Start: 2023-04-18 05:14:32 GMT [stretch] Package: hmmer2-pvm Source: hmmer2 Version: 2.3.2-13 Installed-Size: 833 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libpvm3, pvm Suggests: hmmer2-doc (>= 2.3.2-13) Description: HMMER programs with PVM (Parallel Virtual Machine) support Homepage: http://hmmer.janelia.org/ Description-md5: 45362c53c5467874f3923bd80d5ca746 Section: science Priority: optional Filename: pool/main/h/hmmer2/hmmer2-pvm_2.3.2-13_amd64.deb Size: 154074 MD5sum: 39127a3aac95d8039b5a7740ce71bb2f SHA256: 68ad5f3d71734b492b2bbfc232b800a9821422cdf9d7000401a76e590c0cdc92 [stretch-backports] Package: hmmer2-pvm Source: hmmer2 Version: 2.3.2+dfsg-6~bpo9+1 Installed-Size: 520 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.7), libpvm3, libsquid1, pvm Suggests: hmmer2-doc (>= 2.3.2+dfsg-6~bpo9+1) Description: HMMER programs with PVM (Parallel Virtual Machine) support Homepage: http://hmmer.janelia.org/ Description-md5: 45362c53c5467874f3923bd80d5ca746 Section: science Priority: optional Filename: pool/main/h/hmmer2/hmmer2-pvm_2.3.2+dfsg-6~bpo9+1_amd64.deb Size: 97002 MD5sum: 9c3d80fac5d67857b2323b9bab12a5a0 SHA256: 70d45721e364eb49a4a705d4a01fa2acf364f764e02c4c06d4f9504f8deac80f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-backports -B /srv/piuparts.debian.org/slave/refchroot/stretch2bpo/reference-chroot-metadata.dat --apt 'hmmer2-pvm=2.3.2+dfsg-6~bpo9+1' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-backports -B /srv/piuparts.debian.org/slave/refchroot/stretch2bpo/reference-chroot-metadata.dat --apt 'hmmer2-pvm=2.3.2+dfsg-6~bpo9+1' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpwifmv3t3 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpwifmv3t3 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpwifmv3t3/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'update'] 0m2.7s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'update'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2bpo/reference-chroot-metadata.dat 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s INFO: Running scripts pre_test 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'show', '--no-all-versions', 'hmmer2-pvm'] 0m4.8s DUMP: Package: hmmer2-pvm Source: hmmer2 Version: 2.3.2-13 Installed-Size: 833 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libpvm3, pvm Suggests: hmmer2-doc (>= 2.3.2-13) Description-en: HMMER programs with PVM (Parallel Virtual Machine) support HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains HMMER programs compiled with PVM support. Description-md5: 45362c53c5467874f3923bd80d5ca746 Homepage: http://hmmer.janelia.org/ Section: science Priority: optional Filename: pool/main/h/hmmer2/hmmer2-pvm_2.3.2-13_amd64.deb Size: 154074 MD5sum: 39127a3aac95d8039b5a7740ce71bb2f SHA256: 68ad5f3d71734b492b2bbfc232b800a9821422cdf9d7000401a76e590c0cdc92 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'show', '--no-all-versions', 'hmmer2-pvm'] 0m4.8s INFO: apt-cache knows about the following packages: hmmer2-pvm 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy'] 0m4.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy', 'hmmer2-pvm'] 0m4.9s DUMP: hmmer2-pvm: Installed: (none) Candidate: 2.3.2-13 Version table: 2.3.2-13 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy', 'hmmer2-pvm'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-y', 'install', 'hmmer2-pvm'] 0m8.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libbsd0 libedit2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libncurses5 libpvm3 libssl1.0.2 openssh-client pvm Suggested packages: hmmer2-doc krb5-doc krb5-user keychain libpam-ssh monkeysphere ssh-askpass Recommended packages: krb5-locales libgpm2 xauth The following NEW packages will be installed: hmmer2-pvm libbsd0 libedit2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libncurses5 libpvm3 libssl1.0.2 openssh-client pvm 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 3416 kB of archives. After this operation, 12.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 openssh-client amd64 1:7.4p1-10+deb9u7 [780 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libpvm3 amd64 3.4.6-1+b2 [89.6 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 pvm amd64 3.4.6-1+b2 [167 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 hmmer2-pvm amd64 2.3.2-13 [154 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3416 kB in 1s (2204 kB/s) Selecting previously unselected package libssl1.0.2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-libssl1.0.2_1.0.2u-1~deb9u1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20160903-3_amd64.deb ... Unpacking libedit2:amd64 (3.1-20160903-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../04-libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.15-1+deb9u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../07-libkrb5-3_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../08-libgssapi-krb5-2_1.15-1+deb9u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../09-openssh-client_1%3a7.4p1-10+deb9u7_amd64.deb ... Unpacking openssh-client (1:7.4p1-10+deb9u7) ... Selecting previously unselected package libpvm3:amd64. Preparing to unpack .../10-libpvm3_3.4.6-1+b2_amd64.deb ... Unpacking libpvm3:amd64 (3.4.6-1+b2) ... Selecting previously unselected package pvm. Preparing to unpack .../11-pvm_3.4.6-1+b2_amd64.deb ... Unpacking pvm (3.4.6-1+b2) ... Selecting previously unselected package hmmer2-pvm. Preparing to unpack .../12-hmmer2-pvm_2.3.2-13_amd64.deb ... Unpacking hmmer2-pvm (2.3.2-13) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libpvm3:amd64 (3.4.6-1+b2) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libedit2:amd64 (3.1-20160903-3) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up openssh-client (1:7.4p1-10+deb9u7) ... Setting up pvm (3.4.6-1+b2) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode Setting up hmmer2-pvm (2.3.2-13) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-y', 'install', 'hmmer2-pvm'] 0m8.0s INFO: Running scripts post_install 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_install_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_install_exceptions'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m8.