] 0m4.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_test_root_password'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.4s DUMP: Package: snakemake Version: 3.10.0-1 Installed-Size: 1734 Maintainer: Debian Med Packaging Architecture: all Depends: python3-wrapt, python3:any (>= 3.3.2-2~), libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common, python3-docutils, python3-pytools, python3-rpy2, python3-setuptools, python3-yaml, libjs-mathjax, ca-certificates Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://bitbucket.org/snakemake/snakemake Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_3.10.0-1_all.deb Size: 326428 MD5sum: 940c3241584cfcf7044ca1ac9a0524e2 SHA256: 5cbbfea6ca1c66d36dd6349c8824e14e989607a897d0be09a7ccb242860b6d69 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.4s INFO: apt-cache knows about the following packages: snakemake 0m4.4s INFO: Running scripts pre_install 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy'] 0m4.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy', 'snakemake'] 0m4.5s DUMP: snakemake: Installed: (none) Candidate: 3.10.0-1 Version table: 3.10.0-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy', 'snakemake'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'install', 'snakemake'] 0m29.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates dh-python docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libjs-jquery libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmpdec2 libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 libyaml-0-2 lsb-base mime-support openssl python3 python3-appdirs python3-decorator python3-docutils python3-minimal python3-numpy python3-pkg-resources python3-pytools python3-roman python3-rpy2 python3-setuptools python3-six python3-wrapt python3-yaml python3.5 python3.5-minimal r-base-core readline-common sgml-base sphinx-rtd-theme-common tzdata ucf unzip x11-common xdg-utils xml-core zip Suggested packages: libdpkg-perl gnutls-bin krb5-doc krb5-user fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 python3-doc python3-tk python3-venv docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended gcc gfortran python-numpy-doc python3-dev python3-nose python3-numpy-dbg python-rpy-docs python-setuptools-doc python3.5-venv python3.5-doc binutils binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html readline-doc sgml-base-doc gvfs-bin debhelper Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix libsasl2-modules bzip2 file xz-utils python3-pil python3-pygments r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates dh-python docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libjs-jquery libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmpdec2 libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 libyaml-0-2 lsb-base mime-support openssl python3 python3-appdirs python3-decorator python3-docutils python3-minimal python3-numpy python3-pkg-resources python3-pytools python3-roman python3-rpy2 python3-setuptools python3-six python3-wrapt python3-yaml python3.5 python3.5-minimal r-base-core readline-common sgml-base snakemake sphinx-rtd-theme-common tzdata ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 72.6 MB of archives. After this operation, 234 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 fonts-lato all 2.0-1 [2684 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libpython3.5-minimal amd64 3.5.3-1+deb9u1 [573 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 python3.5-minimal amd64 3.5.3-1+deb9u1 [1691 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 python3-minimal amd64 3.5.3-1 [35.3 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libpython3.5-stdlib amd64 3.5.3-1+deb9u1 [2167 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 python3.5 amd64 3.5.3-1+deb9u1 [229 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libpython3-stdlib amd64 3.5.3-1 [18.6 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 dh-python all 2.20170125 [86.8 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 python3 amd64 3.5.3-1 [21.6 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 docutils-common all 0.13.1+dfsg-2 [200 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 fonts-mathjax all 2.7.0-2 [960 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 python3-appdirs all 1.4.0-3 [11.3 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 python3-decorator all 4.0.11-1 [13.3 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 python3-roman all 2.0.0-2 [8226 B] Get:106 http://deb.debian.org/debian stretch/main amd64 python3-docutils all 0.13.1+dfsg-2 [371 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 python3-numpy amd64 1:1.12.1-3 [1934 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 python3-pkg-resources all 33.1.1-1 [137 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 python3-six all 1.10.0-3 [14.4 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 python3-pytools all 2016.2.6-1 [34.4 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:115 http://deb.debian.org/debian stretch/main amd64 python3-rpy2 amd64 2.8.5-1 [138 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 python3-setuptools all 33.1.1-1 [215 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 python3-wrapt amd64 1.9.0-2 [31.5 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 python3-yaml amd64 3.12-1 [108 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libjs-modernizr all 2.6.2+ds1-1 [71.3 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 sphinx-rtd-theme-common all 0.1.9-1 [210 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 libjs-mathjax all 2.7.0-2 [5603 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 snakemake all 3.10.0-1 [326 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 72.6 MB in 1s (63.0 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../01-libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Selecting previously unselected package libfreetype6:amd64. 