Start: 2023-04-19 21:04:28 GMT [stretch] Package: science-biology Source: debian-science Version: 1.7 Installed-Size: 37 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.7), science-config (= 1.7) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description: Debian Science Biology packages Homepage: http://wiki.debian.org/DebianScience/ Description-md5: 59633f821572a37f2f07d2231a8d2300 Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.7_all.deb Size: 16416 MD5sum: 00327a3b7447eb2e28e3e6f0eefae35b SHA256: 7675e9023e8d241f3df72bcb4fa7cabb2b6045594a2cdf341e88c13b54f54b1c [buster] Package: science-biology Source: debian-science Version: 1.10 Installed-Size: 38 Maintainer: Debian Science Team Architecture: all Depends: science-config (= 1.10), science-tasks (= 1.10) Recommends: critterding, med-bio Suggests: avida-base, bauble, genesis, med-bio-dev Description: Debian Science Biology packages Homepage: https://wiki.debian.org/DebianScience/ Description-md5: 59633f821572a37f2f07d2231a8d2300 Tag: field::biology, role::metapackage, suite::debian Section: science Priority: optional Filename: pool/main/d/debian-science/science-biology_1.10_all.deb Size: 18368 MD5sum: a7189c38a9cfbb9002d0a8d986721442 SHA256: b4e3ab42492a801eb31d3d27ba4b307f2b9913e1b62723ebcb3d7d59018650d3 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt science-biology=1.10 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt science-biology=1.10 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmplpr_664k 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmplpr_664k 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmplpr_664k', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmplpr_664k', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmplpr_664k/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmplpr_664k/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmplpr_664k/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-get', 'update'] 0m3.0s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s INFO: Running scripts post_setup 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplpr_664k'] 0m5.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmplpr_664k'] 0m5.4s INFO: Running scripts is_testable 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s INFO: Running scripts pre_test 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_test_root_password'] 0m5.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_test_root_password'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-cache', 'show', '--no-all-versions', 'science-biology'] 0m5.6s DUMP: Package: science-biology Source: debian-science Version: 1.7 Installed-Size: 37 Maintainer: Debian Science Team Architecture: all Depends: science-tasks (= 1.7), science-config (= 1.7) Recommends: bauble, critterding, med-bio Suggests: avida-base, genesis, med-bio-dev Description-en: Debian Science Biology packages This metapackage will install Debian Science packages related to Biology. You might also be interested in the field::biology debtag. . This metapackage makes use of the packages med-bio and med-bio-dev (for development of biological applications) which are maintained by Debian Med - another Debian Pure Blend. If you are a biologist you are most probably interested in the Debian Med project which deals with biology and medicine in much more detail then the more general Debian Science. Description-md5: 59633f821572a37f2f07d2231a8d2300 Homepage: http://wiki.debian.org/DebianScience/ Tag: field::biology, role::metapackage, suite::debian Section: science Priority: extra Filename: pool/main/d/debian-science/science-biology_1.7_all.deb Size: 16416 MD5sum: 00327a3b7447eb2e28e3e6f0eefae35b SHA256: 7675e9023e8d241f3df72bcb4fa7cabb2b6045594a2cdf341e88c13b54f54b1c 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-cache', 'show', '--no-all-versions', 'science-biology'] 0m5.6s INFO: apt-cache knows about the following packages: science-biology 0m5.6s INFO: Running scripts pre_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-cache', 'policy'] 0m5.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-cache', 'policy'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-cache', 'policy', 'science-biology'] 0m5.9s DUMP: science-biology: Installed: (none) Candidate: 1.7 Version table: 1.7 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-cache', 'policy', 'science-biology'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-get', '-y', 'install', 'science-biology'] 60m7.4s ERROR: Terminating command due to excessive runtime 60m10.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: abacas abyss acedb-other acedb-other-belvu acedb-other-dotter adapterremoval adun-core adwaita-icon-theme aegean aevol aglfn alien-hunter alter-sequence-alignment altree amap-align ampliconnoise andi anfo ant ant-optional apache2 apache2-bin apache2-data apache2-utils apbs aragorn arden ariba art-nextgen-simulation-tools artemis artfastqgenerator astro-tasks at-spi2-core atac augustus augustus-data autoconf autodock autodock-vina autogrid automake autopoint autotools-dev axe-demultiplexer ballview bamtools barrnap bauble bc bcftools beagle beast-mcmc beast2-mcmc bedtools beignet-opencl-icd berkeley-express binfmt-support binutils bio-eagle bio-rainbow bioperl bioperl-run biosquid blasr blast2 blends-common blt bowtie bowtie2 boxshade brig bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs cgview chimeraslayer circlator circos circos-tools clearcut clonalframe clustalo clustalw clustalx codonw concavity conservation-code cpp cpp-6 crac critterding cron curl cutadapt cython daligner dascrubber datamash dawg dazzdb dbus dbus-java-bin dconf-gsettings-backend dconf-service debhelper debichem-tasks default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism dialign dialign-tx dialign-tx-data dindel dirmngr discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dpkg-dev dssp dvipng dwgsim ea-utils ecopcr edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate f2j fakeroot falcon fastahack fastaq fastdnaml fastjar fastlink fastml fastqc fastqtl fasttree fastx-toolkit ffindex figtree file filo fitgcp flexbar fml-asm fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-mathjax fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre fop freecontact freeglut3 fsa fsm-lite g++ g++-6 gamgi garli garlic gasic gawk gbrowse gcc gcc-6 gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-6 ghemical ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnome-icon-theme gnupg gnupg-agent gnupg-l10n gnuplot gnuplot-data gnuplot-qt gnustep-base-common gnustep-base-runtime 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python-cycler python-dateutil python-decorator python-dendropy python-dev python-docutils python-egenix-mxdatetime python-egenix-mxtools python-enum34 python-functools32 python-future python-gdata python-glade2 python-gmpy python-gobject-2 python-gtk2 python-h5py python-html5lib python-htseq python-idna python-imagesize python-imaging python-intervaltree python-intervaltree-bio python-ipaddress python-ipython python-ipython-genutils python-iso8601 python-jdcal python-jinja2 python-joblib python-kineticstools python-lmfit python-lxml python-mako python-markupsafe python-matplotlib python-matplotlib-data python-matplotlib-venn python-minimal python-mpi4py python-mpmath python-msgpack python-multipletau python-mysqldb python-networkx python-nose python-numexpr python-numpy python-openbabel python-opengl python-openpyxl python-openssl python-pandas python-pandas-lib python-pathlib2 python-patsy python-pbalign python-pbbanana python-pbcommand python-pbconsensuscore python-pbcore python-pbgenomicconsensus python-pbh5tools python-pbsuite-utils python-pexpect python-pickleshare python-pil python-pkg-resources python-ply python-pmw python-prompt-toolkit python-ptyprocess python-py python-pyasn1 python-pyglet python-pygments python-pygraphviz python-pyparsing python-pysam python-pysqlite2 python-pytest python-qt4 python-renderpm python-reportlab python-reportlab-accel python-requests python-roman python-rpy2 python-ruffus python-scipy python-seaborn python-setuptools python-simplegeneric python-simplejson python-singledispatch python-sip python-six python-sklearn python-sklearn-lib python-sortedcontainers python-sphinx python-sqlalchemy python-sqlalchemy-ext python-statsmodels python-statsmodels-lib python-subprocess32 python-sympy python-sympy-doc python-tables python-tables-data python-tables-lib python-tk python-traitlets python-tz python-urllib3 python-wcwidth python-webencodings python-wxgtk3.0 python-wxversion python-xlrd python-xlwt python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-biopython python3-bs4 python3-bz2file python3-chardet python3-cutadapt python3-decorator python3-dendropy python3-html5lib python3-jdcal python3-lxml python3-minimal python3-networkx python3-nose python3-numpy python3-openpyxl python3-pil python3-pkg-resources python3-py python3-pymummer python3-pysam python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-screed python3-six python3-webencodings python3-xopen python3-yaml python3.5 python3.5-minimal qdbus qt-at-spi qt5-gtk-platformtheme qtchooser qtcore4-l10n qtltools qttranslations5-l10n r-base r-base-core r-base-dev r-base-html r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biomformat r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-deseq2 r-bioc-dnacopy r-bioc-ebseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-limma r-bioc-mergeomics r-bioc-metagenomeseq r-bioc-multtest r-bioc-phyloseq r-bioc-qvalue r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-ade4 r-cran-adegenet r-cran-adegraphics r-cran-adephylo r-cran-ape r-cran-assertthat r-cran-base64enc r-cran-bbmle r-cran-bio3d r-cran-bitops r-cran-blockmodeling r-cran-bold r-cran-boot r-cran-catools r-cran-chron r-cran-class r-cran-cluster r-cran-coda r-cran-codetools r-cran-colorspace r-cran-combinat r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-deldir r-cran-dichromat r-cran-digest r-cran-distory r-cran-doparallel r-cran-dplyr r-cran-ellipse r-cran-evaluate r-cran-fastcluster r-cran-fastmatch r-cran-fields r-cran-foreach r-cran-foreign r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-g.data r-cran-gam r-cran-gdata r-cran-genabel r-cran-genabel.data r-cran-getopt r-cran-ggplot2 r-cran-glmnet r-cran-globals r-cran-gmodels r-cran-googlevis r-cran-gplots r-cran-gridbase r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-igraph r-cran-inline r-cran-irlba r-cran-iterators r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-learnbayes r-cran-listenv r-cran-littler r-cran-luminescence r-cran-magrittr r-cran-maps r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-minpack.lm r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nmf r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-optparse r-cran-permute r-cran-phangorn r-cran-phylobase r-cran-pkgkitten r-cran-pkgmaker r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-progress r-cran-pscbs r-cran-qtl r-cran-quadprog r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-randomforest r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl r-cran-rcurl r-cran-readxl r-cran-registry r-cran-rentrez r-cran-reshape r-cran-reshape2 r-cran-rgl r-cran-ritis r-cran-rlumshiny r-cran-rncl r-cran-rnexml r-cran-rngtools r-cran-rocr r-cran-rotl r-cran-rpart r-cran-rredlist r-cran-rsqlite r-cran-scales r-cran-scatterd3 r-cran-segmented r-cran-seqinr r-cran-shape r-cran-shiny r-cran-shinybs r-cran-snow r-cran-solrium r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatial r-cran-spdep r-cran-stringi r-cran-stringr r-cran-survival r-cran-taxize r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-treescape r-cran-uuid r-cran-vegan r-cran-viridis r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml r-cran-zoo r-doc-html r-mathlib r-other-mott-happy.hbrem r-recommended rake rambo-k rapmap rasmol raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-classifier-doc rdp-readseq readline-common readseq reapr relion-bin+gui rename repeatmasker-recon reprof rhino rna-star rnahybrid roary rsem rsync rtax ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration saint salmon samtools science-config science-tasks scrm scythe seaview seer seqan-apps seqprep seqtk sga sgml-base shared-mime-info sibsim4 sickle sigma-align sim4 sim4db smalt smithwaterman smrtanalysis snap snap-aligner sniffles snp-sites snpomatic soapdenovo soapdenovo2 sortmerna spaced spades sphinx-common sphinx-rtd-theme-common sprai spread-phy sqlite3 squizz sra-toolkit srst2 ssake ssl-cert sspace ssw-align stacks staden staden-common staden-io-lib-utils subread suitename sumaclust sumatra sumtrees surankco swarm swi-prolog swi-prolog-nox swi-prolog-x sysstat t-coffee t1utils tabix tantan tasksel tasksel-data tcl tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc texlive-science texlive-science-doc theseus tigr-glimmer time tipa tk tk8.6 tk8.6-blt2.5 tklib tm-align tophat toppred transdecoder transrate-tools transtermhp tree-puzzle tree-puzzle-doc treeview treeviewx trimmomatic trinityrnaseq trinityrnaseq-examples ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-liberation tzdata uc-echo ucf unzip varna vcftools velvet velvetoptimiser vsearch wigeon wise wise-data x11-common x11-utils x11-xserver-utils xauth xbitmaps xdg-user-dirs xdg-utils xfonts-100dpi xfonts-encodings xfonts-utils xkb-data xml-core xsltproc xterm xz-utils zalign zip zlib1g-dev Suggested packages: altree-examples ant-doc ant-gcj default-jdk | java-compiler | java-sdk ant-optional-gcj antlr javacc jython libbcel-java libmail-java libjdepend-java libjsch-java liboro-java libregexp-java apache2-doc apache2-suexec-pristine | apache2-suexec-custom art-nextgen-simulation-tools-profiles autoconf-archive gnu-standards autoconf-doc autodocktools beagle-doc beast-mcmc-doc beast2-mcmc-doc binutils-doc bio-eagle-examples gmap paml blends-doc blt-demo bowtie-examples bowtie2-examples xfig wamerican | wordlist whois vacation devscripts cpp-doc gcc-6-locales anacron logrotate checksecurity cython-doc default-dbus-session-bus | dbus-session-bus dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring meshlab embassy emboss-doc emboss-test eximon4 exim4-doc-html | exim4-doc-info spf-tools-perl swaks fastlink-doc fastqtl-doc fonts-noto fontforge fop-doc bash-completion g++-multilib g++-6-multilib gcc-6-doc libstdc++6-6-dbg gamgi-data gamgi-doc garlic-doc openbabel gawk-doc gbrowse-data gbrowse-calign libfile-nfslock-perl gcc-multilib flex bison gdb gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gdpc-examples gqview gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev ghostscript-x parcimonie xloadimage scdaemon gnuplot-doc gnustep-base-doc graphviz-doc groff tcsh | c-shell gvfs hmmer-doc hmmer2-doc hmmer2-pvm imagemagick-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils transfig ufraw-batch isoquery junit-doc libevent-perl libio-async-perl libpoe-perl lrzip libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc nas libdigest-hmac-perl libgssapi-perl libavalon-framework-java-doc libxml-sax-expatxs-perl java-virtual-machine libjgrapht-java libbiojava-java-doc liblapack-doc-man liblapack-doc bsh glibc-doc colord libcommons-collections3-java-doc libcommons-collections4-java-doc libcommons-beanutils-java libcommons-digester-java libcommons-jxpath-java libcommons-vfs-java libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-io-java-doc libcommons-jexl2-java-doc libcommons-lang-java-doc libcommons-lang3-java-doc libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net-java-doc cups-common libnet-daemon-perl libsql-statement-perl libdbus-java-doc libdom4j-java-doc libfann-dev libfann-doc libfftw3-bin libfftw3-dev fuse fonts-dustin libgd-tools libgetopt-java-doc glew-utils libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev gnutls-bin gpm gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libvisual-0.4-plugins gstreamer1.0-tools libhsqldb-java-doc libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins icu-doc libdb-file-lock-perl libfile-readbackwards-perl libbcpkix-java libbcprov-java libxml-security-java libitext5-java-doc libjargs-java-doc libjaxp1.3-java-gcj libjdom1-java-doc libjline-java-doc libjmol-java-doc libjs-jquery-ui-docs fonts-mathjax-extras libjs-mathjax-doc libjsr305-java-doc liblcms2-utils libdbd-csv-perl liblog-dispatch-filerotate-perl librrds-perl liblog4j1.2-java-doc libtool-doc libcrypt-ssleay-perl liblzma-doc inkscape libmatthew-java-doc libmbedtls-doc libmojolicious-perl libnanoxml2-java-doc ncurses-doc opus-tools uuid libscalar-number-perl pciutils pcscd pulseaudio libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer libqt4-dev qt5-image-formats-plugins qtwayland5 qt4-qtconfig readline-doc librsvg2-bin libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libsaxon-java-doc lm-sensors libnet-jabber-perl libstdc++-6-doc libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libswing-layout-java-doc gcj-jdk tre-agrep libauthen-ntlm-perl libxalan2-java-doc libxsltc-java libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc libunicode-map8-perl libunicode-string-perl xml-twig-tools libxmlgraphics-commons-java-doc libxom-java-doc libyaml-shell-perl loki-doc m4-doc maffilter-examples mailutils-mh mailutils-doc make-doc less massxpert-doc mcl-doc acacia adun.app amos-assembler amoscmp apollo arachne arb asap axparafit axpcoords bagpipe baitfisher bambus beads bedops biceps big-blast bigsdb bio-tradis biomaj biomaj-watcher bitseq blat blimps-utils blixem blobology btk-core cactus caftools cain canu cap3 ccs cdna-db cinema clonalorigin cluster3 cmap cnvkit coalesce compclust condetri contrafold contralign coot copycat crossbow crux-toolkit cufflinks cytoscape das-proserver dazzle decipher deepnano diamond-aligner e-hive ecell elph embassy-phylip emboss-explorer emmax emperor ensembl est-db estferret estscan euler-sr euler2 exabayes exalt examl excavator fasta fasta3 ffp figaro finex fluctuate forester forge freebayes galaxy gassst gatk gbioseq gbrowse-syn genemark genesplicer genetrack genezilla genographer getdata glimmerhmm gmv grabix grogui haploview hawkeye hexamer hilbertvisgui htqc igv inspect jalview jbrowse jigsaw jstreeview kclust kempbasu lagan lamarc lofreq logomat-m lucy mach-haplotyper mage2tab maker2 malt manta martj maude maxd melting-gui meme mesquite metabit metarep metastudent-data-2 metastudent-data-3 mgltools-cadd mgltools-pmv mgltools-vision migrate minimus mirbase mobyle mobyle-programs mobyle-tutorials modeller molekel mosaik-aligner mpsqed mptp mrs msatfinder mugsy mummergpu mview nanocall nextsv ngila ngsqctoolkit nw-align oases obitools obo-edit oligoarrayaux omegamap openms operondb pal2nal paleomix partigene partitionfinder patman patristic pcma pfaat pftools phagefinder phast phpphylotree phylographer phylophlan phyloviz-core phylowin pipasic plato profit prokka prot4est pscan-tfbs psipred psortb pssh2 pyrophosphate-tools python-orange python-reaper python3-biomaj3 qcumber qiime qtlcart qualimap r-bioc-aroma.light r-bioc-go.db r-bioc-savr r-cran-boolnet r-cran-metamix r-cran-pheatmap r-cran-qqman r-other-apmswapp r-other-valdar-bagphenotype.library raccoon radiant raxml-ng rbs-finder recombine repeatmasker rmblast roadtrips roche454ace2caf roguenarok rose rosetta rsat runcircos-gui sambamba sap science-workflow segemehl seq-gen seqsero sequenceconverter.app sift situs snpeff sparta spice splitstree ssaha strap strap-base tacg taverna taxinspector tetra tide tigr-glimmer-mg tnseq-transit topp trace2dbest tracetuner treebuilder3d treetime tripal trnascan-se tvc twain ugene unc-fish uniprime varmatch varscan vienna-rna vmd x-tandem-pipeline zodiac-zeden menu-l10n gksu | kde-runtime | ktsuss gridengine-client mira-doc mpqc-support mrbayes-doc mustang-testdata icedtea-8-plugin libnss-mdns fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic keychain libpam-ssh monkeysphere ssh-askpass ed diffutils-doc pbalign-doc libterm-readline-gnu-perl | libterm-readline-perl-perl perlprimer-doc phylip-doc pinentry-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra profchop profcon metadisorder profphd snapfun pdf-viewer uclust python-doc libxml2-utils python-astropy-affiliated python-astropy-doc python-beautifulsoup python-biom-format-doc python-rdflib python-psycopg2 python-cogent-doc python-configobj-doc python-crypto-dbg python-crypto-doc python-cryptography-doc python-cryptography-vectors python-cycler-doc texlive-lang-french python-egenix-mxdatetime-dbg python-egenix-mxdatetime-doc python-egenix-mxtools-dbg python-egenix-mxtools-doc python-enum34-doc python-future-doc python-gdata-doc python-twisted-core python-gtk2-doc python-gmpy-doc python-gobject-2-dbg python-h5py-doc python-genshi python-jinja2-doc python-pybigwig python-lmfit-doc python-lxml-dbg python-lxml-doc python-beaker python-mako-doc gir1.2-gtk-3.0 python-cairocffi python-excelerator python-gobject python-matplotlib-doc python-tornado python-traits ttf-staypuft python-gmpy2 python-mpmath-doc default-mysql-server | virtual-mysql-server python-mysqldb-dbg python-networkx-doc python-coverage python-nose-doc python-numpy-dbg python-numpy-doc libgle3 python-openssl-doc python-openssl-dbg python-pandas-doc python-patsy-doc python-pbcore-doc python-consensuscore2 python-pexpect-doc python-pil-doc python-pil-dbg python-ply-doc python-pmw-doc subversion python-pytest-xdist doc-base python-pygraphviz-doc python-pyparsing-doc python-pysqlite2-doc python-pysqlite2-dbg python-mock python-qt4-dbg python-renderpm-dbg python-egenix-mxtexttools python-reportlab-doc python-socks python-rpy-docs python-drmaa python-scipy-doc python-setuptools-doc python-dap python-scikits-optimization python-sklearn-doc python-sortedcontainers-doc python-sphinx-rtd-theme sphinx-doc python-sqlalchemy-doc python-fdb python-pymssql python-statsmodels-doc python-tables-doc python-netcdf vitables tix python-tk-dbg python-ntlm wx3.0-doc python2.7-doc python3-doc python3-tk python3-venv python3-matplotlib python3-rdflib python3-psycopg2 python3-genshi python3-lxml-dbg python3-dev python3-numpy-dbg python3-pil-dbg python3-setuptools python3-renderpm-dbg python3-egenix-mxtexttools python3.5-venv python3.5-doc qtltools-example ess r-doc-info | r-doc-pdf texinfo r-cran-runit r-bioc-graph r-cran-batchjobs r-cran-bbmisc r-cran-rmpi r-bioc-shortread r-bioc-affy r-cran-rjson r-cran-biasedurn r-cran-statmod r-cran-gss r-bioc-snpstats r-cran-maptools r-cran-expm r-cran-rms r-cran-ncdf4 r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-hexbin r-cran-xts r-cran-caret r-cran-rmysql r-cran-polyclip r-cran-mlbench r-cran-lahman r-cran-genetics r-cran-haplo.stats r-cran-mapproj r-cran-multcomp r-cran-quantreg r-cran-testit r-cran-png r-cran-formatr r-cran-tikzdevice r-cran-rjags r-cran-mapdata r-cran-abind r-cran-dbitest r-cran-cairo r-cran-rsprng r-cran-rlecuyer r-cran-devtools rasmol-doc raster3d-doc librhino-java-doc openssh-server ri ruby-dev bundler avida-base genesis med-bio-dev sgml-base-doc sqlite3-doc ssake-examples openssl-blacklist staden-io-lib-examples prolog-el isag t-coffee-examples tcl-tclreadline net-tools tcllib-critcl xpdf-reader | pdf-viewer chktex dvidvi fragmaster lacheck latexdiff latexmk purifyeps xindy psutils cm-super dot2tex prerex ruby-tcltk | libtcltk-ruby theseus-examples treetool collectl velvet-example wise-doc nickle cairo-5c xorg-docs-core gvfs-bin xfs | xserver xfonts-cyrillic Recommended packages: predictprotein profphd relion-bin | relion-bin+mpi python-consensuscore2 The following NEW packages will be installed: abacas abyss acedb-other acedb-other-belvu acedb-other-dotter adapterremoval adun-core adwaita-icon-theme aegean aevol aglfn alien-hunter alter-sequence-alignment altree amap-align ampliconnoise andi anfo ant ant-optional apache2 apache2-bin apache2-data apache2-utils apbs aragorn arden ariba art-nextgen-simulation-tools artemis artfastqgenerator astro-tasks at-spi2-core atac augustus augustus-data autoconf autodock autodock-vina autogrid automake autopoint autotools-dev axe-demultiplexer ballview bamtools barrnap bauble bc bcftools beagle beast-mcmc beast2-mcmc bedtools beignet-opencl-icd berkeley-express binfmt-support binutils bio-eagle bio-rainbow bioperl bioperl-run biosquid blasr blast2 blends-common blt bowtie bowtie2 boxshade brig bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs cgview chimeraslayer circlator circos circos-tools clearcut clonalframe clustalo clustalw clustalx codonw concavity conservation-code cpp cpp-6 crac critterding cron curl cutadapt cython daligner dascrubber datamash dawg dazzdb dbus dbus-java-bin dconf-gsettings-backend dconf-service debhelper debichem-tasks default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism dialign dialign-tx dialign-tx-data dindel dirmngr discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dpkg-dev dssp dvipng dwgsim ea-utils ecopcr edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate f2j fakeroot falcon fastahack fastaq fastdnaml fastjar fastlink fastml fastqc fastqtl fasttree fastx-toolkit ffindex figtree file filo fitgcp flexbar fml-asm fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-mathjax fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre fop freecontact freeglut3 fsa fsm-lite g++ g++-6 gamgi garli garlic gasic gawk gbrowse gcc gcc-6 gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-6 ghemical ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnome-icon-theme gnupg gnupg-agent gnupg-l10n gnuplot gnuplot-data gnuplot-qt gnustep-base-common 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python-xlwt python-yaml python2.7 python2.7-dev python2.7-minimal python3 python3-biopython python3-bs4 python3-bz2file python3-chardet python3-cutadapt python3-decorator python3-dendropy python3-html5lib python3-jdcal python3-lxml python3-minimal python3-networkx python3-nose python3-numpy python3-openpyxl python3-pil python3-pkg-resources python3-py python3-pymummer python3-pysam python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-screed python3-six python3-webencodings python3-xopen python3-yaml python3.5 python3.5-minimal qdbus qt-at-spi qt5-gtk-platformtheme qtchooser qtcore4-l10n qtltools qttranslations5-l10n r-base r-base-core r-base-dev r-base-html r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biomformat r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-deseq2 r-bioc-dnacopy r-bioc-ebseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-hilbertvis r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-limma r-bioc-mergeomics r-bioc-metagenomeseq r-bioc-multtest r-bioc-phyloseq r-bioc-qvalue r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-ade4 r-cran-adegenet r-cran-adegraphics r-cran-adephylo r-cran-ape r-cran-assertthat r-cran-base64enc r-cran-bbmle r-cran-bio3d r-cran-bitops r-cran-blockmodeling r-cran-bold r-cran-boot r-cran-catools r-cran-chron r-cran-class r-cran-cluster r-cran-coda r-cran-codetools r-cran-colorspace r-cran-combinat r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-deldir r-cran-dichromat r-cran-digest r-cran-distory r-cran-doparallel r-cran-dplyr r-cran-ellipse r-cran-evaluate r-cran-fastcluster r-cran-fastmatch r-cran-fields r-cran-foreach r-cran-foreign r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-g.data r-cran-gam r-cran-gdata r-cran-genabel r-cran-genabel.data r-cran-getopt r-cran-ggplot2 r-cran-glmnet r-cran-globals r-cran-gmodels r-cran-googlevis r-cran-gplots r-cran-gridbase r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-igraph r-cran-inline r-cran-irlba r-cran-iterators r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-learnbayes r-cran-listenv r-cran-littler r-cran-luminescence r-cran-magrittr r-cran-maps r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-minpack.lm r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nmf r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-optparse r-cran-permute r-cran-phangorn r-cran-phylobase r-cran-pkgkitten r-cran-pkgmaker r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-progress r-cran-pscbs r-cran-qtl r-cran-quadprog r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-randomforest r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl r-cran-rcurl r-cran-readxl r-cran-registry r-cran-rentrez r-cran-reshape r-cran-reshape2 r-cran-rgl r-cran-ritis r-cran-rlumshiny r-cran-rncl r-cran-rnexml r-cran-rngtools r-cran-rocr r-cran-rotl r-cran-rpart r-cran-rredlist r-cran-rsqlite r-cran-scales r-cran-scatterd3 r-cran-segmented r-cran-seqinr r-cran-shape r-cran-shiny r-cran-shinybs r-cran-snow r-cran-solrium r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatial r-cran-spdep r-cran-stringi r-cran-stringr r-cran-survival r-cran-taxize r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-treescape r-cran-uuid r-cran-vegan r-cran-viridis r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml r-cran-zoo r-doc-html r-mathlib r-other-mott-happy.hbrem r-recommended rake rambo-k rapmap rasmol raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-classifier-doc rdp-readseq readline-common readseq reapr relion-bin+gui rename repeatmasker-recon reprof rhino rna-star rnahybrid roary rsem rsync rtax ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration saint salmon samtools science-biology science-config science-tasks scrm scythe seaview seer seqan-apps seqprep seqtk sga sgml-base shared-mime-info sibsim4 sickle sigma-align sim4 sim4db smalt smithwaterman smrtanalysis snap snap-aligner sniffles snp-sites snpomatic soapdenovo soapdenovo2 sortmerna spaced spades sphinx-common sphinx-rtd-theme-common sprai spread-phy sqlite3 squizz sra-toolkit srst2 ssake ssl-cert sspace ssw-align stacks staden staden-common staden-io-lib-utils subread suitename sumaclust sumatra sumtrees surankco swarm swi-prolog swi-prolog-nox swi-prolog-x sysstat t-coffee t1utils tabix tantan tasksel tasksel-data tcl tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc texlive-science texlive-science-doc theseus tigr-glimmer time tipa tk tk8.6 tk8.6-blt2.5 tklib tm-align tophat toppred transdecoder transrate-tools transtermhp tree-puzzle tree-puzzle-doc treeview treeviewx trimmomatic trinityrnaseq trinityrnaseq-examples ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-liberation tzdata uc-echo ucf unzip varna vcftools velvet velvetoptimiser vsearch wigeon wise wise-data x11-common x11-utils x11-xserver-utils xauth xbitmaps xdg-user-dirs xdg-utils xfonts-100dpi xfonts-encodings xfonts-utils xkb-data xml-core xsltproc xterm xz-utils zalign zip zlib1g-dev 0 upgraded, 2020 newly installed, 0 to remove and 0 not upgraded. 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http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-common all 2.36.5-2+deb9u2 [311 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-0 amd64 2.36.5-2+deb9u2 [170 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-common all 2.24.31-2 [2693 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libavahi-common-data amd64 0.6.32-2 [118 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 hicolor-icon-theme all 0.15-1 [9550 B] Get:124 http://deb.debian.org/debian stretch/main amd64 gtk-update-icon-cache amd64 3.22.11-1 [76.6 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 libcroco3 amd64 0.6.11-3 [143 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 librsvg2-2 amd64 2.40.16-1+b1 [281 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 librsvg2-common amd64 2.40.16-1+b1 [194 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 gnome-icon-theme all 3.12.0-2 [9890 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 adwaita-icon-theme all 3.22.0-1+deb9u1 [11.5 MB] Get:130 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-0 amd64 2.24.31-2 [1800 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libglade2-0 amd64 1:2.6.4-2 [81.8 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 liblqr-1-0 amd64 0.4.2-2+b2 [24.8 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 libfftw3-double3 amd64 3.3.5-3 [731 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 libopenjp2-7 amd64 2.1.2-1.1+deb9u4 [122 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 imagemagick-6-common all 8:6.9.7.4+dfsg-11+deb9u8 [185 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 libmagickcore-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [1743 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 libmagickwand-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [423 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 libmotif-common all 2.3.4-13 [28.4 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 libogg0 amd64 1.3.2-1 [19.9 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 libpcrecpp0v5 amd64 2:8.39-3 [151 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 libdouble-conversion1 amd64 2.0.1-4 [33.7 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 libpcre16-3 amd64 2:8.39-3 [258 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 libqt5core5a amd64 5.7.1+dfsg-3+deb9u2 [1839 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 libdrm2 amd64 2.4.74-1 [36.2 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 libwayland-client0 amd64 1.12.0-1+deb9u1 [25.1 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 libwayland-server0 amd64 1.12.0-1+deb9u1 [30.6 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 libgbm1 amd64 13.0.6-1+b2 [59.2 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:155 http://deb.debian.org/debian stretch/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 libxcb-xfixes0 amd64 1.12-1 [99.6 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:158 http://deb.debian.org/debian stretch/main amd64 libegl1-mesa amd64 13.0.6-1+b2 [112 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libevdev2 amd64 1.5.6+dfsg-1 [30.0 kB] Get:164 http://deb.debian.org/debian stretch/main amd64 libmtdev1 amd64 1.1.5-1+b1 [22.3 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libgudev-1.0-0 amd64 230-3 [12.9 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libwacom-common all 0.22-1 [31.3 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 libwacom2 amd64 0.22-1+b1 [18.0 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libinput-bin amd64 1.6.3-1 [11.1 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libinput10 amd64 1.6.3-1 [75.7 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 libqt5dbus5 amd64 5.7.1+dfsg-3+deb9u2 [217 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 libproxy1v5 amd64 0.4.14-2 [57.4 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 libqt5network5 amd64 5.7.1+dfsg-3+deb9u2 [593 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 libxcb-icccm4 amd64 0.4.1-1 [27.0 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 libxcb-randr0 amd64 1.12-1 [107 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 libxcb-render-util0 amd64 0.3.9-1 [18.0 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libxcb-xinerama0 amd64 1.12-1 [95.5 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libxcb-xkb1 amd64 1.12-1 [120 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 xkb-data all 2.19-1+deb9u1 [650 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 libxkbcommon0 amd64 0.7.1-2~deb9u1 [122 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 libxkbcommon-x11-0 amd64 0.7.1-2~deb9u1 [39.1 kB] Get:185 http://deb.debian.org/debian stretch/main amd64 libqt5gui5 amd64 5.7.1+dfsg-3+deb9u2 [2449 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 libqt5widgets5 amd64 5.7.1+dfsg-3+deb9u2 [2242 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libqt5svg5 amd64 5.7.1~20161021-2+b2 [130 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 libxm4 amd64 2.3.4-13 [1017 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 lua-md5 amd64 1.2+git+1+8d87fee-1 [13.1 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4 [32.4 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4 [63.2 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libboost-iostreams1.62.0 amd64 1.62.0+dfsg-4 [50.8 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-4 [288 kB] Get:197 http://deb.debian.org/debian stretch/main amd64 libboost-thread1.62.0 amd64 1.62.0+dfsg-4 [71.5 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 mira-assembler amd64 4.9.6-2 [2282 kB] Get:199 http://deb.debian.org/debian stretch/main amd64 mira-rfam-12s-rrna all 4.9.6-2 [10.4 MB] Get:200 http://deb.debian.org/debian stretch/main amd64 poppler-data all 0.4.7-8 [1451 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 libpython3.5-minimal amd64 3.5.3-1+deb9u1 [573 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 python3.5-minimal amd64 3.5.3-1+deb9u1 [1691 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 python3-minimal amd64 3.5.3-1 [35.3 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libpython3.5-stdlib amd64 3.5.3-1+deb9u1 [2167 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 python3.5 amd64 3.5.3-1+deb9u1 [229 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libpython3-stdlib amd64 3.5.3-1 [18.6 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 dh-python all 2.20170125 [86.8 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 python3 amd64 3.5.3-1 [21.6 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-metadata all 11-3 [7188 B] Get:213 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-tablesorter all 11-3 [43.9 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 libjs-twitter-bootstrap all 2.0.2+dfsg-10 [98.8 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-1 [31.5 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 dmidecode amd64 3.0-4 [68.3 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 libassuan0 amd64 2.4.3-2 [42.5 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 libnpth0 amd64 1.3-1 [14.6 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get:223 http://deb.debian.org/debian stretch/main amd64 gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 libpopt0 amd64 1.16-10+b2 [49.4 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 libslang2 amd64 2.3.1-5 [503 kB] Get:226 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:232 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 gettext-base amd64 0.19.8.1-2+deb9u1 [122 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:235 http://deb.debian.org/debian stretch/main amd64 libcap2 amd64 1:2.25-1 [16.8 kB] Get:236 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libgc1c2 amd64 1:7.4.2-8 [208 kB] Get:238 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:239 http://deb.debian.org/debian stretch/main amd64 libwrap0 amd64 7.6.q-26 [58.2 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 manpages all 4.10-2 [1222 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 openssh-client amd64 1:7.4p1-10+deb9u7 [780 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:243 http://deb.debian.org/debian stretch/main amd64 mummer amd64 3.23+dfsg-2 [809 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 abacas all 1.3.1-3 [23.9 kB] Get:245 http://deb.debian.org/debian stretch/main amd64 make amd64 4.1-9.1 [302 kB] Get:246 http://deb.debian.org/debian stretch/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:248 http://deb.debian.org/debian stretch/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:249 http://deb.debian.org/debian stretch/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:250 http://deb.debian.org/debian stretch/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:251 http://deb.debian.org/debian stretch/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:252 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:254 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:255 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:256 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:257 http://deb.debian.org/debian stretch/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:258 http://deb.debian.org/debian stretch/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:259 http://deb.debian.org/debian stretch/main amd64 libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:260 http://deb.debian.org/debian stretch/main amd64 abyss amd64 2.0.2-2 [1388 kB] Get:261 http://deb.debian.org/debian stretch/main amd64 adapterremoval amd64 2.2.0-1 [202 kB] Get:262 http://deb.debian.org/debian stretch/main amd64 gnustep-common amd64 2.6.8-2.1 [115 kB] Get:263 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:264 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:265 http://deb.debian.org/debian stretch/main amd64 gnustep-base-common all 1.24.9-3.1+deb9u1 [254 kB] Get:266 http://deb.debian.org/debian stretch/main amd64 libobjc4 amd64 6.3.0-18+deb9u1 [49.5 kB] Get:267 http://deb.debian.org/debian stretch/main amd64 libxslt1.1 amd64 1.1.29-2.1+deb9u2 [233 kB] Get:268 http://deb.debian.org/debian stretch/main amd64 libgnustep-base1.24 amd64 1.24.9-3.1+deb9u1 [1276 kB] Get:269 http://deb.debian.org/debian stretch/main amd64 libgsl2 amd64 2.3+dfsg-1 [893 kB] Get:270 http://deb.debian.org/debian stretch/main amd64 adun-core amd64 0.81-9+b2 [757 kB] Get:271 http://deb.debian.org/debian stretch/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:272 http://deb.debian.org/debian stretch/main amd64 libtre5 amd64 0.8.0-6 [58.5 kB] Get:273 http://deb.debian.org/debian stretch/main amd64 lua-filesystem amd64 1.6.3-1 [10.3 kB] Get:274 http://deb.debian.org/debian stretch/main amd64 lua-lpeg amd64 1.0.0-1 [30.4 kB] Get:275 http://deb.debian.org/debian stretch/main amd64 libpth20 amd64 2.0.7-20+b2 [78.5 kB] Get:276 http://deb.debian.org/debian stretch/main amd64 genometools-common all 1.5.9+ds-4 [171 kB] Get:277 http://deb.debian.org/debian stretch/main amd64 libgenometools0 amd64 1.5.9+ds-4 [1775 kB] Get:278 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-datatables all 1.10.13+dfsg-2 [135 kB] Get:279 http://deb.debian.org/debian stretch/main amd64 libjs-mootools all 1.4.5~debian1-2.1 [242 kB] Get:280 http://deb.debian.org/debian stretch/main amd64 aegean amd64 0.15.2+dfsg-1 [199 kB] Get:281 http://deb.debian.org/debian stretch/main amd64 aevol amd64 4.4-1+b4 [426 kB] Get:282 http://deb.debian.org/debian stretch/main amd64 libnspr4 amd64 2:4.12-6 [117 kB] Get:283 http://deb.debian.org/debian stretch/main amd64 libnss3 amd64 2:3.26.2-1.1+deb9u1 [1161 kB] Get:284 http://deb.debian.org/debian stretch/main amd64 ca-certificates-java all 20170929~deb9u3 [15.1 kB] Get:285 http://deb.debian.org/debian stretch/main amd64 java-common all 0.58+deb9u1 [13.6 kB] Get:286 http://deb.debian.org/debian stretch/main amd64 libpcsclite1 amd64 1.8.20-1 [56.5 kB] Get:287 http://deb.debian.org/debian stretch/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:288 http://deb.debian.org/debian stretch/main amd64 openjdk-8-jre-headless amd64 8u252-b09-1~deb9u1 [27.4 MB] Get:289 http://deb.debian.org/debian stretch/main amd64 default-jre-headless amd64 2:1.8-58+deb9u1 [10.1 kB] Get:290 http://deb.debian.org/debian stretch/main amd64 libatspi2.0-0 amd64 2.22.0-6+deb9u1 [60.9 