Start: 2023-04-14 04:08:30 GMT [stretch] [stretch-backports] Package: unicycler Version: 0.4.7+dfsg-1~bpo9+1 Installed-Size: 3360 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), python3-setuptools, default-jre, bowtie2, ncbi-blast+, pilon, racon, samtools, spades Recommends: unicycler-data Description: hybrid assembly pipeline for bacterial genomes Homepage: https://github.com/rrwick/Unicycler Description-md5: 0f68c8d94a4296faee946873e441867a Section: science Priority: optional Filename: pool/main/u/unicycler/unicycler_0.4.7+dfsg-1~bpo9+1_amd64.deb Size: 865682 MD5sum: 3dc26b733eea1d5ea5a4270c417a8dcd SHA256: 51bce24fb025d6122af70e9fec1e4fee2334ecf648753d1aea33f6636ae13a13 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-backports -B /srv/piuparts.debian.org/slave/refchroot/stretch2bpo/reference-chroot-metadata.dat --apt 'unicycler=0.4.7+dfsg-1~bpo9+1' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-backports -B /srv/piuparts.debian.org/slave/refchroot/stretch2bpo/reference-chroot-metadata.dat --apt 'unicycler=0.4.7+dfsg-1~bpo9+1' 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzi5jrg3h 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzi5jrg3h 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzi5jrg3h/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'update'] 0m2.5s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s INFO: Running scripts post_setup 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2bpo/reference-chroot-metadata.dat 0m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m4.2s INFO: Running scripts is_testable 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s INFO: Running scripts pre_test 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 0m4.5s DUMP: E: No packages found 0m4.5s DEBUG: Command failed (status=100), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 0m4.5s INFO: apt-cache does not know about any of the requested packages 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m4.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpzi5jrg3h to stretch-backports 0m4.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main deb http://deb.debian.org/debian/ stretch-backports main 0m4.8s INFO: Running scripts pre_distupgrade 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'update'] 0m6.4s DUMP: Get:1 http://security.debian.org stretch/updates InRelease [59.1 kB] Ign:2 http://deb.debian.org/debian stretch InRelease Get:3 http://deb.debian.org/debian stretch-backports InRelease [78.5 kB] Hit:4 http://deb.debian.org/debian stretch Release Get:5 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:6 http://security.debian.org stretch/updates/main Translation-en [368 kB] Get:7 http://deb.debian.org/debian stretch-backports/main amd64 Packages [612 kB] Get:8 http://deb.debian.org/debian stretch-backports/main Translation-en [467 kB] Fetched 2367 kB in 0s (3248 kB/s) Reading package lists... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'update'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-yf', 'dist-upgrade'] 0m9.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt debian-archive-keyring dpkg e2fslibs e2fsprogs gzip libapt-pkg5.0 libcomerr2 libgcrypt20 liblz4-1 liblzma5 libss2 libsystemd0 libudev1 login passwd tar zlib1g 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9594 kB of archives. After this operation, 50.2 kB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:11 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:12 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:13 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:14 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:16 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:17 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9594 kB in 0s (78.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1+deb9u1_amd64.deb ... Unpacking tar (1.29b-1.1+deb9u1) over (1.29b-1.1) ... Setting up tar (1.29b-1.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.26_amd64.deb ... Unpacking dpkg (1.18.26) over (1.18.25) ... Setting up dpkg (1.18.26) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fslibs:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fslibs:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fsprogs (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../gzip_1.6-5+deb9u1_amd64.deb ... Unpacking gzip (1.6-5+deb9u1) over (1.6-5+b1) ... Setting up gzip (1.6-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4410 files and directories currently installed.) Preparing to unpack .../login_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking login (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up login (1:4.4-4.1+deb9u1) ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4410 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5+deb9u2_all.deb ... Unpacking debian-archive-keyring (2017.5+deb9u2) over (2017.5+deb9u1) ... Setting up debian-archive-keyring (2017.5+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4413 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+deb9u1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+deb9u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (0.0~r131-2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4412 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.2-1.2+deb9u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.2-1.2+deb9u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.2-1.2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4.11_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.11) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.11_amd64.deb ... Unpacking apt (1.4.11) over (1.4.10) ... Setting up apt (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u14_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking passwd (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up passwd (1:4.4-4.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u14_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libudev1:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u4) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-yf', 'dist-upgrade'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.9s DUMP: 46096da5bf28ec6e6c755045e954a64e - 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 0m10.2s DUMP: Package: unicycler Version: 0.4.7+dfsg-1~bpo9+1 Installed-Size: 3360 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), python3-setuptools, default-jre, bowtie2, ncbi-blast+, pilon, racon, samtools, spades Recommends: unicycler-data Description-en: hybrid assembly pipeline for bacterial genomes Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly. Description-md5: 0f68c8d94a4296faee946873e441867a Homepage: https://github.com/rrwick/Unicycler Section: science Priority: optional Filename: pool/main/u/unicycler/unicycler_0.4.7+dfsg-1~bpo9+1_amd64.deb Size: 865682 MD5sum: 3dc26b733eea1d5ea5a4270c417a8dcd SHA256: 51bce24fb025d6122af70e9fec1e4fee2334ecf648753d1aea33f6636ae13a13 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'show', '--no-all-versions', 'unicycler'] 0m10.2s INFO: apt-cache knows about the following packages: unicycler 0m10.2s INFO: Running scripts pre_install 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_extras'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_extras'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy'] 0m10.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages release o=Debian Backports,a=stretch-backports,n=stretch-backports,l=Debian Backports,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy', 'unicycler'] 0m10.3s DUMP: unicycler: Installed: (none) Candidate: 0.4.7+dfsg-1~bpo9+1 Version table: 0.4.7+dfsg-1~bpo9+1 100 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy', 'unicycler'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'unicycler'] 0m48.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme bamtools bowtie2 bwa ca-certificates ca-certificates-java dconf-gsettings-backend dconf-service default-jre default-jre-headless dh-python fontconfig fontconfig-config fonts-dejavu-core glib-networking glib-networking-common glib-networking-services gnome-icon-theme gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme java-common java-wrappers libapache-pom-java libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.4.0 libbsd0 libcairo-gobject2 libcairo2 libcap2 libcolord2 libcommons-compress-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libedlib0 libegl-mesa0 libegl1 libelf1 libepoxy0 libexpat1 libffi6 libflac8 libfontconfig1 libfontenc1 libfreetype6 libgbm1 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-common libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhat-trie0 libhogweed4 libhts2 libhtsjdk-java libice6 libicu57 libidn11 libidn2-0 libjbig0 libjemalloc1 libjpeg62-turbo libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm6.0 libmpdec2 libncurses5 libnettle6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk1 libnlopt0 libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libperl5.24 libpixman-1-0 libpng16-16 libproxy1v5 libpsl5 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 librest-0.7-0 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsndfile1 libsoup-gnome2.4-1 libsoup2.4-1 libspoa1.1.3 libsqlite3-0 libssh2-1 libssl1.1 libssw0 libtasn1-6 libtbb2 libthai-data libthai0 libthread-pool0 libtiff5 libunistring0 libvorbis0a libvorbisenc2 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-egl1-mesa libwayland-server0 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 lsb-base mime-support ncbi-blast+ ncbi-data openjdk-8-jre openjdk-8-jre-headless openssl perl perl-modules-5.24 pilon python python-joblib python-minimal python-yaml python2.7 python2.7-minimal python3 