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Preparing to unpack .../82-python3-rpy2_2.8.5-1_amd64.deb ... Unpacking python3-rpy2 (2.8.5-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../83-python3-setuptools_33.1.1-1_all.deb ... Unpacking python3-setuptools (33.1.1-1) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../84-python3-wrapt_1.9.0-2_amd64.deb ... Unpacking python3-wrapt (1.9.0-2) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../85-python3-yaml_3.12-1_amd64.deb ... Unpacking python3-yaml (3.12-1) ... Selecting previously unselected package libjs-modernizr. Preparing to unpack .../86-libjs-modernizr_2.6.2+ds1-1_all.deb ... Unpacking libjs-modernizr (2.6.2+ds1-1) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../87-sphinx-rtd-theme-common_0.1.9-1_all.deb ... Unpacking sphinx-rtd-theme-common (0.1.9-1) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../88-libjs-mathjax_2.7.0-2_all.deb ... Unpacking libjs-mathjax (2.7.0-2) ... Selecting previously unselected package snakemake. Preparing to unpack .../89-snakemake_3.10.0-1_all.deb ... Unpacking snakemake (3.10.0-1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up fonts-mathjax (2.7.0-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up mime-support (3.60) ... Setting up libjs-mathjax (2.7.0-2) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 18 10:49:17 UTC 2022. Universal Time is now: Sun Dec 18 10:49:17 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libjs-sphinxdoc (1.4.9-2) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up sgml-base (1.29) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up ucf (3.0036) ... Setting up fonts-font-awesome (4.7.0~dfsg-1) ... Setting up zip (3.0-11+b1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up lsb-base (9.20161125) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up fonts-lato (2.0-1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libjs-modernizr (2.6.2+ds1-1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up sphinx-rtd-theme-common (0.1.9-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up python3.5 (3.5.3-1+deb9u1) ... Setting up libpython3-stdlib:amd64 (3.5.3-1) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.13.1+dfsg-2) ... Processing triggers for sgml-base (1.29) ... Setting up python3 (3.5.3-1) ... Setting up python3-numpy (1:1.12.1-3) ... Setting up python3-six (1.10.0-3) ... Setting up python3-rpy2 (2.8.5-1) ... Setting up python3-appdirs (1.4.0-3) ... Setting up python3-pkg-resources (33.1.1-1) ... Setting up python3-wrapt (1.9.0-2) ... Setting up python3-setuptools (33.1.1-1) ... Setting up dh-python (2.20170125) ... Setting up python3-decorator (4.0.11-1) ... Setting up python3-yaml (3.12-1) ... Setting up python3-roman (2.0.0-2) ... Setting up python3-pytools (2016.2.6-1) ... Setting up python3-docutils (0.13.1+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up snakemake (3.10.0-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'install', 'snakemake'] 0m29.0s INFO: Running scripts post_install 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_install_exceptions'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_install_exceptions'] 0m29.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 0m29.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 0m29.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp6zd81d6y to buster 0m29.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m29.5s INFO: Running scripts pre_distupgrade 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_exceptions'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_exceptions'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'update'] 0m32.9s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 2s (5574 kB/s) Reading package lists... 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'update'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'upgrade'] 0m58.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages have been kept back: apt bash dash dpkg e2fslibs e2fsprogs libapt-pkg5.0 libblas3 libcomerr2 libgcc1 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libncursesw5 libpango-1.0-0 libpangoft2-1.0-0 libpsl5 libpython3-stdlib libquadmath0 libreadline7 libss2 libstdc++6 libtiff5 libtinfo5 login mount ncurses-base ncurses-bin python3 python3-minimal python3-numpy python3-pkg-resources python3-rpy2 python3-setuptools python3-wrapt python3-yaml r-base-core snakemake sphinx-rtd-theme-common util-linux The following packages will be upgraded: adduser base-files base-passwd bsdutils ca-certificates coreutils debconf debian-archive-keyring debianutils dh-python diffutils docutils-common findutils fontconfig fontconfig-config fonts-font-awesome fonts-lato fonts-mathjax gpgv grep gzip hostname init-system-helpers libacl1 libattr1 libaudit-common libaudit1 libblkid1 libbsd0 libbz2-1.0 libc-bin libc6 libcairo2 libcap-ng0 libdatrie1 libdb5.3 libdebconfclient0 libexpat1 libfdisk1 libffi6 libfontconfig1 libfreetype6 libgcrypt20 libglib2.0-0 libgmp10 libgpg-error0 libgraphite2-3 libharfbuzz0b libhogweed4 libidn11 libjpeg62-turbo libjs-jquery libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libkeyutils1 libldap-common liblz4-1 liblzma5 libmount1 libmpdec2 libnettle6 libnghttp2-14 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpangocairo-1.0-0 libpaper-utils libpaper1 libpcre3 libpixman-1-0 libpng16-16 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsm6 libsmartcols1 libsqlite3-0 libssh2-1 libssl1.1 libsystemd0 libtasn1-6 libtcl8.6 libthai-data libthai0 libtk8.6 libudev1 libuuid1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxft2 libxss1 libxt6 libyaml-0-2 lsb-base mime-support multiarch-support openssl passwd perl-base python3-appdirs python3-decorator python3-docutils python3-pytools python3-roman python3-six readline-common sed sensible-utils sysvinit-utils tar tzdata ucf unzip xdg-utils xml-core zlib1g 128 upgraded, 0 newly installed, 0 to remove and 46 not upgraded. Need to get 45.9 MB of archives. After this operation, 11.