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpwifmv3t3 to stretch-backports 0m8.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main deb http://deb.debian.org/debian/ stretch-backports main 0m8.2s INFO: Running scripts pre_distupgrade 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'update'] 0m10.5s DUMP: Get:1 http://security.debian.org stretch/updates InRelease [59.1 kB] Ign:2 http://deb.debian.org/debian stretch InRelease Get:3 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:4 http://deb.debian.org/debian stretch-backports InRelease [78.5 kB] Hit:5 http://deb.debian.org/debian stretch Release Get:6 http://security.debian.org stretch/updates/main Translation-en [368 kB] Get:8 http://deb.debian.org/debian stretch-backports/main amd64 Packages [612 kB] Get:9 http://deb.debian.org/debian stretch-backports/main Translation-en [467 kB] Fetched 2367 kB in 1s (2095 kB/s) Reading package lists... 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'update'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-yf', 'dist-upgrade'] 0m14.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt debian-archive-keyring dpkg e2fslibs e2fsprogs gzip libapt-pkg5.0 libbsd0 libcomerr2 libgcrypt20 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libss2 libssl1.0.2 libsystemd0 libudev1 login passwd tar zlib1g 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.6 MB of archives. After this operation, 48.1 kB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:11 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:12 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:13 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:14 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:16 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:17 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] Get:19 http://security.debian.org stretch/updates/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u7 [1305 kB] Get:20 http://security.debian.org stretch/updates/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u3 [155 kB] Get:21 http://security.debian.org stretch/updates/main amd64 libkrb5-3 amd64 1.15-1+deb9u3 [312 kB] Get:22 http://security.debian.org stretch/updates/main amd64 libkrb5support0 amd64 1.15-1+deb9u3 [62.3 kB] Get:23 http://security.debian.org stretch/updates/main amd64 libk5crypto3 amd64 1.15-1+deb9u3 [120 kB] Get:24 http://security.debian.org stretch/updates/main amd64 libbsd0 amd64 0.8.3-1+deb9u1 [82.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.6 MB in 0s (50.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1+deb9u1_amd64.deb ... Unpacking tar (1.29b-1.1+deb9u1) over (1.29b-1.1) ... Setting up tar (1.29b-1.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.26_amd64.deb ... Unpacking dpkg (1.18.26) over (1.18.25) ... Setting up dpkg (1.18.26) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fslibs:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fslibs:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fsprogs (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../gzip_1.6-5+deb9u1_amd64.deb ... Unpacking gzip (1.6-5+deb9u1) over (1.6-5+b1) ... Setting up gzip (1.6-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4601 files and directories currently installed.) Preparing to unpack .../login_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking login (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up login (1:4.4-4.1+deb9u1) ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4601 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5+deb9u2_all.deb ... Unpacking debian-archive-keyring (2017.5+deb9u2) over (2017.5+deb9u1) ... Setting up debian-archive-keyring (2017.5+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4604 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+deb9u1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+deb9u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (0.0~r131-2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4603 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.2-1.2+deb9u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.2-1.2+deb9u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.2-1.2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4.11_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.11) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.11_amd64.deb ... Unpacking apt (1.4.11) over (1.4.10) ... Setting up apt (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u14_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking passwd (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up passwd (1:4.4-4.