python3-minimal python3-pkg-resources python3-setuptools python3.5 python3.5-minimal racon readline-common samtools scala-library shared-mime-info spades ucf unzip x11-common x11-utils xkb-data Suggested packages: bowtie2-examples libdpkg-perl dpkg-dev libasound2-plugins alsa-utils colord libcommons-jexl2-java-doc libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common gnutls-bin krb5-doc krb5-user gvfs picard-tools liblcms2-utils pciutils pcscd pulseaudio librsvg2-bin lm-sensors libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make python-doc python-tk python2.7-doc binutils binfmt-support python3-doc python3-tk python3-venv python-setuptools-doc python3.5-venv python3.5-doc readline-doc zip mesa-utils Recommended packages: at-spi2-core dbus libglib2.0-data xdg-user-dirs libgtk-3-bin libgail-common libgtk2.0-bin krb5-locales libgpm2 publicsuffix libsasl2-modules tcpd xml-core bzip2 file xz-utils fonts-dejavu-extra netbase rename python-numpy python-pytest python-simplejson cwltool unicycler-data The following NEW packages will be installed: adwaita-icon-theme bamtools bowtie2 bwa ca-certificates ca-certificates-java dconf-gsettings-backend dconf-service default-jre default-jre-headless dh-python fontconfig fontconfig-config fonts-dejavu-core glib-networking glib-networking-common glib-networking-services gnome-icon-theme gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme java-common java-wrappers libapache-pom-java libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.4.0 libbsd0 libcairo-gobject2 libcairo2 libcap2 libcolord2 libcommons-compress-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libedlib0 libegl-mesa0 libegl1 libelf1 libepoxy0 libexpat1 libffi6 libflac8 libfontconfig1 libfontenc1 libfreetype6 libgbm1 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-common libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhat-trie0 libhogweed4 libhts2 libhtsjdk-java libice6 libicu57 libidn11 libidn2-0 libjbig0 libjemalloc1 libjpeg62-turbo libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm6.0 libmpdec2 libncurses5 libnettle6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk1 libnlopt0 libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libperl5.24 libpixman-1-0 libpng16-16 libproxy1v5 libpsl5 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 librest-0.7-0 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsndfile1 libsoup-gnome2.4-1 libsoup2.4-1 libspoa1.1.3 libsqlite3-0 libssh2-1 libssl1.1 libssw0 libtasn1-6 libtbb2 libthai-data libthai0 libthread-pool0 libtiff5 libunistring0 libvorbis0a libvorbisenc2 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-egl1-mesa libwayland-server0 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 lsb-base mime-support ncbi-blast+ ncbi-data openjdk-8-jre openjdk-8-jre-headless openssl perl perl-modules-5.24 pilon python python-joblib python-minimal python-yaml python2.7 python2.7-minimal python3 python3-minimal python3-pkg-resources python3-setuptools python3.5 python3.5-minimal racon readline-common samtools scala-library shared-mime-info spades ucf unicycler unzip x11-common x11-utils xkb-data 0 upgraded, 254 newly installed, 0 to remove and 10 not upgraded. Need to get 172 MB of archives. After this operation, 752 MB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u6 [390 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:3 http://security.debian.org stretch/updates/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u6 [1382 kB] Get:4 http://security.debian.org stretch/updates/main amd64 libexpat1 amd64 2.2.0-2+deb9u5 [84.7 kB] Get:5 http://security.debian.org stretch/updates/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u6 [1360 kB] Get:6 http://security.debian.org stretch/updates/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u6 [1898 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:9 http://security.debian.org stretch/updates/main amd64 python2.7 amd64 2.7.13-2+deb9u6 [286 kB] Get:10 http://security.debian.org stretch/updates/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u2 [438 kB] Get:11 http://security.debian.org stretch/updates/main amd64 libpython3.5-minimal amd64 3.5.3-1+deb9u5 [574 kB] Get:12 http://security.debian.org stretch/updates/main amd64 python3.5-minimal amd64 3.5.3-1+deb9u5 [1692 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libpython3.5-stdlib amd64 3.5.3-1+deb9u5 [2167 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:20 http://deb.debian.org/debian stretch-backports/main amd64 libsqlite3-0 amd64 3.27.2-3~bpo9+1 [638 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:25 http://security.debian.org stretch/updates/main amd64 python3.5 amd64 3.5.3-1+deb9u5 [231 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:27 http://security.debian.org stretch/updates/main amd64 libbsd0 amd64 0.8.3-1+deb9u1 [82.9 kB] Get:28 http://security.debian.org stretch/updates/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1+deb9u1 [253 kB] Get:29 http://security.debian.org stretch/updates/main amd64 libnettle6 amd64 3.3-1+deb9u1 [192 kB] Get:30 http://security.debian.org stretch/updates/main amd64 libhogweed4 amd64 3.3-1+deb9u1 [136 kB] Get:31 http://security.debian.org stretch/updates/main amd64 libp11-kit0 amd64 0.23.3-2+deb9u1 [112 kB] Get:32 http://security.debian.org stretch/updates/main amd64 libgnutls30 amd64 3.5.8-5+deb9u6 [897 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:35 http://security.debian.org stretch/updates/main amd64 libkrb5support0 amd64 1.15-1+deb9u3 [62.3 kB] Get:36 http://security.debian.org stretch/updates/main amd64 libk5crypto3 amd64 1.15-1+deb9u3 [120 kB] Get:37 http://security.debian.org stretch/updates/main amd64 libkrb5-3 amd64 1.15-1+deb9u3 [312 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:39 http://security.debian.org stretch/updates/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u3 [155 kB] Get:40 http://security.debian.org stretch/updates/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u2 [68.5 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libogg0 amd64 1.3.2-1 [19.9 kB] Get:42 http://security.debian.org stretch/updates/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u2 [105 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 python3-minimal amd64 3.5.3-1 [35.3 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:46 http://security.debian.org stretch/updates/main amd64 libicu57 amd64 57.1-6+deb9u5 [7700 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libpython3-stdlib amd64 3.5.3-1 [18.6 kB] Get:48 http://deb.debian.org/debian stretch-backports/main amd64 dh-python all 3.20180723~bpo9+1 [95.5 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 python3 amd64 3.5.3-1 [21.6 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libcap2 amd64 1:2.25-1 [16.8 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:57 http://deb.debian.org/debian stretch-backports/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u2~bpo9+1 [89.8 kB] Get:58 http://deb.debian.org/debian stretch-backports/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u2~bpo9+1 [223 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 libwrap0 amd64 7.6.q-26 [58.2 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 hicolor-icon-theme all 0.15-1 [9550 B] Get:61 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-common all 2.36.5-2+deb9u2 [311 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-0 amd64 2.36.5-2+deb9u2 [170 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 gtk-update-icon-cache amd64 3.22.11-1 [76.6 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libcroco3 amd64 0.6.11-3 [143 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:78 http://security.debian.org stretch/updates/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u7 [920 kB] Get:79 http://security.debian.org stretch/updates/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u3 [2693 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 adwaita-icon-theme all 3.22.0-1+deb9u1 [11.5 MB] Get:85 http://security.debian.org stretch/updates/main amd64 libjpeg62-turbo amd64 1:1.5.1-2+deb9u2 [134 kB] Get:86 http://security.debian.org stretch/updates/main amd64 libtiff5 amd64 4.0.8-2+deb9u8 [239 kB] Get:87 http://security.debian.org stretch/updates/main amd64 libx11-data all 2:1.6.4-3+deb9u4 [291 kB] Get:88 http://security.debian.org stretch/updates/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u4 [748 kB] Get:89 http://security.debian.org stretch/updates/main amd64 libcairo2 amd64 1.14.8-1+deb9u1 [771 kB] Get:90 http://security.debian.org stretch/updates/main amd64 librsvg2-2 amd64 2.40.21-0+deb9u1 [108 kB] Get:91 http://security.debian.org stretch/updates/main amd64 librsvg2-common amd64 2.40.21-0+deb9u1 [16.6 kB] Get:92 http://security.debian.org stretch/updates/main amd64 openssl amd64 1.1.0l-1~deb9u6 [749 kB] Get:93 http://security.debian.org stretch/updates/main amd64 ca-certificates all 20200601~deb9u2 [168 kB] Get:94 http://security.debian.org stretch/updates/main amd64 libavahi-common-data amd64 0.6.32-2+deb9u1 [118 kB] Get:95 http://security.debian.org stretch/updates/main amd64 libavahi-common3 amd64 0.6.32-2+deb9u1 [52.3 kB] Get:96 http://security.debian.org stretch/updates/main amd64 libavahi-client3 amd64 0.6.32-2+deb9u1 [55.6 kB] Get:97 http://security.debian.org stretch/updates/main amd64 libcups2 amd64 2.2.1-8+deb9u8 [307 kB] Get:98 http://security.debian.org stretch/updates/main amd64 libnss3 amd64 2:3.26.2-1.1+deb9u5 [1244 kB] Get:99 http://security.debian.org stretch/updates/main amd64 openjdk-8-jre-headless amd64 8u332-ga-1~deb9u1 [28.1 MB] Get:100 http://deb.debian.org/debian stretch/main amd64 libbamtools2.4.0 amd64 2.4.1+dfsg-1 [190 