kB] Get:291 http://deb.debian.org/debian stretch/main amd64 libatk-bridge2.0-0 amd64 2.22.0-2 [56.3 kB] Get:292 http://deb.debian.org/debian stretch/main amd64 libcairo-gobject2 amd64 1.14.8-1 [336 kB] Get:293 http://deb.debian.org/debian stretch/main amd64 libdconf1 amd64 0.26.0-2+b1 [37.6 kB] Get:294 http://deb.debian.org/debian stretch/main amd64 dconf-service amd64 0.26.0-2+b1 [34.7 kB] Get:295 http://deb.debian.org/debian stretch/main amd64 dconf-gsettings-backend amd64 0.26.0-2+b1 [26.4 kB] Get:296 http://deb.debian.org/debian stretch/main amd64 libgtk-3-common all 3.22.11-1 [3416 kB] Get:297 http://deb.debian.org/debian stretch/main amd64 libcolord2 amd64 1.3.3-2 [252 kB] Get:298 http://deb.debian.org/debian stretch/main amd64 libepoxy0 amd64 1.3.1-2 [176 kB] Get:299 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-common all 1.2.6-1 [166 kB] Get:300 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-0 amd64 1.2.6-1 [178 kB] Get:301 http://deb.debian.org/debian stretch/main amd64 glib-networking-common all 2.50.0-1+deb9u1 [49.2 kB] Get:302 http://deb.debian.org/debian stretch/main amd64 glib-networking-services amd64 2.50.0-1+deb9u1 [12.2 kB] Get:303 http://deb.debian.org/debian stretch/main amd64 gsettings-desktop-schemas all 3.22.0-1 [473 kB] Get:304 http://deb.debian.org/debian stretch/main amd64 glib-networking amd64 2.50.0-1+deb9u1 [57.0 kB] Get:305 http://deb.debian.org/debian stretch/main amd64 libsoup2.4-1 amd64 2.56.0-2+deb9u2 [296 kB] Get:306 http://deb.debian.org/debian stretch/main amd64 libsoup-gnome2.4-1 amd64 2.56.0-2+deb9u2 [16.4 kB] Get:307 http://deb.debian.org/debian stretch/main amd64 librest-0.7-0 amd64 0.8.0-2 [33.0 kB] Get:308 http://deb.debian.org/debian stretch/main amd64 libwayland-cursor0 amd64 1.12.0-1+deb9u1 [13.5 kB] Get:309 http://deb.debian.org/debian stretch/main amd64 libwayland-egl1-mesa amd64 13.0.6-1+b2 [43.0 kB] Get:310 http://deb.debian.org/debian stretch/main amd64 libgtk-3-0 amd64 3.22.11-1 [2529 kB] Get:311 http://deb.debian.org/debian stretch/main amd64 libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:312 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:313 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:314 http://deb.debian.org/debian stretch/main amd64 libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:315 http://deb.debian.org/debian stretch/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:316 http://deb.debian.org/debian stretch/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:317 http://deb.debian.org/debian stretch/main amd64 x11-utils amd64 7.7+3+b1 [202 kB] Get:318 http://deb.debian.org/debian stretch/main amd64 libatk-wrapper-java all 0.33.3-13+deb9u1 [44.1 kB] Get:319 http://deb.debian.org/debian stretch/main amd64 libatk-wrapper-java-jni amd64 0.33.3-13+deb9u1 [37.5 kB] Get:320 http://deb.debian.org/debian stretch/main amd64 libasound2-data all 1.1.3-5 [173 kB] Get:321 http://deb.debian.org/debian stretch/main amd64 libasound2 amd64 1.1.3-5 [497 kB] Get:322 http://deb.debian.org/debian stretch/main amd64 libgif7 amd64 5.1.4-0.4 [43.1 kB] Get:323 http://deb.debian.org/debian stretch/main amd64 libasyncns0 amd64 0.8-6 [12.5 kB] Get:324 http://deb.debian.org/debian stretch/main amd64 libflac8 amd64 1.3.2-1 [221 kB] Get:325 http://deb.debian.org/debian stretch/main amd64 libvorbis0a amd64 1.3.5-4+deb9u2 [91.7 kB] Get:326 http://deb.debian.org/debian stretch/main amd64 libvorbisenc2 amd64 1.3.5-4+deb9u2 [79.4 kB] Get:327 http://deb.debian.org/debian stretch/main amd64 libsndfile1 amd64 1.0.27-3 [248 kB] Get:328 http://deb.debian.org/debian stretch/main amd64 libpulse0 amd64 10.0-1+deb9u1 [283 kB] Get:329 http://deb.debian.org/debian stretch/main amd64 openjdk-8-jre amd64 8u252-b09-1~deb9u1 [69.8 kB] Get:330 http://deb.debian.org/debian stretch/main amd64 default-jre amd64 2:1.8-58+deb9u1 [930 B] Get:331 http://deb.debian.org/debian stretch/main amd64 libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get:332 http://deb.debian.org/debian stretch/main amd64 libcommons-pool-java all 1.6-3 [104 kB] Get:333 http://deb.debian.org/debian stretch/main amd64 libcommons-collections3-java all 3.2.2-1 [599 kB] Get:334 http://deb.debian.org/debian stretch/main amd64 libcommons-dbcp-java all 1.4-5 [155 kB] Get:335 http://deb.debian.org/debian stretch/main amd64 libservlet3.1-java all 8.5.54-0+deb9u1 [403 kB] Get:336 http://deb.debian.org/debian stretch/main amd64 libhsqldb-java all 2.3.4-1 [1502 kB] Get:337 http://deb.debian.org/debian stretch/main amd64 libbiojava1.7-java all 1:1.7.1-5 [3160 kB] Get:338 http://deb.debian.org/debian stretch/main amd64 libbiojava-java all 1:1.7.1-5 [48.4 kB] Get:339 http://deb.debian.org/debian stretch/main amd64 libcommons-cli-java all 1.3.1-3 [55.2 kB] Get:340 http://deb.debian.org/debian stretch/main amd64 alien-hunter all 1.7-5 [28.4 kB] Get:341 http://deb.debian.org/debian stretch/main amd64 alter-sequence-alignment amd64 1.3.3+dfsg-1 [223 kB] Get:342 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:343 http://deb.debian.org/debian stretch/main amd64 libatlas3-base amd64 3.10.3-1+b1 [3048 kB] Get:344 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:345 http://deb.debian.org/debian stretch/main amd64 libopenblas-base amd64 0.2.19-3 [3793 kB] Get:346 http://deb.debian.org/debian stretch/main amd64 libtamuanova-0.2 amd64 0.2-4 [7610 B] Get:347 http://deb.debian.org/debian stretch/main amd64 libmath-tamuanova-perl amd64 1.0.2-2+b4 [13.5 kB] Get:348 http://deb.debian.org/debian stretch/main amd64 altree amd64 1.3.1-4+b2 [338 kB] Get:349 http://deb.debian.org/debian stretch/main amd64 amap-align amd64 2.2-6 [129 kB] Get:350 http://deb.debian.org/debian stretch/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:351 http://deb.debian.org/debian stretch/main amd64 andi amd64 0.10-2 [466 kB] Get:352 http://deb.debian.org/debian stretch/main amd64 libelf1 amd64 0.168-1 [157 kB] Get:353 http://deb.debian.org/debian stretch/main amd64 libelk0 amd64 3.99.8-4.1+b1 [166 kB] Get:354 http://deb.debian.org/debian stretch/main amd64 libprotobuf10 amd64 3.0.0-9 [681 kB] Get:355 http://deb.debian.org/debian stretch/main amd64 libanfo0 amd64 0.98-5 [272 kB] Get:356 http://deb.debian.org/debian stretch/main amd64 anfo amd64 0.98-5 [116 kB] Get:357 http://deb.debian.org/debian stretch/main amd64 ant all 1.9.9-1+deb9u1 [1923 kB] Get:358 http://deb.debian.org/debian stretch/main amd64 ant-optional all 1.9.9-1+deb9u1 [350 kB] Get:359 http://deb.debian.org/debian stretch/main amd64 libmaloc1 amd64 0.2-3.1 [49.3 kB] Get:360 http://deb.debian.org/debian stretch/main amd64 apbs amd64 1.4-1+b1 [218 kB] Get:361 http://deb.debian.org/debian stretch/main amd64 aragorn amd64 1.2.38-1 [86.0 kB] Get:362 http://deb.debian.org/debian stretch/main amd64 python-decorator all 4.0.11-1 [13.3 kB] Get:363 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:364 http://deb.debian.org/debian stretch/main amd64 python-numpy amd64 1:1.12.1-3 [1936 kB] Get:365 http://deb.debian.org/debian stretch/main amd64 python-scipy amd64 0.18.1-2 [8933 kB] Get:366 http://deb.debian.org/debian stretch/main amd64 python-htseq amd64 0.6.1p1-4 [188 kB] Get:367 http://deb.debian.org/debian stretch/main amd64 python-six all 1.10.0-3 [14.4 kB] Get:368 http://deb.debian.org/debian stretch/main amd64 python-dateutil all 2.5.3-2 [51.3 kB] Get:369 http://deb.debian.org/debian stretch/main amd64 fonts-lyx all 2.2.2-1 [197 kB] Get:370 http://deb.debian.org/debian stretch/main amd64 python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB] Get:371 http://deb.debian.org/debian stretch/main amd64 python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB] Get:372 http://deb.debian.org/debian stretch/main amd64 python-tz all 2016.7-0.3 [33.7 kB] Get:373 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB] Get:374 http://deb.debian.org/debian stretch/main amd64 python-cycler all 0.10.0-1 [7448 B] Get:375 http://deb.debian.org/debian stretch/main amd64 python-functools32 all 3.2.3.2-3 [11.0 kB] Get:376 http://deb.debian.org/debian stretch/main amd64 python-subprocess32 amd64 3.2.7-2 [28.9 kB] Get:377 http://deb.debian.org/debian stretch/main amd64 python-matplotlib amd64 2.0.0+dfsg1-2 [1598 kB] Get:378 http://deb.debian.org/debian stretch/main amd64 arden all 1.0-3 [88.7 kB] Get:379 http://deb.debian.org/debian stretch/main amd64 python3-pkg-resources all 33.1.1-1 [137 kB] Get:380 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:381 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:382 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:383 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:384 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:385 http://deb.debian.org/debian stretch/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:386 http://deb.debian.org/debian stretch/main amd64 libhts1 amd64 1.3.2-2 [257 kB] Get:387 http://deb.debian.org/debian stretch/main amd64 samtools amd64 1.3.1-3 [254 kB] Get:388 http://deb.debian.org/debian stretch/main amd64 fastaq all 3.14.0-1 [46.6 kB] Get:389 http://deb.debian.org/debian stretch/main amd64 python3-dendropy all 4.2.0+dfsg-1 [7494 kB] Get:390 http://deb.debian.org/debian stretch/main amd64 python3-pymummer all 0.10.1-1 [8872 B] Get:391 http://deb.debian.org/debian stretch/main amd64 python3-pysam amd64 0.10.0+ds-2 [1299 kB] Get:392 http://deb.debian.org/debian stretch/main amd64 libfml0 amd64 0.1-2+b1 [68.7 kB] Get:393 http://deb.debian.org/debian stretch/main amd64 libminimap0 amd64 0.2-3+b1 [22.6 kB] Get:394 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:395 http://deb.debian.org/debian stretch/main amd64 libtbb2 amd64 4.3~20150611-2 [136 kB] Get:396 http://deb.debian.org/debian stretch/main amd64 bowtie2 amd64 2.3.0-2 [1166 kB] Get:397 http://deb.debian.org/debian stretch/main amd64 cd-hit amd64 4.6.6-2 [852 kB] Get:398 http://deb.debian.org/debian stretch/main amd64 libcapnp-0.5.3 amd64 0.5.3-2 [584 kB] Get:399 http://deb.debian.org/debian stretch/main amd64 mash amd64 1.1.1-2 [126 kB] Get:400 http://deb.debian.org/debian stretch/main amd64 ariba amd64 2.6.1+ds-1 [104 kB] Get:401 http://deb.debian.org/debian stretch/main amd64 art-nextgen-simulation-tools amd64 20160605+dfsg-2 [1757 kB] Get:402 http://deb.debian.org/debian stretch/main amd64 binfmt-support amd64 2.1.6-2 [59.5 kB] Get:403 http://deb.debian.org/debian stretch/main amd64 fastjar amd64 2:0.98-6+b1 [81.0 kB] Get:404 http://deb.debian.org/debian stretch/main amd64 jarwrapper all 0.59 [17.9 kB] Get:405 http://deb.debian.org/debian stretch/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:406 http://deb.debian.org/debian stretch/main amd64 libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:407 http://deb.debian.org/debian stretch/main amd64 libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:408 http://deb.debian.org/debian stretch/main amd64 mysql-common all 5.8+1.0.2 [5608 B] Get:409 http://deb.debian.org/debian stretch/main amd64 libmariadbclient18 amd64 10.1.45-0+deb9u1 [785 kB] Get:410 http://deb.debian.org/debian stretch/main amd64 libpq5 amd64 9.6.17-0+deb9u1 [137 kB] Get:411 http://deb.debian.org/debian stretch/main amd64 emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:412 http://deb.debian.org/debian stretch/main amd64 emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:413 http://deb.debian.org/debian stretch/main amd64 emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:414 http://deb.debian.org/debian stretch/main amd64 jemboss all 6.6.0+dfsg-6 [3796 kB] Get:415 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:416 http://deb.debian.org/debian stretch/main amd64 java-wrappers all 0.1.28 [10.7 kB] Get:417 http://deb.debian.org/debian stretch/main amd64 libapache-pom-java all 10-2 [3870 B] Get:418 http://deb.debian.org/debian stretch/main amd64 libbsf-java all 1:2.4.0-5 [72.2 kB] Get:419 http://deb.debian.org/debian stretch/main amd64 libcommons-parent-java all 39-3 [9350 B] Get:420 http://deb.debian.org/debian stretch/main amd64 libcommons-io-java all 2.5-1 [206 kB] Get:421 http://deb.debian.org/debian stretch/main amd64 libcommons-logging-java all 1.2-1 [62.1 kB] Get:422 http://deb.debian.org/debian stretch/main amd64 libjaxp1.3-java all 1.3.05-2 [450 kB] Get:423 http://deb.debian.org/debian stretch/main amd64 libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB] Get:424 http://deb.debian.org/debian stretch/main amd64 libxml-commons-external-java all 1.4.01-2 [245 kB] Get:425 http://deb.debian.org/debian stretch/main amd64 libxerces2-java all 2.11.0-7 [1365 kB] Get:426 http://deb.debian.org/debian stretch/main amd64 libxalan2-java all 2.7.1-9 [3169 kB] Get:427 http://deb.debian.org/debian stretch/main amd64 libxmlgraphics-commons-java all 2.1-2 [590 kB] Get:428 http://deb.debian.org/debian stretch/main amd64 libbatik-java all 1.8-4+deb9u2 [2893 kB] Get:429 http://deb.debian.org/debian stretch/main amd64 libcommons-lang3-java all 3.5-1 [437 kB] Get:430 http://deb.debian.org/debian stretch/main amd64 libcommons-net-java all 3.5-1 [281 kB] Get:431 http://deb.debian.org/debian stretch/main amd64 libcommons-compress-java all 1.13-1 [430 kB] Get:432 http://deb.debian.org/debian stretch/main amd64 libcommons-jexl2-java all 2.1.1-3 [246 kB] Get:433 http://deb.debian.org/debian stretch/main amd64 libngs-sdk1 amd64 1.3.0-2 [51.2 kB] Get:434 http://deb.debian.org/debian stretch/main amd64 libngs-sdk-dev amd64 1.3.0-2 [92.4 kB] Get:435 http://deb.debian.org/debian stretch/main amd64 libngs-java amd64 1.3.0-2 [71.1 kB] Get:436 http://deb.debian.org/debian stretch/main amd64 libsnappy1v5 amd64 1.1.3-3 [51.0 kB] Get:437 http://deb.debian.org/debian stretch/main amd64 libsnappy-jni amd64 1.1.2.6-1 [6808 B] Get:438 http://deb.debian.org/debian stretch/main amd64 libsnappy-java all 1.1.2.6-1 [65.9 kB] Get:439 http://deb.debian.org/debian stretch/main amd64 libxz-java all 1.6-1 [128 kB] Get:440 http://deb.debian.org/debian stretch/main amd64 libhtsjdk-java all 2.8.1+dfsg-1 [1438 kB] Get:441 http://deb.debian.org/debian stretch/main amd64 libibatis-java all 2.3.4.726-6 [339 kB] Get:442 http://deb.debian.org/debian stretch/main amd64 libj2ssh-java all 0.2.9-4 [740 kB] Get:443 http://deb.debian.org/debian stretch/main amd64 liblog4j1.2-java all 1.2.17-7+deb9u1 [431 kB] Get:444 http://deb.debian.org/debian stretch/main amd64 libatinject-jsr330-api-java all 1.0+ds1-2 [22.7 kB] Get:445 http://deb.debian.org/debian stretch/main amd64 libjsr305-java all 0.1~+svn49-10 [26.5 kB] Get:446 http://deb.debian.org/debian stretch/main amd64 libguava-java all 19.0-1 [2028 kB] Get:447 http://deb.debian.org/debian stretch/main amd64 libpicard-java all 2.8.1+dfsg-1 [1190 kB] Get:448 http://deb.debian.org/debian stretch/main amd64 libpostgresql-jdbc-java all 9.4.1212-1 [629 kB] Get:449 http://deb.debian.org/debian stretch/main amd64 artemis all 16.0.17+dfsg-1 [2622 kB] Get:450 http://deb.debian.org/debian stretch/main amd64 artfastqgenerator all 0.0.20150519-2 [40.2 kB] Get:451 http://deb.debian.org/debian stretch/main amd64 at-spi2-core amd64 2.22.0-6+deb9u1 [69.3 kB] Get:452 http://deb.debian.org/debian stretch/main amd64 libfile-which-perl all 1.21-1 [14.3 kB] Get:453 http://deb.debian.org/debian stretch/main amd64 leaff amd64 0~20150903+r2013-3 [71.3 kB] Get:454 http://deb.debian.org/debian stretch/main amd64 meryl amd64 0~20150903+r2013-3 [194 kB] Get:455 http://deb.debian.org/debian stretch/main amd64 aglfn all 1.7-3 [29.2 kB] Get:456 http://deb.debian.org/debian stretch/main amd64 gnuplot-data all 5.0.5+dfsg1-6+deb9u1 [127 kB] Get:457 http://deb.debian.org/debian stretch/main amd64 libqt5printsupport5 amd64 5.7.1+dfsg-3+deb9u2 [199 kB] Get:458 http://deb.debian.org/debian stretch/main amd64 libwxbase3.0-0v5 amd64 3.0.2+dfsg-4 [1073 kB] Get:459 http://deb.debian.org/debian stretch/main amd64 libnotify4 amd64 0.7.7-2 [21.9 kB] Get:460 http://deb.debian.org/debian stretch/main amd64 libwxgtk3.0-0v5 amd64 3.0.2+dfsg-4 [4493 kB] Get:461 http://deb.debian.org/debian stretch/main amd64 gnuplot-qt amd64 5.0.5+dfsg1-6+deb9u1 [1038 kB] Get:462 http://deb.debian.org/debian stretch/main amd64 gnuplot all 5.0.5+dfsg1-6+deb9u1 [70.8 kB] Get:463 http://deb.debian.org/debian stretch/main amd64 atac amd64 0~20150903+r2013-3 [383 kB] Get:464 http://deb.debian.org/debian stretch/main amd64 libbamtools2.4.0 amd64 2.4.1+dfsg-1 [190 kB] Get:465 http://deb.debian.org/debian stretch/main amd64 augustus-data all 3.2.3+dfsg-1 [14.9 MB] Get:466 http://deb.debian.org/debian stretch/main amd64 augustus amd64 3.2.3+dfsg-1 [1110 kB] Get:467 http://deb.debian.org/debian stretch/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:468 http://deb.debian.org/debian stretch/main amd64 autoconf all 2.69-10 [338 kB] Get:469 http://deb.debian.org/debian stretch/main amd64 autodock amd64 4.2.6-3+b1 [160 kB] Get:470 http://deb.debian.org/debian stretch/main amd64 autogrid amd64 4.2.6-3+b1 [48.3 kB] Get:471 http://deb.debian.org/debian stretch/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:472 http://deb.debian.org/debian stretch/main amd64 automake all 1:1.15-6 [733 kB] Get:473 http://deb.debian.org/debian stretch/main amd64 autopoint all 0.19.8.1-2+deb9u1 [433 kB] Get:474 http://deb.debian.org/debian stretch/main amd64 libqes0 amd64 0.2.7-1 [15.0 kB] Get:475 http://deb.debian.org/debian stretch/main amd64 axe-demultiplexer amd64 0.3.2+dfsg1-1 [213 kB] Get:476 http://deb.debian.org/debian stretch/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-4 [36.0 kB] Get:477 http://deb.debian.org/debian stretch/main amd64 libboost-date-time1.62.0 amd64 1.62.0+dfsg-4 [42.9 kB] Get:478 http://deb.debian.org/debian stretch/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-4 [125 kB] Get:479 http://deb.debian.org/debian stretch/main amd64 libfftw3-single3 amd64 3.3.5-3 [776 kB] Get:480 http://deb.debian.org/debian stretch/main amd64 libpython2.7 amd64 2.7.13-2+deb9u3 [1071 kB] Get:481 http://deb.debian.org/debian stretch/main amd64 qtcore4-l10n all 4:4.8.7+dfsg-11 [662 kB] Get:482 http://deb.debian.org/debian stretch/main amd64 libqtcore4 amd64 4:4.8.7+dfsg-11 [1598 kB] Get:483 http://deb.debian.org/debian stretch/main amd64 libqt4-xml amd64 4:4.8.7+dfsg-11 [143 kB] Get:484 http://deb.debian.org/debian stretch/main amd64 libqtdbus4 amd64 4:4.8.7+dfsg-11 [232 kB] Get:485 http://deb.debian.org/debian stretch/main amd64 libqt4-network amd64 4:4.8.7+dfsg-11 [606 kB] Get:486 http://deb.debian.org/debian stretch/main amd64 libqt4-sql amd64 4:4.8.7+dfsg-11 [145 kB] Get:487 http://deb.debian.org/debian stretch/main amd64 libball1.4-data all 1.4.3~beta1-3 [28.7 MB] Get:488 http://deb.debian.org/debian stretch/main amd64 libball1.4 amd64 1.4.3~beta1-3 [3236 kB] Get:489 http://deb.debian.org/debian stretch/main amd64 libglew2.0 amd64 2.0.0-3+b1 [143 kB] Get:490 http://deb.debian.org/debian stretch/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:491 http://deb.debian.org/debian stretch/main amd64 libmng1 amd64 1.0.10+dfsg-3.1+b5 [211 kB] Get:492 http://deb.debian.org/debian stretch/main amd64 libqtgui4 amd64 4:4.8.7+dfsg-11 [4150 kB] Get:493 http://deb.debian.org/debian stretch/main amd64 libqt4-opengl amd64 4:4.8.7+dfsg-11 [346 kB] Get:494 http://deb.debian.org/debian stretch/main amd64 libqt4-test amd64 4:4.8.7+dfsg-11 [107 kB] Get:495 http://deb.debian.org/debian stretch/main amd64 libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:496 http://deb.debian.org/debian stretch/main amd64 libgstreamer1.0-0 amd64 1.10.4-1 [1962 kB] Get:497 http://deb.debian.org/debian stretch/main amd64 liborc-0.4-0 amd64 1:0.4.26-2 [140 kB] Get:498 http://deb.debian.org/debian stretch/main amd64 iso-codes all 3.75-1 [2389 kB] Get:499 http://deb.debian.org/debian stretch/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.10.4-1+deb9u1 [1646 kB] Get:500 http://deb.debian.org/debian stretch/main amd64 libqt4-xmlpatterns amd64 4:4.8.7+dfsg-11 [1138 kB] Get:501 http://deb.debian.org/debian stretch/main amd64 libqtwebkit4 amd64 2.3.4.dfsg-9.1 [8882 kB] Get:502 http://deb.debian.org/debian stretch/main amd64 libballview1.4 amd64 1.4.3~beta1-3 [1440 kB] Get:503 http://deb.debian.org/debian stretch/main amd64 python-ball amd64 1.4.3~beta1-3 [886 kB] Get:504 http://deb.debian.org/debian stretch/main amd64 python-ballview amd64 1.4.3~beta1-3 [226 kB] Get:505 http://deb.debian.org/debian stretch/main amd64 ballview amd64 1.4.3~beta1-3 [2518 kB] Get:506 http://deb.debian.org/debian stretch/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:507 http://deb.debian.org/debian stretch/main amd64 bamtools amd64 2.4.1+dfsg-1 [214 kB] Get:508 http://deb.debian.org/debian stretch/main amd64 hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:509 http://deb.debian.org/debian stretch/main amd64 barrnap all 0.7+dfsg-2 [192 kB] Get:510 http://deb.debian.org/debian stretch/main amd64 bc amd64 1.06.95-9+b3 [105 kB] Get:511 http://deb.debian.org/debian stretch/main amd64 bcftools amd64 1.3.1-1+b1 [335 kB] Get:512 http://deb.debian.org/debian stretch/main amd64 beagle all 4.1~160727-86a+dfsg-1 [361 kB] Get:513 http://deb.debian.org/debian stretch/main amd64 libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:514 http://deb.debian.org/debian stretch/main amd64 beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:515 http://deb.debian.org/debian stretch/main amd64 libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:516 http://deb.debian.org/debian stretch/main amd64 libhmsbeagle-java amd64 2.1.2+20160831-5 [24.2 kB] Get:517 http://deb.debian.org/debian stretch/main amd64 libhamcrest-java all 1.3-6 [378 kB] Get:518 http://deb.debian.org/debian stretch/main amd64 junit4 all 4.12-4 [286 kB] Get:519 http://deb.debian.org/debian stretch/main amd64 libconcurrent-java all 1.3.4-4 [133 kB] Get:520 http://deb.debian.org/debian stretch/main amd64 libcolt-free-java all 1.2.0+dfsg-4 [405 kB] Get:521 http://deb.debian.org/debian stretch/main amd64 libcommons-math-java all 2.2-6 [892 kB] Get:522 http://deb.debian.org/debian stretch/main amd64 libitext1-java all 1.4-6 [1194 kB] Get:523 http://deb.debian.org/debian stretch/main amd64 libjam-java all 0.1.20140824-2 [159 kB] Get:524 http://deb.debian.org/debian stretch/main amd64 libjaxen-java all 1.1.6-1+deb9u1 [205 kB] Get:525 http://deb.debian.org/debian stretch/main amd64 libjdom1-java all 1.1.3-1 [150 kB] Get:526 http://deb.debian.org/debian stretch/main amd64 libjebl2-java all 0.1+20140614-1 [496 kB] Get:527 http://deb.debian.org/debian stretch/main amd64 libcommons-codec-java all 1.10-1 [234 kB] Get:528 http://deb.debian.org/debian stretch/main amd64 libmpj-java all 0.44+dfsg-3 [439 kB] Get:529 http://deb.debian.org/debian stretch/main amd64 libmtj-java all 0.9.14+dfsg-4 [126 kB] Get:530 http://deb.debian.org/debian stretch/main amd64 libnucleotidelikelihoodcore0 amd64 1.8.4+dfsg.1-1 [8460 B] Get:531 http://deb.debian.org/debian stretch/main amd64 f2j amd64 0.8.1+dfsg-2 [160 kB] Get:532 http://deb.debian.org/debian stretch/main amd64 libf2j-java all 0.8.1+dfsg-2 [59.0 kB] Get:533 http://deb.debian.org/debian stretch/main amd64 libjlapack-java all 0.8~dfsg-3 [925 kB] Get:534 http://deb.debian.org/debian stretch/main amd64 libnetlib-java all 0.9.3-3 [192 kB] Get:535 http://deb.debian.org/debian stretch/main amd64 beast-mcmc all 1.8.4+dfsg.1-1 [7151 kB] Get:536 http://deb.debian.org/debian stretch/main amd64 beast2-mcmc all 2.4.4+dfsg-1 [1590 kB] Get:537 http://deb.debian.org/debian stretch/main amd64 bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:538 http://deb.debian.org/debian stretch/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4 [159 kB] Get:539 http://deb.debian.org/debian stretch/main amd64 berkeley-express amd64 1.5.1-3+b1 [234 kB] Get:540 http://deb.debian.org/debian stretch/main amd64 binutils amd64 2.28-5 [3770 kB] Get:541 http://deb.debian.org/debian stretch/main amd64 bio-eagle amd64 2.3-3 [219 kB] Get:542 http://deb.debian.org/debian stretch/main amd64 bio-rainbow amd64 2.0.4-1+b1 [48.3 kB] Get:543 http://deb.debian.org/debian stretch/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:544 http://deb.debian.org/debian stretch/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:545 http://deb.debian.org/debian stretch/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:546 http://deb.debian.org/debian stretch/main amd64 bioperl all 1.7.1-2 [422 kB] Get:547 http://deb.debian.org/debian stretch/main amd64 libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:548 http://deb.debian.org/debian stretch/main amd64 bioperl-run all 1.7.1-3 [44.2 kB] Get:549 http://deb.debian.org/debian stretch/main amd64 biosquid amd64 1.9g+cvs20050121-7 [188 kB] Get:550 http://deb.debian.org/debian stretch/main amd64 libaec0 amd64 0.3.2-1 [18.5 kB] Get:551 http://deb.debian.org/debian stretch/main amd64 libsz2 amd64 0.3.2-1 [5730 B] Get:552 http://deb.debian.org/debian stretch/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-3+deb9u1 [1282 kB] Get:553 http://deb.debian.org/debian stretch/main amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-3+deb9u1 [130 kB] Get:554 http://deb.debian.org/debian stretch/main amd64 libpbbam amd64 0.7.4+ds-1 [478 kB] Get:555 http://deb.debian.org/debian stretch/main amd64 libpbdata amd64 0~20161219-1 [129 kB] Get:556 http://deb.debian.org/debian stretch/main amd64 libpbihdf amd64 0~20161219-1 [167 kB] Get:557 http://deb.debian.org/debian stretch/main amd64 libblasr amd64 0~20161219-1 [867 kB] Get:558 http://deb.debian.org/debian stretch/main amd64 libpbseq all 0~20161219-1 [3876 B] Get:559 http://deb.debian.org/debian stretch/main amd64 blasr amd64 5.3+0-1 [691 kB] Get:560 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:561 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:562 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:563 http://deb.debian.org/debian stretch/main amd64 blast2 all 1:2.6.0-1 [9084 B] Get:564 http://deb.debian.org/debian stretch/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:565 http://deb.debian.org/debian stretch/main amd64 blends-common all 0.6.96 [23.3 kB] Get:566 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:567 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:568 http://deb.debian.org/debian stretch/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-3 [585 kB] Get:569 http://deb.debian.org/debian stretch/main amd64 blt amd64 2.5.3+dfsg-3 [14.6 kB] Get:570 http://deb.debian.org/debian stretch/main amd64 boxshade amd64 3.3.1-10 [54.4 kB] Get:571 http://deb.debian.org/debian stretch/main amd64 libcommons-lang-java all 2.6-6 [269 kB] Get:572 http://deb.debian.org/debian stretch/main amd64 libjargs-java all 1.0.0-4 [15.3 kB] Get:573 http://deb.debian.org/debian stretch/main amd64 cgview amd64 0.0.20100111-2 [586 kB] Get:574 http://deb.debian.org/debian stretch/main amd64 libswing-layout-java all 1.0.4-4 [51.3 kB] Get:575 http://deb.debian.org/debian stretch/main amd64 brig amd64 0.95+dfsg-1 [105 kB] Get:576 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:577 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:578 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:579 http://deb.debian.org/debian stretch/main amd64 libisl15 amd64 0.18-1 [564 kB] Get:580 http://deb.debian.org/debian stretch/main amd64 libmpc3 amd64 1.0.3-1+b2 [39.9 kB] Get:581 http://deb.debian.org/debian stretch/main amd64 cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:582 http://deb.debian.org/debian stretch/main amd64 cpp amd64 4:6.3.0-4 [18.7 kB] Get:583 http://deb.debian.org/debian stretch/main amd64 libcc1-0 amd64 6.3.0-18+deb9u1 [30.6 kB] Get:584 http://deb.debian.org/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:585 http://deb.debian.org/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:586 http://deb.debian.org/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:587 http://deb.debian.org/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:588 http://deb.debian.org/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:589 http://deb.debian.org/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:590 http://deb.debian.org/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:591 http://deb.debian.org/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:592 http://deb.debian.org/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:593 http://deb.debian.org/debian stretch/main amd64 gcc amd64 4:6.3.0-4 [5196 B] Get:594 http://deb.debian.org/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:595 http://deb.debian.org/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:596 http://deb.debian.org/debian stretch/main amd64 g++ amd64 4:6.3.0-4 [1546 B] Get:597 http://deb.debian.org/debian stretch/main amd64 libdpkg-perl all 1.18.25 [1287 kB] Get:598 http://deb.debian.org/debian stretch/main amd64 patch amd64 2.7.5-1+deb9u2 [112 kB] Get:599 http://deb.debian.org/debian stretch/main amd64 dpkg-dev all 1.18.25 [1595 kB] Get:600 http://deb.debian.org/debian stretch/main amd64 build-essential amd64 12.3 [7346 B] Get:601 http://deb.debian.org/debian stretch/main amd64 bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:602 http://deb.debian.org/debian stretch/main amd64 bzip2-doc all 1.0.6-8.1 [307 kB] Get:603 http://deb.debian.org/debian stretch/main amd64 libgflags2v5 amd64 2.1.2-4 [69.1 kB] Get:604 http://deb.debian.org/debian stretch/main amd64 libunwind8 amd64 1.1-4.1 [48.7 kB] Get:605 http://deb.debian.org/debian stretch/main amd64 libgoogle-glog0v5 amd64 0.3.4-2 [51.5 kB] Get:606 http://deb.debian.org/debian stretch/main amd64 libcassie1v5 amd64 1.0.5-1+b1 [38.2 kB] Get:607 http://deb.debian.org/debian stretch/main amd64 cassiopee amd64 1.0.5-1+b1 [13.7 kB] Get:608 http://deb.debian.org/debian stretch/main amd64 cdbfasta amd64 0.99-20100722-3 [55.5 kB] Get:609 http://deb.debian.org/debian stretch/main amd64 cdbs all 0.4.150 [82.6 kB] Get:610 http://deb.debian.org/debian stretch/main amd64 microbiomeutil-data all 20101212+dfsg1-1 [2242 kB] Get:611 http://deb.debian.org/debian stretch/main amd64 chimeraslayer all 20101212+dfsg1-1 [33.5 kB] Get:612 http://deb.debian.org/debian stretch/main amd64 python3-jdcal all 1.0-1.2~deb9u1 [7566 B] Get:613 http://deb.debian.org/debian stretch/main amd64 python3-lxml amd64 3.7.1-1 [900 kB] Get:614 http://deb.debian.org/debian stretch/main amd64 python3-openpyxl all 2.3.0-3 [198 kB] Get:615 http://deb.debian.org/debian stretch/main amd64 prodigal amd64 1:2.6.3-1+b1 [714 kB] Get:616 http://deb.debian.org/debian stretch/main amd64 libhat-trie0 amd64 0.0~git25f9e946-2 [10.7 kB] Get:617 http://deb.debian.org/debian stretch/main amd64 libjemalloc1 amd64 3.6.0-9.1 [89.8 kB] Get:618 http://deb.debian.org/debian stretch/main amd64 libnlopt0 amd64 2.4.2+dfsg-2+b2 [162 kB] Get:619 http://deb.debian.org/debian stretch/main amd64 libssw0 amd64 1.1-1+b1 [16.5 kB] Get:620 http://deb.debian.org/debian stretch/main amd64 python-joblib all 0.10.3+git55-g660fe5d-1 [115 kB] Get:621 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:622 http://deb.debian.org/debian stretch/main amd64 python-yaml amd64 3.12-1 [119 kB] Get:623 http://deb.debian.org/debian stretch/main amd64 spades amd64 3.9.1+dfsg-1 [3450 kB] Get:624 http://deb.debian.org/debian stretch/main amd64 circlator all 1.4.1-1 [4325 kB] Get:625 http://deb.debian.org/debian stretch/main amd64 fonts-circos-symbols all 0.69.4+dfsg-1 [45.8 kB] Get:626 http://deb.debian.org/debian stretch/main amd64 fonts-cmu all 0.7.0-3 [4874 kB] Get:627 http://deb.debian.org/debian stretch/main amd64 libregexp-common-perl all 2016060801-1 [178 kB] Get:628 http://deb.debian.org/debian stretch/main amd64 libcarp-always-perl all 0.12-1 [9142 B] Get:629 http://deb.debian.org/debian stretch/main amd64 libconfig-general-perl all 2.63-1 [70.5 kB] Get:630 http://deb.debian.org/debian stretch/main amd64 libdata-dumper-simple-perl all 0.11-5 [12.9 kB] Get:631 http://deb.debian.org/debian stretch/main amd64 libgd-perl amd64 2.53-3 [177 kB] Get:632 http://deb.debian.org/debian stretch/main amd64 libgetopt-simple-perl all 1.52-5 [14.4 kB] Get:633 http://deb.debian.org/debian stretch/main amd64 libmath-bezier-perl all 0.01-2 [6910 B] Get:634 http://deb.debian.org/debian stretch/main amd64 libmath-round-perl all 0.07-1 [10.6 kB] Get:635 http://deb.debian.org/debian stretch/main amd64 libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:636 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:637 http://deb.debian.org/debian stretch/main amd64 libtry-tiny-perl all 0.28-1 [22.7 kB] Get:638 http://deb.debian.org/debian stretch/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:639 http://deb.debian.org/debian stretch/main amd64 libparams-validate-perl amd64 1.26-1 [66.0 kB] Get:640 http://deb.debian.org/debian stretch/main amd64 libreadonly-perl all 2.050-1 [22.7 kB] Get:641 http://deb.debian.org/debian stretch/main amd64 libset-intspan-perl all 1.19-1 [26.7 kB] Get:642 http://deb.debian.org/debian stretch/main amd64 liblist-someutils-perl all 0.53-1 [42.0 kB] Get:643 http://deb.debian.org/debian stretch/main amd64 liblist-utilsby-perl all 0.10-1 [14.3 kB] Get:644 http://deb.debian.org/debian stretch/main amd64 libscalar-list-utils-perl amd64 1:1.47-1 [54.4 kB] Get:645 http://deb.debian.org/debian stretch/main amd64 liblist-allutils-perl all 0.12-1 [31.9 kB] Get:646 http://deb.debian.org/debian stretch/main amd64 libipc-system-simple-perl all 1.25-3 [26.9 kB] Get:647 http://deb.debian.org/debian stretch/main amd64 libfile-basedir-perl all 0.07-1 [17.5 kB] Get:648 http://deb.debian.org/debian stretch/main amd64 libmath-vec-perl all 1.01-3 [17.8 kB] Get:649 http://deb.debian.org/debian stretch/main amd64 libspiffy-perl all 0.41-1 [26.1 kB] Get:650 http://deb.debian.org/debian stretch/main amd64 libio-all-perl all 0.86-2 [73.4 kB] Get:651 http://deb.debian.org/debian stretch/main amd64 libmath-vecstat-perl all 0.08-1 [9148 B] Get:652 http://deb.debian.org/debian stretch/main amd64 libgraphics-colornames-perl all 2.11-7.1 [37.9 kB] Get:653 http://deb.debian.org/debian stretch/main amd64 libgraphics-colorobject-perl all 0.5.0-7.1 [28.2 kB] Get:654 http://deb.debian.org/debian stretch/main amd64 libtext-format-perl all 0.60-1 [20.0 kB] Get:655 http://deb.debian.org/debian stretch/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:656 http://deb.debian.org/debian stretch/main amd64 libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:657 http://deb.debian.org/debian stretch/main amd64 libnumber-format-perl all 1.75-1 [30.0 kB] Get:658 http://deb.debian.org/debian stretch/main amd64 libstatistics-basic-perl all 1.6611-1 [70.4 kB] Get:659 http://deb.debian.org/debian stretch/main amd64 circos all 0.69.4+dfsg-1 [19.8 MB] Get:660 http://deb.debian.org/debian stretch/main amd64 circos-tools all 0.22-1 [18.7 MB] Get:661 http://deb.debian.org/debian stretch/main amd64 clearcut amd64 1.0.9-1+b1 [283 kB] Get:662 http://deb.debian.org/debian stretch/main amd64 clonalframe amd64 1.2-5 [49.2 kB] Get:663 http://deb.debian.org/debian stretch/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:664 http://deb.debian.org/debian stretch/main amd64 clustalo amd64 1.2.4-1 [263 kB] Get:665 http://deb.debian.org/debian stretch/main amd64 clustalw amd64 2.1+lgpl-5 [286 kB] Get:666 http://deb.debian.org/debian stretch/main amd64 clustalx amd64 2.1+lgpl-5 [455 kB] Get:667 http://deb.debian.org/debian stretch/main amd64 codonw amd64 1.4.4-3+b1 [90.9 kB] Get:668 http://deb.debian.org/debian stretch/main amd64 libgkarrays1 amd64 2.1.0+dfsg-1 [55.0 kB] Get:669 http://deb.debian.org/debian stretch/main amd64 libgzstream0 amd64 1.5+dfsg-2 [6258 B] Get:670 http://deb.debian.org/debian stretch/main amd64 libjellyfish-2.0-2 amd64 2.2.6-1+b1 [62.2 kB] Get:671 http://deb.debian.org/debian stretch/main amd64 crac amd64 2.5.0+dfsg-1 [254 kB] Get:672 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:673 http://deb.debian.org/debian stretch/main amd64 curl amd64 7.52.1-5+deb9u10 [227 kB] Get:674 http://deb.debian.org/debian stretch/main amd64 python3-xopen all 0.1.1-1 [6072 B] Get:675 http://deb.debian.org/debian stretch/main amd64 python3-cutadapt amd64 1.12-2 [106 kB] Get:676 http://deb.debian.org/debian stretch/main amd64 cutadapt all 1.12-2 [7448 B] Get:677 http://deb.debian.org/debian stretch/main amd64 cython amd64 0.25.2-1 [1863 kB] Get:678 http://deb.debian.org/debian stretch/main amd64 daligner amd64 1.0+20161119-1 [170 kB] Get:679 http://deb.debian.org/debian stretch/main amd64 dascrubber amd64 0~20160601-2 [81.6 kB] Get:680 http://deb.debian.org/debian stretch/main amd64 dawg amd64 1.2-1+b1 [76.9 kB] Get:681 http://deb.debian.org/debian stretch/main amd64 dazzdb amd64 1.0+20161112-2 [150 kB] Get:682 http://deb.debian.org/debian stretch/main amd64 libmatthew-debug-java all 0.8-1 [13.4 kB] Get:683 http://deb.debian.org/debian stretch/main amd64 libunixsocket-java amd64 0.8-1 [15.7 kB] Get:684 http://deb.debian.org/debian stretch/main amd64 libdbus-java all 2.8-6 [150 kB] Get:685 http://deb.debian.org/debian stretch/main amd64 dbus-java-bin all 2.8-6 [74.5 kB] Get:686 http://deb.debian.org/debian stretch/main amd64 libtool all 2.4.6-2 [545 kB] Get:687 http://deb.debian.org/debian stretch/main amd64 dh-autoreconf all 14 [15.9 kB] Get:688 http://deb.debian.org/debian stretch/main amd64 libarchive-zip-perl all 1.59-1+deb9u1 [96.2 kB] Get:689 http://deb.debian.org/debian stretch/main amd64 libfile-stripnondeterminism-perl all 0.034-1 [16.4 kB] Get:690 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:691 http://deb.debian.org/debian stretch/main amd64 dh-strip-nondeterminism all 0.034-1 [10.5 kB] Get:692 http://deb.debian.org/debian stretch/main amd64 gettext amd64 0.19.8.1-2+deb9u1 [1496 kB] Get:693 http://deb.debian.org/debian stretch/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:694 http://deb.debian.org/debian stretch/main amd64 po-debconf all 1.0.20 [247 kB] Get:695 http://deb.debian.org/debian stretch/main amd64 debhelper all 10.2.5 [961 kB] Get:696 http://deb.debian.org/debian stretch/main amd64 dialign amd64 2.2.1-8 [138 kB] Get:697 http://deb.debian.org/debian stretch/main amd64 dialign-tx-data all 1.0.2-9 [869 kB] Get:698 http://deb.debian.org/debian stretch/main amd64 dialign-tx amd64 1.0.2-9 [85.7 kB] Get:699 http://deb.debian.org/debian stretch/main amd64 dindel amd64 1.01+dfsg-4+b1 [333 kB] Get:700 http://deb.debian.org/debian stretch/main amd64 dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:701 http://deb.debian.org/debian stretch/main amd64 discosnp amd64 1.2.6-1+b2 [143 kB] Get:702 http://deb.debian.org/debian stretch/main amd64 dnaclust amd64 3-4+b2 [85.9 kB] Get:703 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:704 http://deb.debian.org/debian stretch/main amd64 docutils-common all 0.13.1+dfsg-2 [200 kB] Get:705 http://deb.debian.org/debian stretch/main amd64 docutils-doc all 0.13.1+dfsg-2 [913 kB] Get:706 http://deb.debian.org/debian stretch/main amd64 dssp amd64 2.2.1-3+b2 [265 kB] Get:707 http://deb.debian.org/debian stretch/main amd64 libkpathsea6 amd64 2016.20160513.41080.dfsg-2+deb9u1 [160 kB] Get:708 http://deb.debian.org/debian stretch/main amd64 libptexenc1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [58.0 kB] Get:709 http://deb.debian.org/debian stretch/main amd64 libsynctex1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [64.9 kB] Get:710 http://deb.debian.org/debian stretch/main amd64 libtexlua52 amd64 2016.20160513.41080.dfsg-2+deb9u1 [111 kB] Get:711 http://deb.debian.org/debian stretch/main amd64 libtexluajit2 amd64 2016.20160513.41080.dfsg-2+deb9u1 [250 kB] Get:712 http://deb.debian.org/debian stretch/main amd64 t1utils amd64 1.39-2 [59.0 kB] Get:713 http://deb.debian.org/debian stretch/main amd64 libcupsimage2 amd64 2.2.1-8+deb9u6 [122 kB] Get:714 http://deb.debian.org/debian stretch/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:715 http://deb.debian.org/debian stretch/main amd64 libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:716 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:717 http://deb.debian.org/debian stretch/main amd64 libgs9-common all 9.26a~dfsg-0+deb9u6 [5143 kB] Get:718 http://deb.debian.org/debian stretch/main amd64 libgs9 amd64 9.26a~dfsg-0+deb9u6 [2213 kB] Get:719 http://deb.debian.org/debian stretch/main amd64 libharfbuzz-icu0 amd64 1.4.2-1 [466 kB] Get:720 http://deb.debian.org/debian stretch/main amd64 libpoppler64 amd64 0.48.0-2+deb9u2 [1287 kB] Get:721 http://deb.debian.org/debian stretch/main amd64 libpotrace0 amd64 1.13-3 [24.9 kB] Get:722 http://deb.debian.org/debian stretch/main amd64 libzzip-0-13 amd64 0.13.62-3.2~deb9u1 [56.1 kB] Get:723 http://deb.debian.org/debian stretch/main amd64 tex-common all 6.06 [566 kB] Get:724 http://deb.debian.org/debian stretch/main amd64 texlive-binaries amd64 2016.20160513.41080.dfsg-2+deb9u1 [7404 kB] Get:725 http://deb.debian.org/debian stretch/main amd64 ghostscript amd64 9.26a~dfsg-0+deb9u6 [99.2 kB] Get:726 http://deb.debian.org/debian stretch/main amd64 dvipng amd64 1.14-2+b3 [86.5 kB] Get:727 http://deb.debian.org/debian stretch/main amd64 dwgsim amd64 0.1.11-3+b1 [38.1 kB] Get:728 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:729 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:730 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:731 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:732 http://deb.debian.org/debian stretch/main amd64 r-cran-getopt amd64 1.20.0-2 [24.4 kB] Get:733 http://deb.debian.org/debian stretch/main amd64 r-cran-chron amd64 2.3-49-1 [104 kB] Get:734 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:735 http://deb.debian.org/debian stretch/main amd64 r-cran-cluster amd64 2.0.5-1 [490 kB] Get:736 http://deb.debian.org/debian stretch/main amd64 r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:737 http://deb.debian.org/debian stretch/main amd64 r-cran-survival amd64 2.40-1-1 [4863 kB] Get:738 http://deb.debian.org/debian stretch/main amd64 r-cran-formula all 1.2-1-1 [162 kB] Get:739 http://deb.debian.org/debian stretch/main amd64 r-cran-rpart amd64 4.1-10-2 [861 kB] Get:740 http://deb.debian.org/debian stretch/main amd64 r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:741 http://deb.debian.org/debian stretch/main amd64 r-cran-latticeextra amd64 0.6-28-2 [2059 kB] Get:742 http://deb.debian.org/debian stretch/main amd64 r-cran-acepack amd64 1.4.1-1 [52.5 kB] Get:743 http://deb.debian.org/debian stretch/main amd64 r-cran-digest amd64 0.6.11-1 [112 kB] Get:744 http://deb.debian.org/debian stretch/main amd64 r-cran-gtable all 0.2.0-1 [65.1 kB] Get:745 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:746 http://deb.debian.org/debian stretch/main amd64 r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:747 http://deb.debian.org/debian stretch/main amd64 littler all 0.3.1-1 [11.7 kB] Get:748 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:749 http://deb.debian.org/debian stretch/main amd64 r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:750 http://deb.debian.org/debian stretch/main amd64 r-cran-plyr amd64 1.8.4-1 [727 kB] Get:751 http://deb.debian.org/debian stretch/main amd64 r-cran-stringi amd64 1.1.2-1 [606 kB] Get:752 