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u14_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libudev1:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u4) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../0-libssl1.0.2_1.0.2u-1~deb9u7_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u7) over (1.0.2u-1~deb9u1) ... Preparing to unpack .../1-libgssapi-krb5-2_1.15-1+deb9u3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../2-libkrb5-3_1.15-1+deb9u3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../3-libkrb5support0_1.15-1+deb9u3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../4-libk5crypto3_1.15-1+deb9u3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../5-libbsd0_0.8.3-1+deb9u1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1+deb9u1) over (0.8.3-1) ... Setting up libbsd0:amd64 (0.8.3-1+deb9u1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u3) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u3) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u3) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-yf', 'dist-upgrade'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.3s DUMP: 46096da5bf28ec6e6c755045e954a64e - 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'show', '--no-all-versions', 'hmmer2-pvm'] 0m15.5s DUMP: Package: hmmer2-pvm Source: hmmer2 Version: 2.3.2-13 Installed-Size: 833 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libpvm3, pvm Suggests: hmmer2-doc (>= 2.3.2-13) Description-en: HMMER programs with PVM (Parallel Virtual Machine) support HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains HMMER programs compiled with PVM support. Description-md5: 45362c53c5467874f3923bd80d5ca746 Homepage: http://hmmer.janelia.org/ Section: science Priority: optional Filename: pool/main/h/hmmer2/hmmer2-pvm_2.3.2-13_amd64.deb Size: 154074 MD5sum: 39127a3aac95d8039b5a7740ce71bb2f SHA256: 68ad5f3d71734b492b2bbfc232b800a9821422cdf9d7000401a76e590c0cdc92 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'show', '--no-all-versions', 'hmmer2-pvm'] 0m15.5s INFO: apt-cache knows about the following packages: hmmer2-pvm 0m15.5s INFO: Running scripts pre_install 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy'] 0m15.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages release o=Debian Backports,a=stretch-backports,n=stretch-backports,l=Debian Backports,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy', 'hmmer2-pvm'] 0m15.7s DUMP: hmmer2-pvm: Installed: 2.3.2-13 Candidate: 2.3.2-13 Version table: 2.3.2+dfsg-6~bpo9+1 100 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages *** 2.3.2-13 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy', 'hmmer2-pvm'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'hmmer2-pvm'] 0m17.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libsquid1 Suggested packages: hmmer2-doc biosquid The following NEW packages will be installed: libsquid1 The following packages will be upgraded: hmmer2-pvm 1 upgraded, 1 newly installed, 0 to remove and 10 not upgraded. Need to get 173 kB of archives. After this operation, 131 kB disk space will be freed. Get:1 http://deb.debian.org/debian stretch-backports/main amd64 libsquid1 amd64 1.9g+cvs20050121-11~bpo9+1 [75.6 kB] Get:2 http://deb.debian.org/debian stretch-backports/main amd64 hmmer2-pvm amd64 2.3.2+dfsg-6~bpo9+1 [97.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 173 kB in 0s (268 kB/s) Selecting previously unselected package libsquid1. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4602 files and directories currently installed.) Preparing to unpack .../libsquid1_1.9g+cvs20050121-11~bpo9+1_amd64.deb ... Unpacking libsquid1 (1.9g+cvs20050121-11~bpo9+1) ... Preparing to unpack .../hmmer2-pvm_2.3.2+dfsg-6~bpo9+1_amd64.deb ... Unpacking hmmer2-pvm (2.3.2+dfsg-6~bpo9+1) over (2.3.2-13) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libsquid1 (1.9g+cvs20050121-11~bpo9+1) ... Setting up hmmer2-pvm (2.3.2+dfsg-6~bpo9+1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'hmmer2-pvm'] 0m17.3s INFO: Running scripts post_install 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_install_exceptions'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_install_exceptions'] 0m17.3s INFO: Running scripts post_distupgrade 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m17.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m17.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m18.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m18.0s INFO: Running scripts pre_install 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_database-server'] 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_database-server'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_exceptions'] 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_exceptions'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_extras'] 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_extras'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy'] 0m18.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages release o=Debian Backports,a=stretch-backports,n=stretch-backports,l=Debian Backports,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy', 'hmmer2-pvm'] 0m18.2s DUMP: hmmer2-pvm: Installed: 2.3.2+dfsg-6~bpo9+1 Candidate: 2.3.2+dfsg-6~bpo9+1 Version table: *** 2.3.2+dfsg-6~bpo9+1 100 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages 100 /var/lib/dpkg/status 2.3.2-13 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-cache', 'policy', 'hmmer2-pvm'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'hmmer2-pvm=2.3.2+dfsg-6~bpo9+1'] 0m18.6s DUMP: Reading package lists... Building dependency tree... Reading state information... hmmer2-pvm is already the newest version (2.3.2+dfsg-6~bpo9+1). 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'hmmer2-pvm=2.3.2+dfsg-6~bpo9+1'] 0m18.6s INFO: Running scripts post_install 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_install_exceptions'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_install_exceptions'] 0m18.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m18.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m19.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', '-ac', '--ignore-obsolete'] 0m19.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', '-ac', '--ignore-obsolete'] 0m19.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.8s DUMP: 0.15.6 0m19.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.8s INFO: Running adequate version 0.15.6 now. 0m19.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'hmmer2-pvm'] 0m19.