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 bamtools amd64 2.4.1+dfsg-1 [214 kB] Get:103 http://deb.debian.org/debian stretch-backports/main amd64 bwa amd64 0.7.17-1~bpo9+1 [196 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 java-common all 0.58+deb9u1 [13.6 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libnspr4 amd64 2:4.12-6 [117 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libpcsclite1 amd64 1.8.20-1 [56.5 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 default-jre-headless amd64 2:1.8-58+deb9u1 [10.1 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 ca-certificates-java all 20170929~deb9u3 [15.1 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libdconf1 amd64 0.26.0-2+b1 [37.6 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 dconf-service amd64 0.26.0-2+b1 [34.7 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 dconf-gsettings-backend amd64 0.26.0-2+b1 [26.4 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:119 http://deb.debian.org/debian stretch-backports/main amd64 libglvnd0 amd64 1.1.0-1~bpo9+1 [50.8 kB] Get:120 http://deb.debian.org/debian stretch-backports/main amd64 libdrm-common all 2.4.95-1~bpo9+1 [13.7 kB] Get:121 http://deb.debian.org/debian stretch-backports/main amd64 libdrm2 amd64 2.4.95-1~bpo9+1 [39.7 kB] Get:122 http://deb.debian.org/debian stretch-backports/main amd64 libglapi-mesa amd64 18.2.8-2~bpo9+1 [65.2 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 libxcb-xfixes0 amd64 1.12-1 [99.6 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:132 http://deb.debian.org/debian stretch/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:133 http://deb.debian.org/debian stretch-backports/main amd64 libdrm-amdgpu1 amd64 2.4.95-1~bpo9+1 [27.2 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:135 http://deb.debian.org/debian stretch-backports/main amd64 libdrm-intel1 amd64 2.4.95-1~bpo9+1 [70.0 kB] Get:136 http://deb.debian.org/debian stretch-backports/main amd64 libdrm-nouveau2 amd64 2.4.95-1~bpo9+1 [26.0 kB] Get:137 http://deb.debian.org/debian stretch-backports/main amd64 libdrm-radeon1 amd64 2.4.95-1~bpo9+1 [31.2 kB] Get:138 http://deb.debian.org/debian stretch-backports/main amd64 libllvm6.0 amd64 1:6.0-1~bpo9+1 [14.3 MB] Get:139 http://security.debian.org stretch/updates/main amd64 libx11-xcb1 amd64 2:1.6.4-3+deb9u4 [184 kB] Get:140 http://security.debian.org stretch/updates/main amd64 libelf1 amd64 0.168-1+deb9u1 [156 kB] Get:141 http://security.debian.org stretch/updates/main amd64 libcairo-gobject2 amd64 1.14.8-1+deb9u1 [337 kB] Get:142 http://security.debian.org stretch/updates/main amd64 libproxy1v5 amd64 0.4.14-2+deb9u2 [55.8 kB] Get:143 http://security.debian.org stretch/updates/main amd64 libflac8 amd64 1.3.2-2+deb9u2 [221 kB] Get:144 http://security.debian.org stretch/updates/main amd64 libvorbis0a amd64 1.3.5-4+deb9u3 [91.5 kB] Get:145 http://security.debian.org stretch/updates/main amd64 libvorbisenc2 amd64 1.3.5-4+deb9u3 [79.3 kB] Get:146 http://security.debian.org stretch/updates/main amd64 libsndfile1 amd64 1.0.27-3+deb9u3 [248 kB] Get:147 http://security.debian.org stretch/updates/main amd64 openjdk-8-jre amd64 8u332-ga-1~deb9u1 [70.1 kB] Get:148 http://security.debian.org stretch/updates/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u2 [79.4 kB] Get:149 http://security.debian.org stretch/updates/main amd64 libssh2-1 amd64 1.7.0-1+deb9u2 [139 kB] Get:150 http://security.debian.org stretch/updates/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u16 [296 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:152 http://deb.debian.org/debian stretch-backports/main amd64 libgl1-mesa-dri amd64 18.2.8-2~bpo9+1 [6685 kB] Get:153 http://deb.debian.org/debian stretch-backports/main amd64 libglx-mesa0 amd64 18.2.8-2~bpo9+1 [177 kB] Get:154 http://deb.debian.org/debian stretch-backports/main amd64 libglx0 amd64 1.1.0-1~bpo9+1 [30.1 kB] Get:155 http://deb.debian.org/debian stretch-backports/main amd64 libgl1 amd64 1.1.0-1~bpo9+1 [93.4 kB] Get:156 http://deb.debian.org/debian stretch-backports/main amd64 libgl1-mesa-glx amd64 18.2.8-2~bpo9+1 [46.3 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-common all 2.24.31-2 [2693 kB] Get:158 http://deb.debian.org/debian stretch-backports/main amd64 libatk1.0-data all 2.30.0-2~bpo9+1 [146 kB] Get:159 http://deb.debian.org/debian stretch-backports/main amd64 libatk1.0-0 amd64 2.30.0-2~bpo9+1 [50.7 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 gnome-icon-theme all 3.12.0-2 [9890 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-0 amd64 2.24.31-2 [1800 kB] Get:164 http://deb.debian.org/debian stretch-backports/main amd64 libatspi2.0-0 amd64 2.30.0-7~bpo9+1 [64.2 kB] Get:165 http://deb.debian.org/debian stretch-backports/main amd64 libatk-bridge2.0-0 amd64 2.30.0-5~bpo9+1 [59.6 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libgtk-3-common all 3.22.11-1 [3416 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 libcolord2 amd64 1.3.3-2 [252 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libepoxy0 amd64 1.3.1-2 [176 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-common all 1.2.6-1 [166 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-0 amd64 1.2.6-1 [178 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 glib-networking-common all 2.50.0-1+deb9u1 [49.2 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 glib-networking-services amd64 2.50.0-1+deb9u1 [12.2 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 gsettings-desktop-schemas all 3.22.0-1 [473 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 glib-networking amd64 2.50.0-1+deb9u1 [57.0 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 libsoup2.4-1 amd64 2.56.0-2+deb9u2 [296 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libsoup-gnome2.4-1 amd64 2.56.0-2+deb9u2 [16.4 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 librest-0.7-0 amd64 0.8.0-2 [33.0 kB] Get:178 http://deb.debian.org/debian stretch-backports/main amd64 libwayland-client0 amd64 1.16.0-1~bpo9+1 [26.6 kB] Get:179 http://deb.debian.org/debian stretch-backports/main amd64 libwayland-cursor0 amd64 1.16.0-1~bpo9+1 [14.3 kB] Get:180 http://deb.debian.org/debian stretch-backports/main amd64 libwayland-server0 amd64 1.16.0-1~bpo9+1 [32.7 kB] Get:181 http://deb.debian.org/debian stretch-backports/main amd64 libgbm1 amd64 18.2.8-2~bpo9+1 [66.1 kB] Get:182 http://deb.debian.org/debian stretch-backports/main amd64 libegl-mesa0 amd64 18.2.8-2~bpo9+1 [129 kB] Get:183 http://deb.debian.org/debian stretch-backports/main amd64 libegl1 amd64 1.1.0-1~bpo9+1 [33.6 kB] Get:184 http://deb.debian.org/debian stretch-backports/main amd64 libwayland-egl1 amd64 1.16.0-1~bpo9+1 [8244 B] Get:185 http://deb.debian.org/debian stretch-backports/main amd64 libwayland-egl1-mesa amd64 18.2.8-2~bpo9+1 [46.3 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 xkb-data all 2.19-1+deb9u1 [650 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libxkbcommon0 amd64 0.7.1-2~deb9u1 [122 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 libgtk-3-0 amd64 3.22.11-1 [2529 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:197 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:199 http://deb.debian.org/debian stretch/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:200 http://deb.debian.org/debian stretch/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 x11-utils amd64 7.7+3+b1 [202 kB] Get:202 http://deb.debian.org/debian stretch-backports/main amd64 libatk-wrapper-java all 0.33.3-22~bpo10+1 [45.4 kB] Get:203 http://deb.debian.org/debian stretch-backports/main amd64 libatk-wrapper-java-jni amd64 0.33.3-22~bpo10+1 [39.2 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libasound2-data all 1.1.3-5 [173 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libasound2 amd64 1.1.3-5 [497 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 libgif7 amd64 5.1.4-0.4 [43.1 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libasyncns0 amd64 0.8-6 [12.5 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 libpulse0 amd64 10.0-1+deb9u1 [283 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 default-jre amd64 2:1.8-58+deb9u1 [930 B] Get:210 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 java-wrappers all 0.1.28 [10.7 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 libapache-pom-java all 10-2 [3870 B] Get:213 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:214 http://deb.debian.org/debian stretch/main amd64 libcommons-parent-java all 39-3 [9350 B] Get:215 http://deb.debian.org/debian stretch/main amd64 libcommons-compress-java all 1.13-1 [430 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 libcommons-logging-java all 1.2-1 [62.1 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 libcommons-jexl2-java all 2.1.1-3 [246 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 libcommons-lang-java all 2.6-6 [269 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:220 http://deb.debian.org/debian stretch-backports/main amd64 libidn2-0 amd64 2.0.5-1~bpo9+1 [122 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:223 http://deb.debian.org/debian stretch-backports/main amd64 libedlib0 amd64 1.2.3-3~bpo9+1 [15.2 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 libhat-trie0 amd64 0.0~git25f9e946-2 [10.7 kB] Get:226 http://deb.debian.org/debian stretch-backports/main amd64 libhts2 amd64 1.7-2~bpo9+1 [310 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 libngs-sdk1 amd64 1.3.0-2 [51.2 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 libngs-sdk-dev amd64 1.3.0-2 [92.4 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 libngs-java amd64 1.3.0-2 [71.1 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 libsnappy1v5 amd64 1.1.3-3 [51.0 