http://deb.debian.org/debian stretch/main amd64 r-cran-magrittr amd64 1.5-3 [147 kB] Get:753 http://deb.debian.org/debian stretch/main amd64 r-cran-stringr all 1.1.0-1 [117 kB] Get:754 http://deb.debian.org/debian stretch/main amd64 r-cran-reshape2 amd64 1.4.2-1 [87.5 kB] Get:755 http://deb.debian.org/debian stretch/main amd64 r-cran-dichromat all 2.0.0-3 [146 kB] Get:756 http://deb.debian.org/debian stretch/main amd64 r-cran-colorspace amd64 1.3-2-1 [388 kB] Get:757 http://deb.debian.org/debian stretch/main amd64 r-cran-munsell all 0.4.3-1 [127 kB] Get:758 http://deb.debian.org/debian stretch/main amd64 r-cran-labeling all 0.3-1 [39.9 kB] Get:759 http://deb.debian.org/debian stretch/main amd64 r-cran-scales amd64 0.4.1-1 [200 kB] Get:760 http://deb.debian.org/debian stretch/main amd64 r-cran-assertthat all 0.1-1 [43.3 kB] Get:761 http://deb.debian.org/debian stretch/main amd64 r-cran-lazyeval amd64 0.2.0-1 [112 kB] Get:762 http://deb.debian.org/debian stretch/main amd64 r-cran-tibble amd64 1.2-1 [121 kB] Get:763 http://deb.debian.org/debian stretch/main amd64 r-cran-ggplot2 all 2.2.1-2 [2658 kB] Get:764 http://deb.debian.org/debian stretch/main amd64 r-cran-gridextra all 2.2.1-1 [451 kB] Get:765 http://deb.debian.org/debian stretch/main amd64 r-cran-data.table amd64 1.10.0-1 [1070 kB] Get:766 http://deb.debian.org/debian stretch/main amd64 r-cran-htmltools amd64 0.3.5-2 [115 kB] Get:767 http://deb.debian.org/debian stretch/main amd64 r-cran-evaluate all 0.10-1 [51.5 kB] Get:768 http://deb.debian.org/debian stretch/main amd64 libjs-highlight.js all 8.2+ds-5 [165 kB] Get:769 http://deb.debian.org/debian stretch/main amd64 r-cran-highr all 0.6-1 [30.1 kB] Get:770 http://deb.debian.org/debian stretch/main amd64 fonts-mathjax all 2.7.0-2 [960 kB] Get:771 http://deb.debian.org/debian stretch/main amd64 libjs-mathjax all 2.7.0-2 [5603 kB] Get:772 http://deb.debian.org/debian stretch/main amd64 r-cran-mime amd64 0.5-1 [25.5 kB] Get:773 http://deb.debian.org/debian stretch/main amd64 r-cran-markdown amd64 0.7.7-1 [95.2 kB] Get:774 http://deb.debian.org/debian stretch/main amd64 r-cran-yaml amd64 2.1.14-1 [79.4 kB] Get:775 http://deb.debian.org/debian stretch/main amd64 r-cran-knitr amd64 1.15.1-1 [784 kB] Get:776 http://deb.debian.org/debian stretch/main amd64 r-cran-viridis all 0.3.4-1 [1723 kB] Get:777 http://deb.debian.org/debian stretch/main amd64 r-cran-htmltable all 1.7-2 [153 kB] Get:778 http://deb.debian.org/debian stretch/main amd64 r-cran-base64enc amd64 0.1-3-1 [23.4 kB] Get:779 http://deb.debian.org/debian stretch/main amd64 r-cran-hmisc amd64 4.0-2-1 [1745 kB] Get:780 http://deb.debian.org/debian stretch/main amd64 ea-utils amd64 1.1.2+dfsg-4 [229 kB] Get:781 http://deb.debian.org/debian stretch/main amd64 python3-reportlab-accel amd64 3.3.0-2+deb9u1 [32.1 kB] Get:782 http://deb.debian.org/debian stretch/main amd64 python3-reportlab all 3.3.0-2+deb9u1 [474 kB] Get:783 http://deb.debian.org/debian stretch/main amd64 ecopcr amd64 0.5.0+dfsg-1 [52.5 kB] Get:784 http://deb.debian.org/debian stretch/main amd64 libtmglib3 amd64 3.7.0-2 [130 kB] Get:785 http://deb.debian.org/debian stretch/main amd64 liblapacke amd64 3.7.0-2 [360 kB] Get:786 http://deb.debian.org/debian stretch/main amd64 eigensoft amd64 6.1.4+dfsg-1+b1 [341 kB] Get:787 http://deb.debian.org/debian stretch/main amd64 embassy-domainatrix amd64 0.1.660-1 [61.7 kB] Get:788 http://deb.debian.org/debian stretch/main amd64 embassy-domalign amd64 0.1.660-1 [66.7 kB] Get:789 http://deb.debian.org/debian stretch/main amd64 embassy-domsearch amd64 1:0.1.660-1 [60.6 kB] Get:790 http://deb.debian.org/debian stretch/main amd64 exim4-config all 4.89-2+deb9u7 [377 kB] Get:791 http://deb.debian.org/debian stretch/main amd64 exim4-base amd64 4.89-2+deb9u7 [1094 kB] Get:792 http://deb.debian.org/debian stretch/main amd64 exim4-daemon-light amd64 4.89-2+deb9u7 [542 kB] Get:793 http://deb.debian.org/debian stretch/main amd64 exim4 all 4.89-2+deb9u7 [7860 B] Get:794 http://deb.debian.org/debian stretch/main amd64 exonerate amd64 2.4.0-2 [1476 kB] Get:795 http://deb.debian.org/debian stretch/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:796 http://deb.debian.org/debian stretch/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] Get:797 http://deb.debian.org/debian stretch/main amd64 python-pkg-resources all 33.1.1-1 [166 kB] Get:798 http://deb.debian.org/debian stretch/main amd64 python-networkx all 1.11-2 [822 kB] Get:799 http://deb.debian.org/debian stretch/main amd64 rsync amd64 3.1.2-1+deb9u2 [393 kB] Get:800 http://deb.debian.org/debian stretch/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get:801 http://deb.debian.org/debian stretch/main amd64 falcon amd64 1.8.6-1.1 [510 kB] Get:802 http://deb.debian.org/debian stretch/main amd64 libdisorder0 amd64 0.0.2-1 [3962 B] Get:803 http://deb.debian.org/debian stretch/main amd64 libfastahack0 amd64 0.0+20160702-1+b1 [22.1 kB] Get:804 http://deb.debian.org/debian stretch/main amd64 fastahack amd64 0.0+20160702-1+b1 [10.4 kB] Get:805 http://deb.debian.org/debian stretch/main amd64 fastdnaml amd64 1.2.2-11+b1 [60.5 kB] Get:806 http://deb.debian.org/debian stretch/main amd64 fastlink amd64 4.1P-fix100+dfsg-1+b1 [250 kB] Get:807 http://deb.debian.org/debian stretch/main amd64 fastml amd64 3.1-3 [991 kB] Get:808 http://deb.debian.org/debian stretch/main amd64 libcommons-math3-java all 3.6.1-2 [1941 kB] Get:809 http://deb.debian.org/debian stretch/main amd64 libjbzip2-java all 0.9.1-3 [39.9 kB] Get:810 http://deb.debian.org/debian stretch/main amd64 fastqc all 0.11.5+dfsg-6 [375 kB] Get:811 http://deb.debian.org/debian stretch/main amd64 r-mathlib amd64 3.3.3-1 [1567 kB] Get:812 http://deb.debian.org/debian stretch/main amd64 fastqtl amd64 2.184+dfsg-5 [200 kB] Get:813 http://deb.debian.org/debian stretch/main amd64 libgtextutils0v5 amd64 0.7-4 [19.0 kB] Get:814 http://deb.debian.org/debian stretch/main amd64 libgd-text-perl all 0.86-9 [41.4 kB] Get:815 http://deb.debian.org/debian stretch/main amd64 libgd-graph-perl all 1.48-2 [389 kB] Get:816 http://deb.debian.org/debian stretch/main amd64 libperlio-gzip-perl amd64 0.19-1+b2 [17.3 kB] Get:817 http://deb.debian.org/debian stretch/main amd64 fastx-toolkit amd64 0.0.14-3 [90.2 kB] Get:818 http://deb.debian.org/debian stretch/main amd64 junit all 3.8.2-8 [107 kB] Get:819 http://deb.debian.org/debian stretch/main amd64 libnb-org-openide-util-lookup-java all 8.1+dfsg1-5 [80.4 kB] Get:820 http://deb.debian.org/debian stretch/main amd64 libnb-org-openide-util-java all 8.1+dfsg1-5 [167 kB] Get:821 http://deb.debian.org/debian stretch/main amd64 libfreehep-util-java all 2.0.2-6 [46.8 kB] Get:822 http://deb.debian.org/debian stretch/main amd64 libfreehep-swing-java all 2.0.3-4 [188 kB] Get:823 http://deb.debian.org/debian stretch/main amd64 libfreehep-export-java all 2.1.1-3 [20.8 kB] Get:824 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphics2d-java all 2.1.1-5 [121 kB] Get:825 http://deb.debian.org/debian stretch/main amd64 libfreehep-io-java all 2.0.2-5 [59.6 kB] Get:826 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-java all 2.1.1-4 [170 kB] Get:827 http://deb.debian.org/debian stretch/main amd64 libtablelayout-java all 20090826-3 [44.5 kB] Get:828 http://deb.debian.org/debian stretch/main amd64 libjas-plotter-java all 2.2.6+dfsg1-3 [584 kB] Get:829 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-tests-java all 2.1.1+dfsg1-4 [99.9 kB] Get:830 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-emf-java all 2.1.1-emfplus+dfsg1-3 [183 kB] Get:831 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-pdf-java all 2.1.1+dfsg-2 [71.9 kB] Get:832 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-ps-java all 2.1.1-2 [46.5 kB] Get:833 http://deb.debian.org/debian stretch/main amd64 libfreehep-xml-java all 2.1.2+dfsg1-4 [131 kB] Get:834 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-svg-java all 2.1.1-4 [25.1 kB] Get:835 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-swf-java all 2.1.1+dfsg-2 [155 kB] Get:836 http://deb.debian.org/debian stretch/main amd64 libitext5-java all 5.5.6-2 [2152 kB] Get:837 http://deb.debian.org/debian stretch/main amd64 figtree all 1.4.2+dfsg-2 [948 kB] Get:838 http://deb.debian.org/debian stretch/main amd64 filo amd64 1.1.0-3+b1 [46.3 kB] Get:839 http://deb.debian.org/debian stretch/main amd64 python-pysam amd64 0.10.0+ds-2 [1301 kB] Get:840 http://deb.debian.org/debian stretch/main amd64 fitgcp amd64 0.0.20150429-1 [12.3 kB] Get:841 http://deb.debian.org/debian stretch/main amd64 flexbar amd64 2.50-2+b1 [257 kB] Get:842 http://deb.debian.org/debian stretch/main amd64 fml-asm amd64 0.1-2+b1 [66.8 kB] Get:843 http://deb.debian.org/debian stretch/main amd64 fonts-cabin all 1.5-2 [139 kB] Get:844 http://deb.debian.org/debian stretch/main amd64 fonts-comfortaa all 2.003-1 [133 kB] Get:845 http://deb.debian.org/debian stretch/main amd64 fonts-croscore all 20161116-1 [2138 kB] Get:846 http://deb.debian.org/debian stretch/main amd64 fonts-crosextra-caladea all 20130214-1 [82.1 kB] Get:847 http://deb.debian.org/debian stretch/main amd64 fonts-crosextra-carlito all 20130920-1 [745 kB] Get:848 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-extra all 2.37-1 [1982 kB] Get:849 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu all 2.37-1 [32.3 kB] Get:850 http://deb.debian.org/debian stretch/main amd64 fonts-ebgaramond all 0.016-1 [475 kB] Get:851 http://deb.debian.org/debian stretch/main amd64 fonts-ebgaramond-extra all 0.016-1 [2157 kB] Get:852 http://deb.debian.org/debian stretch/main amd64 fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:853 http://deb.debian.org/debian stretch/main amd64 fonts-freefont-otf all 20120503-6 [3168 kB] Get:854 http://deb.debian.org/debian stretch/main amd64 fonts-freefont-ttf all 20120503-6 [4316 kB] Get:855 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-artemisia all 1.1-5 [259 kB] Get:856 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:857 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-didot all 1.1-6 [278 kB] Get:858 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:859 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-olga all 1.1-5 [33.2 kB] Get:860 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-solomos all 1.1-5 [40.6 kB] Get:861 http://deb.debian.org/debian stretch/main amd64 fonts-junicode all 0.7.8-2 [643 kB] Get:862 http://deb.debian.org/debian stretch/main amd64 fonts-linuxlibertine all 5.3.0-2 [1713 kB] Get:863 http://deb.debian.org/debian stretch/main amd64 fonts-lmodern all 2.004.5-3 [4540 kB] Get:864 http://deb.debian.org/debian stretch/main amd64 fonts-lobster all 2.0-2 [39.5 kB] Get:865 http://deb.debian.org/debian stretch/main amd64 fonts-lobstertwo all 2.0-2 [94.0 kB] Get:866 http://deb.debian.org/debian stretch/main amd64 fonts-noto-hinted all 20161116-1 [5075 kB] Get:867 http://deb.debian.org/debian stretch/main amd64 fonts-noto-mono all 20161116-1 [79.2 kB] Get:868 http://deb.debian.org/debian stretch/main amd64 fonts-oflb-asana-math all 000.907-6 [245 kB] Get:869 http://deb.debian.org/debian stretch/main amd64 fonts-roboto-hinted all 2:0~20160106-2 [2922 kB] Get:870 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentium all 20081126:1.03-1 [251 kB] Get:871 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentium-basic all 1.1-7 [382 kB] Get:872 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentiumplus all 5.000-1 [2811 kB] Get:873 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentiumplus-compact all 5.000-2 [1522 kB] Get:874 http://deb.debian.org/debian stretch/main amd64 fonts-texgyre all 20160520-1 [8761 kB] Get:875 http://deb.debian.org/debian stretch/main amd64 libavalon-framework-java all 4.2.0-9 [70.6 kB] Get:876 http://deb.debian.org/debian stretch/main amd64 libfontbox-java all 1:1.8.12-1 [205 kB] Get:877 http://deb.debian.org/debian stretch/main amd64 libfop-java all 1:2.1-6 [9459 kB] Get:878 http://deb.debian.org/debian stretch/main amd64 fop all 1:2.1-6 [22.9 kB] Get:879 http://deb.debian.org/debian stretch/main amd64 freeglut3 amd64 2.8.1-3 [123 kB] Get:880 http://deb.debian.org/debian stretch/main amd64 fsa amd64 1.15.9+dfsg-3 [753 kB] Get:881 http://deb.debian.org/debian stretch/main amd64 libsdsl3 amd64 2.0.3-4 [194 kB] Get:882 http://deb.debian.org/debian stretch/main amd64 fsm-lite amd64 1.0-2 [86.4 kB] Get:883 http://deb.debian.org/debian stretch/main amd64 ttf-dejavu-core all 2.37-1 [32.1 kB] Get:884 http://deb.debian.org/debian stretch/main amd64 ttf-dejavu-extra all 2.37-1 [32.2 kB] Get:885 http://deb.debian.org/debian stretch/main amd64 ttf-dejavu all 2.37-1 [32.0 kB] Get:886 http://deb.debian.org/debian stretch/main amd64 libpangox-1.0-0 amd64 0.0.2-5+b2 [42.3 kB] Get:887 http://deb.debian.org/debian stretch/main amd64 libgtkglext1 amd64 1.2.0-4 [90.3 kB] Get:888 http://deb.debian.org/debian stretch/main amd64 gamgi amd64 0.17.1-1+b1 [734 kB] Get:889 http://deb.debian.org/debian stretch/main amd64 libncl1 amd64 2.1.18+dfsg-2+b1 [355 kB] Get:890 http://deb.debian.org/debian stretch/main amd64 garli amd64 2.1-1 [571 kB] Get:891 http://deb.debian.org/debian stretch/main amd64 garlic amd64 1.6-1.1+b2 [231 kB] Get:892 http://deb.debian.org/debian stretch/main amd64 python-reportlab-accel amd64 3.3.0-2+deb9u1 [36.8 kB] Get:893 http://deb.debian.org/debian stretch/main amd64 python-reportlab all 3.3.0-2+deb9u1 [478 kB] Get:894 http://deb.debian.org/debian stretch/main amd64 python-biopython amd64 1.68+dfsg-3 [1201 kB] Get:895 http://deb.debian.org/debian stretch/main amd64 bowtie amd64 1.1.2-6 [1618 kB] Get:896 http://deb.debian.org/debian stretch/main amd64 seqan-apps amd64 2.3.1+dfsg-4 [11.5 MB] Get:897 http://deb.debian.org/debian stretch/main amd64 gasic amd64 0.0.r19-1 [19.9 kB] Get:898 http://deb.debian.org/debian stretch/main amd64 libbio-graphics-perl all 2.40-1 [611 kB] Get:899 http://deb.debian.org/debian stretch/main amd64 libbio-coordinate-perl all 1.7.1-1 [56.0 kB] Get:900 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:901 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:902 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:903 http://deb.debian.org/debian stretch/main amd64 libcgi-pm-perl all 4.35-1 [222 kB] Get:904 http://deb.debian.org/debian stretch/main amd64 libcgi-session-perl all 4.48-3 [119 kB] Get:905 http://deb.debian.org/debian stretch/main amd64 libjson-perl all 2.90-1 [86.0 kB] Get:906 http://deb.debian.org/debian stretch/main amd64 libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:907 http://deb.debian.org/debian stretch/main amd64 liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:908 http://deb.debian.org/debian stretch/main amd64 libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:909 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:910 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:911 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:912 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:913 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:914 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:915 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:916 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:917 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:918 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:919 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:920 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:921 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:922 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:923 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:924 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:925 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:926 http://deb.debian.org/debian stretch/main amd64 libterm-readkey-perl amd64 2.37-1 [27.2 kB] Get:927 http://deb.debian.org/debian stretch/main amd64 sqlite3 amd64 3.16.2-5+deb9u1 [784 kB] Get:928 http://deb.debian.org/debian stretch/main amd64 libdbi-perl amd64 1.636-1+b1 [766 kB] Get:929 http://deb.debian.org/debian stretch/main amd64 libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:930 http://deb.debian.org/debian stretch/main amd64 libjs-prototype all 1.7.1-3 [44.3 kB] Get:931 http://deb.debian.org/debian stretch/main amd64 libjs-scriptaculous all 1.9.0-2 [129 kB] Get:932 http://deb.debian.org/debian stretch/main amd64 libanyevent-perl amd64 7.130-2 [391 kB] Get:933 http://deb.debian.org/debian stretch/main amd64 libanyevent-cachedns-perl all 0.08-2 [7150 B] Get:934 http://deb.debian.org/debian stretch/main amd64 libcommon-sense-perl amd64 3.74-2 [23.6 kB] Get:935 http://deb.debian.org/debian stretch/main amd64 libanyevent-http-perl all 2.23-1 [34.6 kB] Get:936 http://deb.debian.org/debian stretch/main amd64 libstring-approx-perl amd64 3.27-1+b4 [40.0 kB] Get:937 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:938 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:939 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:940 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:941 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:942 http://deb.debian.org/debian stretch/main amd64 libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:943 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:944 http://deb.debian.org/debian stretch/main amd64 libvm-ec2-perl all 1.28-2 [768 kB] Get:945 http://deb.debian.org/debian stretch/main amd64 gbrowse all 2.56+dfsg-2 [2373 kB] Get:946 http://deb.debian.org/debian stretch/main amd64 gdpc amd64 2.2.5-6 [33.8 kB] Get:947 http://deb.debian.org/debian stretch/main amd64 genometools amd64 1.5.9+ds-4 [1903 kB] Get:948 http://deb.debian.org/debian stretch/main amd64 libtinyxml2.6.2v5 amd64 2.6.2-4 [36.8 kB] Get:949 http://deb.debian.org/debian stretch/main amd64 gentle amd64 1.9+cvs20100605+dfsg1-5 [3874 kB] Get:950 http://deb.debian.org/debian stretch/main amd64 gff2aplot amd64 2.0-8+b1 [311 kB] Get:951 http://deb.debian.org/debian stretch/main amd64 gff2ps all 0.98d-5 [44.6 kB] Get:952 http://deb.debian.org/debian stretch/main amd64 libgfortran-6-dev amd64 6.3.0-18+deb9u1 [299 kB] Get:953 http://deb.debian.org/debian stretch/main amd64 gfortran-6 amd64 6.3.0-18+deb9u1 [6916 kB] Get:954 http://deb.debian.org/debian stretch/main amd64 gfortran amd64 4:6.3.0-4 [1356 B] Get:955 http://deb.debian.org/debian stretch/main amd64 libsc-data all 2.3.1-18+deb9u1 [119 kB] Get:956 http://deb.debian.org/debian stretch/main amd64 openmpi-common all 2.0.2-2 [149 kB] Get:957 http://deb.debian.org/debian stretch/main amd64 openmpi-bin amd64 2.0.2-2 [186 kB] Get:958 http://deb.debian.org/debian stretch/main amd64 mpi-default-bin amd64 1.8 [4050 B] Get:959 http://deb.debian.org/debian stretch/main amd64 libint1 amd64 1.1.6-2+b1 [2705 kB] Get:960 http://deb.debian.org/debian stretch/main amd64 libsc7v5 amd64 2.3.1-18+deb9u1 [2320 kB] Get:961 http://deb.debian.org/debian stretch/main amd64 mpqc amd64 2.3.1-18+deb9u1 [90.1 kB] Get:962 http://deb.debian.org/debian stretch/main amd64 libmopac7-1gf amd64 1.15-6+b1 [476 kB] Get:963 http://deb.debian.org/debian stretch/main amd64 libghemical-data all 3.0.0-4.1 [109 kB] Get:964 http://deb.debian.org/debian stretch/main amd64 libghemical5v5 amd64 3.0.0-4.1+b3 [374 kB] Get:965 http://deb.debian.org/debian stretch/main amd64 liboglappth2 amd64 1.0.0-2 [34.0 kB] Get:966 http://deb.debian.org/debian stretch/main amd64 libopenbabel4v5 amd64 2.3.2+dfsg-3 [2848 kB] Get:967 http://deb.debian.org/debian stretch/main amd64 ghemical amd64 3.0.0-2 [1819 kB] Get:968 http://deb.debian.org/debian stretch/main amd64 libsuitesparseconfig4 amd64 1:4.5.4-1 [18.8 kB] Get:969 http://deb.debian.org/debian stretch/main amd64 libamd2 amd64 1:4.5.4-1 [36.3 kB] Get:970 http://deb.debian.org/debian stretch/main amd64 libcolamd2 amd64 1:4.5.4-1 [28.5 kB] Get:971 http://deb.debian.org/debian stretch/main amd64 libglpk40 amd64 4.61-1 [396 kB] Get:972 http://deb.debian.org/debian stretch/main amd64 libglpk-java amd64 1.7.0-1 [776 kB] Get:973 http://deb.debian.org/debian stretch/main amd64 glpk-utils amd64 4.61-1 [151 kB] Get:974 http://deb.debian.org/debian stretch/main amd64 tophat amd64 2.1.1+dfsg-2+b2 [755 kB] Get:975 http://deb.debian.org/debian stretch/main amd64 giira amd64 0.0.20140625-1 [144 kB] Get:976 http://deb.debian.org/debian stretch/main amd64 glam2 amd64 1064-3+b1 [240 kB] Get:977 http://deb.debian.org/debian stretch/main amd64 gnustep-base-runtime amd64 1.24.9-3.1+deb9u1 [190 kB] Get:978 http://deb.debian.org/debian stretch/main amd64 graphlan all 1.1-2 [2463 kB] Get:979 http://deb.debian.org/debian stretch/main amd64 libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:980 http://deb.debian.org/debian stretch/main amd64 libcdt5 amd64 2.38.0-17 [59.6 kB] Get:981 http://deb.debian.org/debian stretch/main amd64 libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:982 http://deb.debian.org/debian stretch/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:983 http://deb.debian.org/debian stretch/main amd64 libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:984 http://deb.debian.org/debian stretch/main amd64 libxdot4 amd64 2.38.0-17 [55.6 kB] Get:985 http://deb.debian.org/debian stretch/main amd64 libgvc6 amd64 2.38.0-17 [639 kB] Get:986 http://deb.debian.org/debian stretch/main amd64 libgvpr2 amd64 2.38.0-17 [211 kB] Get:987 http://deb.debian.org/debian stretch/main amd64 graphviz amd64 2.38.0-17 [802 kB] Get:988 http://deb.debian.org/debian stretch/main amd64 libgetopt-euclid-perl all 0.4.5-2 [47.4 kB] Get:989 http://deb.debian.org/debian stretch/main amd64 libmath-random-mt-perl amd64 1.17-1+b2 [15.2 kB] Get:990 http://deb.debian.org/debian stretch/main amd64 grinder all 0.5.4-1 [79.5 kB] Get:991 http://deb.debian.org/debian stretch/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:992 http://deb.debian.org/debian stretch/main amd64 libopus0 amd64 1.2~alpha2-1 [171 kB] Get:993 http://deb.debian.org/debian stretch/main amd64 libtheora0 amd64 1.1.1+dfsg.1-14+b1 [177 kB] Get:994 http://deb.debian.org/debian stretch/main amd64 libvisual-0.4-0 amd64 0.4.0-10 [132 kB] Get:995 http://deb.debian.org/debian stretch/main amd64 gstreamer1.0-plugins-base amd64 1.10.4-1+deb9u1 [1497 kB] Get:996 http://deb.debian.org/debian stretch/main amd64 python3-numpy amd64 1:1.12.1-3 [1934 kB] Get:997 http://deb.debian.org/debian stretch/main amd64 python3-biopython amd64 1.68+dfsg-3 [1163 kB] Get:998 http://deb.debian.org/debian stretch/main amd64 python3-nose all 1.3.7-2 [132 kB] Get:999 http://deb.debian.org/debian stretch/main amd64 fasttree amd64 2.1.9-1 [132 kB] Get:1000 http://deb.debian.org/debian stretch/main amd64 raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:1001 http://deb.debian.org/debian stretch/main amd64 gubbins amd64 2.2.0-1 [53.1 kB] Get:1002 http://deb.debian.org/debian stretch/main amd64 guile-2.0-libs amd64 2.0.13+1-4 [2232 kB] Get:1003 http://deb.debian.org/debian stretch/main amd64 gwama amd64 2.2.2+dfsg-1 [82.3 kB] Get:1004 http://deb.debian.org/debian stretch/main amd64 harvest-tools amd64 1.3-1 [134 kB] Get:1005 http://deb.debian.org/debian stretch/main amd64 hdf5-tools amd64 1.10.0-patch1+docs-3+deb9u1 [405 kB] Get:1006 http://deb.debian.org/debian stretch/main amd64 hilive amd64 0.3-2 [291 kB] Get:1007 http://deb.debian.org/debian stretch/main amd64 hisat2 amd64 2.0.5-1 [1245 kB] Get:1008 http://deb.debian.org/debian stretch/main amd64 libpvm3 amd64 3.4.6-1+b2 [89.6 kB] Get:1009 http://deb.debian.org/debian stretch/main amd64 hmmer2 amd64 2.3.2-13 [2653 kB] Get:1010 http://deb.debian.org/debian stretch/main amd64 hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:1011 http://deb.debian.org/debian stretch/main amd64 hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:1012 http://deb.debian.org/debian stretch/main amd64 libpangoxft-1.0-0 amd64 1.40.5-1 [187 kB] Get:1013 http://deb.debian.org/debian stretch/main amd64 hyphygui amd64 2.2.7+dfsg-1+b2 [1487 kB] Get:1014 http://deb.debian.org/debian stretch/main amd64 icc-profiles-free all 2.0.1+dfsg-1 [552 kB] Get:1015 http://deb.debian.org/debian stretch/main amd64 icu-devtools amd64 57.1-6+deb9u4 [178 kB] Get:1016 http://deb.debian.org/debian stretch/main amd64 idba amd64 1.1.3-1 [231 kB] Get:1017 http://deb.debian.org/debian stretch/main amd64 imagemagick-6.q16 amd64 8:6.9.7.4+dfsg-11+deb9u8 [563 kB] Get:1018 http://deb.debian.org/debian stretch/main amd64 imagemagick amd64 8:6.9.7.4+dfsg-11+deb9u8 [141 kB] Get:1019 http://deb.debian.org/debian stretch/main amd64 indelible amd64 1.03-2+b1 [367 kB] Get:1020 http://deb.debian.org/debian stretch/main amd64 infernal amd64 1.1.2-1 [22.0 MB] Get:1021 http://deb.debian.org/debian stretch/main amd64 ipig amd64 0.0.r5-2 [166 kB] Get:1022 http://deb.debian.org/debian stretch/main amd64 python-ptyprocess all 0.5.1-1 [12.5 kB] Get:1023 http://deb.debian.org/debian stretch/main amd64 python-pexpect all 4.2.1-1 [47.9 kB] Get:1024 http://deb.debian.org/debian stretch/main amd64 python-pathlib2 all 2.2.0+really2.1.0-1 [16.5 kB] Get:1025 http://deb.debian.org/debian stretch/main amd64 python-pickleshare all 0.7.4-1 [6736 B] Get:1026 http://deb.debian.org/debian stretch/main amd64 python-wcwidth all 0.1.7+dfsg1-1 [14.6 kB] Get:1027 http://deb.debian.org/debian stretch/main amd64 python-prompt-toolkit all 1.0.9-1 [174 kB] Get:1028 http://deb.debian.org/debian stretch/main amd64 python-pygments all 2.2.0+dfsg-1 [590 kB] Get:1029 http://deb.debian.org/debian stretch/main amd64 python-simplegeneric all 0.8.1-1 [11.9 kB] Get:1030 http://deb.debian.org/debian stretch/main amd64 python-ipython-genutils all 0.1.0-2 [20.7 kB] Get:1031 http://deb.debian.org/debian stretch/main amd64 python-enum34 all 1.1.6-1 [35.0 kB] Get:1032 http://deb.debian.org/debian stretch/main amd64 python-traitlets all 4.3.1-1 [60.6 kB] Get:1033 http://deb.debian.org/debian stretch/main amd64 python-backports-shutil-get-terminal-size all 1.0.0-3 [4656 B] Get:1034 http://deb.debian.org/debian stretch/main amd64 python-ipython all 5.1.0-3 [375 kB] Get:1035 http://deb.debian.org/debian stretch/main amd64 ipython all 5.1.0-3 [5496 B] Get:1036 http://deb.debian.org/debian stretch/main amd64 iqtree amd64 1.5.3+dfsg-2 [2489 kB] Get:1037 http://deb.debian.org/debian stretch/main amd64 isympy-common all 1.0-3 [189 kB] Get:1038 http://deb.debian.org/debian stretch/main amd64 python-mpmath all 0.19-3 [402 kB] Get:1039 http://deb.debian.org/debian stretch/main amd64 python-sympy all 1.0-3 [2367 kB] Get:1040 http://deb.debian.org/debian stretch/main amd64 isympy all 1.0-3 [6828 B] Get:1041 http://deb.debian.org/debian stretch/main amd64 python3-decorator all 4.0.11-1 [13.3 kB] Get:1042 http://deb.debian.org/debian stretch/main amd64 python3-networkx all 1.11-2 [624 kB] Get:1043 http://deb.debian.org/debian stretch/main amd64 kmc amd64 2.3+dfsg-5 [467 kB] Get:1044 http://deb.debian.org/debian stretch/main amd64 libbambamc0 amd64 0.0.50-1 [35.4 kB] Get:1045 http://deb.debian.org/debian stretch/main amd64 smalt amd64 0.7.6-6 [112 kB] Get:1046 http://deb.debian.org/debian stretch/main amd64 iva amd64 1.0.8+ds-1 [8577 kB] Get:1047 http://deb.debian.org/debian stretch/main amd64 jaligner all 1.0+dfsg-4 [128 kB] Get:1048 http://deb.debian.org/debian stretch/main amd64 javascript-common all 11 [6120 B] Get:1049 http://deb.debian.org/debian stretch/main amd64 jellyfish amd64 2.2.6-1+b1 [349 kB] Get:1050 http://deb.debian.org/debian stretch/main amd64 libpal-java all 1.5.1+dfsg-2 [656 kB] Get:1051 http://deb.debian.org/debian stretch/main amd64 jmodeltest all 2.1.10+dfsg-5 [981 kB] Get:1052 http://deb.debian.org/debian stretch/main amd64 icedtea-netx-common all 1.6.2-3.1+deb9u1 [1383 kB] Get:1053 http://deb.debian.org/debian stretch/main amd64 libnaga-java all 3.0+svn80-1 [379 kB] Get:1054 http://deb.debian.org/debian stretch/main amd64 libjmol-java all 14.6.4+2016.11.05+dfsg1-3 [6391 kB] Get:1055 http://deb.debian.org/debian stretch/main amd64 jmol all 14.6.4+2016.11.05+dfsg1-3 [70.9 kB] Get:1056 http://deb.debian.org/debian stretch/main amd64 kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:1057 http://deb.debian.org/debian stretch/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:1058 http://deb.debian.org/debian stretch/main amd64 libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:1059 http://deb.debian.org/debian stretch/main amd64 khmer-common all 2.0+dfsg-10 [244 kB] Get:1060 http://deb.debian.org/debian stretch/main amd64 python3-bz2file all 0.98-1 [7714 B] Get:1061 http://deb.debian.org/debian stretch/main amd64 python3-screed all 0.9-2 [71.5 kB] Get:1062 http://deb.debian.org/debian stretch/main amd64 khmer amd64 2.0+dfsg-10 [5980 kB] Get:1063 http://deb.debian.org/debian stretch/main amd64 python-h5py amd64 2.7.0-1 [634 kB] Get:1064 http://deb.debian.org/debian stretch/main amd64 python-avro all 1.8.1+dfsg-1 [58.1 kB] Get:1065 http://deb.debian.org/debian stretch/main amd64 python-iso8601 all 0.1.11-1 [12.7 kB] Get:1066 http://deb.debian.org/debian stretch/main amd64 python-urllib3 all 1.19.1-1 [77.5 kB] Get:1067 http://deb.debian.org/debian stretch/main amd64 python-chardet all 2.3.0-2 [96.0 kB] Get:1068 http://deb.debian.org/debian stretch/main amd64 python-requests all 2.12.4-1 [101 kB] Get:1069 http://deb.debian.org/debian stretch/main amd64 python-pbcommand all 0.5.3-1 [79.6 kB] Get:1070 http://deb.debian.org/debian stretch/main amd64 python-pbcore all 1.2.11+dfsg-1 [9087 kB] Get:1071 http://deb.debian.org/debian stretch/main amd64 kineticstools-data all 0.6.1+20161222-1 [102 MB] Get:1072 http://deb.debian.org/debian stretch/main amd64 python-kineticstools amd64 0.6.1+20161222-1 [49.3 kB] Get:1073 http://deb.debian.org/debian stretch/main amd64 kineticstools all 0.6.1+20161222-1 [13.3 kB] Get:1074 http://deb.debian.org/debian stretch/main amd64 king-probe amd64 2.13.110909-2 [86.5 kB] Get:1075 http://deb.debian.org/debian stretch/main amd64 kissplice amd64 2.4.0-p1-1 [781 kB] Get:1076 http://deb.debian.org/debian stretch/main amd64 sim4db amd64 0~20150903+r2013-3 [440 kB] Get:1077 http://deb.debian.org/debian stretch/main amd64 kmer all 0~20150903+r2013-3 [4266 B] Get:1078 http://deb.debian.org/debian stretch/main amd64 kraken amd64 0.10.5~beta-2+b1 [81.3 kB] Get:1079 http://deb.debian.org/debian stretch/main amd64 ksh amd64 93u+20120801-3.1 [890 kB] Get:1080 http://deb.debian.org/debian stretch/main amd64 lambda-align amd64 1.0.1-2 [1057 kB] Get:1081 http://deb.debian.org/debian stretch/main amd64 laptop-detect amd64 0.13.8 [6162 B] Get:1082 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:1083 http://deb.debian.org/debian stretch/main amd64 sysstat amd64 11.4.3-2 [360 kB] Get:1084 http://deb.debian.org/debian stretch/main amd64 parallel all 20161222-1 [307 kB] Get:1085 http://deb.debian.org/debian stretch/main amd64 last-align amd64 830-1 [725 kB] Get:1086 http://deb.debian.org/debian stretch/main amd64 lefse all 1.0+20160802-1 [44.6 kB] Get:1087 http://deb.debian.org/debian stretch/main amd64 liberror-perl all 0.17024-1 [26.9 kB] Get:1088 http://deb.debian.org/debian stretch/main amd64 libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:1089 http://deb.debian.org/debian stretch/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:1090 http://deb.debian.org/debian stretch/main amd64 libace-perl amd64 1.92-4+b1 [286 kB] Get:1091 http://deb.debian.org/debian stretch/main amd64 libfann2 amd64 2.2.0+ds-3 [66.1 kB] Get:1092 http://deb.debian.org/debian stretch/main amd64 libai-fann-perl amd64 0.10-3+b2 [28.4 kB] Get:1093 http://deb.debian.org/debian stretch/main amd64 libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:1094 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:1095 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:1096 http://deb.debian.org/debian stretch/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:1097 http://deb.debian.org/debian stretch/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:1098 http://deb.debian.org/debian stretch/main amd64 libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:1099 http://deb.debian.org/debian stretch/main amd64 libapache2-mod-perl2 amd64 2.0.10-2+deb9u1 [886 kB] Get:1100 http://deb.debian.org/debian stretch/main amd64 libapache-dbi-perl all 1.12-1 [54.6 kB] Get:1101 http://deb.debian.org/debian stretch/main amd64 libapache2-reload-perl all 0.13-1 [17.4 kB] Get:1102 http://deb.debian.org/debian stretch/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:1103 http://deb.debian.org/debian stretch/main amd64 libarchive13 amd64 3.2.2-2+deb9u2 [294 kB] Get:1104 http://deb.debian.org/debian stretch/main amd64 libarpack2 amd64 3.4.0-1+b1 [96.1 kB] Get:1105 http://deb.debian.org/debian stretch/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-2 [160 kB] Get:1106 http://deb.debian.org/debian stretch/main amd64 libarmadillo7 amd64 1:7.600.2+dfsg-2 [81.8 kB] Get:1107 http://deb.debian.org/debian stretch/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:1108 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:1109 http://deb.debian.org/debian stretch/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:1110 http://deb.debian.org/debian stretch/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:1111 http://deb.debian.org/debian stretch/main amd64 librole-tiny-perl all 2.000005-1 [19.0 kB] Get:1112 http://deb.debian.org/debian stretch/main amd64 libstrictures-perl all 2.000003-1 [18.1 kB] Get:1113 http://deb.debian.org/debian stretch/main amd64 libmoo-perl all 2.002005-1 [67.0 kB] Get:1114 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-perl all 1.000005-1 [271 kB] Get:1115 http://deb.debian.org/debian stretch/main amd64 libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:1116 http://deb.debian.org/debian stretch/main amd64 libarray-utils-perl all 0.5-1 [6254 B] Get:1117 http://deb.debian.org/debian stretch/main amd64 libasync-interrupt-perl amd64 1.21-1+b2 [33.9 kB] Get:1118 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:1119 http://deb.debian.org/debian stretch/main amd64 libvariable-magic-perl amd64 0.61-1 [45.1 kB] Get:1120 http://deb.debian.org/debian stretch/main amd64 libb-hooks-endofscope-perl all 0.21-1 [16.3 kB] Get:1121 http://deb.debian.org/debian stretch/main amd64 libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:1122 http://deb.debian.org/debian stretch/main amd64 libstaden-read11 amd64 1.14.8-2 [311 kB] Get:1123 http://deb.debian.org/debian stretch/main amd64 libbio-scf-perl amd64 1.03-3 [20.3 kB] Get:1124 http://deb.debian.org/debian stretch/main amd64 libcarp-clan-perl all 6.06-1 [12.9 kB] Get:1125 http://deb.debian.org/debian stretch/main amd64 libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:1126 http://deb.debian.org/debian stretch/main amd64 libblas-dev amd64 3.7.0-2 [162 kB] Get:1127 http://deb.debian.org/debian stretch/main amd64 libzstd1 amd64 1.1.2-1 [193 kB] Get:1128 http://deb.debian.org/debian stretch/main amd64 libblosc1 amd64 1.11.1+ds2-1 [41.0 kB] Get:1129 http://deb.debian.org/debian stretch/main amd64 libboost-atomic1.62.0 amd64 1.62.0+dfsg-4 [30.5 kB] Get:1130 http://deb.debian.org/debian stretch/main amd64 libboost-mpi1.62.0 amd64 1.62.0+dfsg-4 [70.6 kB] Get:1131 http://deb.debian.org/debian stretch/main amd64 libboost-timer1.62.0 amd64 1.62.0+dfsg-4 [34.5 kB] Get:1132 http://deb.debian.org/debian stretch/main amd64 libbpp-core2v5 amd64 2.2.0-3 [540 kB] Get:1133 http://deb.debian.org/debian stretch/main amd64 libbpp-seq9v5 amd64 2.2.0-1+b1 [485 kB] Get:1134 http://deb.debian.org/debian stretch/main amd64 libbpp-phyl9v5 amd64 2.2.0-1+b1 [1514 kB] Get:1135 http://deb.debian.org/debian stretch/main amd64 libbpp-seq-omics1v5 amd64 2.2.0-1 [249 kB] Get:1136 http://deb.debian.org/debian stretch/main amd64 libbpp-phyl-omics1v5 amd64 2.2.0-2 [67.6 kB] Get:1137 http://deb.debian.org/debian stretch/main amd64 libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:1138 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:1139 http://deb.debian.org/debian stretch/main amd64 libcaca0 amd64 0.99.beta19-2.1~deb9u1 [347 kB] Get:1140 http://deb.debian.org/debian stretch/main amd64 libcapture-tiny-perl all 0.44-1 [25.4 kB] Get:1141 http://deb.debian.org/debian stretch/main amd64 libcfitsio5 amd64 3.410-1 [517 kB] Get:1142 http://deb.debian.org/debian stretch/main amd64 libfcgi-perl amd64 0.78-2 [38.2 kB] Get:1143 http://deb.debian.org/debian stretch/main amd64 libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:1144 http://deb.debian.org/debian stretch/main amd64 libclass-c3-perl all 0.32-1 [22.1 kB] Get:1145 http://deb.debian.org/debian stretch/main amd64 libclass-c3-xs-perl amd64 0.14-1+b1 [16.3 kB] Get:1146 http://deb.debian.org/debian stretch/main amd64 libclass-data-inheritable-perl all 0.08-2 [9296 B] Get:1147 http://deb.debian.org/debian stretch/main amd64 libclass-inspector-perl all 1.31-1 [18.7 kB] Get:1148 http://deb.debian.org/debian stretch/main amd64 libparams-util-perl amd64 1.07-3+b1 [22.7 kB] Get:1149 http://deb.debian.org/debian stretch/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:1150 http://deb.debian.org/debian stretch/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:1151 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-perl all 0.37-1 [20.8 kB] Get:1152 http://deb.debian.org/debian stretch/main amd64 libclass-load-perl all 0.23-1 [15.9 kB] Get:1153 http://deb.debian.org/debian stretch/main amd64 libclass-load-xs-perl amd64 0.09-2+b1 [14.4 kB] Get:1154 http://deb.debian.org/debian stretch/main amd64 libclass-tiny-perl all 1.006-1 [18.8 kB] Get:1155 http://deb.debian.org/debian stretch/main amd64 libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:1156 http://deb.debian.org/debian stretch/main amd64 libcommons-collections4-java all 4.1-1 [656 kB] Get:1157 http://deb.debian.org/debian stretch/main amd64 libcommons-configuration-java all 1.10-4 [331 kB] Get:1158 http://deb.debian.org/debian stretch/main amd64 libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:1159 http://deb.debian.org/debian stretch/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:1160 http://deb.debian.org/debian stretch/main amd64 libcrypt-rc4-perl all 2.02-2 [8150 B] Get:1161 http://deb.debian.org/debian stretch/main amd64 libcrypto++6 amd64 5.6.4-7 [829 kB] Get:1162 http://deb.debian.org/debian stretch/main amd64 libcupsfilters1 amd64 1.11.6-3+deb9u1 [129 kB] Get:1163 http://deb.debian.org/debian stretch/main amd64 libdate-calc-perl all 6.4-1 [194 kB] Get:1164 http://deb.debian.org/debian stretch/main amd64 libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:1165 http://deb.debian.org/debian stretch/main amd64 libdate-manip-perl all 6.57-1 [911 kB] Get:1166 http://deb.debian.org/debian stretch/main amd64 libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:1167 http://deb.debian.org/debian stretch/main amd64 libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:1168 http://deb.debian.org/debian stretch/main amd64 libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:1169 http://deb.debian.org/debian stretch/main amd64 libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:1170 http://deb.debian.org/debian stretch/main amd64 libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:1171 http://deb.debian.org/debian stretch/main amd64 libmro-compat-perl all 0.12-1 [13.2 kB] Get:1172 http://deb.debian.org/debian stretch/main amd64 libsub-identify-perl amd64 0.12-2+b1 [11.5 kB] Get:1173 http://deb.debian.org/debian stretch/main amd64 libdevel-overloadinfo-perl all 0.004-1 [7270 B] Get:1174 http://deb.debian.org/debian stretch/main amd64 libsub-name-perl amd64 0.21-1 [13.1 kB] Get:1175 http://deb.debian.org/debian stretch/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:1176 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-perl all 0.986-1 [49.9 kB] Get:1177 http://deb.debian.org/debian stretch/main amd64 libdevel-partialdump-perl all 0.18-2 [14.6 kB] Get:1178 http://deb.debian.org/debian stretch/main amd64 libdevel-stacktrace-perl all 2.0200-1 [27.3 kB] Get:1179 http://deb.debian.org/debian stretch/main amd64 libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:1180 http://deb.debian.org/debian stretch/main amd64 libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:1181 http://deb.debian.org/debian stretch/main amd64 libdjvulibre-text all 3.5.27.1-7 [60.7 kB] Get:1182 http://deb.debian.org/debian stretch/main amd64 libdjvulibre21 amd64 3.5.27.1-7 [568 kB] Get:1183 http://deb.debian.org/debian stretch/main amd64 libisorelax-java all 20041111-9 [62.4 kB] Get:1184 http://deb.debian.org/debian stretch/main amd64 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:1185 http://deb.debian.org/debian stretch/main amd64 libmsv-java all 2009.1+dfsg1-5 [771 kB] Get:1186 http://deb.debian.org/debian stretch/main amd64 libxpp2-java all 2.1.10-7 [147 kB] Get:1187 http://deb.debian.org/debian stretch/main amd64 libxpp3-java all 1.1.4c-2 [349 kB] Get:1188 http://deb.debian.org/debian stretch/main amd64 libdom4j-java all 1.6.1+dfsg.3-2+deb9u1 [348 kB] Get:1189 http://deb.debian.org/debian stretch/main amd64 libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:1190 http://deb.debian.org/debian stretch/main amd64 libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:1191 http://deb.debian.org/debian stretch/main amd64 libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:1192 http://deb.debian.org/debian stretch/main amd64 libemail-date-format-perl all 1.005-1 [7050 B] Get:1193 http://deb.debian.org/debian stretch/main amd64 libenv-path-perl all 0.19-1 [22.0 kB] Get:1194 http://deb.debian.org/debian stretch/main amd64 liberfa1 amd64 1.3.0-2 [115 kB] Get:1195 http://deb.debian.org/debian stretch/main amd64 libeval-closure-perl all 0.14-1 [11.5 kB] Get:1196 http://deb.debian.org/debian stretch/main amd64 libexception-class-perl all 1.42-1 [31.5 kB] Get:1197 http://deb.debian.org/debian stretch/main amd64 libexpat1-dev amd64 2.2.0-2+deb9u3 [134 kB] Get:1198 http://deb.debian.org/debian stretch/main amd64 libfastutil-java all 7.0.13-1 [14.4 MB] Get:1199 http://deb.debian.org/debian stretch/main amd64 libfile-chdir-perl all 0.1008-1 [13.3 kB] Get:1200 http://deb.debian.org/debian stretch/main amd64 libfile-copy-link-perl all 0.140-2 [16.1 kB] Get:1201 http://deb.debian.org/debian stretch/main amd64 libfile-desktopentry-perl all 0.22-1 [19.2 kB] Get:1202 http://deb.debian.org/debian stretch/main amd64 libfile-fcntllock-perl amd64 0.22-3+b2 [35.3 kB] Get:1203 http://deb.debian.org/debian stretch/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:1204 http://deb.debian.org/debian stretch/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:1205 http://deb.debian.org/debian stretch/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:1206 http://deb.debian.org/debian stretch/main amd64 libfile-grep-perl all 0.02-1 [7654 B] Get:1207 http://deb.debian.org/debian stretch/main amd64 libfile-homedir-perl all 1.00-1 [48.9 kB] Get:1208 http://deb.debian.org/debian stretch/main amd64 libfile-mimeinfo-perl all 0.27-1 [50.2 kB] Get:1209 http://deb.debian.org/debian stretch/main amd64 libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:1210 http://deb.debian.org/debian stretch/main amd64 libfile-slurper-perl all 0.009-1 [7850 B] Get:1211 http://deb.debian.org/debian stretch/main amd64 libfindbin-libs-perl all 2.150-1 [28.7 kB] Get:1212 http://deb.debian.org/debian stretch/main amd64 libfltk1.3 amd64 1.3.4-4 [550 kB] Get:1213 http://deb.debian.org/debian stretch/main amd64 libfltk-images1.3 amd64 1.3.4-4 [57.9 kB] Get:1214 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:1215 http://deb.debian.org/debian stretch/main amd64 libfreecontact0v5 amd64 1.0.21-5 [70.1 kB] Get:1216 http://deb.debian.org/debian stretch/main amd64 libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:1217 http://deb.debian.org/debian stretch/main amd64 libfribidi0 amd64 0.19.7-1+deb9u1 [45.6 kB] Get:1218 http://deb.debian.org/debian stretch/main amd64 libftgl2 amd64 2.1.3~rc5-4+nmu1.1 [98.3 kB] Get:1219 http://deb.debian.org/debian stretch/main amd64 libfuse2 amd64 2.9.7-1+deb9u2 [126 kB] Get:1220 http://deb.debian.org/debian stretch/main amd64 libg20 amd64 0.72-6 [42.5 kB] Get:1221 http://deb.debian.org/debian stretch/main amd64 libgail18 amd64 2.24.31-2 [54.1 kB] Get:1222 http://deb.debian.org/debian stretch/main amd64 libgail-common amd64 2.24.31-2 [153 kB] Get:1223 http://deb.debian.org/debian stretch/main amd64 libsvg-perl all 2.64-1 [69.8 kB] Get:1224 http://deb.debian.org/debian stretch/main amd64 libgd-svg-perl all 0.33-1 [64.8 kB] Get:1225 http://deb.debian.org/debian stretch/main amd64 libgenome-1.3-0v5 amd64 1.3.1-9 [111 kB] Get:1226 http://deb.debian.org/debian stretch/main amd64 libgetopt-java all 1.0.14+dfsg-3 [24.9 kB] Get:1227 http://deb.debian.org/debian stretch/main amd64 libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:1228 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:1229 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:1230 http://deb.debian.org/debian stretch/main amd64 libgmpxx4ldbl amd64 2:6.1.2+dfsg-1 [22.2 kB] Get:1231 http://deb.debian.org/debian stretch/main amd64 libgmp-dev amd64 2:6.1.2+dfsg-1 [631 kB] Get:1232 http://deb.debian.org/debian stretch/main amd64 libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:1233 http://deb.debian.org/debian stretch/main amd64 libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:1234 http://deb.debian.org/debian stretch/main amd64 libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:1235 http://deb.debian.org/debian stretch/main amd64 libxml-twig-perl all 1:3.50-1 [179 kB] Get:1236 http://deb.debian.org/debian stretch/main amd64 libxml-xpath-perl all 1.40-1 [69.2 kB] Get:1237 http://deb.debian.org/debian stretch/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get:1238 http://deb.debian.org/debian stretch/main amd64 libyaml-perl all 1.21-1 [64.8 kB] Get:1239 http://deb.debian.org/debian stretch/main amd64 libgo-perl all 0.15-5 [268 kB] Get:1240 http://deb.debian.org/debian stretch/main amd64 libgraph-perl all 1:0.96-2 [126 kB] Get:1241 http://deb.debian.org/debian stretch/main amd64 libparse-yapp-perl all 1.05-12 [50.5 kB] Get:1242 http://deb.debian.org/debian stretch/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:1243 http://deb.debian.org/debian stretch/main amd64 libgraph-readwrite-perl all 2.09-1 [44.7 kB] Get:1244 http://deb.debian.org/debian stretch/main amd64 libntlm0 amd64 1.4-8 [20.9 kB] Get:1245 http://deb.debian.org/debian stretch/main amd64 libgsasl7 amd64 1.8.0-8+b2 [207 kB] Get:1246 http://deb.debian.org/debian stretch/main amd64 libgsl-dev amd64 2.3+dfsg-1 [992 kB] Get:1247 http://deb.debian.org/debian stretch/main amd64 libgtk-3-bin amd64 3.22.11-1 [110 kB] Get:1248 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-bin amd64 2.24.31-2 [47.1 kB] Get:1249 http://deb.debian.org/debian stretch/main amd64 libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:1250 http://deb.debian.org/debian stretch/main amd64 libguard-perl amd64 1.023-1+b2 [15.8 kB] Get:1251 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:1252 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:1253 http://deb.debian.org/debian stretch/main amd64 libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:1254 http://deb.debian.org/debian stretch/main amd64 libicu-dev amd64 57.1-6+deb9u4 [16.5 MB] Get:1255 http://deb.debian.org/debian stretch/main amd64 libilmbase12 amd64 2.2.0-12 [85.3 kB] Get:1256 http://deb.debian.org/debian stretch/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:1257 http://deb.debian.org/debian stretch/main amd64 libio-stringy-perl all 2.111-2 [61.2 kB] Get:1258 http://deb.debian.org/debian stretch/main amd64 libipc-shareable-perl all 0.61-1 [35.4 kB] Get:1259 http://deb.debian.org/debian stretch/main amd64 libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:1260 http://deb.debian.org/debian stretch/main amd64 libjline-java all 1.0-2 [69.5 kB] Get:1261 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:1262 http://deb.debian.org/debian stretch/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:1263 http://deb.debian.org/debian stretch/main amd64 libjs-bootstrap all 3.3.7+dfsg-2+deb9u2 [277 kB] Get:1264 http://deb.debian.org/debian stretch/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:1265 http://deb.debian.org/debian stretch/main amd64 libjs-es5-shim all 4.5.9-1 [41.3 kB] Get:1266 http://deb.debian.org/debian stretch/main amd64 libjs-json all 0~20160510-1 [24.2 kB] Get:1267 http://deb.debian.org/debian stretch/main amd64 libtypes-serialiser-perl all 1.0-1 [12.7 kB] Get:1268 http://deb.debian.org/debian stretch/main amd64 libjson-xs-perl amd64 3.030-1 [91.6 kB] Get:1269 http://deb.debian.org/debian stretch/main amd64 libvecmath-java all 1.5.2-5 [76.9 kB] Get:1270 http://deb.debian.org/debian stretch/main amd64 libjung-free-java all 2.0.1+dfsg-1 [976 kB] Get:1271 http://deb.debian.org/debian stretch/main amd64 libjxr0 amd64 1.1-6+b1 [160 kB] Get:1272 http://deb.debian.org/debian stretch/main amd64 libjxr-tools amd64 1.1-6+b1 [17.0 kB] Get:1273 http://deb.debian.org/debian stretch/main amd64 libmbedcrypto0 amd64 2.4.2-1+deb9u3 [171 kB] Get:1274 http://deb.debian.org/debian stretch/main amd64 libmbedx509-0 amd64 2.4.2-1+deb9u3 [70.7 kB] Get:1275 http://deb.debian.org/debian stretch/main amd64 libmbedtls10 amd64 2.4.2-1+deb9u3 [102 kB] Get:1276 http://deb.debian.org/debian stretch/main amd64 libmbedtls-dev amd64 2.4.2-1+deb9u3 [161 kB] Get:1277 http://deb.debian.org/debian stretch/main amd64 libkdf5-2 amd64 2.8.1+dfsg-2 [13.6 kB] Get:1278 http://deb.debian.org/debian stretch/main amd64 libkyotocabinet16v5 amd64 1.2.76-4.2+b1 [298 kB] Get:1279 http://deb.debian.org/debian stretch/main amd64 liblapack-dev amd64 3.7.0-2 [2170 kB] Get:1280 http://deb.debian.org/debian stretch/main amd64 liblog-dispatch-perl all 2.58-1 [72.5 kB] Get:1281 http://deb.debian.org/debian stretch/main amd64 liblog-log4perl-perl all 1.48-1+deb9u1 [376 kB] Get:1282 http://deb.debian.org/debian stretch/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:1283 http://deb.debian.org/debian stretch/main amd64 liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:1284 http://deb.debian.org/debian stretch/main amd64 libopenexr22 amd64 2.2.0-11+b1 [577 kB] Get:1285 http://deb.debian.org/debian stretch/main amd64 libwmf0.2-7 amd64 0.2.8.4-10.6 [167 kB] Get:1286 http://deb.debian.org/debian stretch/main amd64 libmagickcore-6.q16-3-extra amd64 8:6.9.7.4+dfsg-11+deb9u8 [191 kB] Get:1287 http://deb.debian.org/debian stretch/main amd64 libsys-hostname-long-perl all 1.5-1 [12.0 kB] Get:1288 http://deb.debian.org/debian stretch/main amd64 libmail-sendmail-perl all 0.79.16-2 [24.9 kB] Get:1289 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:1290 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:1291 http://deb.debian.org/debian stretch/main amd64 mailutils-common all 1:3.1.1-1 [642 kB] Get:1292 http://deb.debian.org/debian stretch/main amd64 libmailutils5 amd64 1:3.1.1-1 [817 kB] Get:1293 http://deb.debian.org/debian stretch/main amd64 libmath-derivative-perl all 0.04-2 [7208 B] Get:1294 http://deb.debian.org/debian stretch/main amd64 libmath-spline-perl all 0.02-1 [7992 B] Get:1295 http://deb.debian.org/debian stretch/main amd64 libmuscle-3.7-1 amd64 3.7+4565-2 [252 kB] Get:1296 http://deb.debian.org/debian stretch/main amd64 libmems-1.6-1v5 amd64 1.6.0+4725-4 [644 kB] Get:1297 http://deb.debian.org/debian stretch/main amd64 libmime-lite-perl all 3.030-2 [72.3 kB] Get:1298 http://deb.debian.org/debian stretch/main amd64 libmime-tools-perl all 5.508-1 [212 kB] Get:1299 http://deb.debian.org/debian stretch/main amd64 libmime-types-perl all 2.13-1 [61.7 kB] Get:1300 http://deb.debian.org/debian stretch/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:1301 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-conflicts-perl all 0.003-1 [6882 B] Get:1302 http://deb.debian.org/debian stretch/main amd64 libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB] Get:1303 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-xs-perl amd64 0.28-3+b1 [17.9 kB] Get:1304 http://deb.debian.org/debian stretch/main amd64 libmoose-perl amd64 2.1807-1 [801 kB] Get:1305 http://deb.debian.org/debian stretch/main amd64 libnanoxml2-java all 2.2.3.dfsg-5 [58.1 kB] Get:1306 http://deb.debian.org/debian stretch/main amd64 libncbi-vdb2 amd64 2.8.1+dfsg-2 [1037 kB] Get:1307 http://deb.debian.org/debian stretch/main amd64 libncbi-wvdb2 amd64 2.8.1+dfsg-2 [939 kB] Get:1308 http://deb.debian.org/debian stretch/main amd64 libncbi6 amd64 6.1.20170106+dfsg1-0+deb9u1 [4024 kB] Get:1309 http://deb.debian.org/debian stretch/main amd64 libtinfo-dev amd64 6.0+20161126-1+deb9u2 [79.2 kB] Get:1310 http://deb.debian.org/debian stretch/main amd64 libncurses5-dev amd64 6.0+20161126-1+deb9u2 [175 kB] Get:1311 http://deb.debian.org/debian stretch/main amd64 libncursesw5-dev amd64 6.0+20161126-1+deb9u2 [200 kB] Get:1312 http://deb.debian.org/debian stretch/main amd64 libnet-dbus-perl amd64 1.1.0-4+b1 [179 kB] Get:1313 http://deb.debian.org/debian stretch/main amd64 libnetpbm10 amd64 2:10.0-15.3+b2 [86.7 kB] Get:1314 http://deb.debian.org/debian stretch/main amd64 libole-storage-lite-perl all 0.19-1+deb9u1 [23.4 kB] Get:1315 http://deb.debian.org/debian stretch/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:1316 http://deb.debian.org/debian stretch/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:1317 http://deb.debian.org/debian stretch/main amd64 libpam-cap amd64 1:2.25-1 [13.5 kB] Get:1318 http://deb.debian.org/debian stretch/main amd64 libpcre32-3 amd64 2:8.39-3 [248 kB] Get:1319 http://deb.debian.org/debian stretch/main amd64 libpcre3-dev amd64 2:8.39-3 [647 kB] Get:1320 http://deb.debian.org/debian stretch/main amd64 libperl4-corelibs-perl all 0.003-2+deb9u1 [38.0 kB] Get:1321 http://deb.debian.org/debian stretch/main amd64 libperlio-utf8-strict-perl amd64 0.006-1+b2 [11.3 kB] Get:1322 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:1323 http://deb.debian.org/debian stretch/main amd64 libpng-dev amd64 1.6.28-1+deb9u1 [250 kB] Get:1324 http://deb.debian.org/debian stretch/main amd64 libpng-tools amd64 1.6.28-1+deb9u1 [133 kB] Get:1325 http://deb.debian.org/debian stretch/main amd64 libpod-coverage-perl all 0.23-1 [23.9 kB] Get:1326 http://deb.debian.org/debian stretch/main amd64 libpostscript-perl all 0.06-2 [31.4 kB] Get:1327 http://deb.debian.org/debian stretch/main amd64 libprocessing-core-java all 1.2.1-1 [173 kB] Get:1328 http://deb.debian.org/debian stretch/main amd64 libpython2.7-dev amd64 2.7.13-2+deb9u3 [28.2 MB] Get:1329 http://deb.debian.org/debian stretch/main amd64 libpython-dev amd64 2.7.13-2 [20.1 kB] Get:1330 http://deb.debian.org/debian stretch/main amd64 qtchooser amd64 63-g13a3d08-1 [25.2 kB] Get:1331 http://deb.debian.org/debian stretch/main amd64 qdbus amd64 4:4.8.7+dfsg-11 [76.8 kB] Get:1332 http://deb.debian.org/debian stretch/main amd64 libqt4-dbus amd64 4:4.8.7+dfsg-11 [52.7 kB] Get:1333 http://deb.debian.org/debian stretch/main amd64 libqt4-script amd64 4:4.8.7+dfsg-11 [861 kB] Get:1334 http://deb.debian.org/debian stretch/main amd64 libqt4-declarative amd64 4:4.8.7+dfsg-11 [1131 kB] Get:1335 http://deb.debian.org/debian stretch/main amd64 libqt4-designer amd64 4:4.8.7+dfsg-11 [3679 kB] Get:1336 http://deb.debian.org/debian stretch/main amd64 libqt4-help amd64 4:4.8.7+dfsg-11 [252 kB] Get:1337 http://deb.debian.org/debian stretch/main amd64 libqt4-scripttools amd64 4:4.8.7+dfsg-11 [270 kB] Get:1338 http://deb.debian.org/debian stretch/main amd64 libqt4-sql-mysql amd64 4:4.8.7+dfsg-11 [76.9 kB] Get:1339 http://deb.debian.org/debian stretch/main amd64 libqt4-svg amd64 4:4.8.7+dfsg-11 [185 kB] Get:1340 http://deb.debian.org/debian stretch/main amd64 libqt5xml5 amd64 5.7.1+dfsg-3+deb9u2 [120 kB] Get:1341 http://deb.debian.org/debian stretch/main amd64 libqtassistantclient4 amd64 4.6.3-7+b1 [12.9 kB] Get:1342 http://deb.debian.org/debian stretch/main amd64 librdp-taxonomy-tree-java all 1.2.0-1 [17.4 kB] Get:1343 http://deb.debian.org/debian stretch/main amd64 libreadline-dev amd64 7.0-3 [132 kB] Get:1344 http://deb.debian.org/debian stretch/main amd64 librelion+gui-1.4-1 amd64 1.4+dfsg-2+b2 [653 kB] Get:1345 http://deb.debian.org/debian stretch/main amd64 librhino-java all 1.7.7.1-1 [1160 kB] Get:1346 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:1347 http://deb.debian.org/debian stretch/main amd64 libsaxon-java all 1:6.5.5-10 [1076 kB] Get:1348 http://deb.debian.org/debian stretch/main amd64 libsdl1.2debian amd64 1.2.15+dfsg1-4 [185 kB] Get:1349 http://deb.debian.org/debian stretch/main amd64 libsmithwaterman0 amd64 0.0+20160702-1+b1 [33.0 kB] Get:1350 http://deb.debian.org/debian stretch/main amd64 libsnp-sites1 amd64 2.3.2-1 [11.1 kB] Get:1351 http://deb.debian.org/debian stretch/main amd64 libtask-weaken-perl all 1.04-1 [7990 B] Get:1352 http://deb.debian.org/debian stretch/main amd64 libsoap-lite-perl all 1.20-1 [259 kB] Get:1353 http://deb.debian.org/debian stretch/main amd64 libsort-naturally-perl all 1.03-1 [13.9 kB] Get:1354 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:1355 http://deb.debian.org/debian stretch/main amd64 libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:1356 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:1357 http://deb.debian.org/debian stretch/main amd64 libsprng2 amd64 2.0a-10 [75.6 kB] Get:1358 http://deb.debian.org/debian stretch/main amd64 libsquizz amd64 0.99c+dfsg-1 [265 kB] Get:1359 http://deb.debian.org/debian stretch/main amd64 libssw-java amd64 1.1-1+b1 [13.8 kB] Get:1360 http://deb.debian.org/debian stretch/main amd64 libsub-uplevel-perl all 0.2600-1 [16.1 kB] Get:1361 http://deb.debian.org/debian stretch/main amd64 libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:1362 http://deb.debian.org/debian stretch/main amd64 libsvg-graph-perl all 0.02-2 [130 kB] Get:1363 http://deb.debian.org/debian stretch/main amd64 libtabixpp0 amd64 1.0.0-2 [7864 B] Get:1364 http://deb.debian.org/debian stretch/main amd64 libtest-deep-perl all 1.126-1 [48.4 kB] Get:1365 http://deb.debian.org/debian stretch/main amd64 libtext-diff-perl all 1.44-1 [27.4 kB] Get:1366 http://deb.debian.org/debian stretch/main amd64 libtest-differences-perl all 0.64-1 [18.0 kB] Get:1367 http://deb.debian.org/debian stretch/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:1368 http://deb.debian.org/debian stretch/main amd64 libtest-file-perl all 1.442-1 [19.8 kB] Get:1369 http://deb.debian.org/debian stretch/main amd64 libtest-files-perl all 0.14-1 [11.2 kB] Get:1370 http://deb.debian.org/debian stretch/main amd64 libtest-warn-perl all 0.32-1 [15.1 kB] Get:1371 http://deb.debian.org/debian stretch/main amd64 libtest-simple-perl all 1.302075-1 [298 kB] Get:1372 http://deb.debian.org/debian stretch/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:1373 http://deb.debian.org/debian stretch/main amd64 libtest-output-perl all 1.03-1 [13.9 kB] Get:1374 http://deb.debian.org/debian stretch/main amd64 libtest-pod-perl all 1.51-1 [14.7 kB] Get:1375 http://deb.debian.org/debian stretch/main amd64 libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:1376 http://deb.debian.org/debian stretch/main amd64 libtext-csv-perl all 1.33-2 [50.5 kB] Get:1377 http://deb.debian.org/debian stretch/main amd64 libtext-csv-xs-perl amd64 1.26-1 [114 kB] Get:1378 http://deb.debian.org/debian stretch/main amd64 libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:1379 http://deb.debian.org/debian stretch/main amd64 libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:1380 http://deb.debian.org/debian stretch/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:1381 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:1382 http://deb.debian.org/debian stretch/main amd64 libutempter0 amd64 1.1.6-3 [7812 B] Get:1383 http://deb.debian.org/debian stretch/main amd64 libvcflib1 amd64 1.0.0~rc1+dfsg1-3 [130 kB] Get:1384 http://deb.debian.org/debian stretch/main amd64 libvcflib-tools amd64 1.0.0~rc1+dfsg1-3 [620 kB] Get:1385 http://deb.debian.org/debian stretch/main amd64 libvibrant6b amd64 6.1.20170106+dfsg1-0+deb9u1 [1275 kB] Get:1386 http://deb.debian.org/debian stretch/main amd64 libvte-common all 1:0.28.2-5 [435 kB] Get:1387 http://deb.debian.org/debian stretch/main amd64 libvte9 amd64 1:0.28.2-5+b2 [618 kB] Get:1388 http://deb.debian.org/debian stretch/main amd64 libwacom-bin amd64 0.22-1+b1 [6150 B] Get:1389 http://deb.debian.org/debian stretch/main amd64 libwcs5 amd64 5.16-1 [263 kB] Get:1390 http://deb.debian.org/debian stretch/main amd64 libwebpdemux2 amd64 0.5.2-1 [73.7 kB] Get:1391 http://deb.debian.org/debian stretch/main amd64 libwebpmux2 amd64 0.5.2-1 [83.9 kB] Get:1392 http://deb.debian.org/debian stretch/main amd64 libx11-protocol-perl all 0.56-7 [150 kB] Get:1393 http://deb.debian.org/debian stretch/main amd64 libxerces-c3.1 amd64 3.1.4+debian-2+deb9u1 [842 kB] Get:1394 http://deb.debian.org/debian stretch/main amd64 libxfont1 amd64 1:1.5.2-4 [136 kB] Get:1395 http://deb.debian.org/debian stretch/main amd64 libxml-perl all 0.08-2 [113 kB] Get:1396 http://deb.debian.org/debian stretch/main amd64 libxml-regexp-perl all 0.04-1 [8370 B] Get:1397 http://deb.debian.org/debian stretch/main amd64 libxml-dom-perl all 1.44-2 [179 kB] Get:1398 http://deb.debian.org/debian stretch/main amd64 libxml-checker-perl all 0.13-6 [44.9 kB] Get:1399 http://deb.debian.org/debian stretch/main amd64 libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:1400 http://deb.debian.org/debian stretch/main amd64 libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:1401 http://deb.debian.org/debian stretch/main amd64 libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:1402 http://deb.debian.org/debian stretch/main amd64 libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:1403 http://deb.debian.org/debian stretch/main amd64 libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:1404 http://deb.debian.org/debian stretch/main amd64 libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:1405 http://deb.debian.org/debian stretch/main amd64 libxom-java all 1.2.10-1 [170 kB] Get:1406 http://deb.debian.org/debian stretch/main amd64 libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:1407 http://deb.debian.org/debian stretch/main amd64 libyaml-tiny-perl all 1.70-1 [32.0 kB] Get:1408 http://deb.debian.org/debian stretch/main amd64 libzeus-jscl-java all 1.72-1 [129 kB] Get:1409 http://deb.debian.org/debian stretch/main amd64 lmodern all 2.004.5-3 [9461 kB] Get:1410 http://deb.debian.org/debian stretch/main amd64 swi-prolog-nox amd64 7.2.3+dfsg-6 [3025 kB] Get:1411 http://deb.debian.org/debian stretch/main amd64 swi-prolog-x amd64 7.2.3+dfsg-6 [2000 kB] Get:1412 http://deb.debian.org/debian stretch/main amd64 swi-prolog amd64 7.2.3+dfsg-6 [17.0 kB] Get:1413 http://deb.debian.org/debian stretch/main amd64 logol-bin amd64 1.7.5-1 [142 kB] Get:1414 http://deb.debian.org/debian stretch/main amd64 loki amd64 2.4.7.4-6+b1 [359 kB] Get:1415 http://deb.debian.org/debian stretch/main amd64 ltrsift amd64 1.0.2-7 [104 kB] Get:1416 http://deb.debian.org/debian stretch/main amd64 lynx-common all 2.8.9dev11-1 [1098 kB] Get:1417 http://deb.debian.org/debian stretch/main amd64 macs amd64 2.1.1.20160309-1 [1011 kB] Get:1418 http://deb.debian.org/debian stretch/main amd64 macsyfinder all 1.0.2-3 [7155 kB] Get:1419 http://deb.debian.org/debian stretch/main amd64 maffilter amd64 1.1.0-1+dfsg-2+b2 [277 kB] Get:1420 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:1421 http://deb.debian.org/debian stretch/main amd64 mailutils amd64 1:3.1.1-1 [573 kB] Get:1422 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] Get:1423 http://deb.debian.org/debian stretch/main amd64 r-cran-codetools all 0.2-15-1 [46.2 kB] Get:1424 http://deb.debian.org/debian stretch/main amd64 r-cran-iterators all 1.0.8-1 [306 kB] Get:1425 http://deb.debian.org/debian stretch/main amd64 r-cran-foreach all 1.4.3-1 [371 kB] Get:1426 http://deb.debian.org/debian stretch/main amd64 r-cran-gam amd64 1.14-1 [203 kB] Get:1427 http://deb.debian.org/debian stretch/main amd64 r-cran-inline all 0.3.14-1 [91.8 kB] Get:1428 http://deb.debian.org/debian stretch/main amd64 seqtk amd64 1.2-1 [28.6 kB] Get:1429 http://deb.debian.org/debian stretch/main amd64 r-cran-rcppgsl amd64 0.3.2-2 [306 kB] Get:1430 http://deb.debian.org/debian stretch/main amd64 mapdamage all 2.0.6+dfsg-2 [38.8 kB] Get:1431 http://deb.debian.org/debian stretch/main amd64 mapsembler2 amd64 2.2.3+dfsg-3+b1 [250 kB] Get:1432 http://deb.debian.org/debian stretch/main amd64 maq amd64 0.7.1-7 [311 kB] Get:1433 http://deb.debian.org/debian stretch/main amd64 maqview amd64 0.2.5-7+b1 [113 kB] Get:1434 http://deb.debian.org/debian stretch/main amd64 massxpert-data all 3.6.1-1 [87.5 kB] Get:1435 http://deb.debian.org/debian stretch/main amd64 massxpert amd64 3.6.1-1 [877 kB] Get:1436 http://deb.debian.org/debian stretch/main amd64 progressivemauve amd64 1.2.0+4713-2+b2 [828 kB] Get:1437 http://deb.debian.org/debian stretch/main amd64 mauve-aligner amd64 2.4.0+4734-3 [493 kB] Get:1438 http://deb.debian.org/debian stretch/main amd64 mcl amd64 1:14-137-1+b1 [619 kB] Get:1439 http://deb.debian.org/debian stretch/main amd64 melting amd64 4.3.1+dfsg-2+b1 [663 kB] Get:1440 http://deb.debian.org/debian stretch/main amd64 mesa-utils amd64 8.3.0-3 [32.7 kB] Get:1441 http://deb.debian.org/debian stretch/main amd64 metaphlan2-data all 2.6.0+ds-2 [204 MB] Get:1442 http://deb.debian.org/debian stretch/main amd64 sphinx-common all 1.4.9-2 [350 kB] Get:1443 http://deb.debian.org/debian stretch/main amd64 pyqi all 0.3.2+dfsg-2 [72.0 kB] Get:1444 http://deb.debian.org/debian stretch/main amd64 python-colorama all 0.3.7-1 [25.7 kB] Get:1445 http://deb.debian.org/debian stretch/main amd64 python-click all 6.6-1 [56.1 kB] Get:1446 http://deb.debian.org/debian stretch/main amd64 python-configparser all 3.3.0r2-2 [62.1 kB] Get:1447 http://deb.debian.org/debian stretch/main amd64 python-future all 0.15.2-4 [347 kB] Get:1448 http://deb.debian.org/debian stretch/main amd64 python-biom-format amd64 2.1.5+dfsg-7 [183 kB] Get:1449 http://deb.debian.org/debian stretch/main amd64 python-msgpack amd64 0.4.8-1 [67.8 kB] Get:1450 http://deb.debian.org/debian stretch/main amd64 python-pandas-lib amd64 0.19.2-5.1 [2275 kB] Get:1451 http://deb.debian.org/debian stretch/main amd64 python-pandas all 0.19.2-5.1 [2616 kB] Get:1452 http://deb.debian.org/debian stretch/main amd64 metaphlan2 all 2.6.0+ds-2 [73.3 MB] Get:1453 http://deb.debian.org/debian stretch/main amd64 metastudent-data all 2.0.1-2 [225 MB] Get:1454 http://deb.debian.org/debian stretch/main amd64 metastudent all 2.0.1-4 [5979 kB] Get:1455 http://deb.debian.org/debian stretch/main amd64 mhap all 2.1.1+dfsg-1 [159 kB] Get:1456 http://deb.debian.org/debian stretch/main amd64 python-matplotlib-venn all 0.11.5-1 [28.8 kB] Get:1457 http://deb.debian.org/debian stretch/main amd64 python-sip amd64 4.18.1+dfsg-2 [88.7 kB] Get:1458 http://deb.debian.org/debian stretch/main amd64 python-qt4 amd64 4.11.4+dfsg-2+b1 [2198 kB] Get:1459 http://deb.debian.org/debian stretch/main amd64 microbegps all 1.0.0-2 [14.2 MB] Get:1460 http://deb.debian.org/debian stretch/main amd64 nast-ier amd64 20101212+dfsg1-1+b1 [20.9 kB] Get:1461 http://deb.debian.org/debian stretch/main amd64 wigeon all 20101212+dfsg1-1 [29.8 kB] Get:1462 http://deb.debian.org/debian stretch/main amd64 microbiomeutil all 20101212+dfsg1-1 [19.0 kB] Get:1463 http://deb.debian.org/debian stretch/main amd64 minia amd64 1.6906-1+b2 [67.9 kB] Get:1464 http://deb.debian.org/debian stretch/main amd64 miniasm amd64 0.2+dfsg-2+b1 [29.5 kB] Get:1465 http://deb.debian.org/debian stretch/main amd64 minimap amd64 0.2-3+b1 [26.8 kB] Get:1466 http://deb.debian.org/debian stretch/main amd64 mipe all 1.1-5 [62.4 kB] Get:1467 http://deb.debian.org/debian stretch/main amd64 mlv-smile amd64 1.47-4+b1 [190 kB] Get:1468 http://deb.debian.org/debian stretch/main amd64 mothur amd64 1.38.1.1-1 [4740 kB] Get:1469 http://deb.debian.org/debian stretch/main amd64 mrbayes amd64 3.2.6+dfsg-1+b4 [588 kB] Get:1470 http://deb.debian.org/debian stretch/main amd64 r-cran-gtools amd64 3.5.0-1 [139 kB] Get:1471 http://deb.debian.org/debian stretch/main amd64 r-cran-gdata all 2.17.0-1 [933 kB] Get:1472 http://deb.debian.org/debian stretch/main amd64 r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:1473 http://deb.debian.org/debian stretch/main amd64 r-cran-catools amd64 1.17.1-1+b1 [160 kB] Get:1474 http://deb.debian.org/debian stretch/main amd64 r-cran-kernsmooth amd64 2.23-15-2 [81.7 kB] Get:1475 http://deb.debian.org/debian stretch/main amd64 r-cran-gplots all 3.0.1-2 [522 kB] Get:1476 http://deb.debian.org/debian stretch/main amd64 r-cran-rocr all 1.0-7-2 [161 kB] Get:1477 http://deb.debian.org/debian stretch/main amd64 murasaki-common all 1.68.6-6 [144 kB] Get:1478 http://deb.debian.org/debian stretch/main amd64 murasaki amd64 1.68.6-6+b4 [479 kB] Get:1479 http://deb.debian.org/debian stretch/main amd64 muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:1480 http://deb.debian.org/debian stretch/main amd64 mustang amd64 3.2.3-1 [113 kB] Get:1481 http://deb.debian.org/debian stretch/main amd64 nanopolish amd64 0.5.0-1+b1 [1915 kB] Get:1482 http://deb.debian.org/debian stretch/main amd64 ncbi-entrez-direct amd64 6.10.20170123+ds-1 [577 kB] Get:1483 http://deb.debian.org/debian stretch/main amd64 ncbi-epcr amd64 2.3.12-1-4 [113 kB] Get:1484 http://deb.debian.org/debian stretch/main amd64 ncbi-tools-bin amd64 6.1.20170106+dfsg1-0+deb9u1 [521 kB] Get:1485 http://deb.debian.org/debian stretch/main amd64 ncbi-tools-x11 amd64 6.1.20170106+dfsg1-0+deb9u1 [1120 kB] Get:1486 http://deb.debian.org/debian stretch/main amd64 ncl-tools amd64 2.1.18+dfsg-2+b1 [104 kB] Get:1487 http://deb.debian.org/debian stretch/main amd64 ncoils amd64 2002-4+b1 [21.4 kB] Get:1488 http://deb.debian.org/debian stretch/main amd64 netpbm amd64 2:10.0-15.3+b2 [1029 kB] Get:1489 http://deb.debian.org/debian stretch/main amd64 njplot amd64 2.4-7 [95.3 kB] Get:1490 http://deb.debian.org/debian stretch/main amd64 notification-daemon amd64 3.20.0-1+b1 [60.5 kB] Get:1491 http://deb.debian.org/debian stretch/main amd64 paraclu amd64 9-1+b2 [10.5 kB] Get:1492 http://deb.debian.org/debian stretch/main amd64 parafly amd64 0.0.2013.01.21-3+b1 [16.4 kB] Get:1493 http://deb.debian.org/debian stretch/main amd64 parsinsert amd64 1.04-2 [59.8 kB] Get:1494 http://deb.debian.org/debian stretch/main amd64 phipack amd64 0.0.20160614-2 [50.6 kB] Get:1495 http://deb.debian.org/debian stretch/main amd64 parsnp amd64 1.2+dfsg-3 [528 kB] Get:1496 http://deb.debian.org/debian stretch/main amd64 python-pbalign all 0.3.0-1 [37.2 kB] Get:1497 http://deb.debian.org/debian stretch/main amd64 pbalign all 0.3.0-1 [7482 B] Get:1498 http://deb.debian.org/debian stretch/main amd64 pbbamtools amd64 0.7.4+ds-1 [116 kB] Get:1499 http://deb.debian.org/debian stretch/main amd64 pbbarcode amd64 0.8.0-4 [26.5 kB] Get:1500 http://deb.debian.org/debian stretch/main amd64 pbdagcon amd64 0.3+20161121+ds-1 [322 kB] Get:1501 http://deb.debian.org/debian stretch/main amd64 python-pbconsensuscore amd64 1.0.2-2 [651 kB] Get:1502 http://deb.debian.org/debian stretch/main amd64 python-pbgenomicconsensus all 2.1.0-1 [45.7 kB] Get:1503 http://deb.debian.org/debian stretch/main amd64 pbgenomicconsensus all 2.1.0-1 [26.6 kB] Get:1504 http://deb.debian.org/debian stretch/main amd64 python-pbh5tools amd64 0.8.0+dfsg-5 [29.0 kB] Get:1505 http://deb.debian.org/debian stretch/main amd64 pbh5tools all 0.8.0+dfsg-5 [8282 B] Get:1506 http://deb.debian.org/debian stretch/main amd64 python-pbsuite-utils all 15.8.24+dfsg-2 [508 kB] Get:1507 http://deb.debian.org/debian stretch/main amd64 pbjelly all 15.8.24+dfsg-2 [1210 kB] Get:1508 http://deb.debian.org/debian stretch/main amd64 python-pbbanana all 15.8.24+dfsg-2 [19.3 kB] Get:1509 http://deb.debian.org/debian stretch/main amd64 python-sortedcontainers all 1.5.7-1 [26.2 kB] Get:1510 http://deb.debian.org/debian stretch/main amd64 python-intervaltree all 2.1.0-2 [32.0 kB] Get:1511 http://deb.debian.org/debian stretch/main amd64 python-intervaltree-bio all 1.0.1-1 [7818 B] Get:1512 http://deb.debian.org/debian stretch/main amd64 pbhoney all 15.8.24+dfsg-2 [1311 kB] Get:1513 http://deb.debian.org/debian stretch/main amd64 pbsim amd64 1.0.3-2 [24.5 kB] Get:1514 http://deb.debian.org/debian stretch/main amd64 pbsuite all 15.8.24+dfsg-2 [4732 B] Get:1515 http://deb.debian.org/debian stretch/main amd64 pdb2pqr amd64 2.1.1+dfsg-2 [373 kB] Get:1516 http://deb.debian.org/debian stretch/main amd64 perl-doc all 5.24.1-3+deb9u7 [7145 kB] Get:1517 http://deb.debian.org/debian stretch/main amd64 perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:1518 http://deb.debian.org/debian stretch/main amd64 perlprimer all 1.2.3-1 [96.7 kB] Get:1519 http://deb.debian.org/debian stretch/main amd64 perm amd64 0.4.0-2 [121 kB] Get:1520 http://deb.debian.org/debian stretch/main amd64 phybin amd64 0.3-1+b1 [1785 kB] Get:1521 http://deb.debian.org/debian stretch/main amd64 phylip amd64 1:3.696+dfsg-5 [942 kB] Get:1522 http://deb.debian.org/debian stretch/main amd64 phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:1523 http://deb.debian.org/debian stretch/main amd64 physamp amd64 0.2.0-1+b1 [233 kB] Get:1524 http://deb.debian.org/debian stretch/main amd64 phyutility amd64 2.7.3-1 [897 kB] Get:1525 http://deb.debian.org/debian stretch/main amd64 picard-tools all 2.8.1+dfsg-1 [7788 B] Get:1526 http://deb.debian.org/debian stretch/main amd64 piler amd64 0~20140707-1+b1 [40.2 kB] Get:1527 http://deb.debian.org/debian stretch/main amd64 pirs-profiles all 2.0.2+dfsg-5.1 [2566 kB] Get:1528 http://deb.debian.org/debian stretch/main amd64 ttf-liberation all 1:1.07.4-2 [9878 B] Get:1529 http://deb.debian.org/debian stretch/main amd64 pirs amd64 2.0.2+dfsg-5.1+b1 [111 kB] Get:1530 http://deb.debian.org/debian stretch/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:1531 http://deb.debian.org/debian stretch/main amd64 placnet all 1.03-2 [10.5 kB] Get:1532 http://deb.debian.org/debian stretch/main amd64 python-tk amd64 2.7.13-1 [27.4 kB] Get:1533 http://deb.debian.org/debian stretch/main amd64 plasmidomics all 0.2.0-5 [6844 B] Get:1534 http://deb.debian.org/debian stretch/main amd64 plast amd64 2.3.1+dfsg-4 [609 kB] Get:1535 http://deb.debian.org/debian stretch/main amd64 plink amd64 1.07-7 [1186 kB] Get:1536 http://deb.debian.org/debian stretch/main amd64 plink1.9 amd64 1.90~b3.45-170113-1 [866 kB] Get:1537 http://deb.debian.org/debian stretch/main amd64 python-pmw all 1.3.2-6 [120 kB] Get:1538 http://deb.debian.org/debian stretch/main amd64 python-opengl all 3.1.0+dfsg-1 [501 kB] Get:1539 http://deb.debian.org/debian stretch/main amd64 pymol-data all 1.8.4.0+dfsg-1 [1322 kB] Get:1540 http://deb.debian.org/debian stretch/main amd64 pymol amd64 1.8.4.0+dfsg-1 [3794 kB] Get:1541 http://deb.debian.org/debian stretch/main amd64 python-lxml amd64 3.7.1-1 [903 kB] Get:1542 http://deb.debian.org/debian stretch/main amd64 python-openbabel amd64 2.3.2+dfsg-3 [809 kB] Get:1543 http://deb.debian.org/debian stretch/main amd64 plip all 1.3.3+dfsg-1 [53.2 kB] Get:1544 http://deb.debian.org/debian stretch/main amd64 poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:1545 http://deb.debian.org/debian stretch/main amd64 python-seaborn all 0.7.1-4 [128 kB] Get:1546 http://deb.debian.org/debian stretch/main amd64 poretools all 0.6.0+dfsg-2 [19.0 kB] Get:1547 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:1548 http://deb.debian.org/debian stretch/main amd64 preview-latex-style all 11.90-1 [200 kB] Get:1549 http://deb.debian.org/debian stretch/main amd64 prime-phylo amd64 1.0.11-4+b3 [856 kB] Get:1550 http://deb.debian.org/debian stretch/main amd64 primer3 amd64 2.3.7-3 [173 kB] Get:1551 http://deb.debian.org/debian stretch/main amd64 proalign amd64 0.603-2 [149 kB] Get:1552 http://deb.debian.org/debian stretch/main amd64 probabel amd64 0.4.5-3+b1 [544 kB] Get:1553 http://deb.debian.org/debian stretch/main amd64 probalign amd64 1.4-5 [65.4 kB] Get:1554 http://deb.debian.org/debian stretch/main amd64 probcons amd64 1.12-11 [107 kB] Get:1555 http://deb.debian.org/debian stretch/main amd64 proda amd64 1.0-10 [60.1 kB] Get:1556 http://deb.debian.org/debian stretch/main amd64 texlive-base all 2016.20170123-5 [15.8 MB] Get:1557 http://deb.debian.org/debian stretch/main amd64 texlive-latex-base all 2016.20170123-5 [861 kB] Get:1558 http://deb.debian.org/debian stretch/main amd64 texlive-generic-recommended all 2016.20170123-5 [2889 kB] Get:1559 http://deb.debian.org/debian stretch/main amd64 texlive-latex-recommended all 2016.20170123-5 [13.2 MB] Get:1560 http://deb.debian.org/debian stretch/main amd64 texlive-pictures all 2016.20170123-5 [3908 kB] Get:1561 http://deb.debian.org/debian stretch/main amd64 texlive-pstricks all 2016.20170123-5 [26.2 MB] Get:1562 http://deb.debian.org/debian stretch/main amd64 prosper all 1.00.4+cvs.2007.05.01-4.1 [420 kB] Get:1563 http://deb.debian.org/debian stretch/main amd64 proteinortho amd64 5.15+dfsg-1 [251 kB] Get:1564 http://deb.debian.org/debian stretch/main amd64 prottest all 3.4.2+dfsg-2 [347 kB] Get:1565 http://deb.debian.org/debian stretch/main amd64 ps2eps amd64 1.68+binaryfree-2 [37.9 kB] Get:1566 http://deb.debian.org/debian stretch/main amd64 psmisc amd64 22.21-2.1+b2 [123 kB] Get:1567 http://deb.debian.org/debian stretch/main amd64 python-wxversion all 3.0.2.0+dfsg-4 [114 kB] Get:1568 http://deb.debian.org/debian stretch/main amd64 python-wxgtk3.0 amd64 3.0.2.0+dfsg-4 [5270 kB] Get:1569 http://deb.debian.org/debian stretch/main amd64 python-lmfit all 0.9.5+dfsg-2 [84.5 kB] Get:1570 http://deb.debian.org/debian stretch/main amd64 pycorrfit amd64 0.9.9+dfsg-2 [820 kB] Get:1571 http://deb.debian.org/debian stretch/main amd64 python-configobj all 5.0.6-2 [35.2 kB] Get:1572 http://deb.debian.org/debian stretch/main amd64 python-ply all 3.9-1 [64.3 kB] Get:1573 http://deb.debian.org/debian stretch/main amd64 python-py all 1.4.32-3 [82.8 kB] Get:1574 http://deb.debian.org/debian stretch/main amd64 python-pytest all 3.0.6-1 [184 kB] Get:1575 http://deb.debian.org/debian stretch/main amd64 python-astropy amd64 1.3-8 [2716 kB] Get:1576 http://deb.debian.org/debian stretch/main amd64 python-multipletau all 0.1.7+ds-1 [11.0 kB] Get:1577 http://deb.debian.org/debian stretch/main amd64 pyscanfcs amd64 0.2.3-3 [541 kB] Get:1578 http://deb.debian.org/debian stretch/main amd64 python-antlr all 2.7.7+dfsg-7 [25.8 kB] Get:1579 http://deb.debian.org/debian stretch/main amd64 python-babel-localedata all 2.3.4+dfsg.1-2 [3402 kB] Get:1580 http://deb.debian.org/debian stretch/main amd64 python-babel all 2.3.4+dfsg.1-2 [82.5 kB] Get:1581 http://deb.debian.org/debian stretch/main amd64 python-biopython-doc all 1.68+dfsg-3 [11.8 MB] Get:1582 http://deb.debian.org/debian stretch/main amd64 python-bs4 all 4.5.3-1 [86.7 kB] Get:1583 http://deb.debian.org/debian stretch/main amd64 python-cairo amd64 1.8.8-2.2 [42.5 kB] Get:1584 http://deb.debian.org/debian stretch/main amd64 python-cffi-backend amd64 1.9.1-2 [69.0 kB] Get:1585 http://deb.debian.org/debian stretch/main amd64 python-crypto amd64 2.6.1-7 [259 kB] Get:1586 http://deb.debian.org/debian stretch/main amd64 python-idna all 2.2-1 [32.6 kB] Get:1587 http://deb.debian.org/debian stretch/main amd64 python-ipaddress all 1.0.17-1 [18.1 kB] Get:1588 http://deb.debian.org/debian stretch/main amd64 python-pyasn1 all 0.1.9-2 [51.8 kB] Get:1589 http://deb.debian.org/debian stretch/main amd64 python-setuptools all 33.1.1-1 [297 kB] Get:1590 http://deb.debian.org/debian stretch/main amd64 python-cryptography amd64 1.7.1-3+deb9u2 [212 kB] Get:1591 http://deb.debian.org/debian stretch/main amd64 libdsdp-5.8gf amd64 5.8-9.4 [189 kB] Get:1592 http://deb.debian.org/debian stretch/main amd64 python-cvxopt amd64 1.1.4-1.5+deb9u1 [1338 kB] Get:1593 http://deb.debian.org/debian stretch/main amd64 python-dendropy all 4.2.0+dfsg-1 [7496 kB] Get:1594 http://deb.debian.org/debian stretch/main amd64 python2.7-dev amd64 2.7.13-2+deb9u3 [290 kB] Get:1595 http://deb.debian.org/debian stretch/main amd64 python-dev amd64 2.7.13-2 [1126 B] Get:1596 http://deb.debian.org/debian stretch/main amd64 python-roman all 2.0.0-2 [8130 B] Get:1597 http://deb.debian.org/debian stretch/main amd64 python-docutils all 0.13.1+dfsg-2 [373 kB] Get:1598 http://deb.debian.org/debian stretch/main amd64 python-egenix-mxtools amd64 3.2.9-1 [78.0 kB] Get:1599 http://deb.debian.org/debian stretch/main amd64 python-egenix-mxdatetime amd64 3.2.9-1 [72.2 kB] Get:1600 http://deb.debian.org/debian stretch/main amd64 python-gobject-2 amd64 2.28.6-13 [289 kB] Get:1601 http://deb.debian.org/debian stretch/main amd64 python-gtk2 amd64 2.24.0-5.1 [642 kB] Get:1602 http://deb.debian.org/debian stretch/main amd64 python-glade2 amd64 2.24.0-5.1 [43.4 kB] Get:1603 http://deb.debian.org/debian stretch/main amd64 python-gmpy amd64 1.17-3 [74.3 kB] Get:1604 http://deb.debian.org/debian stretch/main amd64 python-webencodings all 0.5-2 [10.3 kB] Get:1605 http://deb.debian.org/debian stretch/main amd64 python-html5lib all 0.999999999-1 [88.0 kB] Get:1606 http://deb.debian.org/debian stretch/main amd64 python-imagesize all 0.7.1-1 [3814 B] Get:1607 http://deb.debian.org/debian stretch/main amd64 python-pil amd64 4.0.0-4+deb9u1 [376 kB] Get:1608 http://deb.debian.org/debian stretch/main amd64 python-imaging all 4.0.0-4+deb9u1 [50.5 kB] Get:1609 http://deb.debian.org/debian stretch/main amd64 python-jdcal all 1.0-1.2~deb9u1 [7756 B] Get:1610 http://deb.debian.org/debian stretch/main amd64 python-markupsafe amd64 0.23-3 [14.4 kB] Get:1611 http://deb.debian.org/debian stretch/main amd64 python-jinja2 all 2.8-1 [111 kB] Get:1612 http://deb.debian.org/debian stretch/main amd64 python-mako all 1.0.6+ds1-2 [62.1 kB] Get:1613 http://deb.debian.org/debian stretch/main amd64 python-mysqldb amd64 1.3.7-1.1 [52.1 kB] Get:1614 http://deb.debian.org/debian stretch/main amd64 python-nose all 1.3.7-2 [132 kB] Get:1615 http://deb.debian.org/debian stretch/main amd64 python-numexpr amd64 2.6.1-4 [142 kB] Get:1616 http://deb.debian.org/debian stretch/main amd64 python-openpyxl all 2.3.0-3 [199 kB] Get:1617 http://deb.debian.org/debian stretch/main amd64 python-openssl all 16.2.0-1 [43.7 kB] Get:1618 http://deb.debian.org/debian stretch/main amd64 python-patsy all 0.4.1+git34-ga5b54c2-1 [171 kB] Get:1619 http://deb.debian.org/debian stretch/main amd64 python-pyglet all 1.1.4.dfsg-3 [736 kB] Get:1620 http://deb.debian.org/debian stretch/main amd64 python-pygraphviz amd64 1.4~rc1-1 [75.9 kB] Get:1621 http://deb.debian.org/debian stretch/main amd64 python-pysqlite2 amd64 2.7.0-1 [35.0 kB] Get:1622 http://deb.debian.org/debian stretch/main amd64 python-renderpm amd64 3.3.0-2+deb9u1 [47.3 kB] Get:1623 http://deb.debian.org/debian stretch/main amd64 python-singledispatch all 3.4.0.3-2 [9690 B] Get:1624 http://deb.debian.org/debian stretch/main amd64 python-rpy2 amd64 2.8.5-1 [155 kB] Get:1625 http://deb.debian.org/debian stretch/main amd64 python-ruffus all 2.6.3+dfsg-4 [98.3 kB] Get:1626 http://deb.debian.org/debian stretch/main amd64 python-simplejson amd64 3.10.0-1 [70.5 kB] Get:1627 http://deb.debian.org/debian stretch/main amd64 python-sklearn-lib amd64 0.18-5 [1578 kB] Get:1628 http://deb.debian.org/debian stretch/main amd64 python-sklearn all 0.18-5 [1383 kB] Get:1629 http://deb.debian.org/debian stretch/main amd64 python-alabaster all 0.7.8-1 [18.4 kB] Get:1630 http://deb.debian.org/debian stretch/main amd64 python-sphinx all 1.4.9-2 [434 kB] Get:1631 http://deb.debian.org/debian stretch/main amd64 python-sqlalchemy all 1.0.15+ds1-1 [646 kB] Get:1632 http://deb.debian.org/debian stretch/main amd64 python-sqlalchemy-ext amd64 1.0.15+ds1-1 [18.7 kB] Get:1633 http://deb.debian.org/debian stretch/main amd64 python-sympy-doc all 1.0-3 [4876 kB] Get:1634 http://deb.debian.org/debian stretch/main amd64 python-tables-lib amd64 3.3.0-5 [402 kB] Get:1635 http://deb.debian.org/debian stretch/main amd64 python-tables-data all 3.3.0-5 [50.9 kB] Get:1636 http://deb.debian.org/debian stretch/main amd64 python-tables all 3.3.0-5 [341 kB] Get:1637 http://deb.debian.org/debian stretch/main amd64 python-xlrd all 1.0.0-1 [107 kB] Get:1638 http://deb.debian.org/debian stretch/main amd64 python-xlwt all 0.7.5+debian1-1 [85.1 kB] Get:1639 http://deb.debian.org/debian stretch/main amd64 python3-bs4 all 4.5.3-1 [86.6 kB] Get:1640 http://deb.debian.org/debian stretch/main amd64 python3-chardet all 2.3.0-2 [96.0 kB] Get:1641 http://deb.debian.org/debian stretch/main amd64 python3-six all 1.10.0-3 [14.4 kB] Get:1642 http://deb.debian.org/debian stretch/main amd64 python3-webencodings all 0.5-2 [10.4 kB] Get:1643 http://deb.debian.org/debian stretch/main amd64 python3-html5lib all 0.999999999-1 [86.3 kB] Get:1644 http://deb.debian.org/debian stretch/main amd64 python3-pil amd64 4.0.0-4+deb9u1 [377 kB] Get:1645 http://deb.debian.org/debian stretch/main amd64 python3-py all 1.4.32-3 [82.9 kB] Get:1646 http://deb.debian.org/debian stretch/main amd64 python3-pytest all 3.0.6-1 [184 kB] Get:1647 http://deb.debian.org/debian stretch/main amd64 python3-renderpm amd64 3.3.0-2+deb9u1 [47.4 kB] Get:1648 http://deb.debian.org/debian stretch/main amd64 python3-yaml amd64 3.12-1 [108 kB] Get:1649 http://deb.debian.org/debian stretch/main amd64 qt-at-spi amd64 0.4.0-5 [61.6 kB] Get:1650 http://deb.debian.org/debian stretch/main amd64 qt5-gtk-platformtheme amd64 5.7.1+dfsg-3+deb9u2 [130 kB] Get:1651 http://deb.debian.org/debian stretch/main amd64 qtltools amd64 1.1+dfsg-1 [700 kB] Get:1652 http://deb.debian.org/debian stretch/main amd64 qttranslations5-l10n all 5.7.1~20161021-1 [1219 kB] Get:1653 http://deb.debian.org/debian stretch/main amd64 r-cran-boot all 1.3-18-2 [577 kB] Get:1654 http://deb.debian.org/debian stretch/main amd64 r-cran-foreign amd64 0.8.67-1 [211 kB] Get:1655 http://deb.debian.org/debian stretch/main amd64 r-cran-nlme amd64 3.1.129-1 [2042 kB] Get:1656 http://deb.debian.org/debian stretch/main amd64 r-cran-mgcv amd64 1.8-16-1 [2106 kB] Get:1657 http://deb.debian.org/debian