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:5 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:6 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:7 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:8 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:9 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:10 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:11 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:12 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:13 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:14 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:16 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:17 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:18 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:19 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:31 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:37 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:38 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:39 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:40 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:41 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:42 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:49 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:50 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:54 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:55 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:56 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:57 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:59 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:60 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:61 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get:62 http://deb.debian.org/debian buster/main amd64 python3-roman all 2.0.0-3 [8768 B] Get:63 http://deb.debian.org/debian buster/main amd64 python3-docutils all 0.14+dfsg-4 [378 kB] Get:64 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:65 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:70 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:71 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:72 http://deb.debian.org/debian buster/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB] Get:73 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libjs-modernizr all 2.6.2+ds1-3 [46.7 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:106 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:121 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:122 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:123 http://deb.debian.org/debian buster/main amd64 python3-appdirs all 1.4.3-1 [12.0 kB] Get:124 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:125 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:126 http://deb.debian.org/debian buster/main amd64 python3-pytools all 2019.1-1 [39.0 kB] Get:127 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:128 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] debconf: delaying package configuration, since apt-utils is not 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Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15731 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.33.1-0.1_amd64.deb ... Unpacking libfdisk1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libfdisk1:amd64 (2.33.1-0.1) ... (Reading database ... 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Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up ucf (3.0038+nmu1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libtasn1-6:amd64 (4.13-3) ... Setting up lsb-base (10.2019051400) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up fonts-lato (2.0-2) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up libffi6:amd64 (3.2.1-9) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up libthai-data (0.1.28-2) ... Setting up xml-core (0.18+nmu1) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up dh-python (3.20190308) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up libjs-modernizr (2.6.2+ds1-3) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libpaper1:amd64 (1.1.28) ... Setting up libpaper-utils (1.1.28) ... Setting up fontconfig-config (2.13.1-2) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up python3-pytools (2019.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'upgrade'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-yf', 'dist-upgrade'] 1m26.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: dh-python libblas-common libgfortran3 libicu57 libidn11 libpython3.5-minimal libpython3.5-stdlib libssl1.0.2 libunistring0 python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libcurl3 The following NEW packages will be installed: fdisk fonts-roboto-slab gcc-8-base git git-man graphviz libcdt5 libcgraph6 libcom-err2 libcurl3-gnutls libcurl4 liberror-perl libext2fs2 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libgts-0.7-5 libgvc6 libgvpr2 libicu63 libjs-d3 liblab-gamut1 libltdl7 libncursesw6 libpathplan4 libpcre2-8-0 libperl5.28 libpython3.7-minimal libpython3.7-stdlib libseccomp2 libtinfo6 libunistring2 libwebp6 libxaw7 libxdot4 libxmu6 libxpm4 libzstd1 perl perl-modules-5.28 python3-certifi python3-chardet python3-commonmark-bkrs python3-configargparse python3-datrie python3-distutils python3-git python3-gitdb python3-idna python3-jinja2 python3-jsonschema python3-lib2to3 python3-markupsafe python3-networkx python3-psutil python3-pygraphviz python3-ratelimiter python3-recommonmark