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libsnappy-jni amd64 1.1.2.6-1 [6808 B] Get:232 http://deb.debian.org/debian stretch/main amd64 libsnappy-java all 1.1.2.6-1 [65.9 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 libxz-java all 1.6-1 [128 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 libhtsjdk-java all 2.8.1+dfsg-1 [1438 kB] Get:235 http://deb.debian.org/debian stretch-backports/main amd64 libnlopt0 amd64 2.4.2+dfsg-8~bpo9+1+b1 [162 kB] Get:236 http://deb.debian.org/debian stretch-backports/main amd64 libspoa1.1.3 amd64 1.1.3-2~bpo9+1 [33.4 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libssw0 amd64 1.1-1+b1 [16.5 kB] Get:238 http://deb.debian.org/debian stretch-backports/main amd64 libthread-pool0 amd64 1.0.0-1~bpo9+1 [8206 B] Get:239 http://deb.debian.org/debian stretch-backports/main amd64 libyaml-0-2 amd64 0.2.1-1~bpo9+1 [47.8 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 scala-library all 2.11.8-1 [9541 kB] Get:243 http://deb.debian.org/debian stretch-backports/main amd64 pilon all 1.22+dfsg-2~bpo9+2 [414 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 python-joblib all 0.10.3+git55-g660fe5d-1 [115 kB] Get:245 http://deb.debian.org/debian stretch/main amd64 python-yaml amd64 3.12-1 [119 kB] Get:246 http://deb.debian.org/debian stretch/main amd64 python3-pkg-resources all 33.1.1-1 [137 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 python3-setuptools all 33.1.1-1 [215 kB] Get:248 http://deb.debian.org/debian stretch-backports/main amd64 racon amd64 1.3.1-1~bpo9+1 [50.7 kB] Get:249 http://deb.debian.org/debian stretch-backports/main amd64 samtools amd64 1.7-2~bpo9+1 [409 kB] Get:250 http://deb.debian.org/debian stretch/main amd64 libjemalloc1 amd64 3.6.0-9.1 [89.8 kB] Get:251 http://deb.debian.org/debian stretch-backports/main amd64 spades amd64 3.12.0+dfsg-1~bpo9+1 [4941 kB] Get:252 http://deb.debian.org/debian stretch/main amd64 libtbb2 amd64 4.3~20150611-2 [136 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 bowtie2 amd64 2.3.0-2 [1166 kB] Get:254 http://deb.debian.org/debian stretch-backports/main amd64 unicycler amd64 0.4.7+dfsg-1~bpo9+1 [866 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 172 MB in 2s (82.1 MB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../01-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. 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Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up dconf-gsettings-backend:amd64 (0.26.0-2+b1) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up gsettings-desktop-schemas (3.22.0-1) ... Setting up libgtk-3-common (3.22.11-1) ... Setting up libatspi2.0-0:amd64 (2.30.0-7~bpo9+1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Setting up libhtsjdk-java (2.8.1+dfsg-1) ... Setting up libegl1:amd64 (1.1.0-1~bpo9+1) ... Setting up gtk-update-icon-cache (3.22.11-1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up glib-networking:amd64 (2.50.0-1+deb9u1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libwayland-egl1-mesa:amd64 (18.2.8-2~bpo9+1) ... Setting up libatk-bridge2.0-0:amd64 (2.30.0-5~bpo9+1) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libcups2:amd64 (2.2.1-8+deb9u8) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.14.8-1+deb9u1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u16) ... Setting up libcairo-gobject2:amd64 (1.14.8-1+deb9u1) ... Setting up libsoup2.4-1:amd64 (2.56.0-2+deb9u2) ... Setting up libsoup-gnome2.4-1:amd64 (2.56.0-2+deb9u2) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up librest-0.7-0:amd64 (0.8.0-2) ... Setting up libhts2:amd64 (1.7-2~bpo9+1) ... Setting up libglx-mesa0:amd64 (18.2.8-2~bpo9+1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up libpulse0:amd64 (10.0-1+deb9u1) ... Setting up samtools (1.7-2~bpo9+1) ... Setting up libglx0:amd64 (1.1.0-1~bpo9+1) ... Setting up spades (3.12.0+dfsg-1~bpo9+1) ... Setting up librsvg2-2:amd64 (2.40.21-0+deb9u1) ... Setting up librsvg2-common:amd64 (2.40.21-0+deb9u1) ... Setting up libgl1:amd64 (1.1.0-1~bpo9+1) ... Setting up adwaita-icon-theme (3.22.0-1+deb9u1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:amd64 (2.24.31-2) ... Setting up x11-utils (7.7+3+b1) ... Setting up gnome-icon-theme (3.12.0-2) ... update-alternatives: using /usr/share/icons/gnome/scalable/places/debian-swirl.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode Setting up libgtk-3-0:amd64 (3.22.11-1) ... Setting up libgl1-mesa-glx:amd64 (18.2.8-2~bpo9+1) ... Setting up libatk-wrapper-java (0.33.3-22~bpo10+1) ... Setting up libatk-wrapper-java-jni:amd64 (0.33.3-22~bpo10+1) ... Setting up openjdk-8-jre-headless:amd64 (8u332-ga-1~deb9u1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20170929~deb9u3) ... Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up python3 (3.5.3-1) ... Setting up python3-pkg-resources (33.1.1-1) ... Setting up openjdk-8-jre:amd64 (8u332-ga-1~deb9u1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up python3-setuptools (33.1.1-1) ... Setting up dh-python (3.20180723~bpo9+1) ... Setting up default-jre-headless (2:1.8-58+deb9u1) ... Setting up default-jre (2:1.8-58+deb9u1) ... Setting up pilon (1.22+dfsg-2~bpo9+2) ... Setting up unicycler (0.4.7+dfsg-1~bpo9+1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'unicycler'] 0m48.6s INFO: Running scripts post_install 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_install_exceptions'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_install_exceptions'] 0m48.6s INFO: Running scripts post_distupgrade 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m50.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m50.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m51.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m51.4s INFO: Running scripts pre_install 0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_database-server'] 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_database-server'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_exceptions'] 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_exceptions'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_extras'] 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_extras'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy'] 0m51.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages release o=Debian Backports,a=stretch-backports,n=stretch-backports,l=Debian Backports,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy', 'unicycler'] 0m51.6s DUMP: unicycler: Installed: 0.4.7+dfsg-1~bpo9+1 Candidate: 0.4.7+dfsg-1~bpo9+1 Version table: *** 0.4.7+dfsg-1~bpo9+1 100 100 http://deb.debian.org/debian stretch-backports/main amd64 Packages 100 /var/lib/dpkg/status 0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-cache', 'policy', 'unicycler'] 0m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'unicycler=0.4.7+dfsg-1~bpo9+1'] 0m51.8s DUMP: Reading package lists... Building dependency tree... Reading state information... unicycler is already the newest version (0.4.7+dfsg-1~bpo9+1). 0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded. 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', '-y', '-t', 'stretch-backports', 'install', 'unicycler=0.4.7+dfsg-1~bpo9+1'] 0m51.8s INFO: Running scripts post_install 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_install_exceptions'] 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_install_exceptions'] 0m51.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m53.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 0m54.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', '-ac', '--ignore-obsolete'] 0m57.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', '-ac', '--ignore-obsolete'] 0m57.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m57.9s DUMP: 0.15.6 0m57.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m57.9s INFO: Running adequate version 0.15.6 now. 0m57.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'unicycler'] 0m58.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'unicycler'] 0m58.1s INFO: Running scripts pre_remove 0m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_exceptions'] 1m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/pre_remove_exceptions'] 1m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m2.6s DUMP: install ok installed adduser adduser 3.115 install ok installed adwaita-icon-theme adwaita-icon-theme 3.22.0-1+deb9u1 install ok installed apt apt 1.4.11 install ok installed bamtools bamtools 2.4.1+dfsg-1 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bowtie2 bowtie2 2.3.0-2 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed bwa bwa 0.7.17-1~bpo9+1 install ok installed ca-certificates ca-certificates 20200601~deb9u2 install ok installed ca-certificates-java ca-certificates-java 20170929~deb9u3 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.26.0-2+b1 install ok installed dconf-service dconf-service 0.26.0-2+b1 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed default-jre default-jre 2:1.8-58+deb9u1 install ok installed default-jre-headless default-jre-headless 2:1.8-58+deb9u1 install ok installed dh-python dh-python 3.20180723~bpo9+1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed glib-networking:amd64 glib-networking 2.50.0-1+deb9u1 install ok installed glib-networking-common glib-networking-common 2.50.0-1+deb9u1 install ok installed glib-networking-services glib-networking-services 2.50.0-1+deb9u1 install ok installed gnome-icon-theme gnome-icon-theme 3.12.0-2 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.22.0-1 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.22.11-1 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.15-1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed java-common java-common 