stretch/main amd64 r-cran-class amd64 7.3-14-1 [80.9 kB] Get:1658 http://deb.debian.org/debian stretch/main amd64 r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:1659 http://deb.debian.org/debian stretch/main amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] Get:1660 http://deb.debian.org/debian stretch/main amd64 r-recommended all 3.3.3-1 [2706 B] Get:1661 http://deb.debian.org/debian stretch/main amd64 r-base all 3.3.3-1 [40.7 kB] Get:1662 http://deb.debian.org/debian stretch/main amd64 xauth amd64 1:1.0.9-1+b2 [39.6 kB] Get:1663 http://deb.debian.org/debian stretch/main amd64 r-base-dev all 3.3.3-1 [4402 B] Get:1664 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocgenerics all 0.20.0-1 [483 kB] Get:1665 http://deb.debian.org/debian stretch/main amd64 r-bioc-biobase amd64 2.34.0-1 [1989 kB] Get:1666 http://deb.debian.org/debian stretch/main amd64 r-bioc-s4vectors amd64 0.12.1-2+b1 [1114 kB] Get:1667 http://deb.debian.org/debian stretch/main amd64 r-bioc-iranges amd64 2.8.1-1+b1 [1438 kB] Get:1668 http://deb.debian.org/debian stretch/main amd64 r-cran-dbi amd64 0.5-1-1 [332 kB] Get:1669 http://deb.debian.org/debian stretch/main amd64 r-cran-memoise all 1.0.0-1 [24.4 kB] Get:1670 http://deb.debian.org/debian stretch/main amd64 r-cran-rsqlite amd64 1.1-2-1 [745 kB] Get:1671 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationdbi all 1.36.1-2 [4190 kB] Get:1672 http://deb.debian.org/debian stretch/main amd64 r-cran-xml amd64 3.98-1.5-1 [1652 kB] Get:1673 http://deb.debian.org/debian stretch/main amd64 r-cran-xtable all 1:1.8-2-1 [694 kB] Get:1674 http://deb.debian.org/debian stretch/main amd64 r-cran-rcurl amd64 1.95-4.8-2 [607 kB] Get:1675 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotate amd64 1.52.1+dfsg-1 [1908 kB] Get:1676 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocinstaller all 1.24.0-1 [59.3 kB] Get:1677 http://deb.debian.org/debian stretch/main amd64 r-cran-httpuv amd64 1.3.3-3 [227 kB] Get:1678 http://deb.debian.org/debian stretch/main amd64 r-cran-jsonlite amd64 1.2-1 [589 kB] Get:1679 http://deb.debian.org/debian stretch/main amd64 r-cran-r6 all 2.2.0-2 [128 kB] Get:1680 http://deb.debian.org/debian stretch/main amd64 r-cran-sourcetools amd64 0.1.5-1 [43.0 kB] Get:1681 http://deb.debian.org/debian stretch/main amd64 r-cran-shiny all 1.0.0+dfsg-1 [1025 kB] Get:1682 http://deb.debian.org/debian stretch/main amd64 r-bioc-interactivedisplaybase all 1.12.0-1 [33.4 kB] Get:1683 http://deb.debian.org/debian stretch/main amd64 r-cran-curl amd64 2.3-1 [353 kB] Get:1684 http://deb.debian.org/debian stretch/main amd64 r-cran-openssl amd64 0.9.6-1 [552 kB] Get:1685 http://deb.debian.org/debian stretch/main amd64 r-cran-httr all 1.2.1-1 [262 kB] Get:1686 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationhub all 2.6.4-1 [388 kB] Get:1687 http://deb.debian.org/debian stretch/main amd64 r-cran-lambda.r all 1.1.9-1 [66.7 kB] Get:1688 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.options all 1.0.0-2 [15.4 kB] Get:1689 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.logger all 1.4.3-1 [90.8 kB] Get:1690 http://deb.debian.org/debian stretch/main amd64 r-cran-snow all 1:0.4.2-1 [65.0 kB] Get:1691 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocparallel all 1.8.1-1 [633 kB] Get:1692 http://deb.debian.org/debian stretch/main amd64 r-bioc-biomart all 2.30.0-1 [183 kB] Get:1693 http://deb.debian.org/debian stretch/main amd64 r-bioc-biomformat all 1.2.0-1 [167 kB] Get:1694 http://deb.debian.org/debian stretch/main amd64 r-bioc-xvector amd64 0.14.0-1+b1 [338 kB] Get:1695 http://deb.debian.org/debian stretch/main amd64 r-bioc-biostrings amd64 2.42.1-1 [13.5 MB] Get:1696 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomeinfodb all 1.10.3-1 [14.7 MB] Get:1697 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicranges amd64 1.26.2-1+b1 [1474 kB] Get:1698 http://deb.debian.org/debian stretch/main amd64 r-bioc-summarizedexperiment all 1.4.0-2 [1354 kB] Get:1699 http://deb.debian.org/debian stretch/main amd64 r-bioc-rsamtools amd64 1.26.1-2+b1 [3241 kB] Get:1700 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicalignments amd64 1.10.0-1+b1 [1487 kB] Get:1701 http://deb.debian.org/debian stretch/main amd64 r-bioc-rtracklayer amd64 1.34.1-1 [1831 kB] Get:1702 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicfeatures all 1.26.2-1 [1054 kB] Get:1703 http://deb.debian.org/debian stretch/main amd64 r-bioc-bsgenome all 1.42.0-2 [6483 kB] Get:1704 http://deb.debian.org/debian stretch/main amd64 r-bioc-variantannotation amd64 1.20.2-1+b1 [2233 kB] Get:1705 http://deb.debian.org/debian stretch/main amd64 r-bioc-ensembldb all 1.6.2-1 [1254 kB] Get:1706 http://deb.debian.org/debian stretch/main amd64 r-bioc-biovizbase amd64 1.22.0-2 [2537 kB] Get:1707 http://deb.debian.org/debian stretch/main amd64 r-cran-fastcluster amd64 1.1.22-1 [179 kB] Get:1708 http://deb.debian.org/debian stretch/main amd64 r-cran-matrixstats amd64 0.51.0-1 [567 kB] Get:1709 http://deb.debian.org/debian stretch/main amd64 r-bioc-gviz all 1.18.1-1 [4296 kB] Get:1710 http://deb.debian.org/debian stretch/main amd64 r-bioc-cummerbund all 2.16.0-2 [2127 kB] Get:1711 http://deb.debian.org/debian stretch/main amd64 r-bioc-genefilter amd64 1.56.0-1 [1538 kB] Get:1712 http://deb.debian.org/debian stretch/main amd64 r-bioc-geneplotter all 1.52.0-2 [1492 kB] Get:1713 http://deb.debian.org/debian stretch/main amd64 r-bioc-deseq2 amd64 1.14.1-1 [1642 kB] Get:1714 http://deb.debian.org/debian stretch/main amd64 r-bioc-dnacopy amd64 1.48.0-1 [375 kB] Get:1715 http://deb.debian.org/debian stretch/main amd64 r-cran-blockmodeling amd64 0.1.8-1 [192 kB] Get:1716 http://deb.debian.org/debian stretch/main amd64 r-cran-crayon amd64 1.3.2-1 [705 kB] Get:1717 http://deb.debian.org/debian stretch/main amd64 r-cran-praise all 1.0.0-1 [17.5 kB] Get:1718 http://deb.debian.org/debian stretch/main amd64 r-cran-testthat amd64 1.0.2-2 [415 kB] Get:1719 http://deb.debian.org/debian stretch/main amd64 r-bioc-ebseq all 1.14.0-1 [1025 kB] Get:1720 http://deb.debian.org/debian stretch/main amd64 r-bioc-limma amd64 3.30.8+dfsg-1 [1055 kB] Get:1721 http://deb.debian.org/debian stretch/main amd64 r-bioc-edger amd64 3.14.0+dfsg-1 [543 kB] Get:1722 http://deb.debian.org/debian stretch/main amd64 r-bioc-hilbertvis amd64 1.32.0-1 [972 kB] Get:1723 http://deb.debian.org/debian stretch/main amd64 r-bioc-mergeomics all 1.2.0-1 [2592 kB] Get:1724 http://deb.debian.org/debian stretch/main amd64 r-cran-glmnet amd64 2.0-5-1 [1583 kB] Get:1725 http://deb.debian.org/debian stretch/main amd64 r-bioc-metagenomeseq all 1.16.0-2 [1940 kB] Get:1726 http://deb.debian.org/debian stretch/main amd64 r-bioc-multtest amd64 2.30.0-1 [637 kB] Get:1727 http://deb.debian.org/debian stretch/main amd64 r-cran-ade4 amd64 1.7-5-1 [4022 kB] Get:1728 http://deb.debian.org/debian stretch/main amd64 r-cran-ape amd64 4.0-1 [1373 kB] Get:1729 http://deb.debian.org/debian stretch/main amd64 r-cran-registry all 0.3-1 [190 kB] Get:1730 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgmaker amd64 0.22-1 [549 kB] Get:1731 http://deb.debian.org/debian stretch/main amd64 r-cran-rngtools amd64 1.2.4-2 [153 kB] Get:1732 http://deb.debian.org/debian stretch/main amd64 r-cran-gridbase all 0.4-7-2 [164 kB] Get:1733 http://deb.debian.org/debian stretch/main amd64 r-cran-doparallel amd64 1.0.10-3 [183 kB] Get:1734 http://deb.debian.org/debian stretch/main amd64 r-cran-nmf amd64 0.20.6-1 [2402 kB] Get:1735 http://deb.debian.org/debian stretch/main amd64 r-cran-irlba amd64 2.1.2-1 [241 kB] Get:1736 http://deb.debian.org/debian stretch/main amd64 r-cran-igraph amd64 1.0.1-1+deb9u1 [3118 kB] Get:1737 http://deb.debian.org/debian stretch/main amd64 r-cran-permute all 0.9-4-1 [493 kB] Get:1738 http://deb.debian.org/debian stretch/main amd64 r-cran-vegan amd64 2.4-2-1 [2605 kB] Get:1739 http://deb.debian.org/debian stretch/main amd64 r-bioc-phyloseq all 1.19.1-2 [3105 kB] Get:1740 http://deb.debian.org/debian stretch/main amd64 r-bioc-qvalue all 2.6.0-1 [2788 kB] Get:1741 http://deb.debian.org/debian stretch/main amd64 r-cran-segmented all 0.5-1.4-1 [154 kB] Get:1742 http://deb.debian.org/debian stretch/main amd64 r-cran-seqinr amd64 3.3-3-1 [3760 kB] Get:1743 http://deb.debian.org/debian stretch/main amd64 r-cran-dplyr amd64 0.5.0-1 [1340 kB] Get:1744 http://deb.debian.org/debian stretch/main amd64 r-cran-sp amd64 1:1.2-4-1 [1474 kB] Get:1745 http://deb.debian.org/debian stretch/main amd64 r-cran-learnbayes all 2.15-3 [1075 kB] Get:1746 http://deb.debian.org/debian stretch/main amd64 r-cran-deldir amd64 0.1-12-1 [138 kB] Get:1747 http://deb.debian.org/debian stretch/main amd64 r-cran-coda all 0.19-1-1 [205 kB] Get:1748 http://deb.debian.org/debian stretch/main amd64 r-cran-gmodels all 2.16.2-2 [80.0 kB] Get:1749 http://deb.debian.org/debian stretch/main amd64 r-cran-spdep amd64 0.6-9-1 [3572 kB] Get:1750 http://deb.debian.org/debian stretch/main amd64 r-cran-adegenet amd64 2.0.1-1 [2178 kB] Get:1751 http://deb.debian.org/debian stretch/main amd64 r-cran-adegraphics all 1.0-6-1 [2811 kB] Get:1752 http://deb.debian.org/debian stretch/main amd64 r-cran-prettyunits all 1.0.2-1 [26.4 kB] Get:1753 http://deb.debian.org/debian stretch/main amd64 r-cran-progress all 1.1.2-1 [41.0 kB] Get:1754 http://deb.debian.org/debian stretch/main amd64 r-cran-rncl amd64 0.8.2-1 [413 kB] Get:1755 http://deb.debian.org/debian stretch/main amd64 r-cran-xml2 amd64 1.1.0-1 [257 kB] Get:1756 http://deb.debian.org/debian stretch/main amd64 r-cran-reshape all 0.8.6-1 [124 kB] Get:1757 http://deb.debian.org/debian stretch/main amd64 r-cran-bold all 0.4.0-1 [63.3 kB] Get:1758 http://deb.debian.org/debian stretch/main amd64 r-cran-rredlist all 0.2.0-1 [54.1 kB] Get:1759 http://deb.debian.org/debian stretch/main amd64 r-cran-rentrez all 1.0.4-1 [96.4 kB] Get:1760 http://deb.debian.org/debian stretch/main amd64 r-cran-rotl all 3.0.1-1 [238 kB] Get:1761 http://deb.debian.org/debian stretch/main amd64 r-cran-solrium all 0.4.0-1 [268 kB] Get:1762 http://deb.debian.org/debian stretch/main amd64 r-cran-ritis all 0.5.4-1 [114 kB] Get:1763 http://deb.debian.org/debian stretch/main amd64 r-cran-taxize all 0.8.0-1 [668 kB] Get:1764 http://deb.debian.org/debian stretch/main amd64 r-cran-uuid amd64 0.1.2-8 [15.3 kB] Get:1765 http://deb.debian.org/debian stretch/main amd64 r-cran-tidyr amd64 0.6.1-1 [337 kB] Get:1766 http://deb.debian.org/debian stretch/main amd64 r-cran-rnexml all 2.0.7-1 [337 kB] Get:1767 http://deb.debian.org/debian stretch/main amd64 r-cran-phylobase amd64 0.8.2-1 [645 kB] Get:1768 http://deb.debian.org/debian stretch/main amd64 r-cran-adephylo amd64 1.1-10-2 [483 kB] Get:1769 http://deb.debian.org/debian stretch/main amd64 r-cran-numderiv all 2016.8-1-1 [111 kB] Get:1770 http://deb.debian.org/debian stretch/main amd64 r-cran-bbmle all 1.0.18-2 [607 kB] Get:1771 http://deb.debian.org/debian stretch/main amd64 r-cran-bio3d amd64 2.3-1-1 [2162 kB] Get:1772 http://deb.debian.org/debian stretch/main amd64 r-cran-combinat all 0.0-8-4 [29.7 kB] Get:1773 http://deb.debian.org/debian stretch/main amd64 r-cran-distory amd64 1.4.2-1 [81.4 kB] Get:1774 http://deb.debian.org/debian stretch/main amd64 r-cran-ellipse all 0.3-8-1 [48.1 kB] Get:1775 http://deb.debian.org/debian stretch/main amd64 r-cran-fastmatch amd64 1.0-4-1 [17.3 kB] Get:1776 http://deb.debian.org/debian stretch/main amd64 r-cran-spam amd64 1.4-0-1 [1829 kB] Get:1777 http://deb.debian.org/debian stretch/main amd64 r-cran-maps amd64 3.1.1-1 [2163 kB] Get:1778 http://deb.debian.org/debian stretch/main amd64 r-cran-fields amd64 8.10-1 [3602 kB] Get:1779 http://deb.debian.org/debian stretch/main amd64 r-cran-globals amd64 0.8.0-1 [52.3 kB] Get:1780 http://deb.debian.org/debian stretch/main amd64 r-cran-listenv amd64 0.6.0-1 [56.3 kB] Get:1781 http://deb.debian.org/debian stretch/main amd64 r-cran-future all 1.2.0-1 [234 kB] Get:1782 http://deb.debian.org/debian stretch/main amd64 r-cran-g.data all 2.4-1 [86.1 kB] Get:1783 http://deb.debian.org/debian stretch/main amd64 r-cran-genabel.data amd64 1.0.0-1 [2423 kB] Get:1784 http://deb.debian.org/debian stretch/main amd64 r-cran-genabel amd64 1.8-0-1+b1 [2876 kB] Get:1785 http://deb.debian.org/debian stretch/main amd64 r-cran-googlevis all 0.6.2-1 [1539 kB] Get:1786 http://deb.debian.org/debian stretch/main amd64 r-cran-htmlwidgets amd64 0.8-1 [381 kB] Get:1787 http://deb.debian.org/debian stretch/main amd64 r-cran-minpack.lm amd64 1.2-1-1 [68.8 kB] Get:1788 http://deb.debian.org/debian stretch/main amd64 r-cran-raster amd64 2.5-8-1 [2571 kB] Get:1789 http://deb.debian.org/debian stretch/main amd64 r-cran-readxl amd64 0.1.1-1+deb9u2 [198 kB] Get:1790 http://deb.debian.org/debian stretch/main amd64 r-cran-shape all 1.4.2-1 [739 kB] Get:1791 http://deb.debian.org/debian stretch/main amd64 r-cran-zoo amd64 1.7-14-1 [873 kB] Get:1792 http://deb.debian.org/debian stretch/main amd64 r-cran-luminescence amd64 0.6.4-1 [1686 kB] Get:1793 http://deb.debian.org/debian stretch/main amd64 r-cran-multicore amd64 0.2-1 [19.2 kB] Get:1794 http://deb.debian.org/debian stretch/main amd64 r-cran-optparse all 1.3.2-1 [60.0 kB] Get:1795 http://deb.debian.org/debian stretch/main amd64 r-cran-quadprog amd64 1.5-5-2 [31.2 kB] Get:1796 http://deb.debian.org/debian stretch/main amd64 r-cran-phangorn amd64 2.1.1-1 [2086 kB] Get:1797 http://deb.debian.org/debian stretch/main amd64 r-cran-r.methodss3 amd64 1.7.1-1 [59.9 kB] Get:1798 http://deb.debian.org/debian stretch/main amd64 r-cran-r.oo amd64 1.21.0-1 [763 kB] Get:1799 http://deb.debian.org/debian stretch/main amd64 r-cran-r.utils amd64 2.5.0-1 [966 kB] Get:1800 http://deb.debian.org/debian stretch/main amd64 r-cran-r.cache amd64 0.12.0-2 [77.0 kB] Get:1801 http://deb.debian.org/debian stretch/main amd64 r-cran-pscbs amd64 0.62.0-1 [3582 kB] Get:1802 http://deb.debian.org/debian stretch/main amd64 r-cran-qtl amd64 1.40-8-1 [4201 kB] Get:1803 http://deb.debian.org/debian stretch/main amd64 r-cran-randomforest amd64 4.6-12-1 [141 kB] Get:1804 http://deb.debian.org/debian stretch/main amd64 r-cran-rgl amd64 0.96.0-1 [2112 kB] Get:1805 http://deb.debian.org/debian stretch/main amd64 r-cran-rlumshiny amd64 0.1.1-1 [222 kB] Get:1806 http://deb.debian.org/debian stretch/main amd64 r-cran-scatterd3 all 0.8.1+dfsg-1 [167 kB] Get:1807 http://deb.debian.org/debian stretch/main amd64 r-cran-shinybs all 0.61-1 [88.8 kB] Get:1808 http://deb.debian.org/debian stretch/main amd64 r-cran-treescape amd64 1.10.18-6 [1955 kB] Get:1809 http://deb.debian.org/debian stretch/main amd64 r-doc-html all 3.3.3-1 [551 kB] Get:1810 http://deb.debian.org/debian stretch/main amd64 r-other-mott-happy.hbrem amd64 2.4-1 [145 kB] Get:1811 http://deb.debian.org/debian stretch/main amd64 rubygems-integration all 1.11 [4994 B] Get:1812 http://deb.debian.org/debian stretch/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:1813 http://deb.debian.org/debian stretch/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:1814 http://deb.debian.org/debian stretch/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:1815 http://deb.debian.org/debian stretch/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:1816 http://deb.debian.org/debian stretch/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:1817 http://deb.debian.org/debian stretch/main amd64 libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:1818 http://deb.debian.org/debian stretch/main amd64 ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:1819 http://deb.debian.org/debian stretch/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:1820 http://deb.debian.org/debian stretch/main amd64 rake all 10.5.0-2+deb9u1 [49.7 kB] Get:1821 http://deb.debian.org/debian stretch/main amd64 rambo-k all 1.21+dfsg-1 [1167 kB] Get:1822 http://deb.debian.org/debian stretch/main amd64 rapmap amd64 0.4.0+dfsg-2 [785 kB] Get:1823 http://deb.debian.org/debian stretch/main amd64 libcbf0 amd64 0.9.2.2-1+b1 [147 kB] Get:1824 http://deb.debian.org/debian stretch/main amd64 libcvector2 amd64 1.0.3.1-1.1+b2 [6058 B] Get:1825 http://deb.debian.org/debian stretch/main amd64 libcneartree5 amd64 3.1.1-2.1+b2 [24.0 kB] Get:1826 http://deb.debian.org/debian stretch/main amd64 libcqrlib2 amd64 1.1.2-2.1+b2 [13.9 kB] Get:1827 http://deb.debian.org/debian stretch/main amd64 rasmol amd64 2.7.5.2-2 [1688 kB] Get:1828 http://deb.debian.org/debian stretch/main amd64 raster3d amd64 3.0-3-2+b1 [168 kB] Get:1829 http://deb.debian.org/debian stretch/main amd64 rdp-readseq all 2.0.2-2 [446 kB] Get:1830 http://deb.debian.org/debian stretch/main amd64 rdp-alignment all 1.2.0-2 [77.5 kB] Get:1831 http://deb.debian.org/debian stretch/main amd64 rdp-classifier all 2.10.2-1 [220 kB] Get:1832 http://deb.debian.org/debian stretch/main amd64 rdp-classifier-doc all 2.10.2-1 [259 kB] Get:1833 http://deb.debian.org/debian stretch/main amd64 readseq amd64 1-11+b1 [56.1 kB] Get:1834 http://deb.debian.org/debian stretch/main amd64 snpomatic amd64 1.0-3+b1 [82.0 kB] Get:1835 http://deb.debian.org/debian stretch/main amd64 tabix amd64 1.3.2-2 [257 kB] Get:1836 http://deb.debian.org/debian stretch/main amd64 reapr amd64 1.0.18+dfsg-3 [226 kB] Get:1837 http://deb.debian.org/debian stretch/main amd64 relion-bin+gui amd64 1.4+dfsg-2+b2 [196 kB] Get:1838 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:1839 http://deb.debian.org/debian stretch/main amd64 repeatmasker-recon amd64 1.08-3+b1 [101 kB] Get:1840 http://deb.debian.org/debian stretch/main amd64 rhino all 1.7.7.1-1 [26.6 kB] Get:1841 http://deb.debian.org/debian stretch/main amd64 rna-star amd64 2.5.2b+dfsg-1 [366 kB] Get:1842 http://deb.debian.org/debian stretch/main amd64 rnahybrid amd64 2.1.2-1+b1 [159 kB] Get:1843 http://deb.debian.org/debian stretch/main amd64 roary all 3.8.0+dfsg-1 [170 kB] Get:1844 http://deb.debian.org/debian stretch/main amd64 rsem amd64 1.2.31+dfsg-1 [765 kB] Get:1845 http://deb.debian.org/debian stretch/main amd64 rtax all 0.984-5 [26.1 kB] Get:1846 http://deb.debian.org/debian stretch/main amd64 saint amd64 2.5.0+dfsg-2+b1 [88.5 kB] Get:1847 http://deb.debian.org/debian stretch/main amd64 libjs-modernizr all 2.6.2+ds1-1 [71.3 kB] Get:1848 http://deb.debian.org/debian stretch/main amd64 sphinx-rtd-theme-common all 0.1.9-1 [210 kB] Get:1849 http://deb.debian.org/debian stretch/main amd64 salmon amd64 0.7.2+ds1-2+b1 [1622 kB] Get:1850 http://deb.debian.org/debian stretch/main amd64 scrm amd64 1.7.2-1+b1 [62.3 kB] Get:1851 http://deb.debian.org/debian stretch/main amd64 scythe amd64 0.994-4 [18.2 kB] Get:1852 http://deb.debian.org/debian stretch/main amd64 seaview amd64 1:4.6.1.2-2 [339 kB] Get:1853 http://deb.debian.org/debian stretch/main amd64 seer amd64 1.1.2-3 [398 kB] Get:1854 http://deb.debian.org/debian stretch/main amd64 seqprep amd64 1.3.2-1 [27.8 kB] Get:1855 http://deb.debian.org/debian stretch/main amd64 sga amd64 0.10.15-2 [1008 kB] Get:1856 http://deb.debian.org/debian stretch/main amd64 sibsim4 amd64 0.20-2+b1 [30.3 kB] Get:1857 http://deb.debian.org/debian stretch/main amd64 sickle amd64 1.33-1+b1 [18.2 kB] Get:1858 http://deb.debian.org/debian stretch/main amd64 sigma-align amd64 1.1.3-4+b1 [24.3 kB] Get:1859 http://deb.debian.org/debian stretch/main amd64 sim4 amd64 0.0.20121010-4 [396 kB] Get:1860 http://deb.debian.org/debian stretch/main amd64 smithwaterman amd64 0.0+20160702-1+b1 [9036 B] Get:1861 http://deb.debian.org/debian stretch/main amd64 smrtanalysis all 0~20161126 [2518 B] Get:1862 http://deb.debian.org/debian stretch/main amd64 snap-aligner amd64 1.0~beta.18+dfsg-1 [1617 kB] Get:1863 http://deb.debian.org/debian stretch/main amd64 sniffles amd64 1.0.2+ds-1 [146 kB] Get:1864 http://deb.debian.org/debian stretch/main amd64 snp-sites amd64 2.3.2-1 [10.3 kB] Get:1865 http://deb.debian.org/debian stretch/main amd64 soapdenovo amd64 1.05-3 [343 kB] Get:1866 http://deb.debian.org/debian stretch/main amd64 soapdenovo2 amd64 240+dfsg1-2 [450 kB] Get:1867 http://deb.debian.org/debian stretch/main amd64 sortmerna amd64 2.1-1+b1 [537 kB] Get:1868 http://deb.debian.org/debian stretch/main amd64 spaced amd64 1.0.2+dfsg-1+b1 [49.3 kB] Get:1869 http://deb.debian.org/debian stretch/main amd64 sprai amd64 0.9.9.22+dfsg-1 [1513 kB] Get:1870 http://deb.debian.org/debian stretch/main amd64 spread-phy all 1.0.7+dfsg-1 [3313 kB] Get:1871 http://deb.debian.org/debian stretch/main amd64 squizz amd64 0.99c+dfsg-1 [31.2 kB] Get:1872 http://deb.debian.org/debian stretch/main amd64 sra-toolkit amd64 2.8.1-2+dfsg-2 [1487 kB] Get:1873 http://deb.debian.org/debian stretch/main amd64 srst2 amd64 0.2.0-4 [60.5 kB] Get:1874 http://deb.debian.org/debian stretch/main amd64 ssake all 3.8.4-1 [30.1 kB] Get:1875 http://deb.debian.org/debian stretch/main amd64 ssl-cert all 1.0.39 [20.8 kB] Get:1876 http://deb.debian.org/debian stretch/main amd64 sspace all 2.1.1+dfsg-2 [1339 kB] Get:1877 http://deb.debian.org/debian stretch/main amd64 ssw-align amd64 1.1-1+b1 [12.8 kB] Get:1878 http://deb.debian.org/debian stretch/main amd64 stacks amd64 1.44-2+b1 [1031 kB] Get:1879 http://deb.debian.org/debian stretch/main amd64 tk8.6 amd64 8.6.6-1+b1 [71.8 kB] Get:1880 http://deb.debian.org/debian stretch/main amd64 tcl8.6 amd64 8.6.6+dfsg-1+b1 [123 kB] Get:1881 http://deb.debian.org/debian stretch/main amd64 tcl amd64 8.6.0+9 [5468 B] Get:1882 http://deb.debian.org/debian stretch/main amd64 tk amd64 8.6.0+9 [5506 B] Get:1883 http://deb.debian.org/debian stretch/main amd64 staden-common all 2.0.0+b11-2 [1973 kB] Get:1884 http://deb.debian.org/debian stretch/main amd64 staden-io-lib-utils amd64 1.14.8-2 [250 kB] Get:1885 http://deb.debian.org/debian stretch/main amd64 tklib all 0.6-3 [1022 kB] Get:1886 http://deb.debian.org/debian stretch/main amd64 staden amd64 2.0.0+b11-2+b1 [1614 kB] Get:1887 http://deb.debian.org/debian stretch/main amd64 subread amd64 1.5.1+dfsg-4 [570 kB] Get:1888 http://deb.debian.org/debian stretch/main amd64 suitename amd64 0.3.070628-1+b1 [21.3 kB] Get:1889 http://deb.debian.org/debian stretch/main amd64 sumaclust amd64 1.0.20-1+b1 [114 kB] Get:1890 http://deb.debian.org/debian stretch/main amd64 sumatra amd64 1.0.20-1+b1 [98.8 kB] Get:1891 http://deb.debian.org/debian stretch/main amd64 sumtrees all 4.2.0+dfsg-1 [27.3 kB] Get:1892 http://deb.debian.org/debian stretch/main amd64 surankco all 0.0.r5+dfsg-1 [76.7 kB] Get:1893 http://deb.debian.org/debian stretch/main amd64 swarm amd64 2.1.12+dfsg-1 [72.1 kB] Get:1894 http://deb.debian.org/debian stretch/main amd64 t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:1895 http://deb.debian.org/debian stretch/main amd64 tantan amd64 13-4 [36.1 kB] Get:1896 http://deb.debian.org/debian stretch/main amd64 tcllib all 1.18-dfsg-3 [4149 kB] Get:1897 http://deb.debian.org/debian stretch/main amd64 tcpd amd64 7.6.q-26 [23.3 kB] Get:1898 http://deb.debian.org/debian stretch/main amd64 tex-gyre all 20160520-1 [5000 kB] Get:1899 http://deb.debian.org/debian stretch/main amd64 texlive-extra-utils all 2016.20170123-5 [19.8 MB] Get:1900 http://deb.debian.org/debian stretch/main amd64 texlive-font-utils all 2016.20170123-5 [1736 kB] Get:1901 http://deb.debian.org/debian stretch/main amd64 fonts-stix all 1.1.1-4 [590 kB] Get:1902 http://deb.debian.org/debian stretch/main amd64 ttf-adf-accanthis all 0.20090423-2 [401 kB] Get:1903 http://deb.debian.org/debian stretch/main amd64 ttf-adf-gillius all 0.20090423-2 [400 kB] Get:1904 http://deb.debian.org/debian stretch/main amd64 ttf-adf-universalis all 0.20090423-2 [221 kB] Get:1905 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-extra all 2016.20170123-5 [256 MB] Get:1906 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-extra-doc all 2016.20170123-5 [82.5 MB] Get:1907 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-recommended all 2016.20170123-5 [5307 kB] Get:1908 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-recommended-doc all 2016.20170123-5 [2660 kB] Get:1909 http://deb.debian.org/debian stretch/main amd64 texlive-generic-extra all 2016.20170123-5 [14.9 MB] Get:1910 http://deb.debian.org/debian stretch/main amd64 texlive-latex-base-doc all 2016.20170123-5 [45.6 MB] Get:1911 http://deb.debian.org/debian stretch/main amd64 texlive-latex-extra all 2016.20170123-5 [10.6 MB] Get:1912 http://deb.debian.org/debian stretch/main amd64 texlive-latex-extra-doc all 2016.20170123-5 [364 MB] Get:1913 http://deb.debian.org/debian stretch/main amd64 texlive-latex-recommended-doc all 2016.20170123-5 [40.6 MB] Get:1914 http://deb.debian.org/debian stretch/main amd64 texlive-pictures-doc all 2016.20170123-5 [105 MB] Get:1915 http://deb.debian.org/debian stretch/main amd64 texlive-pstricks-doc all 2016.20170123-5 [238 MB] Get:1916 http://deb.debian.org/debian stretch/main amd64 texlive-science all 2016.20170123-5 [3043 kB] Get:1917 http://deb.debian.org/debian stretch/main amd64 texlive-science-doc all 2016.20170123-5 [46.3 MB] Get:1918 http://deb.debian.org/debian stretch/main amd64 theseus amd64 3.3.0-5+b1 [432 kB] Get:1919 http://deb.debian.org/debian stretch/main amd64 tigr-glimmer amd64 3.02b-1 [283 kB] Get:1920 http://deb.debian.org/debian stretch/main amd64 tipa all 2:1.3-20 [2972 kB] Get:1921 http://deb.debian.org/debian stretch/main amd64 tm-align amd64 20160521+dfsg-2 [868 kB] Get:1922 http://deb.debian.org/debian stretch/main amd64 toppred amd64 1.10-4 [61.9 kB] Get:1923 http://deb.debian.org/debian stretch/main amd64 transdecoder all 3.0.1+dfsg-1 [62.8 kB] Get:1924 http://deb.debian.org/debian stretch/main amd64 transrate-tools amd64 1.0.0-1+b1 [16.6 kB] Get:1925 http://deb.debian.org/debian stretch/main amd64 transtermhp amd64 2.09-3+b1 [131 kB] Get:1926 http://deb.debian.org/debian stretch/main amd64 tree-puzzle amd64 5.2-8+b3 [135 kB] Get:1927 http://deb.debian.org/debian stretch/main amd64 tree-puzzle-doc all 5.2-8 [401 kB] Get:1928 http://deb.debian.org/debian stretch/main amd64 treeview all 1.1.6.4+dfsg1-2 [2720 kB] Get:1929 http://deb.debian.org/debian stretch/main amd64 treeviewx amd64 0.5.1+20100823-4 [182 kB] Get:1930 http://deb.debian.org/debian stretch/main amd64 trimmomatic all 0.36+dfsg-1 [116 kB] Get:1931 http://deb.debian.org/debian stretch/main amd64 trinityrnaseq amd64 2.2.0+dfsg-2+b1 [1748 kB] Get:1932 http://deb.debian.org/debian stretch/main amd64 trinityrnaseq-examples all 2.2.0+dfsg-2 [154 MB] Get:1933 http://deb.debian.org/debian stretch/main amd64 uc-echo amd64 1.12-9+b1 [76.7 kB] Get:1934 http://deb.debian.org/debian stretch/main amd64 varna all 3-93+ds-1 [761 kB] Get:1935 http://deb.debian.org/debian stretch/main amd64 velvet amd64 1.2.10+dfsg1-3+b1 [688 kB] Get:1936 http://deb.debian.org/debian stretch/main amd64 velvetoptimiser all 2.2.5-5 [25.1 kB] Get:1937 http://deb.debian.org/debian stretch/main amd64 vsearch amd64 2.3.4-1 [257 kB] Get:1938 http://deb.debian.org/debian stretch/main amd64 wise-data all 2.4.1-19 [108 kB] Get:1939 http://deb.debian.org/debian stretch/main amd64 wise amd64 2.4.1-19 [993 kB] Get:1940 http://deb.debian.org/debian stretch/main amd64 x11-xserver-utils amd64 7.7+7+b1 [167 kB] Get:1941 http://deb.debian.org/debian stretch/main amd64 xbitmaps all 1.1.1-2 [32.1 kB] Get:1942 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:1943 http://deb.debian.org/debian stretch/main amd64 xfonts-encodings all 1:1.0.4-2 [574 kB] Get:1944 http://deb.debian.org/debian stretch/main amd64 xfonts-utils amd64 1:7.7+4 [77.2 kB] Get:1945 http://deb.debian.org/debian stretch/main amd64 xfonts-100dpi all 1:1.0.4+nmu1 [3822 kB] Get:1946 http://deb.debian.org/debian stretch/main amd64 xsltproc amd64 1.1.29-2.1+deb9u2 [120 kB] Get:1947 http://deb.debian.org/debian stretch/main amd64 xterm amd64 327-2 [663 kB] Get:1948 http://deb.debian.org/debian stretch/main amd64 zalign amd64 0.9.1-2+b3 [48.6 kB] Get:1949 http://deb.debian.org/debian stretch/main amd64 acedb-other amd64 4.9.39+dfsg.02-1 [16.8 kB] Get:1950 http://deb.debian.org/debian stretch/main amd64 acedb-other-belvu amd64 4.9.39+dfsg.02-1 [188 kB] Get:1951 http://deb.debian.org/debian stretch/main amd64 acedb-other-dotter amd64 4.9.39+dfsg.02-1 [208 kB] Get:1952 http://deb.debian.org/debian stretch/main amd64 ampliconnoise amd64 1.29-6 [476 kB] Get:1953 http://deb.debian.org/debian stretch/main amd64 astro-tasks all 1.0 [10.8 kB] Get:1954 http://deb.debian.org/debian stretch/main amd64 autodock-vina amd64 1.1.2-3+b6 [175 kB] Get:1955 http://deb.debian.org/debian stretch/main amd64 python-gdata all 2.0.18+dfsg1-2 [358 kB] Get:1956 http://deb.debian.org/debian stretch/main amd64 bauble all 0.9.7-2.1 [577 kB] Get:1957 http://deb.debian.org/debian stretch/main amd64 concavity amd64 0.1+dfsg.1-1 [295 kB] Get:1958 http://deb.debian.org/debian stretch/main amd64 conservation-code all 20110309.0-5 [23.6 kB] Get:1959 http://deb.debian.org/debian stretch/main amd64 critterding amd64 1.0-beta12.1-1.3+b1 [730 kB] Get:1960 http://deb.debian.org/debian stretch/main amd64 datamash amd64 1.0.7-1 [744 kB] Get:1961 http://deb.debian.org/debian stretch/main amd64 debichem-tasks all 0.0.6 [3750 B] Get:1962 http://deb.debian.org/debian stretch/main amd64 disulfinder-data all 1.2.11-6 [1129 kB] Get:1963 http://deb.debian.org/debian stretch/main amd64 disulfinder amd64 1.2.11-6 [261 kB] Get:1964 http://deb.debian.org/debian stretch/main amd64 edtsurf amd64 0.2009-4+b1 [59.1 kB] Get:1965 http://deb.debian.org/debian stretch/main amd64 libffindex0 amd64 0.9.9.7-3 [16.7 kB] Get:1966 http://deb.debian.org/debian stretch/main amd64 ffindex amd64 0.9.9.7-3 [29.6 kB] Get:1967 http://deb.debian.org/debian stretch/main amd64 freecontact amd64 1.0.21-5 [335 kB] Get:1968 http://deb.debian.org/debian stretch/main amd64 gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:1969 http://deb.debian.org/debian stretch/main amd64 gromacs-data all 2016.1-2 [22.1 MB] Get:1970 http://deb.debian.org/debian stretch/main amd64 libgromacs2 amd64 2016.1-2 [11.3 MB] Get:1971 http://deb.debian.org/debian stretch/main amd64 gromacs amd64 2016.1-2 [234 kB] Get:1972 http://deb.debian.org/debian stretch/main amd64 hhsuite-data all 3.0~beta2+dfsg-3 [2164 kB] Get:1973 http://deb.debian.org/debian stretch/main amd64 hhsuite amd64 3.0~beta2+dfsg-3 [1005 kB] Get:1974 http://deb.debian.org/debian stretch/main amd64 libconfig-inifiles-perl all 2.94-1 [53.4 kB] Get:1975 http://deb.debian.org/debian stretch/main amd64 libev-perl amd64 4.22-1+b1 [240 kB] Get:1976 http://deb.debian.org/debian stretch/main amd64 librg-reprof-bundle-perl all 1.0.1-4 [7479 kB] Get:1977 http://deb.debian.org/debian stretch/main amd64 profphd-utils amd64 1.0.10-3+b1 [264 kB] Get:1978 http://deb.debian.org/debian stretch/main amd64 librg-utils-perl all 1.0.43-4 [111 kB] Get:1979 http://deb.debian.org/debian stretch/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:1980 http://deb.debian.org/debian stretch/main amd64 libtxc-dxtn-s2tc amd64 1.0+git20151227-2 [48.4 kB] Get:1981 http://deb.debian.org/debian stretch/main amd64 lynx amd64 2.8.9dev11-1 [632 kB] Get:1982 http://deb.debian.org/debian stretch/main amd64 med-tasks all 3.0.1 [14.3 kB] Get:1983 http://deb.debian.org/debian stretch/main amd64 med-config all 3.0.1 [17.1 kB] Get:1984 http://deb.debian.org/debian stretch/main amd64 med-bio all 3.0.1 [18.7 kB] Get:1985 http://deb.debian.org/debian stretch/main amd64 ncbi-seg amd64 0.0.20000620-3+b1 [78.7 kB] Get:1986 http://deb.debian.org/debian stretch/main amd64 neobio all 0.0.20030929-2 [291 kB] Get:1987 http://deb.debian.org/debian stretch/main amd64 profnet-norsnet amd64 1.0.22-4 [43.0 kB] Get:1988 http://deb.debian.org/debian stretch/main amd64 norsnet all 1.0.17-2 [44.4 kB] Get:1989 http://deb.debian.org/debian stretch/main amd64 norsp all 1.0.6-2 [283 kB] Get:1990 http://deb.debian.org/debian stretch/main amd64 populations amd64 1.2.33+svn0120106-2.1+b1 [186 kB] Get:1991 http://deb.debian.org/debian stretch/main amd64 pp-popularity-contest amd64 1.0.6-2+b4 [33.3 kB] Get:1992 http://deb.debian.org/debian stretch/main amd64 predictnls all 1.0.20-3 [1404 kB] Get:1993 http://deb.debian.org/debian stretch/main amd64 profnet-bval amd64 1.0.22-4 [43.8 kB] Get:1994 http://deb.debian.org/debian stretch/main amd64 profbval all 1.0.22-4 [60.5 kB] Get:1995 http://deb.debian.org/debian stretch/main amd64 profnet-isis amd64 1.0.22-4 [105 kB] Get:1996 http://deb.debian.org/debian stretch/main amd64 profisis all 1.0.11-3 [63.2 kB] Get:1997 http://deb.debian.org/debian stretch/main amd64 profnet-chop amd64 1.0.22-4 [105 kB] Get:1998 http://deb.debian.org/debian stretch/main amd64 profnet-con amd64 1.0.22-4 [105 kB] Get:1999 http://deb.debian.org/debian stretch/main amd64 profnet-md amd64 1.0.22-4 [43.0 kB] Get:2000 http://deb.debian.org/debian stretch/main amd64 profnet-prof amd64 1.0.22-4 [105 kB] Get:2001 http://deb.debian.org/debian stretch/main amd64 profnet-snapfun amd64 1.0.22-4 [105 kB] Get:2002 http://deb.debian.org/debian stretch/main amd64 profphd-net amd64 1.0.22-4 [141 kB] Get:2003 http://deb.debian.org/debian stretch/main amd64 proftmb amd64 1.1.12-6+b1 [396 kB] Get:2004 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] Get:2005 http://deb.debian.org/debian stretch/main amd64 pvm amd64 3.4.6-1+b2 [167 kB] Get:2006 http://deb.debian.org/debian stretch/main amd64 pynast all 1.2.2-2 [83.5 kB] Get:2007 http://deb.debian.org/debian stretch/main amd64 python-cogent amd64 1.9-9 [1063 kB] Get:2008 http://deb.debian.org/debian stretch/main amd64 python-mpi4py amd64 2.0.0-2.1+deb9u1 [425 kB] Get:2009 http://deb.debian.org/debian stretch/main amd64 python-statsmodels-lib amd64 0.8.0~rc1+git59-gef47cd9-5 [291 kB] Get:2010 http://deb.debian.org/debian stretch/main amd64 python-statsmodels all 0.8.0~rc1+git59-gef47cd9-5 [3312 kB] Get:2011 http://deb.debian.org/debian stretch/main amd64 python3-scipy amd64 0.18.1-2 [8534 kB] Get:2012 http://deb.debian.org/debian stretch/main amd64 r-base-html all 3.3.3-1 [85.9 kB] Get:2013 http://deb.debian.org/debian stretch/main amd64 rate4site amd64 3.0.0-4+b1 [648 kB] Get:2014 http://deb.debian.org/debian stretch/main amd64 ray amd64 2.3.1-4+b1 [594 kB] Get:2015 http://deb.debian.org/debian stretch/main amd64 reprof all 1.0.1-4 [17.8 kB] Get:2016 http://deb.debian.org/debian stretch/main amd64 science-tasks all 1.7 [17.4 kB] Get:2017 http://deb.debian.org/debian stretch/main amd64 science-config all 1.7 [18.7 kB] Get:2018 http://deb.debian.org/debian stretch/main amd64 science-biology all 1.7 [16.4 kB] Get:2019 http://deb.debian.org/debian stretch/main amd64 snap amd64 2013-11-29-6 [373 kB] Get:2020 http://deb.debian.org/debian stretch/main amd64 vcftools amd64 0.1.14+dfsg-4+deb9u1 [458 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3556 MB in 7min 36s (7789 kB/s) Selecting previously unselected package lsb-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) ... Selecting previously unselected package cron. Preparing to unpack .../01-cron_3.0pl1-128+deb9u1_amd64.deb ... Unpacking cron (3.0pl1-128+deb9u1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../02-liblocale-gettext-perl_1.07-3+b1_amd64.deb ... 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Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Unpacking parallel (20161222-1) ... Selecting previously unselected package last-align. Preparing to unpack .../0876-last-align_830-1_amd64.deb ... Unpacking last-align (830-1) ... Selecting previously unselected package lefse. Preparing to unpack .../0877-lefse_1.0+20160802-1_all.deb ... Unpacking lefse (1.0+20160802-1) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../0878-liberror-perl_0.17024-1_all.deb ... Unpacking liberror-perl (0.17024-1) ... Selecting previously unselected package libipc-sharelite-perl. Preparing to unpack .../0879-libipc-sharelite-perl_0.17-4_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-4) ... Selecting previously unselected package libcache-cache-perl. Preparing to unpack .../0880-libcache-cache-perl_1.08-2_all.deb ... 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Adding 'diversion of /usr/bin/efetch to /usr/bin/efetch.acedb by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/efetch.1.gz to /usr/share/man/man1/efetch.acedb.1.gz by ncbi-entrez-direct' Adding 'diversion of /usr/bin/einfo to /usr/bin/einfo.epub by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/einfo.1.gz to /usr/share/man/man1/einfo.epub.1.gz by ncbi-entrez-direct' Unpacking ncbi-entrez-direct (6.10.20170123+ds-1) ... Selecting previously unselected package ncbi-epcr. Preparing to unpack .../1274-ncbi-epcr_2.3.12-1-4_amd64.deb ... Unpacking ncbi-epcr (2.3.12-1-4) ... Selecting previously unselected package ncbi-tools-bin. Preparing to unpack .../1275-ncbi-tools-bin_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking ncbi-tools-bin (6.1.20170106+dfsg1-0+deb9u1) ... Selecting previously unselected package ncbi-tools-x11. Preparing to unpack .../1276-ncbi-tools-x11_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... 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Selecting previously unselected package python3-yaml. Preparing to unpack .../1439-python3-yaml_3.12-1_amd64.deb ... Unpacking python3-yaml (3.12-1) ... Selecting previously unselected package qt-at-spi:amd64. Preparing to unpack .../1440-qt-at-spi_0.4.0-5_amd64.deb ... Unpacking qt-at-spi:amd64 (0.4.0-5) ... Selecting previously unselected package qt5-gtk-platformtheme:amd64. Preparing to unpack .../1441-qt5-gtk-platformtheme_5.7.1+dfsg-3+deb9u2_amd64.deb ... Unpacking qt5-gtk-platformtheme:amd64 (5.7.1+dfsg-3+deb9u2) ... Selecting previously unselected package qtltools. Preparing to unpack .../1442-qtltools_1.1+dfsg-1_amd64.deb ... Unpacking qtltools (1.1+dfsg-1) ... Selecting previously unselected package qttranslations5-l10n. Preparing to unpack .../1443-qttranslations5-l10n_5.7.1~20161021-1_all.deb ... Unpacking qttranslations5-l10n (5.7.1~20161021-1) ... Selecting previously unselected package r-cran-boot. Preparing to unpack .../1444-r-cran-boot_1.3-18-2_all.deb ... 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Setting up fonts-linuxlibertine (5.3.0-2) ... Setting up poppler-data (0.4.7-8) ... Setting up sumaclust (1.0.20-1+b1) ... Setting up libbamtools2.4.0 (2.4.1+dfsg-1) ... Setting up libboost-program-options1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up vsearch (2.3.4-1) ... Setting up libcilkrts5:amd64 (6.3.0-18+deb9u1) ... Setting up libdjvulibre-text (3.5.27.1-7) ... Setting up libssw0:amd64 (1.1-1+b1) ... Setting up suitename (0.3.070628-1+b1) ... Setting up libgtextutils0v5:amd64 (0.7-4) ... Setting up rate4site (3.0.0-4+b1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up sortmerna (2.1-1+b1) ... Setting up libblas-common (3.7.0-2) ... Setting up libjargs-java (1.0.0-4) ... Setting up libpng-tools (1.6.28-1+deb9u1) ... Setting up libsprng2 (2.0a-10) ... Setting up sibsim4 (0.20-2+b1) ... Setting up libpal-java (1.5.1+dfsg-2) ... Setting up spaced (1.0.2+dfsg-1+b1) ... Setting up libsnp-sites1 (2.3.2-1) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 19 21:21:15 UTC 2023. Universal Time is now: Wed Apr 19 21:21:15 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dazzdb (1.0+20161112-2) ... Setting up phipack (0.0.20160614-2) ... Setting up libtbb2:amd64 (4.3~20150611-2) ... Setting up libxml-commons-external-java (1.4.01-2) ... Setting up libelf1:amd64 (0.168-1) ... Setting up libubsan0:amd64 (6.3.0-18+deb9u1) ... Setting up dnaclust (3-4+b2) ... Setting up libmatthew-debug-java (0.8-1) ... Setting up libtsan0:amd64 (6.3.0-18+deb9u1) ... Setting up datamash (1.0.7-1) ... Setting up qtcore4-l10n (4:4.8.7+dfsg-11) ... Setting up melting (4.3.1+dfsg-2+b1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up groff-base (1.22.3-9) ... Setting up daligner (1.0+20161119-1) ... Setting up mysql-common (5.8+1.0.2) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up edtsurf (0.2009-4+b1) ... Setting up pbsim (1.0.3-2) ... Setting up libasound2-data (1.1.3-5) ... Setting up libnetpbm10 (2:10.0-15.3+b2) ... Setting up probabel (0.4.5-3+b1) ... Setting up libxshmfence1:amd64 (1.2-1+b2) ... Setting up clearcut (1.0.9-1+b1) ... Setting up libcap2:amd64 (1:2.25-1) ... Setting up libmotif-common (2.3.4-13) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up infernal (1.1.2-1) ... Setting up librdp-taxonomy-tree-java (1.2.0-1) ... Setting up libnucleotidelikelihoodcore0 (1.8.4+dfsg.1-1) ... Setting up profnet-prof (1.0.22-4) ... Setting up probcons (1.12-11) ... Setting up libfuse2:amd64 (2.9.7-1+deb9u2) ... Setting up xkb-data (2.19-1+deb9u1) ... Setting up qtchooser (63-g13a3d08-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up sim4db (0~20150903+r2013-3) ... Setting up velvet (1.2.10+dfsg1-3+b1) ... Setting up libproxy1v5:amd64 (0.4.14-2) ... Setting up unzip (6.0-21+deb9u2) ... Setting up linux-libc-dev:amd64 (4.9.228-1) ... Setting up libgkarrays1 (2.1.0+dfsg-1) ... Setting up dialign (2.2.1-8) ... Setting up java-common (0.58+deb9u1) ... Setting up fonts-oflb-asana-math (000.907-6) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up hhsuite-data (3.0~beta2+dfsg-3) ... Setting up libjebl2-java (0.1+20140614-1) ... Setting up libcommons-net-java (3.5-1) ... Setting up libtinfo-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up parafly (0.0.2013.01.21-3+b1) ... Setting up libzstd1 (1.1.2-1) ... Setting up lua-filesystem:amd64 (1.6.3-1) ... Setting up libgc1c2:amd64 (1:7.4.2-8) ... Setting up libcapnp-0.5.3 (0.5.3-2) ... Setting up fonts-lobster (2.0-2) ... Setting up libjs-sphinxdoc (1.4.9-2) ... Setting up fonts-gfs-solomos (1.1-5) ... Setting up libsuitesparseconfig4:amd64 (1:4.5.4-1) ... Setting up menu (2.1.47+b1) ... Setting up concavity (0.1+dfsg.1-1) ... Setting up apache2-data (2.4.25-3+deb9u9) ... Setting up ncbi-epcr (2.3.12-1-4) ... Setting up libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Setting up libcommons-collections4-java (4.1-1) ... Setting up tree-puzzle (5.2-8+b3) ... Setting up dascrubber (0~20160601-2) ... Setting up python-tables-data (3.3.0-5) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up gettext-base (0.19.8.1-2+deb9u1) ... Setting up fonts-freefont-otf (20120503-6) ... Setting up libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/s2tc/libtxc_dxtn.so to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up libgif7:amd64 (5.1.4-0.4) ... Setting up libffindex0 (0.9.9.7-3) ... Setting up snap (2013-11-29-6) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up dawg (1.2-1+b1) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Setting up libglapi-mesa:amd64 (13.0.6-1+b2) ... Setting up fonts-texgyre (20160520-1) ... Setting up plast (2.3.1+dfsg-4) ... Setting up massxpert-data (3.6.1-1) ... Setting up sniffles (1.0.2+ds-1) ... Setting up libjs-mootools (1.4.5~debian1-2.1) ... Setting up python-biopython-doc (1.68+dfsg-3) ... Setting up lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Setting up libgsl2:amd64 (2.3+dfsg-1) ... Setting up kmc (2.3+dfsg-5) ... Setting up m4 (1.4.18-1) ... Setting up sgml-base (1.29) ... Setting up libcommons-math3-java (3.6.1-2) ... Setting up filo (1.1.0-3+b1) ... Setting up libmaloc1 (0.2-3.1) ... Setting up fonts-crosextra-carlito (20130920-1) ... Setting up libtre5:amd64 (0.8.0-6) ... Setting up libfftw3-double3:amd64 (3.3.5-3) ... Setting up libcdparanoia0:amd64 (3.10.2+debian-11) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libcqrlib2:amd64 (1.1.2-2.1+b2) ... Setting up fonts-liberation (1:1.07.4-2) ... Setting up libjs-es5-shim (4.5.9-1) ... Setting up gnustep-common (2.6.8-2.1) ... Setting up python-backports-shutil-get-terminal-size (1.0.0-3) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Setting up laptop-detect (0.13.8) ... Setting up libnspr4:amd64 (2:4.12-6) ... Setting up ucf (3.0036) ... Setting up libjbzip2-java (0.9.1-3) ... Setting up xfonts-encodings (1:1.0.4-2) ... Setting up fonts-ebgaramond-extra (0.016-1) ... Setting up mira-rfam-12s-rrna (4.9.6-2) ... Will install rfam_rrna-21-12 with kmer size 21 as MIRA default rRNA filter in /usr/bin/../share/mira/mhs Installing. This can take a minute or two, please be patient. Done. MIRA can now use the functionality to filter for rRNA during assemblies. MIRABAIT can now use the '-j rrna' option. Setting up fonts-font-awesome (4.7.0~dfsg-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libutempter0:amd64 (1.1.6-3) ... Setting up zip (3.0-11+b1) ... Setting up tm-align (20160521+dfsg-2) ... Setting up fonts-junicode (0.7.8-2) ... Setting up libjxr0:amd64 (1.1-6+b1) ... Setting up dssp (2.2.1-3+b2) ... Setting up libngs-sdk1 (1.3.0-2) ... Setting up libvcflib1 (1.0.0~rc1+dfsg1-3) ... Setting up libopus0:amd64 (1.2~alpha2-1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up fonts-noto-mono (20161116-1) ... Setting up libjs-d3 (3.5.17-2) ... Setting up gnupg-l10n (2.1.18-8~deb9u4) ... Setting up libwxbase3.0-0v5:amd64 (3.0.2+dfsg-4) ... Setting up libasound2:amd64 (1.1.3-5) ... Setting up libtamuanova-0.2 (0.2-4) ... Setting up libibatis-java (2.3.4.726-6) ... Setting up libdrm2:amd64 (2.4.74-1) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libncl1 (2.1.18+dfsg-2+b1) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up fastml (3.1-3) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up adapterremoval (2.2.0-1) ... Setting up rsync (3.1.2-1+deb9u2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up liblsan0:amd64 (6.3.0-18+deb9u1) ... Setting up procps (2:3.3.12-3+deb9u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up gwama (2.2.2+dfsg-1) ... Setting up fonts-lato (2.0-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Setting up fsm-lite (1.0-2) ... Setting up sim4 (0.0.20121010-4) ... Setting up soapdenovo2 (240+dfsg1-2) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up raxml (8.2.9+dfsg-1+b1) ... Setting up libjsr305-java (0.1~+svn49-10) ... Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libprotobuf10:amd64 (3.0.0-9) ... Setting up cdbfasta (0.99-20100722-3) ... Setting up lambda-align (1.0.1-2) ... Setting up amap-align (2.2-6) ... Setting up profnet-isis (1.0.22-4) ... Setting up libjs-json (0~20160510-1) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libball1.4-data (1.4.3~beta1-3) ... Setting up libenv-path-perl (0.19-1) ... Setting up libfile-chdir-perl (0.1008-1) ... Setting up libsys-hostname-long-perl (1.5-1) ... Setting up acedb-other (4.9.39+dfsg.02-1) ... Setting up libjline-java (1.0-2) ... Setting up fonts-gfs-complutum (1.1-6) ... Setting up libfile-fcntllock-perl (0.22-3+b2) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up plink (1.07-7) ... Setting up scythe (0.994-4) ... Setting up fonts-cabin (1.5-2) ... Setting up paraclu (9-1+b2) ... Setting up libilmbase12:amd64 (2.2.0-12) ... Setting up libatk1.0-data (2.22.0-1) ... Setting up libmath-round-perl (0.07-1) ... Setting up libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Setting up liblog4j1.2-java (1.2.17-7+deb9u1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libpackage-stash-xs-perl (0.28-3+b1) ... Setting up libamd2:amd64 (1:4.5.4-1) ... Setting up libxml-commons-resolver1.1-java (1.2-7) ... Setting up libjbig2dec0:amd64 (0.13-4.1) ... Setting up libstrictures-perl (2.000003-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libmpx2:amd64 (6.3.0-18+deb9u1) ... Setting up libisl15:amd64 (0.18-1) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libx11-xcb1:amd64 (2:1.6.4-3+deb9u1) ... Setting up libntlm0:amd64 (1.4-8) ... Setting up libfann2:amd64 (2.2.0+ds-3) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up autodock-vina (1.1.2-3+b6) ... Setting up libnb-org-openide-util-lookup-java (8.1+dfsg1-5) ... Setting up libservlet3.1-java (8.5.54-0+deb9u1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up soapdenovo (1.05-3) ... Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up patch (2.7.5-1+deb9u2) ... Setting up proda (1.0-10) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up libngs-sdk-dev (1.3.0-2) ... Setting up libreadonly-perl (2.050-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libvecmath-java (1.5.2-5) ... Setting up varna (3-93+ds-1) ... Setting up libunwind8 (1.1-4.1) ... Setting up libmail-sendmail-perl (0.79.16-2) ... Setting up indelible (1.03-2+b1) ... Setting up libminimap0 (0.2-3+b1) ... Setting up libcarp-always-perl (0.12-1) ... Setting up fonts-crosextra-caladea (20130214-1) ... Setting up krb5-locales (1.15-1+deb9u1) ... Setting up libxz-java (1.6-1) ... Setting up openmpi-common (2.0.2-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up ttf-adf-gillius (0.20090423-2) ... Setting up seqprep (1.3.2-1) ... Setting up wise-data (2.4.1-19) ... Setting up libavalon-framework-java (4.2.0-9) ... Setting up phyutility (2.7.3-1) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up harvest-tools (1.3-1) ... Setting up libbsd-resource-perl (1.2910-1+b1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up publicsuffix (20190415.1030-0+deb9u1) ... Setting up libepoxy0:amd64 (1.3.1-2) ... Setting up fasttree (2.1.9-1) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up bzip2-doc (1.0.6-8.1) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Setting up libgetopt-euclid-perl (0.4.5-2) ... Setting up tantan (13-4) ... Setting up fonts-noto-hinted (20161116-1) ... Setting up garli (2.1-1) ... Setting up liburi-perl (1.71-1) ... Setting up repeatmasker-recon (1.08-3+b1) ... Setting up libcbf0:amd64 (0.9.2.2-1+b1) ... Setting up t1utils (1.39-2) ... Setting up libunixsocket-java (0.8-1) ... Setting up fastdnaml (1.2.2-11+b1) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up libjaxen-java (1.1.6-1+deb9u1) ... Setting up primer3 (2.3.7-3) ... Setting up libaprutil1:amd64 (1.5.4-3) ... Setting up biosquid (1.9g+cvs20050121-7) ... Setting up libsnappy1v5:amd64 (1.1.3-3) ... Setting up qttranslations5-l10n (5.7.1~20161021-1) ... Setting up meryl (0~20150903+r2013-3) ... Setting up libcommons-pool-java (1.6-3) ... Setting up libfakeroot:amd64 (1.21-3.1) ... Setting up libnanoxml2-java (2.2.3.dfsg-5) ... Setting up libjs-jquery-datatables (1.10.13+dfsg-2) ... Setting up dindel (1.01+dfsg-4+b1) ... Setting up python-babel-localedata (2.3.4+dfsg.1-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up libf2j-java (0.8.1+dfsg-2) ... Setting up fonts-ebgaramond (0.016-1) ... Setting up libscalar-list-utils-perl (1:1.47-1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libmuscle-3.7-1 (3.7+4565-2) ... Setting up snpomatic (1.0-3+b1) ... Setting up libpvm3:amd64 (3.4.6-1+b2) ... Setting up piler (0~20140707-1+b1) ... Setting up libqes0 (0.2.7-1) ... Setting up libgetopt-simple-perl (1.52-5) ... Setting up libmtdev1:amd64 (1.1.5-1+b1) ... Setting up libtablelayout-java (20090826-3) ... Setting up libapache-pom-java (10-2) ... Setting up ncbi-seg (0.0.20000620-3+b1) ... Setting up docutils-doc (0.13.1+dfsg-2) ... Setting up f2j (0.8.1+dfsg-2) ... Setting up libfml0 (0.1-2+b1) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libvte-common (1:0.28.2-5) ... Setting up glam2 (1064-3+b1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up sphinx-common (1.4.9-2) ... Setting up libreadline-dev:amd64 (7.0-3) ... Setting up fonts-croscore (20161116-1) ... Setting up mcl (1:14-137-1+b1) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libfile-grep-perl (0.02-1) ... Setting up libswing-layout-java (1.0.4-4) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up profnet-md (1.0.22-4) ... Setting up junit (3.8.2-8) ... Setting up libboost-atomic1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up netpbm (2:10.0-15.3+b2) ... Setting up libann0 (1.1.2+doc-6) ... Setting up libvisual-0.4-0:amd64 (0.4.0-10) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libmath-bezier-perl (0.01-2) ... Setting up libfontenc1:amd64 (1:1.1.3-1+b2) ... Setting up libcolamd2:amd64 (1:4.5.4-1) ... Setting up libdate-manip-perl (6.57-1) ... Setting up libio-string-perl (1.08-3) ... Setting up rdp-classifier-doc (2.10.2-1) ... Setting up libmldbm-perl (2.05-2) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libfribidi0:amd64 (0.19.7-1+deb9u1) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up probalign (1.4-5) ... Setting up libncbi-wvdb2 (2.8.1+dfsg-2) ... Setting up libitext1-java (1.4-6) ... Setting up libclone-perl (0.38-2+b1) ... Setting up ncl-tools (2.1.18+dfsg-2+b1) ... Setting up miniasm (0.2+dfsg-2+b1) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up profnet-snapfun (1.0.22-4) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up icedtea-netx-common (1.6.2-3.1+deb9u1) ... Setting up libfftw3-single3:amd64 (3.3.5-3) ... Setting up python-sympy-doc (1.0-3) ... Setting up libpotrace0 (1.13-3) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up libmopac7-1gf (1.15-6+b1) ... Setting up libx11-protocol-perl (0.56-7) ... Setting up flexbar (2.50-2+b1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up kraken (0.10.5~beta-2+b1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libxkbcommon0:amd64 (0.7.1-2~deb9u1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-3) ... Setting up libpcre32-3:amd64 (2:8.39-3) ... Setting up libatinject-jsr330-api-java (1.0+ds1-2) ... Setting up libnet-http-perl (6.12-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up rtax (0.984-5) ... Setting up librhino-java (1.7.7.1-1) ... Setting up nast-ier (20101212+dfsg1-1+b1) ... Setting up libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Setting up snap-aligner (1.0~beta.18+dfsg-1) ... Setting up libmpc3:amd64 (1.0.3-1+b2) ... Setting up pirs-profiles (2.0.2+dfsg-5.1) ... Setting up libbambamc0 (0.0.50-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libtest-pod-perl (1.51-1) ... Setting up poa (2.0+20060928-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up binutils (2.28-5) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up andi (0.10-2) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up libtext-format-perl (0.60-1) ... Setting up icu-devtools (57.1-6+deb9u4) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Setting up libgraphics-colornames-perl (2.11-7.1) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libdrm-radeon1:amd64 (2.4.74-1) ... Setting up fonts-gfs-didot (1.1-6) ... Setting up aglfn (1.7-3) ... Setting up parsinsert (1.04-2) ... Setting up liborc-0.4-0:amd64 (1:0.4.26-2) ... Setting up libpcre16-3:amd64 (2:8.39-3) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up profnet-chop (1.0.22-4) ... Setting up libthai-data (0.1.26-1) ... Setting up liberfa1:amd64 (1.3.0-2) ... Setting up liblzma-dev:amd64 (5.2.2-1.2+b1) ... Setting up scrm (1.7.2-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up javascript-common (11) ... Package apache2 is not configured yet. Will defer actions by package javascript-common. Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up tree-puzzle-doc (5.2-8) ... Setting up libgflags2v5 (2.1.2-4) ... Setting up libsquizz (0.99c+dfsg-1) ... Setting up libmems-1.6-1v5:amd64 (1.6.0+4725-4) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up perm (0.4.0-2) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up fonts-cmu (0.7.0-3) ... Setting up libdrm-nouveau2:amd64 (2.4.74-1) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up seqan-apps (2.3.1+dfsg-4) ... Setting up profphd-net (1.0.22-4) ... Setting up gff2ps (0.98d-5) ... Setting up libgmpxx4ldbl:amd64 (2:6.1.2+dfsg-1) ... Setting up barrnap (0.7+dfsg-2) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up bc (1.06.95-9+b3) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libstring-approx-perl (3.27-1+b4) ... Setting up ttf-adf-universalis (0.20090423-2) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libcommons-codec-java (1.10-1) ... Setting up libjson-perl (2.90-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libsub-uplevel-perl (0.2600-1) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up fonts-dejavu-extra (2.37-1) ... Setting up libparams-util-perl (1.07-3+b1) ... Setting up libnaga-java (3.0+svn80-1) ... Setting up fonts-freefont-ttf (20120503-6) ... Setting up libjs-jquery-metadata (11-3) ... Setting up ruby-minitest (5.9.0-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libvorbis0a:amd64 (1.3.5-4+deb9u2) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up libzzip-0-13:amd64 (0.13.62-3.2~deb9u1) ... Setting up fonts-sil-gentium (20081126:1.03-1) ... Setting up mustang (3.2.3-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up libsub-name-perl (0.21-1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libtext-csv-perl (1.33-2) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up manpages-dev (4.10-2) ... Setting up libnlopt0:amd64 (2.4.2+dfsg-2+b2) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up hicolor-icon-theme (0.15-1) ... Setting up fastahack (0.0+20160702-1+b1) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libslang2:amd64 (2.3.1-5) ... Setting up libpth20:amd64 (2.0.7-20+b2) ... Setting up cron (3.0pl1-128+deb9u1) ... Adding group `crontab' (GID 151) ... Done. update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libfile-copy-link-perl (0.140-2) ... Setting up libxpp3-java (1.1.4c-2) ... Setting up fonts-sil-gentium-basic (1.1-7) ... Setting up libpostscript-perl (0.06-2) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up libgetopt-java (1.0.14+dfsg-3) ... Setting up libfcgi-perl (0.78-2) ... Setting up minia (1.6906-1+b2) ... Setting up lua-lpeg:amd64 (1.0.0-1) ... Setting up autodock (4.2.6-3+b1) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libset-intspan-perl (1.19-1) ... Setting up proftmb (1.1.12-6+b1) ... Setting up libtexluajit2:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up fonts-gfs-olga (1.1-5) ... Setting up libxpp2-java (2.1.10-7) ... Setting up libcdt5 (2.38.0-17) ... Setting up libjs-modernizr (2.6.2+ds1-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libghemical-data (3.0.0-4.1) ... Setting up libguard-perl (1.023-1+b2) ... Setting up ssw-align (1.1-1+b1) ... Setting up libitext5-java (5.5.6-2) ... Setting up libitm1:amd64 (6.3.0-18+deb9u1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up gff2aplot (2.0-8+b1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libhamcrest-java (1.3-6) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libfile-slurper-perl (0.009-1) ... Setting up autopoint (0.19.8.1-2+deb9u1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libjellyfish-2.0-2 (2.2.6-1+b1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libhat-trie0:amd64 (0.0~git25f9e946-2) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up fonts-circos-symbols (0.69.4+dfsg-1) ... Setting up librelaxng-datatype-java (1.0+ds1-3) ... Setting up hyphy-common (2.2.7+dfsg-1) ... Setting up squizz (0.99c+dfsg-1) ... Setting up libsmithwaterman0 (0.0+20160702-1+b1) ... Setting up profnet-con (1.0.22-4) ... Setting up libconfig-general-perl (2.63-1) ... Setting up libsaxon-java (1:6.5.5-10) ... Setting up libcommons-cli-java (1.3.1-3) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up libngs-java (1.3.0-2) ... Setting up disulfinder (1.2.11-6) ... Setting up r-doc-html (3.3.3-1) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libclass-c3-perl (0.32-1) ... Setting up wigeon (20101212+dfsg1-1) ... Setting up libwrap0:amd64 (7.6.q-26) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libspiffy-perl (0.41-1) ... Setting up mailutils-common (1:3.1.1-1) ... Setting up fonts-roboto-hinted (2:0~20160106-2) ... Setting up libtest-warn-perl (0.32-1) ... Setting up king-probe (2.13.110909-2) ... Setting up fonts-lyx (2.2.2-1) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libwayland-server0:amd64 (1.12.0-1+deb9u1) ... Setting up netbase (5.4) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up fonts-dejavu (2.37-1) ... Setting up libwcs5:amd64 (5.16-1) ... Setting up swarm (2.1.12+dfsg-1) ... Setting up libopenblas-base (0.2.19-3) ... update-alternatives: using /usr/lib/openblas-base/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/openblas-base/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up augustus-data (3.2.3+dfsg-1) ... Setting up sumatra (1.0.20-1+b1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up dwgsim (0.1.11-3+b1) ... Setting up libai-fann-perl (0.10-3+b2) ... Setting up libregexp-common-perl (2016060801-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libedit2:amd64 (3.1-20160903-3) ... Setting up libnumber-format-perl (1.75-1) ... Setting up libgmp-dev:amd64 (2:6.1.2+dfsg-1) ... Setting up vcftools (0.1.14+dfsg-4+deb9u1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libnb-org-openide-util-java (8.1+dfsg1-5) ... Setting up libclass-c3-xs-perl (0.14-1+b1) ... Setting up cpp (4:6.3.0-4) ... Setting up libsub-install-perl (0.928-1) ... Setting up libmath-random-mt-perl (1.17-1+b2) ... Setting up libfindbin-libs-perl (2.150-1) ... Setting up binfmt-support (2.1.6-2) ... update-binfmts: warning: python3.5 already enabled in kernel. update-binfmts: warning: python2.7 already enabled in kernel. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up gnustep-base-common (1.24.9-3.1+deb9u1) ... Setting up libmath-vecstat-perl (0.08-1) ... Setting up libdevel-symdump-perl (2.17-1) ... Setting up libblosc1 (1.11.1+ds2-1) ... Setting up mafft (7.307-1) ... Setting up libtest-deep-perl (1.126-1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libbpp-seq9v5:amd64 (2.2.0-1+b1) ... Setting up libatlas3-base (3.10.3-1+b1) ... Setting up libparse-yapp-perl (1.05-12) ... Setting up libcommon-sense-perl (3.74-2) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libhpdf-2.2.1 (2.2.1-1.1+b1) ... Setting up cd-hit (4.6.6-2) ... Setting up libipc-sharelite-perl (0.17-4) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtry-tiny-perl (0.28-1) ... Setting up libdata-dumper-simple-perl (0.11-5) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libjs-jquery-tablesorter (11-3) ... Setting up profnet-norsnet (1.0.22-4) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up profnet-bval (1.0.22-4) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libobjc4:amd64 (6.3.0-18+deb9u1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libpcre3-dev:amd64 (2:8.39-3) ... Setting up snp-sites (2.3.2-1) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up liblog-log4perl-perl (1.48-1+deb9u1) ... Setting up libbz2-dev:amd64 (1.0.6-8.1) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libmath-tamuanova-perl (1.0.2-2+b4) ... Setting up libperl4-corelibs-perl (0.003-2+deb9u1) ... Setting up profbval (1.0.22-4) ... Setting up libpam-cap:amd64 (1:2.25-1) ... Setting up sysstat (11.4.3-2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up mash (1.1.1-2) ... Setting up progressivemauve (1.2.0+4713-2+b2) ... Setting up libtmglib3 (3.7.0-2) ... Setting up libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libconfig-inifiles-perl (2.94-1) ... Setting up tex-common (6.06) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libboost-timer1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libarchive-zip-perl (1.59-1+deb9u1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libmng1:amd64 (1.0.10+dfsg-3.1+b5) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2) ... Setting up libglpk40:amd64 (4.61-1) ... Setting up libfreecontact0v5:amd64 (1.0.21-5) ... Setting up libdbus-java (2.8-6) ... Setting up libgraphics-colorobject-perl (0.5.0-7.1) ... Setting up berkeley-express (1.5.1-3+b1) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libanyevent-perl (7.130-2) ... Setting up libio-pty-perl (1:1.08-1.1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.74-1) ... Setting up ttf-dejavu-core (2.37-1) ... Setting up grinder (0.5.4-1) ... Setting up libfile-which-perl (1.21-1) ... Setting up axe-demultiplexer (0.3.2+dfsg1-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libperlio-gzip-perl (0.19-1+b2) ... Setting up libtext-csv-xs-perl (1.26-1) ... Setting up profphd-utils (1.0.10-3+b1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up liberror-perl (0.17024-1) ... Setting up libdjvulibre21:amd64 (3.5.27.1-7) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libvariable-magic-perl (0.61-1) ... Setting up saint (2.5.0+dfsg-2+b1) ... Setting up transrate-tools (1.0.0-1+b1) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up apbs (1.4-1+b1) ... Setting up libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Setting up libgsl-dev (2.3+dfsg-1) ... Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up librole-tiny-perl (2.000005-1) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libarchive13:amd64 (3.2.2-2+deb9u2) ... Setting up librg-reprof-bundle-perl (1.0.1-4) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libgvpr2 (2.38.0-17) ... 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Setting up exim4-base (4.89-2+deb9u7) ... exim: DB upgrade, deleting hints-db Setting up libopenexr22:amd64 (2.2.0-11+b1) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up ttf-liberation (1:1.07.4-2) ... Setting up libarray-utils-perl (0.5-1) ... Setting up libsub-identify-perl (0.12-2+b1) ... Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up gnuplot-data (5.0.5+dfsg1-6+deb9u1) ... Setting up tcpd (7.6.q-26) ... Setting up libtypes-serialiser-perl (1.0-1) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libdsdp-5.8gf (5.8-9.4) ... Setting up libyaml-tiny-perl (1.70-1) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-2) ... Setting up mapsembler2 (2.2.3+dfsg-3+b1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libdevel-caller-perl (2.06-1+b4) ... 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Setting up automake (1:1.15-6) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up bioperl (1.7.1-2) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up norsnet (1.0.17-2) ... Setting up libfreehep-graphics2d-java (2.1.1-5) ... Setting up libdconf1:amd64 (0.26.0-2+b1) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up rubygems-integration (1.11) ... Setting up libwebpdemux2:amd64 (0.5.2-1) ... Setting up libexpat1-dev:amd64 (2.2.0-2+deb9u3) ... Setting up liblapacke (3.7.0-2) ... Setting up libarpack2 (3.4.0-1+b1) ... Setting up man-db (2.7.6.1-2) ... Building database of manual pages ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up libgudev-1.0-0:amd64 (230-3) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libpython2.7-dev:amd64 (2.7.13-2+deb9u3) ... Setting up smithwaterman (0.0+20160702-1+b1) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libeval-closure-perl (0.14-1) ... Setting up libfreehep-swing-java (2.0.3-4) ... Setting up libcolord2:amd64 (1.3.3-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libpng-dev:amd64 (1.6.28-1+deb9u1) ... Setting up dbus (1.10.32-0+deb9u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libvorbisenc2:amd64 (1.3.5-4+deb9u2) ... Setting up libcaca0:amd64 (0.99.beta19-2.1~deb9u1) ... Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up jarwrapper (0.59) ... Setting up libdbd-mysql-perl (4.041-2) ... Setting up altree (1.3.1-4+b2) ... Setting up libcommons-lang-java (2.6-6) ... Setting up libqt4-test:amd64 (4:4.8.7+dfsg-11) ... Setting up libfile-mimeinfo-perl (0.27-1) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up rapmap (0.4.0+dfsg-2) ... Setting up python2.7-dev (2.7.13-2+deb9u3) ... Setting up libjas-plotter-java (2.2.6+dfsg1-3) ... Setting up libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libw ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m11.0s ERROR: Command failed (status=-15): ['chroot', '/srv/piuparts.debian.org/tmp/tmplpr_664k', 'apt-get', '-y', 'install', 'science-biology'] Reading package lists... Building dependency tree... The following additional packages will be installed: abacas abyss acedb-other acedb-other-belvu acedb-other-dotter adapterremoval adun-core adwaita-icon-theme aegean aevol aglfn alien-hunter alter-sequence-alignment altree amap-align ampliconnoise andi anfo ant ant-optional apache2 apache2-bin apache2-data apache2-utils apbs aragorn arden ariba art-nextgen-simulation-tools artemis artfastqgenerator astro-tasks at-spi2-core atac augustus augustus-data autoconf autodock autodock-vina autogrid automake autopoint autotools-dev axe-demultiplexer ballview bamtools barrnap bauble bc bcftools beagle beast-mcmc beast2-mcmc bedtools beignet-opencl-icd berkeley-express binfmt-support binutils bio-eagle bio-rainbow bioperl bioperl-run biosquid blasr blast2 blends-common blt bowtie bowtie2 boxshade brig bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs cgview chimeraslayer circlator circos circos-tools clearcut clonalframe clustalo clustalw clustalx codonw concavity conservation-code cpp cpp-6 crac critterding cron curl cutadapt cython daligner dascrubber datamash dawg dazzdb dbus dbus-java-bin dconf-gsettings-backend dconf-service debhelper debichem-tasks default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism dialign dialign-tx dialign-tx-data dindel dirmngr discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dpkg-dev dssp dvipng dwgsim ea-utils ecopcr edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate f2j fakeroot falcon fastahack fastaq fastdnaml fastjar fastlink fastml fastqc fastqtl fasttree fastx-toolkit ffindex figtree file filo fitgcp flexbar fml-asm fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-mathjax fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre fop freecontact freeglut3 fsa fsm-lite g++ g++-6 gamgi garli garlic gasic gawk gbrowse gcc gcc-6 gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-6 ghemical ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnome-icon-theme gnupg gnupg-agent gnupg-l10n gnuplot gnuplot-data gnuplot-qt gnustep-base-common gnustep-base-runtime 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libclone-perl libcneartree5 libcolamd2 libcolord2 libcolt-free-java libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-configuration-java libcommons-dbcp-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-net-java libcommons-parent-java libcommons-pool-java libconcurrent-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcqrlib2 libcroco3 libcrypt-rc4-perl libcrypto++6 libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libcvector2 libdata-dumper-simple-perl libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdbus-java libdconf1 libdevel-caller-perl 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r-recommended rake rambo-k rapmap rasmol raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-classifier-doc rdp-readseq readline-common readseq reapr relion-bin+gui rename repeatmasker-recon reprof rhino rna-star rnahybrid roary rsem rsync rtax ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration saint salmon samtools science-config science-tasks scrm scythe seaview seer seqan-apps seqprep seqtk sga sgml-base shared-mime-info sibsim4 sickle sigma-align sim4 sim4db smalt smithwaterman smrtanalysis snap snap-aligner sniffles snp-sites snpomatic soapdenovo soapdenovo2 sortmerna spaced spades sphinx-common sphinx-rtd-theme-common sprai spread-phy sqlite3 squizz sra-toolkit srst2 ssake ssl-cert sspace ssw-align stacks staden staden-common staden-io-lib-utils subread suitename sumaclust sumatra sumtrees surankco swarm swi-prolog swi-prolog-nox swi-prolog-x sysstat t-coffee t1utils tabix tantan tasksel tasksel-data tcl tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc texlive-science texlive-science-doc theseus tigr-glimmer time tipa tk tk8.6 tk8.6-blt2.5 tklib tm-align tophat toppred transdecoder transrate-tools transtermhp tree-puzzle tree-puzzle-doc treeview treeviewx trimmomatic trinityrnaseq trinityrnaseq-examples ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-liberation tzdata uc-echo ucf unzip varna vcftools velvet velvetoptimiser vsearch wigeon wise wise-data x11-common x11-utils x11-xserver-utils xauth xbitmaps xdg-user-dirs xdg-utils xfonts-100dpi xfonts-encodings xfonts-utils xkb-data xml-core xsltproc xterm xz-utils zalign zip zlib1g-dev Suggested packages: altree-examples ant-doc ant-gcj default-jdk | java-compiler | java-sdk ant-optional-gcj antlr javacc jython libbcel-java libmail-java libjdepend-java libjsch-java liboro-java libregexp-java apache2-doc apache2-suexec-pristine | apache2-suexec-custom art-nextgen-simulation-tools-profiles autoconf-archive gnu-standards autoconf-doc autodocktools beagle-doc beast-mcmc-doc beast2-mcmc-doc binutils-doc bio-eagle-examples gmap paml blends-doc blt-demo bowtie-examples bowtie2-examples xfig wamerican | wordlist whois vacation devscripts cpp-doc gcc-6-locales anacron logrotate checksecurity cython-doc default-dbus-session-bus | dbus-session-bus dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring meshlab embassy emboss-doc emboss-test eximon4 exim4-doc-html | exim4-doc-info spf-tools-perl swaks fastlink-doc fastqtl-doc fonts-noto fontforge fop-doc bash-completion g++-multilib g++-6-multilib gcc-6-doc libstdc++6-6-dbg gamgi-data gamgi-doc garlic-doc openbabel gawk-doc gbrowse-data gbrowse-calign libfile-nfslock-perl gcc-multilib flex bison gdb gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gdpc-examples gqview gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev ghostscript-x parcimonie xloadimage scdaemon gnuplot-doc gnustep-base-doc graphviz-doc groff tcsh | c-shell gvfs hmmer-doc hmmer2-doc hmmer2-pvm imagemagick-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils transfig ufraw-batch isoquery junit-doc libevent-perl libio-async-perl libpoe-perl lrzip libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc nas libdigest-hmac-perl libgssapi-perl libavalon-framework-java-doc libxml-sax-expatxs-perl java-virtual-machine libjgrapht-java libbiojava-java-doc liblapack-doc-man liblapack-doc bsh glibc-doc colord libcommons-collections3-java-doc libcommons-collections4-java-doc libcommons-beanutils-java libcommons-digester-java libcommons-jxpath-java libcommons-vfs-java libcommons-dbcp-java-doc libgeronimo-jta-1.1-spec-java libcommons-io-java-doc libcommons-jexl2-java-doc libcommons-lang-java-doc libcommons-lang3-java-doc libcommons-logging-java-doc libexcalibur-logkit-java libcommons-net-java-doc cups-common libnet-daemon-perl libsql-statement-perl libdbus-java-doc libdom4j-java-doc libfann-dev libfann-doc libfftw3-bin libfftw3-dev fuse fonts-dustin libgd-tools libgetopt-java-doc glew-utils libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev gnutls-bin gpm gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libvisual-0.4-plugins gstreamer1.0-tools libhsqldb-java-doc libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins icu-doc libdb-file-lock-perl libfile-readbackwards-perl libbcpkix-java libbcprov-java libxml-security-java libitext5-java-doc libjargs-java-doc libjaxp1.3-java-gcj libjdom1-java-doc libjline-java-doc libjmol-java-doc libjs-jquery-ui-docs fonts-mathjax-extras libjs-mathjax-doc libjsr305-java-doc liblcms2-utils libdbd-csv-perl liblog-dispatch-filerotate-perl librrds-perl liblog4j1.2-java-doc libtool-doc libcrypt-ssleay-perl liblzma-doc inkscape libmatthew-java-doc libmbedtls-doc libmojolicious-perl libnanoxml2-java-doc ncurses-doc opus-tools uuid libscalar-number-perl pciutils pcscd pulseaudio libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer libqt4-dev qt5-image-formats-plugins qtwayland5 qt4-qtconfig readline-doc librsvg2-bin libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libsaxon-java-doc lm-sensors libnet-jabber-perl libstdc++-6-doc libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libswing-layout-java-doc gcj-jdk tre-agrep libauthen-ntlm-perl libxalan2-java-doc libxsltc-java libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc libunicode-map8-perl libunicode-string-perl xml-twig-tools libxmlgraphics-commons-java-doc libxom-java-doc libyaml-shell-perl loki-doc m4-doc maffilter-examples mailutils-mh mailutils-doc make-doc less massxpert-doc mcl-doc acacia adun.app amos-assembler amoscmp apollo arachne arb asap axparafit axpcoords bagpipe baitfisher bambus beads bedops biceps big-blast bigsdb bio-tradis biomaj biomaj-watcher bitseq blat blimps-utils blixem blobology btk-core cactus caftools cain canu cap3 ccs cdna-db cinema clonalorigin cluster3 cmap cnvkit coalesce compclust condetri contrafold contralign coot copycat crossbow crux-toolkit cufflinks cytoscape das-proserver dazzle decipher deepnano diamond-aligner e-hive ecell elph embassy-phylip emboss-explorer emmax emperor ensembl est-db estferret estscan euler-sr euler2 exabayes exalt examl excavator fasta fasta3 ffp figaro finex fluctuate forester forge freebayes galaxy gassst gatk gbioseq gbrowse-syn genemark genesplicer genetrack genezilla genographer getdata glimmerhmm gmv grabix grogui haploview hawkeye hexamer hilbertvisgui htqc igv inspect jalview jbrowse jigsaw jstreeview kclust kempbasu lagan lamarc lofreq logomat-m lucy mach-haplotyper mage2tab maker2 malt manta martj maude maxd melting-gui meme mesquite metabit metarep metastudent-data-2 metastudent-data-3 mgltools-cadd mgltools-pmv mgltools-vision migrate minimus mirbase mobyle mobyle-programs mobyle-tutorials modeller molekel mosaik-aligner mpsqed mptp mrs msatfinder mugsy mummergpu mview nanocall nextsv ngila ngsqctoolkit nw-align oases obitools obo-edit oligoarrayaux omegamap openms operondb pal2nal paleomix partigene partitionfinder patman patristic pcma pfaat pftools phagefinder phast phpphylotree phylographer phylophlan phyloviz-core phylowin pipasic plato profit prokka prot4est pscan-tfbs psipred psortb pssh2 pyrophosphate-tools python-orange python-reaper python3-biomaj3 qcumber qiime qtlcart qualimap r-bioc-aroma.light r-bioc-go.db r-bioc-savr r-cran-boolnet r-cran-metamix r-cran-pheatmap r-cran-qqman r-other-apmswapp r-other-valdar-bagphenotype.library raccoon radiant raxml-ng rbs-finder recombine repeatmasker rmblast roadtrips roche454ace2caf roguenarok rose rosetta rsat runcircos-gui sambamba sap science-workflow segemehl seq-gen seqsero sequenceconverter.app sift situs snpeff sparta spice splitstree ssaha strap strap-base tacg taverna taxinspector tetra tide tigr-glimmer-mg tnseq-transit topp trace2dbest tracetuner treebuilder3d treetime tripal trnascan-se tvc twain ugene unc-fish uniprime varmatch varscan vienna-rna vmd x-tandem-pipeline zodiac-zeden menu-l10n gksu | kde-runtime | ktsuss gridengine-client mira-doc mpqc-support mrbayes-doc mustang-testdata icedtea-8-plugin libnss-mdns fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic keychain libpam-ssh monkeysphere ssh-askpass ed diffutils-doc pbalign-doc libterm-readline-gnu-perl | libterm-readline-perl-perl perlprimer-doc phylip-doc pinentry-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra profchop profcon metadisorder profphd snapfun pdf-viewer uclust python-doc libxml2-utils python-astropy-affiliated python-astropy-doc python-beautifulsoup python-biom-format-doc python-rdflib python-psycopg2 python-cogent-doc python-configobj-doc python-crypto-dbg python-crypto-doc python-cryptography-doc python-cryptography-vectors python-cycler-doc texlive-lang-french python-egenix-mxdatetime-dbg python-egenix-mxdatetime-doc python-egenix-mxtools-dbg python-egenix-mxtools-doc python-enum34-doc python-future-doc python-gdata-doc python-twisted-core python-gtk2-doc python-gmpy-doc python-gobject-2-dbg python-h5py-doc python-genshi python-jinja2-doc python-pybigwig python-lmfit-doc python-lxml-dbg python-lxml-doc python-beaker python-mako-doc gir1.2-gtk-3.0 python-cairocffi python-excelerator python-gobject python-matplotlib-doc python-tornado python-traits ttf-staypuft python-gmpy2 python-mpmath-doc default-mysql-server | virtual-mysql-server python-mysqldb-dbg python-networkx-doc python-coverage python-nose-doc python-numpy-dbg python-numpy-doc libgle3 python-openssl-doc python-openssl-dbg python-pandas-doc python-patsy-doc python-pbcore-doc python-consensuscore2 python-pexpect-doc python-pil-doc python-pil-dbg python-ply-doc python-pmw-doc subversion python-pytest-xdist doc-base python-pygraphviz-doc python-pyparsing-doc python-pysqlite2-doc python-pysqlite2-dbg python-mock python-qt4-dbg python-renderpm-dbg python-egenix-mxtexttools python-reportlab-doc python-socks python-rpy-docs python-drmaa python-scipy-doc python-setuptools-doc python-dap python-scikits-optimization python-sklearn-doc python-sortedcontainers-doc python-sphinx-rtd-theme sphinx-doc python-sqlalchemy-doc python-fdb python-pymssql python-statsmodels-doc python-tables-doc python-netcdf vitables tix python-tk-dbg python-ntlm wx3.0-doc python2.7-doc python3-doc python3-tk python3-venv python3-matplotlib python3-rdflib python3-psycopg2 python3-genshi python3-lxml-dbg python3-dev python3-numpy-dbg python3-pil-dbg python3-setuptools python3-renderpm-dbg python3-egenix-mxtexttools python3.5-venv python3.5-doc qtltools-example ess r-doc-info | r-doc-pdf texinfo r-cran-runit r-bioc-graph r-cran-batchjobs r-cran-bbmisc r-cran-rmpi r-bioc-shortread r-bioc-affy r-cran-rjson r-cran-biasedurn r-cran-statmod r-cran-gss r-bioc-snpstats r-cran-maptools r-cran-expm r-cran-rms r-cran-ncdf4 r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-hexbin r-cran-xts r-cran-caret r-cran-rmysql r-cran-polyclip r-cran-mlbench r-cran-lahman r-cran-genetics r-cran-haplo.stats r-cran-mapproj r-cran-multcomp r-cran-quantreg r-cran-testit r-cran-png r-cran-formatr r-cran-tikzdevice r-cran-rjags r-cran-mapdata r-cran-abind r-cran-dbitest r-cran-cairo r-cran-rsprng r-cran-rlecuyer r-cran-devtools rasmol-doc raster3d-doc librhino-java-doc openssh-server ri ruby-dev bundler avida-base genesis med-bio-dev sgml-base-doc sqlite3-doc ssake-examples openssl-blacklist staden-io-lib-examples prolog-el isag t-coffee-examples tcl-tclreadline net-tools tcllib-critcl xpdf-reader | pdf-viewer chktex dvidvi fragmaster lacheck latexdiff latexmk purifyeps xindy psutils cm-super dot2tex prerex ruby-tcltk | libtcltk-ruby theseus-examples treetool collectl velvet-example wise-doc nickle cairo-5c xorg-docs-core gvfs-bin xfs | xserver xfonts-cyrillic Recommended packages: predictprotein profphd relion-bin | relion-bin+mpi python-consensuscore2 The following NEW packages will be installed: abacas abyss acedb-other acedb-other-belvu acedb-other-dotter adapterremoval adun-core adwaita-icon-theme aegean aevol aglfn alien-hunter alter-sequence-alignment altree amap-align ampliconnoise andi anfo ant ant-optional apache2 apache2-bin apache2-data apache2-utils apbs aragorn arden ariba art-nextgen-simulation-tools artemis artfastqgenerator astro-tasks at-spi2-core atac augustus augustus-data autoconf autodock autodock-vina autogrid automake autopoint autotools-dev axe-demultiplexer ballview bamtools barrnap bauble bc bcftools beagle beast-mcmc beast2-mcmc bedtools beignet-opencl-icd berkeley-express binfmt-support binutils bio-eagle bio-rainbow bioperl bioperl-run biosquid blasr blast2 blends-common blt bowtie bowtie2 boxshade brig bsdmainutils build-essential bwa bzip2 bzip2-doc ca-certificates ca-certificates-java cassiopee cd-hit cdbfasta cdbs cgview chimeraslayer circlator circos circos-tools clearcut clonalframe clustalo clustalw clustalx codonw concavity conservation-code cpp cpp-6 crac critterding cron curl cutadapt cython daligner dascrubber datamash dawg dazzdb dbus dbus-java-bin dconf-gsettings-backend dconf-service debhelper debichem-tasks default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism dialign dialign-tx dialign-tx-data dindel dirmngr discosnp disulfinder disulfinder-data dmidecode dnaclust docutils-common docutils-doc dpkg-dev dssp dvipng dwgsim ea-utils ecopcr edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss emboss-data emboss-lib exim4 exim4-base exim4-config exim4-daemon-light exonerate f2j fakeroot falcon fastahack fastaq fastdnaml fastjar fastlink fastml fastqc fastqtl fasttree fastx-toolkit ffindex figtree file filo fitgcp flexbar fml-asm fontconfig fontconfig-config fonts-cabin fonts-circos-symbols fonts-cmu fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-junicode fonts-lato fonts-liberation fonts-linuxlibertine fonts-lmodern fonts-lobster fonts-lobstertwo fonts-lyx fonts-mathjax fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-roboto-hinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre fop freecontact freeglut3 fsa fsm-lite g++ g++-6 gamgi garli garlic gasic gawk gbrowse gcc gcc-6 gdpc genometools genometools-common gentle gettext gettext-base gff2aplot gff2ps gfortran gfortran-6 ghemical ghostscript giira glam2 glib-networking glib-networking-common glib-networking-services glpk-utils gnome-icon-theme gnupg gnupg-agent gnupg-l10n gnuplot gnuplot-data gnuplot-qt gnustep-base-common gnustep-base-runtime gnustep-common graphlan graphviz grinder groff-base gromacs gromacs-data gsettings-desktop-schemas gsfonts gstreamer1.0-plugins-base gtk-update-icon-cache gubbins guile-2.0-libs gwama harvest-tools hdf5-tools hhsuite hhsuite-data hicolor-icon-theme hilive hisat2 hmmer hmmer2 hyphy-common hyphy-mpi hyphygui icc-profiles-free icedtea-netx-common icu-devtools idba imagemagick imagemagick-6-common imagemagick-6.q16 indelible infernal intltool-debian ipig ipython iqtree iso-codes isympy isympy-common iva jaligner jarwrapper java-common java-wrappers javascript-common jellyfish jemboss jmodeltest jmol junit junit4 kalign khmer khmer-common kineticstools kineticstools-data king-probe kissplice kmc kmer kraken krb5-locales ksh lambda-align laptop-detect last-align leaff lefse libace-perl libaec0 libai-fann-perl libalgorithm-c3-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libalgorithm-munkres-perl libamd2 libanfo0 libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache-pom-java libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libarchive-zip-perl libarchive13 libargtable2-0 libarmadillo7 libarpack2 libarray-compare-perl libarray-utils-perl libart-2.0-2 libasan3 libasound2 libasound2-data libassuan0 libasync-interrupt-perl libasyncns0 libatinject-jsr330-api-java libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatlas3-base libatomic1 libatspi2.0-0 libaudio2 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavalon-framework-java libb-hooks-endofscope-perl libball1.4 libball1.4-data libballview1.4 libbambamc0 libbamtools2.4.0 libbatik-java libbio-asn1-entrezgene-perl libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbiojava-java