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'hmmer2-pvm'] 0m19.9s INFO: Running scripts pre_remove 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/pre_remove_exceptions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.1s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.11 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hmmer2-pvm hmmer2-pvm 2.3.2+dfsg-6~bpo9+1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libedit2:amd64 libedit2 3.1-20160903-3 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u3 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u3 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u3 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u3 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpvm3:amd64 libpvm3 3.4.6-1+b2 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsquid1 libsquid1 1.9g+cvs20050121-11~bpo9+1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u7 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed openssh-client openssh-client 1:7.4p1-10+deb9u7 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed pvm pvm 3.4.6-1+b2 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'remove', 'libbsd0:amd64', 'libedit2:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libncurses5:amd64', 'libpvm3:amd64', 'libsquid1', 'libssl1.0.2:amd64', 'openssh-client', 'pvm', 'hmmer2-pvm'] 0m21.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: hmmer2-pvm libbsd0 libedit2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libncurses5 libpvm3 libsquid1 libssl1.0.2 openssh-client pvm 0 upgraded, 0 newly installed, 14 to remove and 0 not upgraded. After this operation, 12.0 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4607 files and directories currently installed.) Removing hmmer2-pvm (2.3.2+dfsg-6~bpo9+1) ... Removing pvm (3.4.6-1+b2) ... Removing openssh-client (1:7.4p1-10+deb9u7) ... Removing libedit2:amd64 (3.1-20160903-3) ... Removing libbsd0:amd64 (0.8.3-1+deb9u1) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Removing libkrb5-3:amd64 (1.15-1+deb9u3) ... Removing libk5crypto3:amd64 (1.15-1+deb9u3) ... Removing libkrb5support0:amd64 (1.15-1+deb9u3) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Removing libsquid1 (1.9g+cvs20050121-11~bpo9+1) ... Removing libpvm3:amd64 (3.4.6-1+b2) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'remove', 'libbsd0:amd64', 'libedit2:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libncurses5:amd64', 'libpvm3:amd64', 'libsquid1', 'libssl1.0.2:amd64', 'openssh-client', 'pvm', 'hmmer2-pvm'] 0m21.9s INFO: Running scripts post_remove 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_remove_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_remove_exceptions'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--purge', 'libbsd0:amd64', 'libedit2:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libncurses5:amd64', 'libpvm3:amd64', 'libsquid1', 'libssl1.0.2:amd64', 'openssh-client', 'pvm'] 0m22.1s DUMP: dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed (Reading database ... 4417 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libpvm3 which isn't installed dpkg: warning: ignoring request to remove libsquid1 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u7) ... Purging configuration files for openssh-client (1:7.4p1-10+deb9u7) ... dpkg: warning: ignoring request to remove pvm which isn't installed 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--purge', 'libbsd0:amd64', 'libedit2:amd64', 'libgssapi-krb5-2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libncurses5:amd64', 'libpvm3:amd64', 'libsquid1', 'libssl1.0.2:amd64', 'openssh-client', 'pvm'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--purge', 'hmmer2-pvm'] 0m22.2s DUMP: dpkg: warning: ignoring request to remove hmmer2-pvm which isn't installed 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--purge', 'hmmer2-pvm'] 0m22.2s INFO: Running scripts post_purge 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_purge_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_purge_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--purge', '--pending'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--purge', '--pending'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--remove', '--pending'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg', '--remove', '--pending'] 0m22.2s INFO: Running scripts post_test 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_test_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'tmp/scripts/post_test_exceptions'] 0m22.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m22.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg-divert', '--list'] 0m22.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'dpkg-divert', '--list'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'clean'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3', 'apt-get', 'clean'] 0m22.6s DEBUG: Recording chroot state 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/shm'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/shm'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/console'] 0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/console'] 0m23.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/ptmx'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/ptmx'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/pts'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/dev/pts'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/proc'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3/proc'] 0m23.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m23.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwifmv3t3'] 0m23.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpwifmv3t3 0m23.7s INFO: PASS: Upgrading between Debian distributions. 0m23.7s INFO: PASS: All tests. 0m23.7s INFO: piuparts run ends. ret=0 End: 2023-04-18 05:14:56 GMT