0.58+deb9u1 install ok installed java-wrappers java-wrappers 0.1.28 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapache-pom-java libapache-pom-java 10-2 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libasound2:amd64 libasound2 1.1.3-5 install ok installed libasound2-data libasound2-data 1.1.3-5 install ok installed libasyncns0:amd64 libasyncns0 0.8-6 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.30.0-5~bpo9+1 install ok installed libatk-wrapper-java libatk-wrapper-java 0.33.3-22~bpo10+1 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.33.3-22~bpo10+1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.30.0-2~bpo9+1 install ok installed libatk1.0-data libatk1.0-data 2.30.0-2~bpo9+1 install ok installed libatomic1:amd64 libatomic1 6.3.0-18+deb9u1 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.30.0-7~bpo9+1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.32-2+deb9u1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.32-2+deb9u1 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.32-2+deb9u1 install ok installed libbamtools2.4.0 libbamtools2.4.0 2.4.1+dfsg-1 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.14.8-1+deb9u1 install ok installed libcairo2:amd64 libcairo2 1.14.8-1+deb9u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcap2:amd64 libcap2 1:2.25-1 install ok installed libcolord2:amd64 libcolord2 1.3.3-2 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libcommons-compress-java libcommons-compress-java 1.13-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-3 install ok installed libcommons-lang-java libcommons-lang-java 2.6-6 install ok installed libcommons-logging-java libcommons-logging-java 1.2-1 install ok installed libcommons-parent-java libcommons-parent-java 39-3 install ok installed libcroco3:amd64 libcroco3 0.6.11-3 install ok installed libcups2:amd64 libcups2 2.2.1-8+deb9u8 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.52.1-5+deb9u16 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.10.32-0+deb9u1 install ok installed libdconf1:amd64 libdconf1 0.26.0-2+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.95-1~bpo9+1 install ok installed libdrm-common libdrm-common 2.4.95-1~bpo9+1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.95-1~bpo9+1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.95-1~bpo9+1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.95-1~bpo9+1 install ok installed libdrm2:amd64 libdrm2 2.4.95-1~bpo9+1 install ok installed libedit2:amd64 libedit2 3.1-20160903-3 install ok installed libedlib0 libedlib0 1.2.3-3~bpo9+1 install ok installed libegl-mesa0:amd64 libegl-mesa0 18.2.8-2~bpo9+1 install ok installed libegl1:amd64 libegl1 1.1.0-1~bpo9+1 install ok installed libelf1:amd64 libelf1 0.168-1+deb9u1 install ok installed libepoxy0:amd64 libepoxy0 1.3.1-2 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u5 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libflac8:amd64 libflac8 1.3.2-2+deb9u2 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.3-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u2 install ok installed libgbm1:amd64 libgbm1 18.2.8-2~bpo9+1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.36.5-2+deb9u2 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.36.5-2+deb9u2 install ok installed libgif7:amd64 libgif7 5.1.4-0.4 install ok installed libgl1:amd64 libgl1 1.1.0-1~bpo9+1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 18.2.8-2~bpo9+1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 18.2.8-2~bpo9+1 install ok installed libglapi-mesa:amd64 libglapi-mesa 18.2.8-2~bpo9+1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u3 install ok installed libglvnd0:amd64 libglvnd0 1.1.0-1~bpo9+1 install ok installed libglx-mesa0:amd64 libglx-mesa0 18.2.8-2~bpo9+1 install ok installed libglx0:amd64 libglx0 1.1.0-1~bpo9+1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1+deb9u1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u6 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u3 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.22.11-1 install ok installed libgtk-3-common libgtk-3-common 3.22.11-1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.31-2 install ok installed libgtk2.0-common libgtk2.0-common 2.24.31-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libhat-trie0:amd64 libhat-trie0 0.0~git25f9e946-2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+deb9u1 install ok installed libhts2:amd64 libhts2 1.7-2~bpo9+1 install ok installed libhtsjdk-java libhtsjdk-java 2.8.1+dfsg-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u5 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1~bpo9+1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjemalloc1 libjemalloc1 3.6.0-9.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2+deb9u2 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.2.6-1 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.2.6-1 install ok installed libjsoncpp1:amd64 libjsoncpp1 1.7.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u3 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u3 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u3 install ok installed liblcms2-2:amd64 liblcms2-2 2.8-4+deb9u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u2~bpo9+1 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u2~bpo9+1 install ok installed libllvm6.0:amd64 libllvm6.0 1:6.0-1~bpo9+1 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+deb9u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u2 install ok installed libngs-java libngs-java 1.3.0-2 install ok installed libngs-sdk-dev libngs-sdk-dev 1.3.0-2 install ok installed libngs-sdk1 libngs-sdk1 1.3.0-2 install ok installed libnlopt0:amd64 libnlopt0 2.4.2+dfsg-8~bpo9+1+b1 install ok installed libnspr4:amd64 libnspr4 2:4.12-6 install ok installed libnss3:amd64 libnss3 2:3.26.2-1.1+deb9u5 install ok installed libogg0:amd64 libogg0 1.3.2-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2+deb9u1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.20-1 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libproxy1v5:amd64 libproxy1v5 0.4.14-2+deb9u2 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libpulse0:amd64 libpulse0 10.0-1+deb9u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u6 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u6 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.5.3-1 install ok installed libpython3.5-minimal:amd64 libpython3.5-minimal 3.5.3-1+deb9u5 install ok installed libpython3.5-stdlib:amd64 libpython3.5-stdlib 3.5.3-1+deb9u5 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.8.0-2 install ok installed librsvg2-2:amd64 librsvg2-2 2.40.21-0+deb9u1 install ok installed librsvg2-common:amd64 librsvg2-common 2.40.21-0+deb9u1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u2 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsnappy-java libsnappy-java 1.1.2.6-1 install ok installed libsnappy-jni libsnappy-jni 1.1.2.6-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.3-3 install ok installed libsndfile1:amd64 libsndfile1 1.0.27-3+deb9u3 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.56.0-2+deb9u2 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.56.0-2+deb9u2 install ok installed libspoa1.1.3 libspoa1.1.3 1.1.3-2~bpo9+1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3~bpo9+1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1+deb9u2 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u6 install ok installed libssw0:amd64 libssw0 1.1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtbb2:amd64 libtbb2 4.3~20150611-2 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libthread-pool0 libthread-pool0 1.0.0-1~bpo9+1 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u8 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libvorbis0a:amd64 libvorbis0a 1.3.5-4+deb9u3 install ok installed libvorbisenc2:amd64 libvorbisenc2 1.3.5-4+deb9u3 install ok installed libwayland-client0:amd64 libwayland-client0 1.16.0-1~bpo9+1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.16.0-1~bpo9+1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.16.0-1~bpo9+1 install ok installed libwayland-egl1-mesa:amd64 libwayland-egl1-mesa 18.2.8-2~bpo9+1 install ok installed libwayland-server0:amd64 libwayland-server0 1.16.0-1~bpo9+1 install ok installed libwrap0:amd64 libwrap0 7.6.q-26 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u4 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u4 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.4-3+deb9u4 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.12-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.12-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.12-1 install ok installed libxcb-present0:amd64 libxcb-present0 1.12-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.12-1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+deb9u2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-1+b2 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b3 install ok installed libxkbcommon0:amd64 libxkbcommon0 0.7.1-2~deb9u1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u7 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.2-1+b2 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxz-java libxz-java 1.6-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1~bpo9+1 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed lsb-base lsb-base 9.20161125 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncbi-blast+ ncbi-blast+ 2.6.0-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb9u1 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed openjdk-8-jre:amd64 openjdk-8-jre 8u332-ga-1~deb9u1 install ok installed openjdk-8-jre-headless:amd64 openjdk-8-jre-headless 8u332-ga-1~deb9u1 install ok