libbiojava1.7-java libbit-vector-perl libblas-common libblas-dev libblas3 libblasr libblosc1 libboost-atomic1.62.0 libboost-chrono1.62.0 libboost-date-time1.62.0 libboost-filesystem1.62.0 libboost-iostreams1.62.0 libboost-mpi1.62.0 libboost-program-options1.62.0 libboost-regex1.62.0 libboost-serialization1.62.0 libboost-system1.62.0 libboost-thread1.62.0 libboost-timer1.62.0 libbpp-core2v5 libbpp-phyl-omics1v5 libbpp-phyl9v5 libbpp-seq-omics1v5 libbpp-seq9v5 libbsd-resource-perl libbsd0 libbsf-java libbytecode-java libbz2-dev libc-dev-bin libc6-dev libcaca0 libcache-cache-perl libcairo-gobject2 libcairo2 libcap2 libcap2-bin libcapnp-0.5.3 libcapture-tiny-perl libcarp-always-perl libcarp-clan-perl libcassie1v5 libcbf0 libcc1-0 libcdparanoia0 libcdt5 libcfitsio5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libcilkrts5 libclass-c3-perl libclass-c3-xs-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-tiny-perl libclass-xsaccessor-perl libclone-perl libcneartree5 libcolamd2 libcolord2 libcolt-free-java libcommon-sense-perl libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-configuration-java libcommons-dbcp-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-net-java libcommons-parent-java libcommons-pool-java libconcurrent-java libconfig-general-perl libconfig-inifiles-perl libconvert-binary-c-perl libconvert-binhex-perl libcqrlib2 libcroco3 libcrypt-rc4-perl libcrypto++6 libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl3-gnutls libcvector2 libdata-dumper-simple-perl libdata-optlist-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdbus-java libdconf1 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r-cran-phylobase r-cran-pkgkitten r-cran-pkgmaker r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-progress r-cran-pscbs r-cran-qtl r-cran-quadprog r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-randomforest r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl r-cran-rcurl r-cran-readxl r-cran-registry r-cran-rentrez r-cran-reshape r-cran-reshape2 r-cran-rgl r-cran-ritis r-cran-rlumshiny r-cran-rncl r-cran-rnexml r-cran-rngtools r-cran-rocr r-cran-rotl r-cran-rpart r-cran-rredlist r-cran-rsqlite r-cran-scales r-cran-scatterd3 r-cran-segmented r-cran-seqinr r-cran-shape r-cran-shiny r-cran-shinybs r-cran-snow r-cran-solrium r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatial r-cran-spdep r-cran-stringi r-cran-stringr r-cran-survival r-cran-taxize r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-treescape r-cran-uuid r-cran-vegan r-cran-viridis r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml r-cran-zoo r-doc-html r-mathlib r-other-mott-happy.hbrem r-recommended rake rambo-k rapmap rasmol raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-classifier-doc rdp-readseq readline-common readseq reapr relion-bin+gui rename repeatmasker-recon reprof rhino rna-star rnahybrid roary rsem rsync rtax ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration saint salmon samtools science-biology science-config science-tasks scrm scythe seaview seer seqan-apps seqprep seqtk sga sgml-base shared-mime-info sibsim4 sickle sigma-align sim4 sim4db smalt smithwaterman smrtanalysis snap snap-aligner sniffles snp-sites snpomatic soapdenovo soapdenovo2 sortmerna spaced spades sphinx-common sphinx-rtd-theme-common sprai spread-phy sqlite3 squizz sra-toolkit srst2 ssake ssl-cert sspace ssw-align stacks staden staden-common staden-io-lib-utils subread suitename sumaclust sumatra sumtrees surankco swarm swi-prolog swi-prolog-nox swi-prolog-x sysstat t-coffee t1utils tabix tantan tasksel tasksel-data tcl tcl8.6 tcllib tcpd tex-common tex-gyre texlive-base texlive-binaries texlive-extra-utils texlive-font-utils texlive-fonts-extra texlive-fonts-extra-doc texlive-fonts-recommended texlive-fonts-recommended-doc texlive-generic-extra texlive-generic-recommended texlive-latex-base texlive-latex-base-doc texlive-latex-extra texlive-latex-extra-doc texlive-latex-recommended texlive-latex-recommended-doc texlive-pictures texlive-pictures-doc texlive-pstricks texlive-pstricks-doc texlive-science texlive-science-doc theseus tigr-glimmer time tipa tk tk8.6 tk8.6-blt2.5 tklib tm-align tophat toppred transdecoder transrate-tools transtermhp tree-puzzle tree-puzzle-doc treeview treeviewx trimmomatic trinityrnaseq trinityrnaseq-examples ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis ttf-bitstream-vera ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ttf-liberation tzdata uc-echo ucf unzip varna vcftools velvet velvetoptimiser vsearch wigeon wise wise-data x11-common x11-utils x11-xserver-utils xauth xbitmaps xdg-user-dirs xdg-utils xfonts-100dpi xfonts-encodings xfonts-utils xkb-data xml-core xsltproc xterm xz-utils zalign zip zlib1g-dev 0 upgraded, 2020 newly installed, 0 to remove and 0 not upgraded. Need to get 3556 MB of archives. After this operation, 9812 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 cron amd64 3.0pl1-128+deb9u1 [95.4 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 tasksel-data all 3.39 [18.1 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 tasksel all 3.39 [94.6 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libapr1 amd64 1.5.2-5 [96.6 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 apache2-bin amd64 2.4.25-3+deb9u9 [1185 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 apache2-utils amd64 2.4.25-3+deb9u9 [218 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 apache2-data all 2.4.25-3+deb9u9 [162 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 apache2 amd64 2.4.25-3+deb9u9 [237 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 fonts-liberation all 1:1.07.4-2 [827 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 fonts-lato all 2.0-1 [2684 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libart-2.0-2 amd64 2.3.21-2 [72.7 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libaudio2 amd64 1.9.4-5+b1 [79.9 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libcdparanoia0 amd64 3.10.2+debian-11 [56.6 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libatk1.0-data all 2.22.0-1 [172 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libatk1.0-0 amd64 2.22.0-1 [78.4 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-common all 2.36.5-2+deb9u2 [311 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-0 amd64 2.36.5-2+deb9u2 [170 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-common all 2.24.31-2 [2693 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libavahi-common-data amd64 0.6.32-2 [118 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 hicolor-icon-theme all 0.15-1 [9550 B] Get:124 http://deb.debian.org/debian stretch/main amd64 gtk-update-icon-cache amd64 3.22.11-1 [76.6 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 libcroco3 amd64 0.6.11-3 [143 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 librsvg2-2 amd64 2.40.16-1+b1 [281 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 librsvg2-common amd64 2.40.16-1+b1 [194 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 gnome-icon-theme all 3.12.0-2 [9890 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 adwaita-icon-theme all 3.22.0-1+deb9u1 [11.5 MB] Get:130 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-0 amd64 2.24.31-2 [1800 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libglade2-0 amd64 1:2.6.4-2 [81.8 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 liblqr-1-0 amd64 0.4.2-2+b2 [24.8 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 libfftw3-double3 amd64 3.3.5-3 [731 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 libopenjp2-7 amd64 2.1.2-1.1+deb9u4 [122 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 imagemagick-6-common all 8:6.9.7.4+dfsg-11+deb9u8 [185 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 libmagickcore-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [1743 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 libmagickwand-6.q16-3 amd64 8:6.9.7.4+dfsg-11+deb9u8 [423 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 libmotif-common all 2.3.4-13 [28.4 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 libogg0 amd64 1.3.2-1 [19.9 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 libpcrecpp0v5 amd64 2:8.39-3 [151 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 libdouble-conversion1 amd64 2.0.1-4 [33.7 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 libpcre16-3 amd64 2:8.39-3 [258 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 libqt5core5a amd64 5.7.1+dfsg-3+deb9u2 [1839 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 libdrm2 amd64 2.4.74-1 [36.2 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 libwayland-client0 amd64 1.12.0-1+deb9u1 [25.1 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 libwayland-server0 amd64 1.12.0-1+deb9u1 [30.6 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 libgbm1 amd64 13.0.6-1+b2 [59.2 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:155 http://deb.debian.org/debian stretch/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 libxcb-xfixes0 amd64 1.12-1 [99.6 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:158 http://deb.debian.org/debian stretch/main amd64 libegl1-mesa amd64 13.0.6-1+b2 [112 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libevdev2 amd64 1.5.6+dfsg-1 [30.0 kB] Get:164 http://deb.debian.org/debian stretch/main amd64 libmtdev1 amd64 1.1.5-1+b1 [22.3 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libgudev-1.0-0 amd64 230-3 [12.9 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libwacom-common all 0.22-1 [31.3 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 libwacom2 amd64 0.22-1+b1 [18.0 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libinput-bin amd64 1.6.3-1 [11.1 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libinput10 amd64 1.6.3-1 [75.7 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 libqt5dbus5 amd64 5.7.1+dfsg-3+deb9u2 [217 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 libproxy1v5 amd64 0.4.14-2 [57.4 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 libqt5network5 amd64 5.7.1+dfsg-3+deb9u2 [593 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 libxcb-icccm4 amd64 0.4.1-1 [27.0 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 libxcb-randr0 amd64 1.12-1 [107 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 libxcb-render-util0 amd64 0.3.9-1 [18.0 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libxcb-xinerama0 amd64 1.12-1 [95.5 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libxcb-xkb1 amd64 1.12-1 [120 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 xkb-data all 2.19-1+deb9u1 [650 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 libxkbcommon0 amd64 0.7.1-2~deb9u1 [122 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 libxkbcommon-x11-0 amd64 0.7.1-2~deb9u1 [39.1 kB] Get:185 http://deb.debian.org/debian stretch/main amd64 libqt5gui5 amd64 5.7.1+dfsg-3+deb9u2 [2449 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 libqt5widgets5 amd64 5.7.1+dfsg-3+deb9u2 [2242 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libqt5svg5 amd64 5.7.1~20161021-2+b2 [130 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 libxm4 amd64 2.3.4-13 [1017 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 lua-md5 amd64 1.2+git+1+8d87fee-1 [13.1 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4 [32.4 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4 [63.2 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libboost-iostreams1.62.0 amd64 1.62.0+dfsg-4 [50.8 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-4 [288 kB] Get:197 http://deb.debian.org/debian stretch/main amd64 libboost-thread1.62.0 amd64 1.62.0+dfsg-4 [71.5 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 mira-assembler amd64 4.9.6-2 [2282 kB] Get:199 http://deb.debian.org/debian stretch/main amd64 mira-rfam-12s-rrna all 4.9.6-2 [10.4 MB] Get:200 http://deb.debian.org/debian stretch/main amd64 poppler-data all 0.4.7-8 [1451 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 libpython3.5-minimal amd64 3.5.3-1+deb9u1 [573 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 python3.5-minimal amd64 3.5.3-1+deb9u1 [1691 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 python3-minimal amd64 3.5.3-1 [35.3 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libpython3.5-stdlib amd64 3.5.3-1+deb9u1 [2167 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 python3.5 amd64 3.5.3-1+deb9u1 [229 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libpython3-stdlib amd64 3.5.3-1 [18.6 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 dh-python all 2.20170125 [86.8 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 python3 amd64 3.5.3-1 [21.6 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-metadata all 11-3 [7188 B] Get:213 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-tablesorter all 11-3 [43.9 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 libjs-twitter-bootstrap all 2.0.2+dfsg-10 [98.8 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-1 [31.5 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 dmidecode amd64 3.0-4 [68.3 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 libassuan0 amd64 2.4.3-2 [42.5 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 libnpth0 amd64 1.3-1 [14.6 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get:223 http://deb.debian.org/debian stretch/main amd64 gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 libpopt0 amd64 1.16-10+b2 [49.4 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 libslang2 amd64 2.3.1-5 [503 kB] Get:226 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:232 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 gettext-base amd64 0.19.8.1-2+deb9u1 [122 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:235 http://deb.debian.org/debian stretch/main amd64 libcap2 amd64 1:2.25-1 [16.8 kB] Get:236 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libgc1c2 amd64 1:7.4.2-8 [208 kB] Get:238 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:239 http://deb.debian.org/debian stretch/main amd64 libwrap0 amd64 7.6.q-26 [58.2 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 manpages all 4.10-2 [1222 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 openssh-client amd64 1:7.4p1-10+deb9u7 [780 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:243 http://deb.debian.org/debian stretch/main amd64 mummer amd64 3.23+dfsg-2 [809 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 abacas all 1.3.1-3 [23.9 kB] Get:245 http://deb.debian.org/debian stretch/main amd64 make amd64 4.1-9.1 [302 kB] Get:246 http://deb.debian.org/debian stretch/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:248 http://deb.debian.org/debian stretch/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:249 http://deb.debian.org/debian stretch/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:250 http://deb.debian.org/debian stretch/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:251 http://deb.debian.org/debian stretch/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:252 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:254 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:255 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:256 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:257 http://deb.debian.org/debian stretch/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:258 http://deb.debian.org/debian stretch/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:259 http://deb.debian.org/debian stretch/main amd64 libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:260 http://deb.debian.org/debian stretch/main amd64 abyss amd64 2.0.2-2 [1388 kB] Get:261 http://deb.debian.org/debian stretch/main amd64 adapterremoval amd64 2.2.0-1 [202 kB] Get:262 http://deb.debian.org/debian stretch/main amd64 gnustep-common amd64 2.6.8-2.1 [115 kB] Get:263 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:264 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:265 http://deb.debian.org/debian stretch/main amd64 gnustep-base-common all 1.24.9-3.1+deb9u1 [254 kB] Get:266 http://deb.debian.org/debian stretch/main amd64 libobjc4 amd64 6.3.0-18+deb9u1 [49.5 kB] Get:267 http://deb.debian.org/debian stretch/main amd64 libxslt1.1 amd64 1.1.29-2.1+deb9u2 [233 kB] Get:268 http://deb.debian.org/debian stretch/main amd64 libgnustep-base1.24 amd64 1.24.9-3.1+deb9u1 [1276 kB] Get:269 http://deb.debian.org/debian stretch/main amd64 libgsl2 amd64 2.3+dfsg-1 [893 kB] Get:270 http://deb.debian.org/debian stretch/main amd64 adun-core amd64 0.81-9+b2 [757 kB] Get:271 http://deb.debian.org/debian stretch/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:272 http://deb.debian.org/debian stretch/main amd64 libtre5 amd64 0.8.0-6 [58.5 kB] Get:273 http://deb.debian.org/debian stretch/main amd64 lua-filesystem amd64 1.6.3-1 [10.3 kB] Get:274 http://deb.debian.org/debian stretch/main amd64 lua-lpeg amd64 1.0.0-1 [30.4 kB] Get:275 http://deb.debian.org/debian stretch/main amd64 libpth20 amd64 2.0.7-20+b2 [78.5 kB] Get:276 http://deb.debian.org/debian stretch/main amd64 genometools-common all 1.5.9+ds-4 [171 kB] Get:277 http://deb.debian.org/debian stretch/main amd64 libgenometools0 amd64 1.5.9+ds-4 [1775 kB] Get:278 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-datatables all 1.10.13+dfsg-2 [135 kB] Get:279 http://deb.debian.org/debian stretch/main amd64 libjs-mootools all 1.4.5~debian1-2.1 [242 kB] Get:280 http://deb.debian.org/debian stretch/main amd64 aegean amd64 0.15.2+dfsg-1 [199 kB] Get:281 http://deb.debian.org/debian stretch/main amd64 aevol amd64 4.4-1+b4 [426 kB] Get:282 http://deb.debian.org/debian stretch/main amd64 libnspr4 amd64 2:4.12-6 [117 kB] Get:283 http://deb.debian.org/debian stretch/main amd64 libnss3 amd64 2:3.26.2-1.1+deb9u1 [1161 kB] Get:284 http://deb.debian.org/debian stretch/main amd64 ca-certificates-java all 20170929~deb9u3 [15.1 kB] Get:285 http://deb.debian.org/debian stretch/main amd64 java-common all 0.58+deb9u1 [13.6 kB] Get:286 http://deb.debian.org/debian stretch/main amd64 libpcsclite1 amd64 1.8.20-1 [56.5 kB] Get:287 http://deb.debian.org/debian stretch/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:288 http://deb.debian.org/debian stretch/main amd64 openjdk-8-jre-headless amd64 8u252-b09-1~deb9u1 [27.4 MB] Get:289 http://deb.debian.org/debian stretch/main amd64 default-jre-headless amd64 2:1.8-58+deb9u1 [10.1 kB] Get:290 http://deb.debian.org/debian stretch/main amd64 libatspi2.0-0 amd64 2.22.0-6+deb9u1 [60.9 kB] Get:291 http://deb.debian.org/debian stretch/main amd64 libatk-bridge2.0-0 amd64 2.22.0-2 [56.3 kB] Get:292 http://deb.debian.org/debian stretch/main amd64 libcairo-gobject2 amd64 1.14.8-1 [336 kB] Get:293 http://deb.debian.org/debian stretch/main amd64 libdconf1 amd64 0.26.0-2+b1 [37.6 kB] Get:294 http://deb.debian.org/debian stretch/main amd64 dconf-service amd64 0.26.0-2+b1 [34.7 kB] Get:295 http://deb.debian.org/debian stretch/main amd64 dconf-gsettings-backend amd64 0.26.0-2+b1 [26.4 kB] Get:296 http://deb.debian.org/debian stretch/main amd64 libgtk-3-common all 3.22.11-1 [3416 kB] Get:297 http://deb.debian.org/debian stretch/main amd64 libcolord2 amd64 1.3.3-2 [252 kB] Get:298 http://deb.debian.org/debian stretch/main amd64 libepoxy0 amd64 1.3.1-2 [176 kB] Get:299 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-common all 1.2.6-1 [166 kB] Get:300 http://deb.debian.org/debian stretch/main amd64 libjson-glib-1.0-0 amd64 1.2.6-1 [178 kB] Get:301 http://deb.debian.org/debian stretch/main amd64 glib-networking-common all 2.50.0-1+deb9u1 [49.2 kB] Get:302 http://deb.debian.org/debian stretch/main amd64 glib-networking-services amd64 2.50.0-1+deb9u1 [12.2 kB] Get:303 http://deb.debian.org/debian stretch/main amd64 gsettings-desktop-schemas all 3.22.0-1 [473 kB] Get:304 http://deb.debian.org/debian stretch/main amd64 glib-networking amd64 2.50.0-1+deb9u1 [57.0 kB] Get:305 http://deb.debian.org/debian stretch/main amd64 libsoup2.4-1 amd64 2.56.0-2+deb9u2 [296 kB] Get:306 http://deb.debian.org/debian stretch/main amd64 libsoup-gnome2.4-1 amd64 2.56.0-2+deb9u2 [16.4 kB] Get:307 http://deb.debian.org/debian stretch/main amd64 librest-0.7-0 amd64 0.8.0-2 [33.0 kB] Get:308 http://deb.debian.org/debian stretch/main amd64 libwayland-cursor0 amd64 1.12.0-1+deb9u1 [13.5 kB] Get:309 http://deb.debian.org/debian stretch/main amd64 libwayland-egl1-mesa amd64 13.0.6-1+b2 [43.0 kB] Get:310 http://deb.debian.org/debian stretch/main amd64 libgtk-3-0 amd64 3.22.11-1 [2529 kB] Get:311 http://deb.debian.org/debian stretch/main amd64 libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:312 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:313 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:314 http://deb.debian.org/debian stretch/main amd64 libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:315 http://deb.debian.org/debian stretch/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:316 http://deb.debian.org/debian stretch/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:317 http://deb.debian.org/debian stretch/main amd64 x11-utils amd64 7.7+3+b1 [202 kB] Get:318 http://deb.debian.org/debian stretch/main amd64 libatk-wrapper-java all 0.33.3-13+deb9u1 [44.1 kB] Get:319 http://deb.debian.org/debian stretch/main amd64 libatk-wrapper-java-jni amd64 0.33.3-13+deb9u1 [37.5 kB] Get:320 http://deb.debian.org/debian stretch/main amd64 libasound2-data all 1.1.3-5 [173 kB] Get:321 http://deb.debian.org/debian stretch/main amd64 libasound2 amd64 1.1.3-5 [497 kB] Get:322 http://deb.debian.org/debian stretch/main amd64 libgif7 amd64 5.1.4-0.4 [43.1 kB] Get:323 http://deb.debian.org/debian stretch/main amd64 libasyncns0 amd64 0.8-6 [12.5 kB] Get:324 http://deb.debian.org/debian stretch/main amd64 libflac8 amd64 1.3.2-1 [221 kB] Get:325 http://deb.debian.org/debian stretch/main amd64 libvorbis0a amd64 1.3.5-4+deb9u2 [91.7 kB] Get:326 http://deb.debian.org/debian stretch/main amd64 libvorbisenc2 amd64 1.3.5-4+deb9u2 [79.4 kB] Get:327 http://deb.debian.org/debian stretch/main amd64 libsndfile1 amd64 1.0.27-3 [248 kB] Get:328 http://deb.debian.org/debian stretch/main amd64 libpulse0 amd64 10.0-1+deb9u1 [283 kB] Get:329 http://deb.debian.org/debian stretch/main amd64 openjdk-8-jre amd64 8u252-b09-1~deb9u1 [69.8 kB] Get:330 http://deb.debian.org/debian stretch/main amd64 default-jre amd64 2:1.8-58+deb9u1 [930 B] Get:331 http://deb.debian.org/debian stretch/main amd64 libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get:332 http://deb.debian.org/debian stretch/main amd64 libcommons-pool-java all 1.6-3 [104 kB] Get:333 http://deb.debian.org/debian stretch/main amd64 libcommons-collections3-java all 3.2.2-1 [599 kB] Get:334 http://deb.debian.org/debian stretch/main amd64 libcommons-dbcp-java all 1.4-5 [155 kB] Get:335 http://deb.debian.org/debian stretch/main amd64 libservlet3.1-java all 8.5.54-0+deb9u1 [403 kB] Get:336 http://deb.debian.org/debian stretch/main amd64 libhsqldb-java all 2.3.4-1 [1502 kB] Get:337 http://deb.debian.org/debian stretch/main amd64 libbiojava1.7-java all 1:1.7.1-5 [3160 kB] Get:338 http://deb.debian.org/debian stretch/main amd64 libbiojava-java all 1:1.7.1-5 [48.4 kB] Get:339 http://deb.debian.org/debian stretch/main amd64 libcommons-cli-java all 1.3.1-3 [55.2 kB] Get:340 http://deb.debian.org/debian stretch/main amd64 alien-hunter all 1.7-5 [28.4 kB] Get:341 http://deb.debian.org/debian stretch/main amd64 alter-sequence-alignment amd64 1.3.3+dfsg-1 [223 kB] Get:342 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:343 http://deb.debian.org/debian stretch/main amd64 libatlas3-base amd64 3.10.3-1+b1 [3048 kB] Get:344 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:345 http://deb.debian.org/debian stretch/main amd64 libopenblas-base amd64 0.2.19-3 [3793 kB] Get:346 http://deb.debian.org/debian stretch/main amd64 libtamuanova-0.2 amd64 0.2-4 [7610 B] Get:347 http://deb.debian.org/debian stretch/main amd64 libmath-tamuanova-perl amd64 1.0.2-2+b4 [13.5 kB] Get:348 http://deb.debian.org/debian stretch/main amd64 altree amd64 1.3.1-4+b2 [338 kB] Get:349 http://deb.debian.org/debian stretch/main amd64 amap-align amd64 2.2-6 [129 kB] Get:350 http://deb.debian.org/debian stretch/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:351 http://deb.debian.org/debian stretch/main amd64 andi amd64 0.10-2 [466 kB] Get:352 http://deb.debian.org/debian stretch/main amd64 libelf1 amd64 0.168-1 [157 kB] Get:353 http://deb.debian.org/debian stretch/main amd64 libelk0 amd64 3.99.8-4.1+b1 [166 kB] Get:354 http://deb.debian.org/debian stretch/main amd64 libprotobuf10 amd64 3.0.0-9 [681 kB] Get:355 http://deb.debian.org/debian stretch/main amd64 libanfo0 amd64 0.98-5 [272 kB] Get:356 http://deb.debian.org/debian stretch/main amd64 anfo amd64 0.98-5 [116 kB] Get:357 http://deb.debian.org/debian stretch/main amd64 ant all 1.9.9-1+deb9u1 [1923 kB] Get:358 http://deb.debian.org/debian stretch/main amd64 ant-optional all 1.9.9-1+deb9u1 [350 kB] Get:359 http://deb.debian.org/debian stretch/main amd64 libmaloc1 amd64 0.2-3.1 [49.3 kB] Get:360 http://deb.debian.org/debian stretch/main amd64 apbs amd64 1.4-1+b1 [218 kB] Get:361 http://deb.debian.org/debian stretch/main amd64 aragorn amd64 1.2.38-1 [86.0 kB] Get:362 http://deb.debian.org/debian stretch/main amd64 python-decorator all 4.0.11-1 [13.3 kB] Get:363 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:364 http://deb.debian.org/debian stretch/main amd64 python-numpy amd64 1:1.12.1-3 [1936 kB] Get:365 http://deb.debian.org/debian stretch/main amd64 python-scipy amd64 0.18.1-2 [8933 kB] Get:366 http://deb.debian.org/debian stretch/main amd64 python-htseq amd64 0.6.1p1-4 [188 kB] Get:367 http://deb.debian.org/debian stretch/main amd64 python-six all 1.10.0-3 [14.4 kB] Get:368 http://deb.debian.org/debian stretch/main amd64 python-dateutil all 2.5.3-2 [51.3 kB] Get:369 http://deb.debian.org/debian stretch/main amd64 fonts-lyx all 2.2.2-1 [197 kB] Get:370 http://deb.debian.org/debian stretch/main amd64 python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB] Get:371 http://deb.debian.org/debian stretch/main amd64 python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB] Get:372 http://deb.debian.org/debian stretch/main amd64 python-tz all 2016.7-0.3 [33.7 kB] Get:373 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB] Get:374 http://deb.debian.org/debian stretch/main amd64 python-cycler all 0.10.0-1 [7448 B] Get:375 http://deb.debian.org/debian stretch/main amd64 python-functools32 all 3.2.3.2-3 [11.0 kB] Get:376 http://deb.debian.org/debian stretch/main amd64 python-subprocess32 amd64 3.2.7-2 [28.9 kB] Get:377 http://deb.debian.org/debian stretch/main amd64 python-matplotlib amd64 2.0.0+dfsg1-2 [1598 kB] Get:378 http://deb.debian.org/debian stretch/main amd64 arden all 1.0-3 [88.7 kB] Get:379 http://deb.debian.org/debian stretch/main amd64 python3-pkg-resources all 33.1.1-1 [137 kB] Get:380 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:381 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:382 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:383 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:384 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:385 http://deb.debian.org/debian stretch/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:386 http://deb.debian.org/debian stretch/main amd64 libhts1 amd64 1.3.2-2 [257 kB] Get:387 http://deb.debian.org/debian stretch/main amd64 samtools amd64 1.3.1-3 [254 kB] Get:388 http://deb.debian.org/debian stretch/main amd64 fastaq all 3.14.0-1 [46.6 kB] Get:389 http://deb.debian.org/debian stretch/main amd64 python3-dendropy all 4.2.0+dfsg-1 [7494 kB] Get:390 http://deb.debian.org/debian stretch/main amd64 python3-pymummer all 0.10.1-1 [8872 B] Get:391 http://deb.debian.org/debian stretch/main amd64 python3-pysam amd64 0.10.0+ds-2 [1299 kB] Get:392 http://deb.debian.org/debian stretch/main amd64 libfml0 amd64 0.1-2+b1 [68.7 kB] Get:393 http://deb.debian.org/debian stretch/main amd64 libminimap0 amd64 0.2-3+b1 [22.6 kB] Get:394 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:395 http://deb.debian.org/debian stretch/main amd64 libtbb2 amd64 4.3~20150611-2 [136 kB] Get:396 http://deb.debian.org/debian stretch/main amd64 bowtie2 amd64 2.3.0-2 [1166 kB] Get:397 http://deb.debian.org/debian stretch/main amd64 cd-hit amd64 4.6.6-2 [852 kB] Get:398 http://deb.debian.org/debian stretch/main amd64 libcapnp-0.5.3 amd64 0.5.3-2 [584 kB] Get:399 http://deb.debian.org/debian stretch/main amd64 mash amd64 1.1.1-2 [126 kB] Get:400 http://deb.debian.org/debian stretch/main amd64 ariba amd64 2.6.1+ds-1 [104 kB] Get:401 http://deb.debian.org/debian stretch/main amd64 art-nextgen-simulation-tools amd64 20160605+dfsg-2 [1757 kB] Get:402 http://deb.debian.org/debian stretch/main amd64 binfmt-support amd64 2.1.6-2 [59.5 kB] Get:403 http://deb.debian.org/debian stretch/main amd64 fastjar amd64 2:0.98-6+b1 [81.0 kB] Get:404 http://deb.debian.org/debian stretch/main amd64 jarwrapper all 0.59 [17.9 kB] Get:405 http://deb.debian.org/debian stretch/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:406 http://deb.debian.org/debian stretch/main amd64 libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:407 http://deb.debian.org/debian stretch/main amd64 libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:408 http://deb.debian.org/debian stretch/main amd64 mysql-common all 5.8+1.0.2 [5608 B] Get:409 http://deb.debian.org/debian stretch/main amd64 libmariadbclient18 amd64 10.1.45-0+deb9u1 [785 kB] Get:410 http://deb.debian.org/debian stretch/main amd64 libpq5 amd64 9.6.17-0+deb9u1 [137 kB] Get:411 http://deb.debian.org/debian stretch/main amd64 emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:412 http://deb.debian.org/debian stretch/main amd64 emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:413 http://deb.debian.org/debian stretch/main amd64 emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:414 http://deb.debian.org/debian stretch/main amd64 jemboss all 6.6.0+dfsg-6 [3796 kB] Get:415 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:416 http://deb.debian.org/debian stretch/main amd64 java-wrappers all 0.1.28 [10.7 kB] Get:417 http://deb.debian.org/debian stretch/main amd64 libapache-pom-java all 10-2 [3870 B] Get:418 http://deb.debian.org/debian stretch/main amd64 libbsf-java all 1:2.4.0-5 [72.2 kB] Get:419 http://deb.debian.org/debian stretch/main amd64 libcommons-parent-java all 39-3 [9350 B] Get:420 http://deb.debian.org/debian stretch/main amd64 libcommons-io-java all 2.5-1 [206 kB] Get:421 http://deb.debian.org/debian stretch/main amd64 libcommons-logging-java all 1.2-1 [62.1 kB] Get:422 http://deb.debian.org/debian stretch/main amd64 libjaxp1.3-java all 1.3.05-2 [450 kB] Get:423 http://deb.debian.org/debian stretch/main amd64 libxml-commons-resolver1.1-java all 1.2-7 [91.9 kB] Get:424 http://deb.debian.org/debian stretch/main amd64 libxml-commons-external-java all 1.4.01-2 [245 kB] Get:425 http://deb.debian.org/debian stretch/main amd64 libxerces2-java all 2.11.0-7 [1365 kB] Get:426 http://deb.debian.org/debian stretch/main amd64 libxalan2-java all 2.7.1-9 [3169 kB] Get:427 http://deb.debian.org/debian stretch/main amd64 libxmlgraphics-commons-java all 2.1-2 [590 kB] Get:428 http://deb.debian.org/debian stretch/main amd64 libbatik-java all 1.8-4+deb9u2 [2893 kB] Get:429 http://deb.debian.org/debian stretch/main amd64 libcommons-lang3-java all 3.5-1 [437 kB] Get:430 http://deb.debian.org/debian stretch/main amd64 libcommons-net-java all 3.5-1 [281 kB] Get:431 http://deb.debian.org/debian stretch/main amd64 libcommons-compress-java all 1.13-1 [430 kB] Get:432 http://deb.debian.org/debian stretch/main amd64 libcommons-jexl2-java all 2.1.1-3 [246 kB] Get:433 http://deb.debian.org/debian stretch/main amd64 libngs-sdk1 amd64 1.3.0-2 [51.2 kB] Get:434 http://deb.debian.org/debian stretch/main amd64 libngs-sdk-dev amd64 1.3.0-2 [92.4 kB] Get:435 http://deb.debian.org/debian stretch/main amd64 libngs-java amd64 1.3.0-2 [71.1 kB] Get:436 http://deb.debian.org/debian stretch/main amd64 libsnappy1v5 amd64 1.1.3-3 [51.0 kB] Get:437 http://deb.debian.org/debian stretch/main amd64 libsnappy-jni amd64 1.1.2.6-1 [6808 B] Get:438 http://deb.debian.org/debian stretch/main amd64 libsnappy-java all 1.1.2.6-1 [65.9 kB] Get:439 http://deb.debian.org/debian stretch/main amd64 libxz-java all 1.6-1 [128 kB] Get:440 http://deb.debian.org/debian stretch/main amd64 libhtsjdk-java all 2.8.1+dfsg-1 [1438 kB] Get:441 http://deb.debian.org/debian stretch/main amd64 libibatis-java all 2.3.4.726-6 [339 kB] Get:442 http://deb.debian.org/debian stretch/main amd64 libj2ssh-java all 0.2.9-4 [740 kB] Get:443 http://deb.debian.org/debian stretch/main amd64 liblog4j1.2-java all 1.2.17-7+deb9u1 [431 kB] Get:444 http://deb.debian.org/debian stretch/main amd64 libatinject-jsr330-api-java all 1.0+ds1-2 [22.7 kB] Get:445 http://deb.debian.org/debian stretch/main amd64 libjsr305-java all 0.1~+svn49-10 [26.5 kB] Get:446 http://deb.debian.org/debian stretch/main amd64 libguava-java all 19.0-1 [2028 kB] Get:447 http://deb.debian.org/debian stretch/main amd64 libpicard-java all 2.8.1+dfsg-1 [1190 kB] Get:448 http://deb.debian.org/debian stretch/main amd64 libpostgresql-jdbc-java all 9.4.1212-1 [629 kB] Get:449 http://deb.debian.org/debian stretch/main amd64 artemis all 16.0.17+dfsg-1 [2622 kB] Get:450 http://deb.debian.org/debian stretch/main amd64 artfastqgenerator all 0.0.20150519-2 [40.2 kB] Get:451 http://deb.debian.org/debian stretch/main amd64 at-spi2-core amd64 2.22.0-6+deb9u1 [69.3 kB] Get:452 http://deb.debian.org/debian stretch/main amd64 libfile-which-perl all 1.21-1 [14.3 kB] Get:453 http://deb.debian.org/debian stretch/main amd64 leaff amd64 0~20150903+r2013-3 [71.3 kB] Get:454 http://deb.debian.org/debian stretch/main amd64 meryl amd64 0~20150903+r2013-3 [194 kB] Get:455 http://deb.debian.org/debian stretch/main amd64 aglfn all 1.7-3 [29.2 kB] Get:456 http://deb.debian.org/debian stretch/main amd64 gnuplot-data all 5.0.5+dfsg1-6+deb9u1 [127 kB] Get:457 http://deb.debian.org/debian stretch/main amd64 libqt5printsupport5 amd64 5.7.1+dfsg-3+deb9u2 [199 kB] Get:458 http://deb.debian.org/debian stretch/main amd64 libwxbase3.0-0v5 amd64 3.0.2+dfsg-4 [1073 kB] Get:459 http://deb.debian.org/debian stretch/main amd64 libnotify4 amd64 0.7.7-2 [21.9 kB] Get:460 http://deb.debian.org/debian stretch/main amd64 libwxgtk3.0-0v5 amd64 3.0.2+dfsg-4 [4493 kB] Get:461 http://deb.debian.org/debian stretch/main amd64 gnuplot-qt amd64 5.0.5+dfsg1-6+deb9u1 [1038 kB] Get:462 http://deb.debian.org/debian stretch/main amd64 gnuplot all 5.0.5+dfsg1-6+deb9u1 [70.8 kB] Get:463 http://deb.debian.org/debian stretch/main amd64 atac amd64 0~20150903+r2013-3 [383 kB] Get:464 http://deb.debian.org/debian stretch/main amd64 libbamtools2.4.0 amd64 2.4.1+dfsg-1 [190 kB] Get:465 http://deb.debian.org/debian stretch/main amd64 augustus-data all 3.2.3+dfsg-1 [14.9 MB] Get:466 http://deb.debian.org/debian stretch/main amd64 augustus amd64 3.2.3+dfsg-1 [1110 kB] Get:467 http://deb.debian.org/debian stretch/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:468 http://deb.debian.org/debian stretch/main amd64 autoconf all 2.69-10 [338 kB] Get:469 http://deb.debian.org/debian stretch/main amd64 autodock amd64 4.2.6-3+b1 [160 kB] Get:470 http://deb.debian.org/debian stretch/main amd64 autogrid amd64 4.2.6-3+b1 [48.3 kB] Get:471 http://deb.debian.org/debian stretch/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:472 http://deb.debian.org/debian stretch/main amd64 automake all 1:1.15-6 [733 kB] Get:473 http://deb.debian.org/debian stretch/main amd64 autopoint all 0.19.8.1-2+deb9u1 [433 kB] Get:474 http://deb.debian.org/debian stretch/main amd64 libqes0 amd64 0.2.7-1 [15.0 kB] Get:475 http://deb.debian.org/debian stretch/main amd64 axe-demultiplexer amd64 0.3.2+dfsg1-1 [213 kB] Get:476 http://deb.debian.org/debian stretch/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-4 [36.0 kB] Get:477 http://deb.debian.org/debian stretch/main amd64 libboost-date-time1.62.0 amd64 1.62.0+dfsg-4 [42.9 kB] Get:478 http://deb.debian.org/debian stretch/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-4 [125 kB] Get:479 http://deb.debian.org/debian stretch/main amd64 libfftw3-single3 amd64 3.3.5-3 [776 kB] Get:480 http://deb.debian.org/debian stretch/main amd64 libpython2.7 amd64 2.7.13-2+deb9u3 [1071 kB] Get:481 http://deb.debian.org/debian stretch/main amd64 qtcore4-l10n all 4:4.8.7+dfsg-11 [662 kB] Get:482 http://deb.debian.org/debian stretch/main amd64 libqtcore4 amd64 4:4.8.7+dfsg-11 [1598 kB] Get:483 http://deb.debian.org/debian stretch/main amd64 libqt4-xml amd64 4:4.8.7+dfsg-11 [143 kB] Get:484 http://deb.debian.org/debian stretch/main amd64 libqtdbus4 amd64 4:4.8.7+dfsg-11 [232 kB] Get:485 http://deb.debian.org/debian stretch/main amd64 libqt4-network amd64 4:4.8.7+dfsg-11 [606 kB] Get:486 http://deb.debian.org/debian stretch/main amd64 libqt4-sql amd64 4:4.8.7+dfsg-11 [145 kB] Get:487 http://deb.debian.org/debian stretch/main amd64 libball1.4-data all 1.4.3~beta1-3 [28.7 MB] Get:488 http://deb.debian.org/debian stretch/main amd64 libball1.4 amd64 1.4.3~beta1-3 [3236 kB] Get:489 http://deb.debian.org/debian stretch/main amd64 libglew2.0 amd64 2.0.0-3+b1 [143 kB] Get:490 http://deb.debian.org/debian stretch/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:491 http://deb.debian.org/debian stretch/main amd64 libmng1 amd64 1.0.10+dfsg-3.1+b5 [211 kB] Get:492 http://deb.debian.org/debian stretch/main amd64 libqtgui4 amd64 4:4.8.7+dfsg-11 [4150 kB] Get:493 http://deb.debian.org/debian stretch/main amd64 libqt4-opengl amd64 4:4.8.7+dfsg-11 [346 kB] Get:494 http://deb.debian.org/debian stretch/main amd64 libqt4-test amd64 4:4.8.7+dfsg-11 [107 kB] Get:495 http://deb.debian.org/debian stretch/main amd64 libcap2-bin amd64 1:2.25-1 [26.5 kB] Get:496 http://deb.debian.org/debian stretch/main amd64 libgstreamer1.0-0 amd64 1.10.4-1 [1962 kB] Get:497 http://deb.debian.org/debian stretch/main amd64 liborc-0.4-0 amd64 1:0.4.26-2 [140 kB] Get:498 http://deb.debian.org/debian stretch/main amd64 iso-codes all 3.75-1 [2389 kB] Get:499 http://deb.debian.org/debian stretch/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.10.4-1+deb9u1 [1646 kB] Get:500 http://deb.debian.org/debian stretch/main amd64 libqt4-xmlpatterns amd64 4:4.8.7+dfsg-11 [1138 kB] Get:501 http://deb.debian.org/debian stretch/main amd64 libqtwebkit4 amd64 2.3.4.dfsg-9.1 [8882 kB] Get:502 http://deb.debian.org/debian stretch/main amd64 libballview1.4 amd64 1.4.3~beta1-3 [1440 kB] Get:503 http://deb.debian.org/debian stretch/main amd64 python-ball amd64 1.4.3~beta1-3 [886 kB] Get:504 http://deb.debian.org/debian stretch/main amd64 python-ballview amd64 1.4.3~beta1-3 [226 kB] Get:505 http://deb.debian.org/debian stretch/main amd64 ballview amd64 1.4.3~beta1-3 [2518 kB] Get:506 http://deb.debian.org/debian stretch/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:507 http://deb.debian.org/debian stretch/main amd64 bamtools amd64 2.4.1+dfsg-1 [214 kB] Get:508 http://deb.debian.org/debian stretch/main amd64 hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:509 http://deb.debian.org/debian stretch/main amd64 barrnap all 0.7+dfsg-2 [192 kB] Get:510 http://deb.debian.org/debian stretch/main amd64 bc amd64 1.06.95-9+b3 [105 kB] Get:511 http://deb.debian.org/debian stretch/main amd64 bcftools amd64 1.3.1-1+b1 [335 kB] Get:512 http://deb.debian.org/debian stretch/main amd64 beagle all 4.1~160727-86a+dfsg-1 [361 kB] Get:513 http://deb.debian.org/debian stretch/main amd64 libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:514 http://deb.debian.org/debian stretch/main amd64 beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:515 http://deb.debian.org/debian stretch/main amd64 libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:516 http://deb.debian.org/debian stretch/main amd64 libhmsbeagle-java amd64 2.1.2+20160831-5 [24.2 kB] Get:517 http://deb.debian.org/debian stretch/main amd64 libhamcrest-java all 1.3-6 [378 kB] Get:518 http://deb.debian.org/debian stretch/main amd64 junit4 all 4.12-4 [286 kB] Get:519 http://deb.debian.org/debian stretch/main amd64 libconcurrent-java all 1.3.4-4 [133 kB] Get:520 http://deb.debian.org/debian stretch/main amd64 libcolt-free-java all 1.2.0+dfsg-4 [405 kB] Get:521 http://deb.debian.org/debian stretch/main amd64 libcommons-math-java all 2.2-6 [892 kB] Get:522 http://deb.debian.org/debian stretch/main amd64 libitext1-java all 1.4-6 [1194 kB] Get:523 http://deb.debian.org/debian stretch/main amd64 libjam-java all 0.1.20140824-2 [159 kB] Get:524 http://deb.debian.org/debian stretch/main amd64 libjaxen-java all 1.1.6-1+deb9u1 [205 kB] Get:525 http://deb.debian.org/debian stretch/main amd64 libjdom1-java all 1.1.3-1 [150 kB] Get:526 http://deb.debian.org/debian stretch/main amd64 libjebl2-java all 0.1+20140614-1 [496 kB] Get:527 http://deb.debian.org/debian stretch/main amd64 libcommons-codec-java all 1.10-1 [234 kB] Get:528 http://deb.debian.org/debian stretch/main amd64 libmpj-java all 0.44+dfsg-3 [439 kB] Get:529 http://deb.debian.org/debian stretch/main amd64 libmtj-java all 0.9.14+dfsg-4 [126 kB] Get:530 http://deb.debian.org/debian stretch/main amd64 libnucleotidelikelihoodcore0 amd64 1.8.4+dfsg.1-1 [8460 B] Get:531 http://deb.debian.org/debian stretch/main amd64 f2j amd64 0.8.1+dfsg-2 [160 kB] Get:532 http://deb.debian.org/debian stretch/main amd64 libf2j-java all 0.8.1+dfsg-2 [59.0 kB] Get:533 http://deb.debian.org/debian stretch/main amd64 libjlapack-java all 0.8~dfsg-3 [925 kB] Get:534 http://deb.debian.org/debian stretch/main amd64 libnetlib-java all 0.9.3-3 [192 kB] Get:535 http://deb.debian.org/debian stretch/main amd64 beast-mcmc all 1.8.4+dfsg.1-1 [7151 kB] Get:536 http://deb.debian.org/debian stretch/main amd64 beast2-mcmc all 2.4.4+dfsg-1 [1590 kB] Get:537 http://deb.debian.org/debian stretch/main amd64 bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:538 http://deb.debian.org/debian stretch/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4 [159 kB] Get:539 http://deb.debian.org/debian stretch/main amd64 berkeley-express amd64 1.5.1-3+b1 [234 kB] Get:540 http://deb.debian.org/debian stretch/main amd64 binutils amd64 2.28-5 [3770 kB] Get:541 http://deb.debian.org/debian stretch/main amd64 bio-eagle amd64 2.3-3 [219 kB] Get:542 http://deb.debian.org/debian stretch/main amd64 bio-rainbow amd64 2.0.4-1+b1 [48.3 kB] Get:543 http://deb.debian.org/debian stretch/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:544 http://deb.debian.org/debian stretch/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:545 http://deb.debian.org/debian stretch/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:546 http://deb.debian.org/debian stretch/main amd64 bioperl all 1.7.1-2 [422 kB] Get:547 http://deb.debian.org/debian stretch/main amd64 libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:548 http://deb.debian.org/debian stretch/main amd64 bioperl-run all 1.7.1-3 [44.2 kB] Get:549 http://deb.debian.org/debian