python3-requests python3-smmap python3-urllib3 python3.7 python3.7-minimal The following packages will be upgraded: apt bash dash dpkg e2fslibs e2fsprogs libapt-pkg5.0 libblas3 libcomerr2 libgcc1 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libk5crypto3 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libncursesw5 libpango-1.0-0 libpangoft2-1.0-0 libpsl5 libpython3-stdlib libquadmath0 libreadline7 libss2 libstdc++6 libtiff5 libtinfo5 login mount ncurses-base ncurses-bin python3 python3-minimal python3-numpy python3-pkg-resources python3-rpy2 python3-setuptools python3-wrapt python3-yaml r-base-core snakemake sphinx-rtd-theme-common util-linux 46 upgraded, 65 newly installed, 1 to remove and 0 not upgraded. Need to get 80.8 MB of archives. After this operation, 181 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:2 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:8 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:12 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:13 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:14 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:18 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:19 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:21 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:22 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:23 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:24 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:25 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:28 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:38 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:39 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:42 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:48 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:52 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 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python3-datrie amd64 0.7.1-2 [155 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libpcre2-8-0 amd64 10.32-5 [213 kB] Get:67 http://deb.debian.org/debian buster/main amd64 liberror-perl all 0.17027-2 [30.9 kB] Get:68 http://deb.debian.org/debian buster/main amd64 git-man all 1:2.20.1-2+deb10u3 [1620 kB] Get:69 http://deb.debian.org/debian buster/main amd64 git amd64 1:2.20.1-2+deb10u3 [5633 kB] Get:70 http://deb.debian.org/debian buster/main amd64 python3-smmap all 2.0.5-1 [21.2 kB] Get:71 http://deb.debian.org/debian buster/main amd64 python3-gitdb all 2.0.5-1 [46.8 kB] Get:72 http://deb.debian.org/debian buster/main amd64 python3-git all 2.1.11-1 [304 kB] Get:73 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:74 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:75 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get:76 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:77 http://deb.debian.org/debian buster/main amd64 python3-jsonschema all 2.6.0-4 [33.5 kB] Get:78 http://deb.debian.org/debian buster/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get:79 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:80 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:81 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:82 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:83 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:84 http://deb.debian.org/debian buster/main amd64 fonts-roboto-slab all 1.100263+20170512-1 [207 kB] Get:85 http://deb.debian.org/debian buster/main amd64 sphinx-rtd-theme-common all 0.4.3+dfsg-1 [1021 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:87 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get:88 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get:100 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:103 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get:104 http://deb.debian.org/debian buster/main amd64 python3-pygraphviz amd64 1.5-1 [76.6 kB] Get:105 http://deb.debian.org/debian buster/main amd64 python3-commonmark-bkrs all 0.5.4+ds-2 [28.2 kB] Get:106 http://deb.debian.org/debian buster/main amd64 python3-recommonmark all 0.4.0+ds-5 [14.9 kB] Get:107 http://deb.debian.org/debian buster/main amd64 snakemake all 5.4.0-1 [717 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:109 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.8 MB in 3s (26.1 MB/s) Selecting previously unselected package libtinfo6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15946 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... 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Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode Selecting previously unselected package libzstd1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15957 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3+deb10u2_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15963 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... (Reading database ... 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Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libpathplan4 (2.40.1-6+deb10u1) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libjs-d3 (3.5.17-2) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up util-linux (2.33.1-0.1) ... update-alternatives: warning: alternative /usr/bin/pg (part of link group pager) doesn't exist; removing from list of alternatives Setting up libpcre2-8-0:amd64 (10.32-5) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up git-man (1:2.20.1-2+deb10u3) ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up sphinx-rtd-theme-common (0.4.3+dfsg-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up python3 (3.7.3-1) ... Setting up python3-markupsafe (1.1.0-1) ... Setting up python3-psutil (5.5.