installed openssl openssl 1.1.0l-1~deb9u6 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed pilon pilon 1.22+dfsg-2~bpo9+2 install ok installed python python 2.7.13-2 install ok installed python-joblib python-joblib 0.10.3+git55-g660fe5d-1 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python-yaml python-yaml 3.12-1 install ok installed python2.7 python2.7 2.7.13-2+deb9u6 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u6 install ok installed python3 python3 3.5.3-1 install ok installed python3-minimal python3-minimal 3.5.3-1 install ok installed python3-pkg-resources python3-pkg-resources 33.1.1-1 install ok installed python3-setuptools python3-setuptools 33.1.1-1 install ok installed python3.5 python3.5 3.5.3-1+deb9u5 install ok installed python3.5-minimal python3.5-minimal 3.5.3-1+deb9u5 install ok installed racon racon 1.3.1-1~bpo9+1 install ok installed readline-common readline-common 7.0-3 install ok installed samtools samtools 1.7-2~bpo9+1 install ok installed scala-library scala-library 2.11.8-1 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed shared-mime-info shared-mime-info 1.8-1+deb9u1 install ok installed spades spades 3.12.0+dfsg-1~bpo9+1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed ucf ucf 3.0036 install ok installed unicycler unicycler 0.4.7+dfsg-1~bpo9+1 install ok installed unzip unzip 6.0-21+deb9u2 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed x11-common x11-common 1:7.7+19 install ok installed x11-utils x11-utils 7.7+3+b1 install ok installed xkb-data xkb-data 2.19-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 1m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'remove', 'adwaita-icon-theme', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dh-python', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnome-icon-theme', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.4.0', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libedlib0', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgbm1:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhogweed4:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm6.0:amd64', 'libmpdec2:amd64', 'libncurses5:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpulse0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libreadline7:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspoa1.1.3', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libthread-pool0', 'libtiff5:amd64', 'libunistring0:amd64', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.24', 'pilon', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2.7', 'python2.7-minimal', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.5', 'python3.5-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'xkb-data', 'unicycler'] 1m6.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adwaita-icon-theme bamtools bowtie2 bwa ca-certificates ca-certificates-java dconf-gsettings-backend dconf-service default-jre default-jre-headless dh-python fontconfig fontconfig-config fonts-dejavu-core glib-networking glib-networking-common glib-networking-services gnome-icon-theme gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme java-common java-wrappers libapache-pom-java libasound2 libasound2-data libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.4.0 libbsd0 libcairo-gobject2 libcairo2 libcap2 libcolord2 libcommons-compress-java libcommons-jexl2-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libedlib0 libegl-mesa0 libegl1 libelf1 libepoxy0 libexpat1 libffi6 libflac8 libfontconfig1 libfontenc1 libfreetype6 libgbm1 libgdbm3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-common libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhat-trie0 libhogweed4 libhts2 libhtsjdk-java libice6 libicu57 libidn11 libidn2-0 libjbig0 libjemalloc1 libjpeg62-turbo libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm6.0 libmpdec2 libncurses5 libnettle6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk1 libnlopt0 libnspr4 libnss3 libogg0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libperl5.24 libpixman-1-0 libpng16-16 libproxy1v5 libpsl5 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libreadline7 librest-0.7-0 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsndfile1 libsoup-gnome2.4-1 libsoup2.4-1 libspoa1.1.3 libsqlite3-0 libssh2-1 libssl1.1 libssw0 libtasn1-6 libtbb2 libthai-data libthai0 libthread-pool0 libtiff5 libunistring0 libvorbis0a libvorbisenc2 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-egl1-mesa libwayland-server0 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 lsb-base mime-support ncbi-blast+ ncbi-data openjdk-8-jre openjdk-8-jre-headless openssl perl perl-modules-5.24 pilon python python-joblib python-minimal python-yaml python2.7 python2.7-minimal python3 python3-minimal python3-pkg-resources python3-setuptools python3.5 python3.5-minimal racon readline-common samtools scala-library shared-mime-info spades ucf unicycler unzip x11-common x11-utils xkb-data 0 upgraded, 0 newly installed, 254 to remove and 0 not upgraded. After this operation, 752 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25199 files and directories currently installed.) Removing unicycler (0.4.7+dfsg-1~bpo9+1) ... Removing pilon (1.22+dfsg-2~bpo9+2) ... Removing default-jre (2:1.8-58+deb9u1) ... Removing openjdk-8-jre:amd64 (8u332-ga-1~deb9u1) ... Removing libatk-wrapper-java-jni:amd64 (0.33.3-22~bpo10+1) ... Removing libgtk-3-0:amd64 (3.22.11-1) ... Removing libgtk2.0-0:amd64 (2.24.31-2) ... Removing adwaita-icon-theme (3.22.0-1+deb9u1) ... Removing spades (3.12.0+dfsg-1~bpo9+1) ... Removing bamtools (2.4.1+dfsg-1) ... Removing bowtie2 (2.3.0-2) ... Removing bwa (0.7.17-1~bpo9+1) ... Removing default-jre-headless (2:1.8-58+deb9u1) ... Removing libgtk-3-common (3.22.11-1) ... Removing librest-0.7-0:amd64 (0.8.0-2) ... Removing libsoup-gnome2.4-1:amd64 (2.56.0-2+deb9u2) ... Removing libsoup2.4-1:amd64 (2.56.0-2+deb9u2) ... Removing glib-networking:amd64 (2.50.0-1+deb9u1) ... Removing gsettings-desktop-schemas (3.22.0-1) ... Removing dconf-gsettings-backend:amd64 (0.26.0-2+b1) ... Removing dconf-service (0.26.0-2+b1) ... Removing python3-setuptools (33.1.1-1) ... Removing python3-pkg-resources (33.1.1-1) ... Removing gnome-icon-theme (3.12.0-2) ... update-alternatives: using /usr/share/icons/gnome/scalable/places/gnome-foot.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode update-alternatives: warning: skip creation of /usr/share/icons/gnome/256x256/places/start-here.png because associated file /usr/share/icons/gnome/256x256/places/gnome-foot.png (of link group start-here.svg) doesn't exist Removing librsvg2-common:amd64 (2.40.21-0+deb9u1) ... Removing librsvg2-2:amd64 (2.40.21-0+deb9u1) ... Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing libcairo-gobject2:amd64 (1.14.8-1+deb9u1) ... Removing libcairo2:amd64 (1.14.8-1+deb9u1) ... Removing libatk-wrapper-java (0.33.3-22~bpo10+1) ... Removing x11-utils (7.7+3+b1) ... Removing libxft2:amd64 (2.3.2-1+b2) ... Removing glib-networking-services (2.50.0-1+deb9u1) ... Removing glib-networking-common (2.50.0-1+deb9u1) ... Removing gtk-update-icon-cache (3.22.11-1) ... Removing hicolor-icon-theme (0.15-1) ... Removing java-wrappers (0.1.28) ... Removing libcommons-lang-java (2.6-6) ... Removing libhtsjdk-java (2.8.1+dfsg-1) ... Removing libcommons-jexl2-java (2.1.1-3) ... Removing libcommons-logging-java (1.2-1) ... Removing libasound2:amd64 (1.1.3-5) ... Removing libasound2-data (1.1.3-5) ... Removing libpulse0:amd64 (10.0-1+deb9u1) ... Removing libasyncns0:amd64 (0.8-6) ... Removing libatk-bridge2.0-0:amd64 (2.30.0-5~bpo9+1) ... Removing libatk1.0-0:amd64 (2.30.0-2~bpo9+1) ... Removing libatk1.0-data (2.30.0-2~bpo9+1) ... Removing libtbb2:amd64 (4.3~20150611-2) ... Removing libatomic1:amd64 (6.3.0-18+deb9u1) ... Removing libatspi2.0-0:amd64 (2.30.0-7~bpo9+1) ... Removing libbamtools2.4.0 (2.4.1+dfsg-1) ... Removing libgl1-mesa-glx:amd64 (18.2.8-2~bpo9+1) ... Removing libgl1:amd64 (1.1.0-1~bpo9+1) ... Removing libglx0:amd64 (1.1.0-1~bpo9+1) ... Removing libglx-mesa0:amd64 (18.2.8-2~bpo9+1) ... Removing libwayland-egl1-mesa:amd64 (18.2.8-2~bpo9+1) ... Removing libegl1:amd64 (1.1.0-1~bpo9+1) ... Removing libegl-mesa0:amd64 (18.2.8-2~bpo9+1) ... Removing libxcb-xfixes0:amd64 (1.12-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libcap2:amd64 (1:2.25-1) ... Removing libcolord2:amd64 (1.3.3-2) ... Removing libcommons-compress-java (1.13-1) ... Removing libcroco3:amd64 (0.6.11-3) ... Removing samtools (1.7-2~bpo9+1) ... Removing libhts2:amd64 (1.7-2~bpo9+1) ... Removing libcurl3-gnutls:amd64 (7.52.1-5+deb9u16) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libdconf1:amd64 (0.26.0-2+b1) ... Removing libgl1-mesa-dri:amd64 (18.2.8-2~bpo9+1) ... Removing libdrm-amdgpu1:amd64 (2.4.95-1~bpo9+1) ... Removing libgbm1:amd64 (18.2.8-2~bpo9+1) ... Removing libdrm-radeon1:amd64 (2.4.95-1~bpo9+1) ... Removing libdrm-intel1:amd64 (2.4.95-1~bpo9+1) ... Removing libdrm-nouveau2:amd64 (2.4.95-1~bpo9+1) ... Removing libllvm6.0:amd64 (1:6.0-1~bpo9+1) ... Removing libedit2:amd64 (3.1-20160903-3) ... Removing racon (1.3.1-1~bpo9+1) ... Removing libedlib0 (1.2.3-3~bpo9+1) ... Removing libelf1:amd64 (0.168-1+deb9u1) ... Removing libepoxy0:amd64 (1.3.1-2) ... Removing python-yaml (3.12-1) ... Removing python-joblib (0.10.3+git55-g660fe5d-1) ... Removing libwayland-server0:amd64 (1.16.0-1~bpo9+1) ... Removing libwayland-cursor0:amd64 (1.16.0-1~bpo9+1) ... Removing libwayland-client0:amd64 (1.16.0-1~bpo9+1) ... Removing libsndfile1:amd64 (1.0.27-3+deb9u3) ... Removing libflac8:amd64 (1.3.2-2+deb9u2) ... Removing libfontenc1:amd64 (1:1.1.3-1+b2) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing ncbi-blast+ (2.6.0-1) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Removing libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Removing libgif7:amd64 (5.1.4-0.4) ... Removing libglapi-mesa:amd64 (18.2.8-2~bpo9+1) ... Removing shared-mime-info (1.8-1+deb9u1) ... Removing libjson-glib-1.0-0:amd64 (1.2.6-1) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u3) ... Removing libglvnd0:amd64 (1.1.0-1~bpo9+1) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u2~bpo9+1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libgtk2.0-common (2.24.31-2) ... Removing libhat-trie0:amd64 (0.0~git25f9e946-2) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Removing libicu57:amd64 (57.1-6+deb9u5) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (2.0.5-1~bpo9+1) ... Removing libtiff5:amd64 (4.0.8-2+deb9u8) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjemalloc1 (3.6.0-9.1) ... Removing libjson-glib-1.0-common (1.2.6-1) ... Removing libjsoncpp1:amd64 (1.7.4-3) ... Removing libldap-common (2.4.47+dfsg-3+deb10u2~bpo9+1) ... Removing libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u2) ... Removing libngs-java (1.3.0-2) ... Removing libngs-sdk-dev (1.3.0-2) ... Removing libngs-sdk1 (1.3.0-2) ... Removing libnlopt0:amd64 (2.4.2+dfsg-8~bpo9+1+b1) ... Removing libvorbisenc2:amd64 (1.3.5-4+deb9u3) ... Removing libvorbis0a:amd64 (1.3.5-4+deb9u3) ... Removing libogg0:amd64 (1.3.2-1) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libproxy1v5:amd64 (0.4.14-2+deb9u2) ... Removing libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Removing libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Removing libsensors4:amd64 (1:3.4.0-4) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libsnappy-java (1.1.2.6-1) ... Removing libsnappy-jni (1.1.2.6-1) ... Removing libsnappy1v5:amd64 (1.1.3-3) ... Removing libspoa1.1.3 (1.1.3-2~bpo9+1) ... Removing libssh2-1:amd64 (1.7.0-1+deb9u2) ... Removing libssw0:amd64 (1.1-1+b1) ... Removing libthai-data (0.1.26-1) ... Removing libthread-pool0 (1.0.0-1~bpo9+1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libwayland-egl1:amd64 (1.16.0-1~bpo9+1) ... Removing libwrap0:amd64 (7.6.q-26) ... Removing libx11-xcb1:amd64 (2:1.6.4-3+deb9u4) ... Removing libxcb-dri2-0:amd64 (1.12-1) ... Removing libxcb-dri3-0:amd64 (1.12-1) ... Removing libxcb-glx0:amd64 (1.12-1) ... Removing libxcb-present0:amd64 (1.12-1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxcb-shape0:amd64 (1.12-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libxcb-sync1:amd64 (1.12-1) ... Removing libxcomposite1:amd64 (1:0.4.4-2) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Removing libxdamage1:amd64 (1:1.1.4-2+b3) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxinerama1:amd64 (2:1.1.3-1+b3) ... Removing libxkbcommon0:amd64 (0.7.1-2~deb9u1) ... Removing libxmuu1:amd64 (2:1.1.2-2) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxshmfence1:amd64 (1.2-1+b2) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing libxz-java (1.6-1) ... Removing libyaml-0-2:amd64 (0.2.1-1~bpo9+1) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing scala-library (2.11.8-1) ... Removing unzip (6.0-21+deb9u2) ... Removing xkb-data (2.19-1+deb9u1) ... Removing libcommons-parent-java (39-3) ... Removing libapache-pom-java (10-2) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libdrm2:amd64 (2.4.95-1~bpo9+1) ... Removing libdrm-common (2.4.95-1~bpo9+1) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u6) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u6) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u6) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... Removing ca-certificates-java (20170929~deb9u3) ... Removing ca-certificates (20200601~deb9u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing openssl (1.1.0l-1~deb9u6) ... Removing openjdk-8-jre-headless:amd64 (8u332-ga-1~deb9u1) ... Removing dh-python (3.20180723~bpo9+1) ... Removing python3 (3.5.3-1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-dejavu-core (2.37-1) ... Removing java-common (0.58+deb9u1) ... Removing libcups2:amd64 (2.2.1-8+deb9u8) ... Removing libavahi-client3:amd64 (0.6.32-2+deb9u1) ... Removing libavahi-common3:amd64 (0.6.32-2+deb9u1) ... Removing libavahi-common-data:amd64 (0.6.32-2+deb9u1) ... Removing libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Removing python3.5 (3.5.3-1+deb9u5) ... Removing python3-minimal (3.5.3-1) ... Removing python3.5-minimal (3.5.3-1+deb9u5) ... Removing libexpat1:amd64 (2.2.0-2+deb9u5) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u2) ... Removing libgnutls30:amd64 (3.5.8-5+deb9u6) ... Removing libhogweed4:amd64 (3.3-1+deb9u1) ... Removing libgmp10:amd64 (2:6.1.2+dfsg-1+deb9u1) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Removing libidn11:amd64 (1.33-1+deb9u1) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2+deb9u2) ... Removing libkrb5-3:amd64 (1.15-1+deb9u3) ... Removing libk5crypto3:amd64 (1.15-1+deb9u3) ... Removing libkrb5support0:amd64 (1.15-1+deb9u3) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing liblcms2-2:amd64 (2.8-4+deb9u1) ... Removing libpython3-stdlib:amd64 (3.5.3-1) ... Removing libpython3.5-stdlib:amd64 (3.5.3-1+deb9u5) ... Removing libmpdec2:amd64 (2.4.2-1) ... Removing libnettle6:amd64 (3.3-1+deb9u1) ... Removing libnss3:amd64 (2:3.26.2-1.1+deb9u5) ... Removing libnspr4:amd64 (2:4.12-6) ... Removing libp11-kit0:amd64 (0.23.3-2+deb9u1) ... Removing libpcsclite1:amd64 (1.8.20-1) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libpython3.5-minimal:amd64 (3.5.3-1+deb9u5) ... Removing libreadline7:amd64 (7.0-3) ... Removing libsqlite3-0:amd64 (3.27.2-3~bpo9+1) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u6) ... Removing libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (9.20161125) ... Removing mime-support (3.60) ... Removing readline-common (7.0-3) ... Removing ucf (3.0036) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u4) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1+deb9u1) ... Removing libx11-data (2:1.6.4-3+deb9u4) ... Removing libxau6:amd64 (1:1.0.8-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 1m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'remove', 'adwaita-icon-theme', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dh-python', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnome-icon-theme', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.4.0', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libedlib0', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgbm1:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhogweed4:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm6.0:amd64', 'libmpdec2:amd64', 'libncurses5:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpulse0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libreadline7:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspoa1.1.3', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libthread-pool0', 'libtiff5:amd64', 'libunistring0:amd64', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.24', 'pilon', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2.7', 'python2.7-minimal', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.5', 'python3.5-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'xkb-data', 'unicycler'] 1m6.3s INFO: Running scripts post_remove 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_remove_exceptions'] 1m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_remove_exceptions'] 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--purge', 'adwaita-icon-theme', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dh-python', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnome-icon-theme', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.4.0', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libedlib0', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgbm1:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhogweed4:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm6.0:amd64', 'libmpdec2:amd64', 'libncurses5:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpulse0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libreadline7:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspoa1.1.3', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libthread-pool0', 'libtiff5:amd64', 'libunistring0:amd64', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.24', 'pilon', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2.7', 'python2.7-minimal', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.5', 'python3.5-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'xkb-data'] 1m7.0s DUMP: (Reading database ... 4531 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (3.22.0-1+deb9u1) ... dpkg: warning: ignoring request to remove bamtools which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed Purging configuration files for ca-certificates (20200601~deb9u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20170929~deb9u3) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove dh-python which isn't installed Purging configuration files for fontconfig (2.11.0-6.7+b1) ... Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove glib-networking which isn't installed dpkg: warning: ignoring request to remove glib-networking-common which isn't installed dpkg: warning: ignoring request to remove glib-networking-services which isn't installed dpkg: warning: ignoring request to remove gnome-icon-theme which isn't installed dpkg: warning: ignoring request to remove gsettings-desktop-schemas which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed Purging configuration files for java-common (0.58+deb9u1) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libasyncns0 which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk-wrapper-java which isn't installed dpkg: warning: ignoring request to remove libatk-wrapper-java-jni which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-data which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libatspi2.