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up perl (5.28.1-6+deb10u1) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up r-base-core (3.5.2-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Installing new version of config file /etc/R/Rprofile.site ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up python3-idna (2.6-1) ... Setting up python3-wrapt (1.10.11-1) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-commonmark-bkrs (0.5.4+ds-2) ... Setting up python3-datrie:amd64 (0.7.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-smmap (2.0.5-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up python3-configargparse (0.13.0-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python3-yaml (3.13-2) ... Setting up python3-gitdb (2.0.5-1) ... Setting up python3-recommonmark (0.4.0+ds-5) ... Setting up python3-networkx (2.2-1) ... Setting up liberror-perl (0.17027-2) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-jsonschema (2.6.0-4) ... update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up python3-requests (2.21.0-1) ... Setting up git (1:2.20.1-2+deb10u3) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python3-rpy2 (2.9.5-1) ... Setting up python3-pygraphviz (1.5-1) ... Setting up python3-git (2.1.11-1) ... Setting up snakemake (5.4.0-1) ... Processing triggers for mime-support (3.62) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for fontconfig (2.13.1-2) ... 1m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-yf', 'dist-upgrade'] 1m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m28.1s DUMP: f6fc0f2636004ef589309651dfd778f4 - 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 1m28.3s DUMP: Package: snakemake Version: 5.4.0-1 Installed-Size: 3547 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-ratelimiter, python3-requests, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common (>= 0.4.2+dfsg), ca-certificates, libjs-d3, libjs-mathjax, python3-networkx, python3-psutil, python3-pygraphviz, python3-pytools, python3-recommonmark, python3-rpy2, python3-setuptools Recommends: python3-boto, r-cran-rmarkdown Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://bitbucket.org/snakemake/snakemake Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_5.4.0-1_all.deb Size: 716952 MD5sum: 9935ad6a3c4cbeaf289754d865a57010 SHA256: e73be4d0140060f5ead10185e83b52e084f3346380e58649d1bce78a187d112c 1m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 1m28.3s INFO: apt-cache knows about the following packages: snakemake 1m28.3s INFO: Running scripts pre_install 1m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_database-server'] 1m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_database-server'] 1m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_exceptions'] 1m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_exceptions'] 1m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_extras'] 1m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_extras'] 1m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture'] 1m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture'] 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy'] 1m28.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy'] 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy', 'snakemake'] 1m28.5s DUMP: snakemake: Installed: 5.4.0-1 Candidate: 5.4.0-1 Version table: *** 5.4.0-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy', 'snakemake'] 1m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'install', 'snakemake'] 1m28.8s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (5.4.0-1). The following packages were automatically installed and are no longer required: dh-python libblas-common libgfortran3 libicu57 libidn11 libpython3.5-minimal libpython3.5-stdlib libssl1.0.2 libunistring0 python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'install', 'snakemake'] 1m28.8s INFO: Running scripts post_install 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_install_exceptions'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_install_exceptions'] 1m28.8s INFO: Running scripts post_distupgrade 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_exceptions'] 1m28.9s DUMP: Normalized /etc/ca-certificates.conf 1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_exceptions'] 1m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_zz_backports'] 1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_distupgrade_zz_backports'] 1m28.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m29.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m29.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m30.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m30.5s INFO: Running scripts pre_install 1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_database-server'] 1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_database-server'] 1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_exceptions'] 1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_exceptions'] 1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_extras'] 1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_extras'] 1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture'] 1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture'] 1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy'] 1m30.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy'] 1m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy', 'snakemake'] 1m30.6s DUMP: snakemake: Installed: 5.4.0-1 Candidate: 5.4.0-1 Version table: *** 5.4.0-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-cache', 'policy', 'snakemake'] 1m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'install', 'snakemake=5.4.0-1'] 1m31.0s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (5.4.0-1). The following packages were automatically installed and are no longer required: dh-python libblas-common libgfortran3 libicu57 libidn11 libpython3.5-minimal libpython3.5-stdlib libssl1.0.2 libunistring0 python3.5 python3.5-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', '-y', 'install', 'snakemake=5.4.0-1'] 1m31.0s INFO: Running scripts post_install 1m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_install_exceptions'] 1m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_install_exceptions'] 1m31.