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.4.0 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcap2 which isn't installed dpkg: warning: ignoring request to remove libcolord2 which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcroco3 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libedlib0 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libflac8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed Purging configuration files for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (18.2.8-2~bpo9+1) ... dpkg: warning: ignoring request to remove libgl1-mesa-glx which isn't installed dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u3) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgmp10 which isn't installed dpkg: warning: ignoring request to remove libgnutls30 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Purging configuration files for libgtk-3-0:amd64 (3.22.11-1) ... Purging configuration files for libgtk-3-common (3.22.11-1) ... Purging configuration files for libgtk2.0-0:amd64 (2.24.31-2) ... Purging configuration files for libgtk2.0-common (2.24.31-2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhat-trie0 which isn't installed dpkg: warning: ignoring request to remove libhogweed4 which isn't installed dpkg: warning: ignoring request to remove libhts2 which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjemalloc1 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjson-glib-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libjson-glib-1.0-common which isn't installed dpkg: warning: ignoring request to remove libjsoncpp1 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u2~bpo9+1) ... dpkg: warning: ignoring request to remove libllvm6.0 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libnettle6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-sdk-dev which isn't installed dpkg: warning: ignoring request to remove libngs-sdk1 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed Purging configuration files for libogg0:amd64 (1.3.2-1) ... dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libproxy1v5 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpulse0:amd64 (10.0-1+deb9u1) ... dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.5-minimal:amd64 (3.5.3-1+deb9u5) ... dpkg: warning: ignoring request to remove libpython3.5-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librest-0.7-0 which isn't installed dpkg: warning: ignoring request to remove librsvg2-2 which isn't installed dpkg: warning: ignoring request to remove librsvg2-common which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors4:amd64 (1:3.4.0-4) ... dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsndfile1 which isn't installed dpkg: warning: ignoring request to remove libsoup-gnome2.4-1 which isn't installed dpkg: warning: ignoring request to remove libsoup2.4-1 which isn't installed dpkg: warning: ignoring request to remove libspoa1.1.3 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u6) ... dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libthread-pool0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libvorbis0a which isn't installed dpkg: warning: ignoring request to remove libvorbisenc2 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1-mesa which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed Purging configuration files for libwrap0:amd64 (7.6.q-26) ... dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxv1 which isn't installed dpkg: warning: ignoring request to remove libxxf86dga1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for mime-support (3.60) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... dpkg: warning: ignoring request to remove openjdk-8-jre which isn't installed Purging configuration files for openjdk-8-jre-headless:amd64 (8u332-ga-1~deb9u1) ... Purging configuration files for openssl (1.1.0l-1~deb9u6) ... Purging configuration files for perl (5.24.1-3+deb9u7) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove pilon which isn't installed Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove python-joblib which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-yaml which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u6) ... Purging configuration files for python3 (3.5.3-1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3.5 which isn't installed Purging configuration files for python3.5-minimal (3.5.3-1+deb9u5) ... dpkg: warning: ignoring request to remove racon which isn't installed Purging configuration files for readline-common (7.0-3) ... dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove scala-library which isn't installed Purging configuration files for shared-mime-info (1.8-1+deb9u1) ... dpkg: warning: ignoring request to remove spades which isn't installed Purging configuration files for ucf (3.0036) ... Purging configuration files for unzip (6.0-21+deb9u2) ... Purging configuration files for x11-common (1:7.7+19) ... Purging configuration files for x11-utils (7.7+3+b1) ... dpkg: warning: ignoring request to remove xkb-data which isn't installed 1m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--purge', 'adwaita-icon-theme', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dh-python', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnome-icon-theme', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libasyncns0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.4.0', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libedlib0', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libflac8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libgbm1:amd64', 'libgdbm3:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhogweed4:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libice6:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm6.0:amd64', 'libmpdec2:amd64', 'libncurses5:amd64', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk1', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libogg0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.24:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpulse0:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libreadline7:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors4:amd64', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsndfile1:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspoa1.1.3', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libthread-pool0', 'libtiff5:amd64', 'libunistring0:amd64', 'libvorbis0a:amd64', 'libvorbisenc2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-egl1-mesa:amd64', 'libwayland-server0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'openjdk-8-jre:amd64', 'openjdk-8-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.24', 'pilon', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2.7', 'python2.7-minimal', 'python3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.5', 'python3.5-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'shared-mime-info', 'spades', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'xkb-data'] 1m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--purge', 'unicycler'] 1m7.0s DUMP: dpkg: warning: ignoring request to remove unicycler which isn't installed 1m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--purge', 'unicycler'] 1m7.0s INFO: Running scripts post_purge 1m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_purge_exceptions'] 1m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_purge_exceptions'] 1m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--purge', '--pending'] 1m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--purge', '--pending'] 1m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--remove', '--pending'] 1m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg', '--remove', '--pending'] 1m7.0s INFO: Running scripts post_test 1m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_test_exceptions'] 1m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'tmp/scripts/post_test_exceptions'] 1m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 1m7.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 1m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg-divert', '--list'] 1m7.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'dpkg-divert', '--list'] 1m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'clean'] 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h', 'apt-get', 'clean'] 1m7.5s DEBUG: Recording chroot state 1m8.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/shm'] 1m8.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/shm'] 1m8.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/console'] 1m8.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/console'] 1m8.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/ptmx'] 1m8.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/ptmx'] 1m8.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/pts'] 1m8.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/dev/pts'] 1m8.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/proc'] 1m8.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h/proc'] 1m8.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 1m8.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzi5jrg3h'] 1m8.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzi5jrg3h 1m8.4s INFO: PASS: Upgrading between Debian distributions. 1m8.4s INFO: PASS: All tests. 1m8.4s INFO: piuparts run ends. ret=0 End: 2023-04-14 04:09:39 GMT