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m31.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m33.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', '-ac', '--ignore-obsolete'] 1m35.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', '-ac', '--ignore-obsolete'] 1m35.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m35.1s DUMP: 0.15.6 1m35.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m35.1s INFO: Running adequate version 0.15.6 now. 1m35.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'snakemake'] 1m35.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'snakemake'] 1m35.2s INFO: Running scripts pre_remove 1m35.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_exceptions'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/pre_remove_exceptions'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m38.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed dh-python dh-python 3.20190308 install ok installed diffutils diffutils 1:3.7-3 install ok installed docutils-common docutils-common 0.14+dfsg-4 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-1 install ok installed fonts-lato fonts-lato 2.0-2 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed fonts-roboto-slab fonts-roboto-slab 1.100263+20170512-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed git git 1:2.20.1-2+deb10u3 install ok installed git-man git-man 1:2.20.1-2+deb10u3 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed graphviz graphviz 2.40.1-6+deb10u1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcdt5 libcdt5 2.40.1-6+deb10u1 install ok installed libcgraph6 libcgraph6 2.40.1-6+deb10u1 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed liberror-perl liberror-perl 0.17027-2 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgd3:amd64 libgd3 2.2.5-5.2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgvc6 libgvc6 2.40.1-6+deb10u1 install ok installed libgvpr2 libgvpr2 2.40.1-6+deb10u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-d3 libjs-d3 3.5.17-2 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-3 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.8.4-1 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1+deb10u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblab-gamut1 liblab-gamut1 2.40.1-6+deb10u1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libpathplan4 libpathplan4 2.40.1-6+deb10u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.32-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.5-minimal:amd64 libpython3.5-minimal 3.5.3-1+deb9u1 install ok installed libpython3.5-stdlib:amd64 libpython3.5-stdlib 3.5.3-1+deb9u1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.40.1-6+deb10u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-appdirs python3-appdirs 1.4.3-1 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-commonmark-bkrs python3-commonmark-bkrs 0.5.4+ds-2 install ok installed python3-configargparse python3-configargparse 0.13.0-1 install ok installed python3-datrie:amd64 python3-datrie 0.7.1-2 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-docutils python3-docutils 0.14+dfsg-4 install ok installed python3-git python3-git 2.1.11-1 install ok installed python3-gitdb python3-gitdb 2.0.5-1 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-jinja2 python3-jinja2 2.10-2 install ok installed python3-jsonschema python3-jsonschema 2.6.0-4 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-markupsafe python3-markupsafe 1.1.0-1 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-networkx python3-networkx 2.2-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-psutil python3-psutil 5.5.1-1 install ok installed python3-pygraphviz python3-pygraphviz 1.5-1 install ok installed python3-pytools python3-pytools 2019.1-1 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-1 install ok installed python3-recommonmark python3-recommonmark 0.4.0+ds-5 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-roman python3-roman 2.0.0-3 install ok installed python3-rpy2 python3-rpy2 2.9.5-1 install ok installed python3-setuptools python3-setuptools 40.8.0-1 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-smmap python3-smmap 2.0.5-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3-wrapt python3-wrapt 1.10.11-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3.5 python3.5 3.5.3-1+deb9u1 install ok installed python3.5-minimal python3.5-minimal 3.5.3-1+deb9u1 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed snakemake snakemake 5.4.0-1 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.4.3+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'remove', 'ca-certificates', 'dh-python', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sgml-base', 'sphinx-rtd-theme-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'snakemake'] 1m45.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates dh-python docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax fonts-roboto-slab git git-man graphviz libblas-common libblas3 libbsd0 libcairo2 libcdt5 libcgraph6 libcurl3-gnutls libcurl4 libdatrie1 liberror-perl libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran3 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu57 libicu63 libidn11 libjbig0 libjpeg62-turbo libjs-d3 libjs-jquery libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.4-2 libldap-common libltdl7 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre2-8-0 libperl5.28 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 lsb-base mime-support openssl perl perl-modules-5.28 python3 python3-appdirs python3-certifi python3-chardet python3-commonmark-bkrs python3-configargparse python3-datrie python3-decorator python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-jinja2 python3-jsonschema python3-lib2to3 python3-markupsafe python3-minimal python3-networkx python3-numpy python3-pkg-resources python3-psutil python3-pygraphviz python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-setuptools python3-six python3-smmap python3-urllib3 python3-wrapt python3-yaml python3.5 python3.5-minimal python3.7 python3.7-minimal r-base-core readline-common sgml-base snakemake sphinx-rtd-theme-common tzdata ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 0 newly installed, 169 to remove and 0 not upgraded. After this operation, 410 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21259 files and directories currently installed.) Removing snakemake (5.4.0-1) ... Removing python3-requests (2.21.0-1) ... Removing dh-python (3.20190308) ... Removing python3-recommonmark (0.4.0+ds-5) ... Removing python3-docutils (0.14+dfsg-4) ... Removing docutils-common (0.14+dfsg-4) ... Removing python3-rpy2 (2.9.5-1) ... Removing r-base-core (3.5.2-1) ... Removing python3-pygraphviz (1.5-1) ... Removing graphviz (2.40.1-6+deb10u1) ... Removing libgvc6 (2.40.1-6+deb10u1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libgd3:amd64 (2.2.5-5.2) ... Removing sphinx-rtd-theme-common (0.4.3+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/woff/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/svg/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/eot/font-awesome' not empty so not removed Removing fonts-lato (2.0-2) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing libjs-mathjax (2.7.4+dfsg-1) ... Removing fonts-mathjax (2.7.4+dfsg-1) ... dpkg: warning: while removing fonts-mathjax, directory '/usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf' not empty so not removed dpkg: warning: while removing fonts-mathjax, directory '/usr/share/fonts/opentype' not empty so not removed Removing fonts-roboto-slab (1.100263+20170512-1) ... dpkg: warning: while removing fonts-roboto-slab, directory '/usr/share/fonts/truetype/roboto/slab' not empty so not removed Removing python3-git (2.1.11-1) ... Removing git (1:2.20.1-2+deb10u3) ... Removing git-man (1:2.20.1-2+deb10u3) ... Removing libblas-common (3.7.0-2) ... Removing python3-pytools (2019.1-1) ... Removing python3-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libgvpr2 (2.40.1-6+deb10u1) ... Removing libcgraph6 (2.40.1-6+deb10u1) ... Removing libcdt5 (2.40.1-6+deb10u1) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing python3-datrie:amd64 (0.7.1-2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing liberror-perl (0.17027-2) ... Removing python3.5 (3.5.3-1+deb9u1) ... Removing python3.5-minimal (3.5.3-1+deb9u1) ... Removing python3-setuptools (40.8.0-1) ... Removing python3-distutils (3.7.3-1) ... Removing python3-wrapt (1.10.11-1) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-d3 (3.5.17-2) ... Removing libjs-sphinxdoc (1.8.4-1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing libjs-modernizr (2.6.2+ds1-3) ... Removing libjs-underscore (1.9.1~dfsg-1+deb10u1) ... dpkg: warning: while removing libjs-underscore, directory '/usr/share/javascript' not empty so not removed Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblab-gamut1 (2.40.1-6+deb10u1) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpathplan4 (2.40.1-6+deb10u1) ... Removing libpcre2-8-0:amd64 (10.32-5) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libthai-data (0.1.28-2) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxdot4 (2.40.1-6+deb10u1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing python3-yaml (3.13-2) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Removing python3-appdirs (1.4.3-1) ... Removing python3-certifi (2018.8.24-1) ... Removing python3-chardet (3.0.4-3) ... Removing python3-commonmark-bkrs (0.5.4+ds-2) ... Removing python3-configargparse (0.13.0-1) ... Removing python3-networkx (2.2-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-gitdb (2.0.5-1) ... Removing python3-idna (2.6-1) ... Removing python3-jinja2 (2.10-2) ... Removing python3-jsonschema (2.6.0-4) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-markupsafe (1.1.0-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-psutil (5.5.1-1) ... Removing python3-ratelimiter (1.2.0.post0-1) ... Removing python3-roman (2.0.0-3) ... Removing python3-smmap (2.0.5-1) ... Removing python3-urllib3 (1.24.1-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing tzdata (2021a-0+deb10u6) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing python3-six (1.12.0-1) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing openssl (1.1.1n-0+deb10u3) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing mime-support (3.62) ... Removing python3-minimal (3.7.3-1) ... Removing readline-common (7.0-5) ... Removing ucf (3.0038+nmu1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'remove', 'ca-certificates', 'dh-python', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sgml-base', 'sphinx-rtd-theme-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'snakemake'] 1m45.8s INFO: Running scripts post_remove 1m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_remove_exceptions'] 1m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_remove_exceptions'] 1m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--purge', 'ca-certificates', 'dh-python', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sgml-base', 'sphinx-rtd-theme-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip'] 1m47.1s DUMP: (Reading database ... 4698 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove dh-python which isn't installed Purging configuration files for docutils-common (0.14+dfsg-4) ... Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove fonts-roboto-slab which isn't installed Purging configuration files for git (1:2.20.1-2+deb10u3) ... dpkg: warning: ignoring request to remove git-man which isn't installed Purging configuration files for graphviz (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed Purging configuration files for libgvc6 (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-modernizr which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28) ... dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpcre2-8-0 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.5-minimal:amd64 (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove libpython3.5-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxdot4 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for mime-support (3.62) ... Purging configuration files for openssl (1.1.1n-0+deb10u3) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-commonmark-bkrs which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed Purging configuration files for python3-jsonschema (2.6.0-4) ... dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pygraphviz which isn't installed dpkg: warning: ignoring request to remove python3-pytools which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-recommonmark which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-rpy2 which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.5 which isn't installed Purging configuration files for python3.5-minimal (3.5.3-1+deb9u1) ... dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... Purging configuration files for r-base-core (3.5.2-1) ... Purging configuration files for readline-common (7.0-5) ... Purging configuration files for sgml-base (1.29) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zip which isn't installed 1m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--purge', 'ca-certificates', 'dh-python', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.5', 'python3.5-minimal', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sgml-base', 'sphinx-rtd-theme-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip'] 1m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--purge', 'snakemake'] 1m47.2s DUMP: dpkg: warning: ignoring request to remove snakemake which isn't installed 1m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--purge', 'snakemake'] 1m47.2s INFO: Running scripts post_purge 1m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_purge_exceptions'] 1m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_purge_exceptions'] 1m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--purge', '--pending'] 1m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--purge', '--pending'] 1m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--remove', '--pending'] 1m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg', '--remove', '--pending'] 1m47.2s INFO: Running scripts post_test 1m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_test_exceptions'] 1m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'tmp/scripts/post_test_exceptions'] 1m47.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m47.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg-divert', '--list'] 1m47.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'dpkg-divert', '--list'] 1m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'clean'] 1m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y', 'apt-get', 'clean'] 1m47.5s DEBUG: Recording chroot state 1m48.1s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-roboto-slab, fonts-mathjax, fonts-font-awesome, fonts-lato, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/eot/ owned by: fonts-font-awesome /usr/share/fonts/eot/.uuid not owned /usr/share/fonts/eot/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/eot/font-awesome/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/svg/ owned by: fonts-font-awesome /usr/share/fonts/svg/.uuid not owned /usr/share/fonts/svg/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/svg/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-roboto-slab, fonts-font-awesome, fonts-lato, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/roboto/ owned by: fonts-roboto-slab /usr/share/fonts/truetype/roboto/.uuid not owned /usr/share/fonts/truetype/roboto/slab/ owned by: fonts-roboto-slab /usr/share/fonts/truetype/roboto/slab/.uuid not owned /usr/share/fonts/woff/ owned by: fonts-font-awesome /usr/share/fonts/woff/.uuid not owned /usr/share/fonts/woff/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/woff/font-awesome/.uuid not owned /usr/share/javascript/ owned by: libjs-d3, libjs-sphinxdoc, libjs-underscore, libjs-modernizr, libjs-mathjax, libjs-jquery, fonts-mathjax, fonts-font-awesome /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned 1m48.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/shm'] 1m48.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/shm'] 1m48.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/console'] 1m48.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/console'] 1m48.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/ptmx'] 1m48.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/ptmx'] 1m48.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/pts'] 1m48.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/dev/pts'] 1m48.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/proc'] 1m48.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y/proc'] 1m48.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m48.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6zd81d6y'] 1m48.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6zd81d6y 1m48.6s INFO: PASS: Upgrading between Debian distributions. 1m48.6s INFO: PASS: All tests. 1m48.6s INFO: piuparts run ends. ret=0 End: 2022-12-18 10:50:50 GMT