stretch/main amd64 biosquid amd64 1.9g+cvs20050121-7 [188 kB] Get:550 http://deb.debian.org/debian stretch/main amd64 libaec0 amd64 0.3.2-1 [18.5 kB] Get:551 http://deb.debian.org/debian stretch/main amd64 libsz2 amd64 0.3.2-1 [5730 B] Get:552 http://deb.debian.org/debian stretch/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-3+deb9u1 [1282 kB] Get:553 http://deb.debian.org/debian stretch/main amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-3+deb9u1 [130 kB] Get:554 http://deb.debian.org/debian stretch/main amd64 libpbbam amd64 0.7.4+ds-1 [478 kB] Get:555 http://deb.debian.org/debian stretch/main amd64 libpbdata amd64 0~20161219-1 [129 kB] Get:556 http://deb.debian.org/debian stretch/main amd64 libpbihdf amd64 0~20161219-1 [167 kB] Get:557 http://deb.debian.org/debian stretch/main amd64 libblasr amd64 0~20161219-1 [867 kB] Get:558 http://deb.debian.org/debian stretch/main amd64 libpbseq all 0~20161219-1 [3876 B] Get:559 http://deb.debian.org/debian stretch/main amd64 blasr amd64 5.3+0-1 [691 kB] Get:560 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:561 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:562 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:563 http://deb.debian.org/debian stretch/main amd64 blast2 all 1:2.6.0-1 [9084 B] Get:564 http://deb.debian.org/debian stretch/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:565 http://deb.debian.org/debian stretch/main amd64 blends-common all 0.6.96 [23.3 kB] Get:566 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:567 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:568 http://deb.debian.org/debian stretch/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-3 [585 kB] Get:569 http://deb.debian.org/debian stretch/main amd64 blt amd64 2.5.3+dfsg-3 [14.6 kB] Get:570 http://deb.debian.org/debian stretch/main amd64 boxshade amd64 3.3.1-10 [54.4 kB] Get:571 http://deb.debian.org/debian stretch/main amd64 libcommons-lang-java all 2.6-6 [269 kB] Get:572 http://deb.debian.org/debian stretch/main amd64 libjargs-java all 1.0.0-4 [15.3 kB] Get:573 http://deb.debian.org/debian stretch/main amd64 cgview amd64 0.0.20100111-2 [586 kB] Get:574 http://deb.debian.org/debian stretch/main amd64 libswing-layout-java all 1.0.4-4 [51.3 kB] Get:575 http://deb.debian.org/debian stretch/main amd64 brig amd64 0.95+dfsg-1 [105 kB] Get:576 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:577 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:578 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:579 http://deb.debian.org/debian stretch/main amd64 libisl15 amd64 0.18-1 [564 kB] Get:580 http://deb.debian.org/debian stretch/main amd64 libmpc3 amd64 1.0.3-1+b2 [39.9 kB] Get:581 http://deb.debian.org/debian stretch/main amd64 cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:582 http://deb.debian.org/debian stretch/main amd64 cpp amd64 4:6.3.0-4 [18.7 kB] Get:583 http://deb.debian.org/debian stretch/main amd64 libcc1-0 amd64 6.3.0-18+deb9u1 [30.6 kB] Get:584 http://deb.debian.org/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:585 http://deb.debian.org/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:586 http://deb.debian.org/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:587 http://deb.debian.org/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:588 http://deb.debian.org/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:589 http://deb.debian.org/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:590 http://deb.debian.org/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:591 http://deb.debian.org/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:592 http://deb.debian.org/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:593 http://deb.debian.org/debian stretch/main amd64 gcc amd64 4:6.3.0-4 [5196 B] Get:594 http://deb.debian.org/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:595 http://deb.debian.org/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:596 http://deb.debian.org/debian stretch/main amd64 g++ amd64 4:6.3.0-4 [1546 B] Get:597 http://deb.debian.org/debian stretch/main amd64 libdpkg-perl all 1.18.25 [1287 kB] Get:598 http://deb.debian.org/debian stretch/main amd64 patch amd64 2.7.5-1+deb9u2 [112 kB] Get:599 http://deb.debian.org/debian stretch/main amd64 dpkg-dev all 1.18.25 [1595 kB] Get:600 http://deb.debian.org/debian stretch/main amd64 build-essential amd64 12.3 [7346 B] Get:601 http://deb.debian.org/debian stretch/main amd64 bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:602 http://deb.debian.org/debian stretch/main amd64 bzip2-doc all 1.0.6-8.1 [307 kB] Get:603 http://deb.debian.org/debian stretch/main amd64 libgflags2v5 amd64 2.1.2-4 [69.1 kB] Get:604 http://deb.debian.org/debian stretch/main amd64 libunwind8 amd64 1.1-4.1 [48.7 kB] Get:605 http://deb.debian.org/debian stretch/main amd64 libgoogle-glog0v5 amd64 0.3.4-2 [51.5 kB] Get:606 http://deb.debian.org/debian stretch/main amd64 libcassie1v5 amd64 1.0.5-1+b1 [38.2 kB] Get:607 http://deb.debian.org/debian stretch/main amd64 cassiopee amd64 1.0.5-1+b1 [13.7 kB] Get:608 http://deb.debian.org/debian stretch/main amd64 cdbfasta amd64 0.99-20100722-3 [55.5 kB] Get:609 http://deb.debian.org/debian stretch/main amd64 cdbs all 0.4.150 [82.6 kB] Get:610 http://deb.debian.org/debian stretch/main amd64 microbiomeutil-data all 20101212+dfsg1-1 [2242 kB] Get:611 http://deb.debian.org/debian stretch/main amd64 chimeraslayer all 20101212+dfsg1-1 [33.5 kB] Get:612 http://deb.debian.org/debian stretch/main amd64 python3-jdcal all 1.0-1.2~deb9u1 [7566 B] Get:613 http://deb.debian.org/debian stretch/main amd64 python3-lxml amd64 3.7.1-1 [900 kB] Get:614 http://deb.debian.org/debian stretch/main amd64 python3-openpyxl all 2.3.0-3 [198 kB] Get:615 http://deb.debian.org/debian stretch/main amd64 prodigal amd64 1:2.6.3-1+b1 [714 kB] Get:616 http://deb.debian.org/debian stretch/main amd64 libhat-trie0 amd64 0.0~git25f9e946-2 [10.7 kB] Get:617 http://deb.debian.org/debian stretch/main amd64 libjemalloc1 amd64 3.6.0-9.1 [89.8 kB] Get:618 http://deb.debian.org/debian stretch/main amd64 libnlopt0 amd64 2.4.2+dfsg-2+b2 [162 kB] Get:619 http://deb.debian.org/debian stretch/main amd64 libssw0 amd64 1.1-1+b1 [16.5 kB] Get:620 http://deb.debian.org/debian stretch/main amd64 python-joblib all 0.10.3+git55-g660fe5d-1 [115 kB] Get:621 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:622 http://deb.debian.org/debian stretch/main amd64 python-yaml amd64 3.12-1 [119 kB] Get:623 http://deb.debian.org/debian stretch/main amd64 spades amd64 3.9.1+dfsg-1 [3450 kB] Get:624 http://deb.debian.org/debian stretch/main amd64 circlator all 1.4.1-1 [4325 kB] Get:625 http://deb.debian.org/debian stretch/main amd64 fonts-circos-symbols all 0.69.4+dfsg-1 [45.8 kB] Get:626 http://deb.debian.org/debian stretch/main amd64 fonts-cmu all 0.7.0-3 [4874 kB] Get:627 http://deb.debian.org/debian stretch/main amd64 libregexp-common-perl all 2016060801-1 [178 kB] Get:628 http://deb.debian.org/debian stretch/main amd64 libcarp-always-perl all 0.12-1 [9142 B] Get:629 http://deb.debian.org/debian stretch/main amd64 libconfig-general-perl all 2.63-1 [70.5 kB] Get:630 http://deb.debian.org/debian stretch/main amd64 libdata-dumper-simple-perl all 0.11-5 [12.9 kB] Get:631 http://deb.debian.org/debian stretch/main amd64 libgd-perl amd64 2.53-3 [177 kB] Get:632 http://deb.debian.org/debian stretch/main amd64 libgetopt-simple-perl all 1.52-5 [14.4 kB] Get:633 http://deb.debian.org/debian stretch/main amd64 libmath-bezier-perl all 0.01-2 [6910 B] Get:634 http://deb.debian.org/debian stretch/main amd64 libmath-round-perl all 0.07-1 [10.6 kB] Get:635 http://deb.debian.org/debian stretch/main amd64 libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:636 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:637 http://deb.debian.org/debian stretch/main amd64 libtry-tiny-perl all 0.28-1 [22.7 kB] Get:638 http://deb.debian.org/debian stretch/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:639 http://deb.debian.org/debian stretch/main amd64 libparams-validate-perl amd64 1.26-1 [66.0 kB] Get:640 http://deb.debian.org/debian stretch/main amd64 libreadonly-perl all 2.050-1 [22.7 kB] Get:641 http://deb.debian.org/debian stretch/main amd64 libset-intspan-perl all 1.19-1 [26.7 kB] Get:642 http://deb.debian.org/debian stretch/main amd64 liblist-someutils-perl all 0.53-1 [42.0 kB] Get:643 http://deb.debian.org/debian stretch/main amd64 liblist-utilsby-perl all 0.10-1 [14.3 kB] Get:644 http://deb.debian.org/debian stretch/main amd64 libscalar-list-utils-perl amd64 1:1.47-1 [54.4 kB] Get:645 http://deb.debian.org/debian stretch/main amd64 liblist-allutils-perl all 0.12-1 [31.9 kB] Get:646 http://deb.debian.org/debian stretch/main amd64 libipc-system-simple-perl all 1.25-3 [26.9 kB] Get:647 http://deb.debian.org/debian stretch/main amd64 libfile-basedir-perl all 0.07-1 [17.5 kB] Get:648 http://deb.debian.org/debian stretch/main amd64 libmath-vec-perl all 1.01-3 [17.8 kB] Get:649 http://deb.debian.org/debian stretch/main amd64 libspiffy-perl all 0.41-1 [26.1 kB] Get:650 http://deb.debian.org/debian stretch/main amd64 libio-all-perl all 0.86-2 [73.4 kB] Get:651 http://deb.debian.org/debian stretch/main amd64 libmath-vecstat-perl all 0.08-1 [9148 B] Get:652 http://deb.debian.org/debian stretch/main amd64 libgraphics-colornames-perl all 2.11-7.1 [37.9 kB] Get:653 http://deb.debian.org/debian stretch/main amd64 libgraphics-colorobject-perl all 0.5.0-7.1 [28.2 kB] Get:654 http://deb.debian.org/debian stretch/main amd64 libtext-format-perl all 0.60-1 [20.0 kB] Get:655 http://deb.debian.org/debian stretch/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:656 http://deb.debian.org/debian stretch/main amd64 libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:657 http://deb.debian.org/debian stretch/main amd64 libnumber-format-perl all 1.75-1 [30.0 kB] Get:658 http://deb.debian.org/debian stretch/main amd64 libstatistics-basic-perl all 1.6611-1 [70.4 kB] Get:659 http://deb.debian.org/debian stretch/main amd64 circos all 0.69.4+dfsg-1 [19.8 MB] Get:660 http://deb.debian.org/debian stretch/main amd64 circos-tools all 0.22-1 [18.7 MB] Get:661 http://deb.debian.org/debian stretch/main amd64 clearcut amd64 1.0.9-1+b1 [283 kB] Get:662 http://deb.debian.org/debian stretch/main amd64 clonalframe amd64 1.2-5 [49.2 kB] Get:663 http://deb.debian.org/debian stretch/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:664 http://deb.debian.org/debian stretch/main amd64 clustalo amd64 1.2.4-1 [263 kB] Get:665 http://deb.debian.org/debian stretch/main amd64 clustalw amd64 2.1+lgpl-5 [286 kB] Get:666 http://deb.debian.org/debian stretch/main amd64 clustalx amd64 2.1+lgpl-5 [455 kB] Get:667 http://deb.debian.org/debian stretch/main amd64 codonw amd64 1.4.4-3+b1 [90.9 kB] Get:668 http://deb.debian.org/debian stretch/main amd64 libgkarrays1 amd64 2.1.0+dfsg-1 [55.0 kB] Get:669 http://deb.debian.org/debian stretch/main amd64 libgzstream0 amd64 1.5+dfsg-2 [6258 B] Get:670 http://deb.debian.org/debian stretch/main amd64 libjellyfish-2.0-2 amd64 2.2.6-1+b1 [62.2 kB] Get:671 http://deb.debian.org/debian stretch/main amd64 crac amd64 2.5.0+dfsg-1 [254 kB] Get:672 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:673 http://deb.debian.org/debian stretch/main amd64 curl amd64 7.52.1-5+deb9u10 [227 kB] Get:674 http://deb.debian.org/debian stretch/main amd64 python3-xopen all 0.1.1-1 [6072 B] Get:675 http://deb.debian.org/debian stretch/main amd64 python3-cutadapt amd64 1.12-2 [106 kB] Get:676 http://deb.debian.org/debian stretch/main amd64 cutadapt all 1.12-2 [7448 B] Get:677 http://deb.debian.org/debian stretch/main amd64 cython amd64 0.25.2-1 [1863 kB] Get:678 http://deb.debian.org/debian stretch/main amd64 daligner amd64 1.0+20161119-1 [170 kB] Get:679 http://deb.debian.org/debian stretch/main amd64 dascrubber amd64 0~20160601-2 [81.6 kB] Get:680 http://deb.debian.org/debian stretch/main amd64 dawg amd64 1.2-1+b1 [76.9 kB] Get:681 http://deb.debian.org/debian stretch/main amd64 dazzdb amd64 1.0+20161112-2 [150 kB] Get:682 http://deb.debian.org/debian stretch/main amd64 libmatthew-debug-java all 0.8-1 [13.4 kB] Get:683 http://deb.debian.org/debian stretch/main amd64 libunixsocket-java amd64 0.8-1 [15.7 kB] Get:684 http://deb.debian.org/debian stretch/main amd64 libdbus-java all 2.8-6 [150 kB] Get:685 http://deb.debian.org/debian stretch/main amd64 dbus-java-bin all 2.8-6 [74.5 kB] Get:686 http://deb.debian.org/debian stretch/main amd64 libtool all 2.4.6-2 [545 kB] Get:687 http://deb.debian.org/debian stretch/main amd64 dh-autoreconf all 14 [15.9 kB] Get:688 http://deb.debian.org/debian stretch/main amd64 libarchive-zip-perl all 1.59-1+deb9u1 [96.2 kB] Get:689 http://deb.debian.org/debian stretch/main amd64 libfile-stripnondeterminism-perl all 0.034-1 [16.4 kB] Get:690 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:691 http://deb.debian.org/debian stretch/main amd64 dh-strip-nondeterminism all 0.034-1 [10.5 kB] Get:692 http://deb.debian.org/debian stretch/main amd64 gettext amd64 0.19.8.1-2+deb9u1 [1496 kB] Get:693 http://deb.debian.org/debian stretch/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:694 http://deb.debian.org/debian stretch/main amd64 po-debconf all 1.0.20 [247 kB] Get:695 http://deb.debian.org/debian stretch/main amd64 debhelper all 10.2.5 [961 kB] Get:696 http://deb.debian.org/debian stretch/main amd64 dialign amd64 2.2.1-8 [138 kB] Get:697 http://deb.debian.org/debian stretch/main amd64 dialign-tx-data all 1.0.2-9 [869 kB] Get:698 http://deb.debian.org/debian stretch/main amd64 dialign-tx amd64 1.0.2-9 [85.7 kB] Get:699 http://deb.debian.org/debian stretch/main amd64 dindel amd64 1.01+dfsg-4+b1 [333 kB] Get:700 http://deb.debian.org/debian stretch/main amd64 dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:701 http://deb.debian.org/debian stretch/main amd64 discosnp amd64 1.2.6-1+b2 [143 kB] Get:702 http://deb.debian.org/debian stretch/main amd64 dnaclust amd64 3-4+b2 [85.9 kB] Get:703 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:704 http://deb.debian.org/debian stretch/main amd64 docutils-common all 0.13.1+dfsg-2 [200 kB] Get:705 http://deb.debian.org/debian stretch/main amd64 docutils-doc all 0.13.1+dfsg-2 [913 kB] Get:706 http://deb.debian.org/debian stretch/main amd64 dssp amd64 2.2.1-3+b2 [265 kB] Get:707 http://deb.debian.org/debian stretch/main amd64 libkpathsea6 amd64 2016.20160513.41080.dfsg-2+deb9u1 [160 kB] Get:708 http://deb.debian.org/debian stretch/main amd64 libptexenc1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [58.0 kB] Get:709 http://deb.debian.org/debian stretch/main amd64 libsynctex1 amd64 2016.20160513.41080.dfsg-2+deb9u1 [64.9 kB] Get:710 http://deb.debian.org/debian stretch/main amd64 libtexlua52 amd64 2016.20160513.41080.dfsg-2+deb9u1 [111 kB] Get:711 http://deb.debian.org/debian stretch/main amd64 libtexluajit2 amd64 2016.20160513.41080.dfsg-2+deb9u1 [250 kB] Get:712 http://deb.debian.org/debian stretch/main amd64 t1utils amd64 1.39-2 [59.0 kB] Get:713 http://deb.debian.org/debian stretch/main amd64 libcupsimage2 amd64 2.2.1-8+deb9u6 [122 kB] Get:714 http://deb.debian.org/debian stretch/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:715 http://deb.debian.org/debian stretch/main amd64 libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:716 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:717 http://deb.debian.org/debian stretch/main amd64 libgs9-common all 9.26a~dfsg-0+deb9u6 [5143 kB] Get:718 http://deb.debian.org/debian stretch/main amd64 libgs9 amd64 9.26a~dfsg-0+deb9u6 [2213 kB] Get:719 http://deb.debian.org/debian stretch/main amd64 libharfbuzz-icu0 amd64 1.4.2-1 [466 kB] Get:720 http://deb.debian.org/debian stretch/main amd64 libpoppler64 amd64 0.48.0-2+deb9u2 [1287 kB] Get:721 http://deb.debian.org/debian stretch/main amd64 libpotrace0 amd64 1.13-3 [24.9 kB] Get:722 http://deb.debian.org/debian stretch/main amd64 libzzip-0-13 amd64 0.13.62-3.2~deb9u1 [56.1 kB] Get:723 http://deb.debian.org/debian stretch/main amd64 tex-common all 6.06 [566 kB] Get:724 http://deb.debian.org/debian stretch/main amd64 texlive-binaries amd64 2016.20160513.41080.dfsg-2+deb9u1 [7404 kB] Get:725 http://deb.debian.org/debian stretch/main amd64 ghostscript amd64 9.26a~dfsg-0+deb9u6 [99.2 kB] Get:726 http://deb.debian.org/debian stretch/main amd64 dvipng amd64 1.14-2+b3 [86.5 kB] Get:727 http://deb.debian.org/debian stretch/main amd64 dwgsim amd64 0.1.11-3+b1 [38.1 kB] Get:728 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:729 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:730 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:731 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:732 http://deb.debian.org/debian stretch/main amd64 r-cran-getopt amd64 1.20.0-2 [24.4 kB] Get:733 http://deb.debian.org/debian stretch/main amd64 r-cran-chron amd64 2.3-49-1 [104 kB] Get:734 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:735 http://deb.debian.org/debian stretch/main amd64 r-cran-cluster amd64 2.0.5-1 [490 kB] Get:736 http://deb.debian.org/debian stretch/main amd64 r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:737 http://deb.debian.org/debian stretch/main amd64 r-cran-survival amd64 2.40-1-1 [4863 kB] Get:738 http://deb.debian.org/debian stretch/main amd64 r-cran-formula all 1.2-1-1 [162 kB] Get:739 http://deb.debian.org/debian stretch/main amd64 r-cran-rpart amd64 4.1-10-2 [861 kB] Get:740 http://deb.debian.org/debian stretch/main amd64 r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:741 http://deb.debian.org/debian stretch/main amd64 r-cran-latticeextra amd64 0.6-28-2 [2059 kB] Get:742 http://deb.debian.org/debian stretch/main amd64 r-cran-acepack amd64 1.4.1-1 [52.5 kB] Get:743 http://deb.debian.org/debian stretch/main amd64 r-cran-digest amd64 0.6.11-1 [112 kB] Get:744 http://deb.debian.org/debian stretch/main amd64 r-cran-gtable all 0.2.0-1 [65.1 kB] Get:745 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:746 http://deb.debian.org/debian stretch/main amd64 r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:747 http://deb.debian.org/debian stretch/main amd64 littler all 0.3.1-1 [11.7 kB] Get:748 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:749 http://deb.debian.org/debian stretch/main amd64 r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:750 http://deb.debian.org/debian stretch/main amd64 r-cran-plyr amd64 1.8.4-1 [727 kB] Get:751 http://deb.debian.org/debian stretch/main amd64 r-cran-stringi amd64 1.1.2-1 [606 kB] Get:752 http://deb.debian.org/debian stretch/main amd64 r-cran-magrittr amd64 1.5-3 [147 kB] Get:753 http://deb.debian.org/debian stretch/main amd64 r-cran-stringr all 1.1.0-1 [117 kB] Get:754 http://deb.debian.org/debian stretch/main amd64 r-cran-reshape2 amd64 1.4.2-1 [87.5 kB] Get:755 http://deb.debian.org/debian stretch/main amd64 r-cran-dichromat all 2.0.0-3 [146 kB] Get:756 http://deb.debian.org/debian stretch/main amd64 r-cran-colorspace amd64 1.3-2-1 [388 kB] Get:757 http://deb.debian.org/debian stretch/main amd64 r-cran-munsell all 0.4.3-1 [127 kB] Get:758 http://deb.debian.org/debian stretch/main amd64 r-cran-labeling all 0.3-1 [39.9 kB] Get:759 http://deb.debian.org/debian stretch/main amd64 r-cran-scales amd64 0.4.1-1 [200 kB] Get:760 http://deb.debian.org/debian stretch/main amd64 r-cran-assertthat all 0.1-1 [43.3 kB] Get:761 http://deb.debian.org/debian stretch/main amd64 r-cran-lazyeval amd64 0.2.0-1 [112 kB] Get:762 http://deb.debian.org/debian stretch/main amd64 r-cran-tibble amd64 1.2-1 [121 kB] Get:763 http://deb.debian.org/debian stretch/main amd64 r-cran-ggplot2 all 2.2.1-2 [2658 kB] Get:764 http://deb.debian.org/debian stretch/main amd64 r-cran-gridextra all 2.2.1-1 [451 kB] Get:765 http://deb.debian.org/debian stretch/main amd64 r-cran-data.table amd64 1.10.0-1 [1070 kB] Get:766 http://deb.debian.org/debian stretch/main amd64 r-cran-htmltools amd64 0.3.5-2 [115 kB] Get:767 http://deb.debian.org/debian stretch/main amd64 r-cran-evaluate all 0.10-1 [51.5 kB] Get:768 http://deb.debian.org/debian stretch/main amd64 libjs-highlight.js all 8.2+ds-5 [165 kB] Get:769 http://deb.debian.org/debian stretch/main amd64 r-cran-highr all 0.6-1 [30.1 kB] Get:770 http://deb.debian.org/debian stretch/main amd64 fonts-mathjax all 2.7.0-2 [960 kB] Get:771 http://deb.debian.org/debian stretch/main amd64 libjs-mathjax all 2.7.0-2 [5603 kB] Get:772 http://deb.debian.org/debian stretch/main amd64 r-cran-mime amd64 0.5-1 [25.5 kB] Get:773 http://deb.debian.org/debian stretch/main amd64 r-cran-markdown amd64 0.7.7-1 [95.2 kB] Get:774 http://deb.debian.org/debian stretch/main amd64 r-cran-yaml amd64 2.1.14-1 [79.4 kB] Get:775 http://deb.debian.org/debian stretch/main amd64 r-cran-knitr amd64 1.15.1-1 [784 kB] Get:776 http://deb.debian.org/debian stretch/main amd64 r-cran-viridis all 0.3.4-1 [1723 kB] Get:777 http://deb.debian.org/debian stretch/main amd64 r-cran-htmltable all 1.7-2 [153 kB] Get:778 http://deb.debian.org/debian stretch/main amd64 r-cran-base64enc amd64 0.1-3-1 [23.4 kB] Get:779 http://deb.debian.org/debian stretch/main amd64 r-cran-hmisc amd64 4.0-2-1 [1745 kB] Get:780 http://deb.debian.org/debian stretch/main amd64 ea-utils amd64 1.1.2+dfsg-4 [229 kB] Get:781 http://deb.debian.org/debian stretch/main amd64 python3-reportlab-accel amd64 3.3.0-2+deb9u1 [32.1 kB] Get:782 http://deb.debian.org/debian stretch/main amd64 python3-reportlab all 3.3.0-2+deb9u1 [474 kB] Get:783 http://deb.debian.org/debian stretch/main amd64 ecopcr amd64 0.5.0+dfsg-1 [52.5 kB] Get:784 http://deb.debian.org/debian stretch/main amd64 libtmglib3 amd64 3.7.0-2 [130 kB] Get:785 http://deb.debian.org/debian stretch/main amd64 liblapacke amd64 3.7.0-2 [360 kB] Get:786 http://deb.debian.org/debian stretch/main amd64 eigensoft amd64 6.1.4+dfsg-1+b1 [341 kB] Get:787 http://deb.debian.org/debian stretch/main amd64 embassy-domainatrix amd64 0.1.660-1 [61.7 kB] Get:788 http://deb.debian.org/debian stretch/main amd64 embassy-domalign amd64 0.1.660-1 [66.7 kB] Get:789 http://deb.debian.org/debian stretch/main amd64 embassy-domsearch amd64 1:0.1.660-1 [60.6 kB] Get:790 http://deb.debian.org/debian stretch/main amd64 exim4-config all 4.89-2+deb9u7 [377 kB] Get:791 http://deb.debian.org/debian stretch/main amd64 exim4-base amd64 4.89-2+deb9u7 [1094 kB] Get:792 http://deb.debian.org/debian stretch/main amd64 exim4-daemon-light amd64 4.89-2+deb9u7 [542 kB] Get:793 http://deb.debian.org/debian stretch/main amd64 exim4 all 4.89-2+deb9u7 [7860 B] Get:794 http://deb.debian.org/debian stretch/main amd64 exonerate amd64 2.4.0-2 [1476 kB] Get:795 http://deb.debian.org/debian stretch/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:796 http://deb.debian.org/debian stretch/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] Get:797 http://deb.debian.org/debian stretch/main amd64 python-pkg-resources all 33.1.1-1 [166 kB] Get:798 http://deb.debian.org/debian stretch/main amd64 python-networkx all 1.11-2 [822 kB] Get:799 http://deb.debian.org/debian stretch/main amd64 rsync amd64 3.1.2-1+deb9u2 [393 kB] Get:800 http://deb.debian.org/debian stretch/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get:801 http://deb.debian.org/debian stretch/main amd64 falcon amd64 1.8.6-1.1 [510 kB] Get:802 http://deb.debian.org/debian stretch/main amd64 libdisorder0 amd64 0.0.2-1 [3962 B] Get:803 http://deb.debian.org/debian stretch/main amd64 libfastahack0 amd64 0.0+20160702-1+b1 [22.1 kB] Get:804 http://deb.debian.org/debian stretch/main amd64 fastahack amd64 0.0+20160702-1+b1 [10.4 kB] Get:805 http://deb.debian.org/debian stretch/main amd64 fastdnaml amd64 1.2.2-11+b1 [60.5 kB] Get:806 http://deb.debian.org/debian stretch/main amd64 fastlink amd64 4.1P-fix100+dfsg-1+b1 [250 kB] Get:807 http://deb.debian.org/debian stretch/main amd64 fastml amd64 3.1-3 [991 kB] Get:808 http://deb.debian.org/debian stretch/main amd64 libcommons-math3-java all 3.6.1-2 [1941 kB] Get:809 http://deb.debian.org/debian stretch/main amd64 libjbzip2-java all 0.9.1-3 [39.9 kB] Get:810 http://deb.debian.org/debian stretch/main amd64 fastqc all 0.11.5+dfsg-6 [375 kB] Get:811 http://deb.debian.org/debian stretch/main amd64 r-mathlib amd64 3.3.3-1 [1567 kB] Get:812 http://deb.debian.org/debian stretch/main amd64 fastqtl amd64 2.184+dfsg-5 [200 kB] Get:813 http://deb.debian.org/debian stretch/main amd64 libgtextutils0v5 amd64 0.7-4 [19.0 kB] Get:814 http://deb.debian.org/debian stretch/main amd64 libgd-text-perl all 0.86-9 [41.4 kB] Get:815 http://deb.debian.org/debian stretch/main amd64 libgd-graph-perl all 1.48-2 [389 kB] Get:816 http://deb.debian.org/debian stretch/main amd64 libperlio-gzip-perl amd64 0.19-1+b2 [17.3 kB] Get:817 http://deb.debian.org/debian stretch/main amd64 fastx-toolkit amd64 0.0.14-3 [90.2 kB] Get:818 http://deb.debian.org/debian stretch/main amd64 junit all 3.8.2-8 [107 kB] Get:819 http://deb.debian.org/debian stretch/main amd64 libnb-org-openide-util-lookup-java all 8.1+dfsg1-5 [80.4 kB] Get:820 http://deb.debian.org/debian stretch/main amd64 libnb-org-openide-util-java all 8.1+dfsg1-5 [167 kB] Get:821 http://deb.debian.org/debian stretch/main amd64 libfreehep-util-java all 2.0.2-6 [46.8 kB] Get:822 http://deb.debian.org/debian stretch/main amd64 libfreehep-swing-java all 2.0.3-4 [188 kB] Get:823 http://deb.debian.org/debian stretch/main amd64 libfreehep-export-java all 2.1.1-3 [20.8 kB] Get:824 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphics2d-java all 2.1.1-5 [121 kB] Get:825 http://deb.debian.org/debian stretch/main amd64 libfreehep-io-java all 2.0.2-5 [59.6 kB] Get:826 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-java all 2.1.1-4 [170 kB] Get:827 http://deb.debian.org/debian stretch/main amd64 libtablelayout-java all 20090826-3 [44.5 kB] Get:828 http://deb.debian.org/debian stretch/main amd64 libjas-plotter-java all 2.2.6+dfsg1-3 [584 kB] Get:829 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-tests-java all 2.1.1+dfsg1-4 [99.9 kB] Get:830 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-emf-java all 2.1.1-emfplus+dfsg1-3 [183 kB] Get:831 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-pdf-java all 2.1.1+dfsg-2 [71.9 kB] Get:832 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-ps-java all 2.1.1-2 [46.5 kB] Get:833 http://deb.debian.org/debian stretch/main amd64 libfreehep-xml-java all 2.1.2+dfsg1-4 [131 kB] Get:834 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-svg-java all 2.1.1-4 [25.1 kB] Get:835 http://deb.debian.org/debian stretch/main amd64 libfreehep-graphicsio-swf-java all 2.1.1+dfsg-2 [155 kB] Get:836 http://deb.debian.org/debian stretch/main amd64 libitext5-java all 5.5.6-2 [2152 kB] Get:837 http://deb.debian.org/debian stretch/main amd64 figtree all 1.4.2+dfsg-2 [948 kB] Get:838 http://deb.debian.org/debian stretch/main amd64 filo amd64 1.1.0-3+b1 [46.3 kB] Get:839 http://deb.debian.org/debian stretch/main amd64 python-pysam amd64 0.10.0+ds-2 [1301 kB] Get:840 http://deb.debian.org/debian stretch/main amd64 fitgcp amd64 0.0.20150429-1 [12.3 kB] Get:841 http://deb.debian.org/debian stretch/main amd64 flexbar amd64 2.50-2+b1 [257 kB] Get:842 http://deb.debian.org/debian stretch/main amd64 fml-asm amd64 0.1-2+b1 [66.8 kB] Get:843 http://deb.debian.org/debian stretch/main amd64 fonts-cabin all 1.5-2 [139 kB] Get:844 http://deb.debian.org/debian stretch/main amd64 fonts-comfortaa all 2.003-1 [133 kB] Get:845 http://deb.debian.org/debian stretch/main amd64 fonts-croscore all 20161116-1 [2138 kB] Get:846 http://deb.debian.org/debian stretch/main amd64 fonts-crosextra-caladea all 20130214-1 [82.1 kB] Get:847 http://deb.debian.org/debian stretch/main amd64 fonts-crosextra-carlito all 20130920-1 [745 kB] Get:848 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-extra all 2.37-1 [1982 kB] Get:849 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu all 2.37-1 [32.3 kB] Get:850 http://deb.debian.org/debian stretch/main amd64 fonts-ebgaramond all 0.016-1 [475 kB] Get:851 http://deb.debian.org/debian stretch/main amd64 fonts-ebgaramond-extra all 0.016-1 [2157 kB] Get:852 http://deb.debian.org/debian stretch/main amd64 fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:853 http://deb.debian.org/debian stretch/main amd64 fonts-freefont-otf all 20120503-6 [3168 kB] Get:854 http://deb.debian.org/debian stretch/main amd64 fonts-freefont-ttf all 20120503-6 [4316 kB] Get:855 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-artemisia all 1.1-5 [259 kB] Get:856 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:857 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-didot all 1.1-6 [278 kB] Get:858 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:859 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-olga all 1.1-5 [33.2 kB] Get:860 http://deb.debian.org/debian stretch/main amd64 fonts-gfs-solomos all 1.1-5 [40.6 kB] Get:861 http://deb.debian.org/debian stretch/main amd64 fonts-junicode all 0.7.8-2 [643 kB] Get:862 http://deb.debian.org/debian stretch/main amd64 fonts-linuxlibertine all 5.3.0-2 [1713 kB] Get:863 http://deb.debian.org/debian stretch/main amd64 fonts-lmodern all 2.004.5-3 [4540 kB] Get:864 http://deb.debian.org/debian stretch/main amd64 fonts-lobster all 2.0-2 [39.5 kB] Get:865 http://deb.debian.org/debian stretch/main amd64 fonts-lobstertwo all 2.0-2 [94.0 kB] Get:866 http://deb.debian.org/debian stretch/main amd64 fonts-noto-hinted all 20161116-1 [5075 kB] Get:867 http://deb.debian.org/debian stretch/main amd64 fonts-noto-mono all 20161116-1 [79.2 kB] Get:868 http://deb.debian.org/debian stretch/main amd64 fonts-oflb-asana-math all 000.907-6 [245 kB] Get:869 http://deb.debian.org/debian stretch/main amd64 fonts-roboto-hinted all 2:0~20160106-2 [2922 kB] Get:870 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentium all 20081126:1.03-1 [251 kB] Get:871 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentium-basic all 1.1-7 [382 kB] Get:872 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentiumplus all 5.000-1 [2811 kB] Get:873 http://deb.debian.org/debian stretch/main amd64 fonts-sil-gentiumplus-compact all 5.000-2 [1522 kB] Get:874 http://deb.debian.org/debian stretch/main amd64 fonts-texgyre all 20160520-1 [8761 kB] Get:875 http://deb.debian.org/debian stretch/main amd64 libavalon-framework-java all 4.2.0-9 [70.6 kB] Get:876 http://deb.debian.org/debian stretch/main amd64 libfontbox-java all 1:1.8.12-1 [205 kB] Get:877 http://deb.debian.org/debian stretch/main amd64 libfop-java all 1:2.1-6 [9459 kB] Get:878 http://deb.debian.org/debian stretch/main amd64 fop all 1:2.1-6 [22.9 kB] Get:879 http://deb.debian.org/debian stretch/main amd64 freeglut3 amd64 2.8.1-3 [123 kB] Get:880 http://deb.debian.org/debian stretch/main amd64 fsa amd64 1.15.9+dfsg-3 [753 kB] Get:881 http://deb.debian.org/debian stretch/main amd64 libsdsl3 amd64 2.0.3-4 [194 kB] Get:882 http://deb.debian.org/debian stretch/main amd64 fsm-lite amd64 1.0-2 [86.4 kB] Get:883 http://deb.debian.org/debian stretch/main amd64 ttf-dejavu-core all 2.37-1 [32.1 kB] Get:884 http://deb.debian.org/debian stretch/main amd64 ttf-dejavu-extra all 2.37-1 [32.2 kB] Get:885 http://deb.debian.org/debian stretch/main amd64 ttf-dejavu all 2.37-1 [32.0 kB] Get:886 http://deb.debian.org/debian stretch/main amd64 libpangox-1.0-0 amd64 0.0.2-5+b2 [42.3 kB] Get:887 http://deb.debian.org/debian stretch/main amd64 libgtkglext1 amd64 1.2.0-4 [90.3 kB] Get:888 http://deb.debian.org/debian stretch/main amd64 gamgi amd64 0.17.1-1+b1 [734 kB] Get:889 http://deb.debian.org/debian stretch/main amd64 libncl1 amd64 2.1.18+dfsg-2+b1 [355 kB] Get:890 http://deb.debian.org/debian stretch/main amd64 garli amd64 2.1-1 [571 kB] Get:891 http://deb.debian.org/debian stretch/main amd64 garlic amd64 1.6-1.1+b2 [231 kB] Get:892 http://deb.debian.org/debian stretch/main amd64 python-reportlab-accel amd64 3.3.0-2+deb9u1 [36.8 kB] Get:893 http://deb.debian.org/debian stretch/main amd64 python-reportlab all 3.3.0-2+deb9u1 [478 kB] Get:894 http://deb.debian.org/debian stretch/main amd64 python-biopython amd64 1.68+dfsg-3 [1201 kB] Get:895 http://deb.debian.org/debian stretch/main amd64 bowtie amd64 1.1.2-6 [1618 kB] Get:896 http://deb.debian.org/debian stretch/main amd64 seqan-apps amd64 2.3.1+dfsg-4 [11.5 MB] Get:897 http://deb.debian.org/debian stretch/main amd64 gasic amd64 0.0.r19-1 [19.9 kB] Get:898 http://deb.debian.org/debian stretch/main amd64 libbio-graphics-perl all 2.40-1 [611 kB] Get:899 http://deb.debian.org/debian stretch/main amd64 libbio-coordinate-perl all 1.7.1-1 [56.0 kB] Get:900 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:901 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:902 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:903 http://deb.debian.org/debian stretch/main amd64 libcgi-pm-perl all 4.35-1 [222 kB] Get:904 http://deb.debian.org/debian stretch/main amd64 libcgi-session-perl all 4.48-3 [119 kB] Get:905 http://deb.debian.org/debian stretch/main amd64 libjson-perl all 2.90-1 [86.0 kB] Get:906 http://deb.debian.org/debian stretch/main amd64 libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:907 http://deb.debian.org/debian stretch/main amd64 liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:908 http://deb.debian.org/debian stretch/main amd64 libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:909 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:910 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:911 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:912 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:913 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:914 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:915 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:916 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:917 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:918 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:919 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:920 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:921 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:922 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:923 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:924 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:925 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:926 http://deb.debian.org/debian stretch/main amd64 libterm-readkey-perl amd64 2.37-1 [27.2 kB] Get:927 http://deb.debian.org/debian stretch/main amd64 sqlite3 amd64 3.16.2-5+deb9u1 [784 kB] Get:928 http://deb.debian.org/debian stretch/main amd64 libdbi-perl amd64 1.636-1+b1 [766 kB] Get:929 http://deb.debian.org/debian stretch/main amd64 libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:930 http://deb.debian.org/debian stretch/main amd64 libjs-prototype all 1.7.1-3 [44.3 kB] Get:931 http://deb.debian.org/debian stretch/main amd64 libjs-scriptaculous all 1.9.0-2 [129 kB] Get:932 http://deb.debian.org/debian stretch/main amd64 libanyevent-perl amd64 7.130-2 [391 kB] Get:933 http://deb.debian.org/debian stretch/main amd64 libanyevent-cachedns-perl all 0.08-2 [7150 B] Get:934 http://deb.debian.org/debian stretch/main amd64 libcommon-sense-perl amd64 3.74-2 [23.6 kB] Get:935 http://deb.debian.org/debian stretch/main amd64 libanyevent-http-perl all 2.23-1 [34.6 kB] Get:936 http://deb.debian.org/debian stretch/main amd64 libstring-approx-perl amd64 3.27-1+b4 [40.0 kB] Get:937 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:938 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:939 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:940 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:941 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:942 http://deb.debian.org/debian stretch/main amd64 libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:943 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:944 http://deb.debian.org/debian stretch/main amd64 libvm-ec2-perl all 1.28-2 [768 kB] Get:945 http://deb.debian.org/debian stretch/main amd64 gbrowse all 2.56+dfsg-2 [2373 kB] Get:946 http://deb.debian.org/debian stretch/main amd64 gdpc amd64 2.2.5-6 [33.8 kB] Get:947 http://deb.debian.org/debian stretch/main amd64 genometools amd64 1.5.9+ds-4 [1903 kB] Get:948 http://deb.debian.org/debian stretch/main amd64 libtinyxml2.6.2v5 amd64 2.6.2-4 [36.8 kB] Get:949 http://deb.debian.org/debian stretch/main amd64 gentle amd64 1.9+cvs20100605+dfsg1-5 [3874 kB] Get:950 http://deb.debian.org/debian stretch/main amd64 gff2aplot amd64 2.0-8+b1 [311 kB] Get:951 http://deb.debian.org/debian stretch/main amd64 gff2ps all 0.98d-5 [44.6 kB] Get:952 http://deb.debian.org/debian stretch/main amd64 libgfortran-6-dev amd64 6.3.0-18+deb9u1 [299 kB] Get:953 http://deb.debian.org/debian stretch/main amd64 gfortran-6 amd64 6.3.0-18+deb9u1 [6916 kB] Get:954 http://deb.debian.org/debian stretch/main amd64 gfortran amd64 4:6.3.0-4 [1356 B] Get:955 http://deb.debian.org/debian stretch/main amd64 libsc-data all 2.3.1-18+deb9u1 [119 kB] Get:956 http://deb.debian.org/debian stretch/main amd64 openmpi-common all 2.0.2-2 [149 kB] Get:957 http://deb.debian.org/debian stretch/main amd64 openmpi-bin amd64 2.0.2-2 [186 kB] Get:958 http://deb.debian.org/debian stretch/main amd64 mpi-default-bin amd64 1.8 [4050 B] Get:959 http://deb.debian.org/debian stretch/main amd64 libint1 amd64 1.1.6-2+b1 [2705 kB] Get:960 http://deb.debian.org/debian stretch/main amd64 libsc7v5 amd64 2.3.1-18+deb9u1 [2320 kB] Get:961 http://deb.debian.org/debian stretch/main amd64 mpqc amd64 2.3.1-18+deb9u1 [90.1 kB] Get:962 http://deb.debian.org/debian stretch/main amd64 libmopac7-1gf amd64 1.15-6+b1 [476 kB] Get:963 http://deb.debian.org/debian stretch/main amd64 libghemical-data all 3.0.0-4.1 [109 kB] Get:964 http://deb.debian.org/debian stretch/main amd64 libghemical5v5 amd64 3.0.0-4.1+b3 [374 kB] Get:965 http://deb.debian.org/debian stretch/main amd64 liboglappth2 amd64 1.0.0-2 [34.0 kB] Get:966 http://deb.debian.org/debian stretch/main amd64 libopenbabel4v5 amd64 2.3.2+dfsg-3 [2848 kB] Get:967 http://deb.debian.org/debian stretch/main amd64 ghemical amd64 3.0.0-2 [1819 kB] Get:968 http://deb.debian.org/debian stretch/main amd64 libsuitesparseconfig4 amd64 1:4.5.4-1 [18.8 kB] Get:969 http://deb.debian.org/debian stretch/main amd64 libamd2 amd64 1:4.5.4-1 [36.3 kB] Get:970 http://deb.debian.org/debian stretch/main amd64 libcolamd2 amd64 1:4.5.4-1 [28.5 kB] Get:971 http://deb.debian.org/debian stretch/main amd64 libglpk40 amd64 4.61-1 [396 kB] Get:972 http://deb.debian.org/debian stretch/main amd64 libglpk-java amd64 1.7.0-1 [776 kB] Get:973 http://deb.debian.org/debian stretch/main amd64 glpk-utils amd64 4.61-1 [151 kB] Get:974 http://deb.debian.org/debian stretch/main amd64 tophat amd64 2.1.1+dfsg-2+b2 [755 kB] Get:975 http://deb.debian.org/debian stretch/main amd64 giira amd64 0.0.20140625-1 [144 kB] Get:976 http://deb.debian.org/debian stretch/main amd64 glam2 amd64 1064-3+b1 [240 kB] Get:977 http://deb.debian.org/debian stretch/main amd64 gnustep-base-runtime amd64 1.24.9-3.1+deb9u1 [190 kB] Get:978 http://deb.debian.org/debian stretch/main amd64 graphlan all 1.1-2 [2463 kB] Get:979 http://deb.debian.org/debian stretch/main amd64 libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:980 http://deb.debian.org/debian stretch/main amd64 libcdt5 amd64 2.38.0-17 [59.6 kB] Get:981 http://deb.debian.org/debian stretch/main amd64 libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:982 http://deb.debian.org/debian stretch/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:983 http://deb.debian.org/debian stretch/main amd64 libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:984 http://deb.debian.org/debian stretch/main amd64 libxdot4 amd64 2.38.0-17 [55.6 kB] Get:985 http://deb.debian.org/debian stretch/main amd64 libgvc6 amd64 2.38.0-17 [639 kB] Get:986 http://deb.debian.org/debian stretch/main amd64 libgvpr2 amd64 2.38.0-17 [211 kB] Get:987 http://deb.debian.org/debian stretch/main amd64 graphviz amd64 2.38.0-17 [802 kB] Get:988 http://deb.debian.org/debian stretch/main amd64 libgetopt-euclid-perl all 0.4.5-2 [47.4 kB] Get:989 http://deb.debian.org/debian stretch/main amd64 libmath-random-mt-perl amd64 1.17-1+b2 [15.2 kB] Get:990 http://deb.debian.org/debian stretch/main amd64 grinder all 0.5.4-1 [79.5 kB] Get:991 http://deb.debian.org/debian stretch/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:992 http://deb.debian.org/debian stretch/main amd64 libopus0 amd64 1.2~alpha2-1 [171 kB] Get:993 http://deb.debian.org/debian stretch/main amd64 libtheora0 amd64 1.1.1+dfsg.1-14+b1 [177 kB] Get:994 http://deb.debian.org/debian stretch/main amd64 libvisual-0.4-0 amd64 0.4.0-10 [132 kB] Get:995 http://deb.debian.org/debian stretch/main amd64 gstreamer1.0-plugins-base amd64 1.10.4-1+deb9u1 [1497 kB] Get:996 http://deb.debian.org/debian stretch/main amd64 python3-numpy amd64 1:1.12.1-3 [1934 kB] Get:997 http://deb.debian.org/debian stretch/main amd64 python3-biopython amd64 1.68+dfsg-3 [1163 kB] Get:998 http://deb.debian.org/debian stretch/main amd64 python3-nose all 1.3.7-2 [132 kB] Get:999 http://deb.debian.org/debian stretch/main amd64 fasttree amd64 2.1.9-1 [132 kB] Get:1000 http://deb.debian.org/debian stretch/main amd64 raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:1001 http://deb.debian.org/debian stretch/main amd64 gubbins amd64 2.2.0-1 [53.1 kB] Get:1002 http://deb.debian.org/debian stretch/main amd64 guile-2.0-libs amd64 2.0.13+1-4 [2232 kB] Get:1003 http://deb.debian.org/debian stretch/main amd64 gwama amd64 2.2.2+dfsg-1 [82.3 kB] Get:1004 http://deb.debian.org/debian stretch/main amd64 harvest-tools amd64 1.3-1 [134 kB] Get:1005 http://deb.debian.org/debian stretch/main amd64 hdf5-tools amd64 1.10.0-patch1+docs-3+deb9u1 [405 kB] Get:1006 http://deb.debian.org/debian stretch/main amd64 hilive amd64 0.3-2 [291 kB] Get:1007 http://deb.debian.org/debian stretch/main amd64 hisat2 amd64 2.0.5-1 [1245 kB] Get:1008 http://deb.debian.org/debian stretch/main amd64 libpvm3 amd64 3.4.6-1+b2 [89.6 kB] Get:1009 http://deb.debian.org/debian stretch/main amd64 hmmer2 amd64 2.3.2-13 [2653 kB] Get:1010 http://deb.debian.org/debian stretch/main amd64 hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:1011 http://deb.debian.org/debian stretch/main amd64 hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:1012 http://deb.debian.org/debian stretch/main amd64 libpangoxft-1.0-0 amd64 1.40.5-1 [187 kB] Get:1013 http://deb.debian.org/debian stretch/main amd64 hyphygui amd64 2.2.7+dfsg-1+b2 [1487 kB] Get:1014 http://deb.debian.org/debian stretch/main amd64 icc-profiles-free all 2.0.1+dfsg-1 [552 kB] Get:1015 http://deb.debian.org/debian stretch/main amd64 icu-devtools amd64 57.1-6+deb9u4 [178 kB] Get:1016 http://deb.debian.org/debian stretch/main amd64 idba amd64 1.1.3-1 [231 kB] Get:1017 http://deb.debian.org/debian stretch/main amd64 imagemagick-6.q16 amd64 8:6.9.7.4+dfsg-11+deb9u8 [563 kB] Get:1018 http://deb.debian.org/debian stretch/main amd64 imagemagick amd64 8:6.9.7.4+dfsg-11+deb9u8 [141 kB] Get:1019 http://deb.debian.org/debian stretch/main amd64 indelible amd64 1.03-2+b1 [367 kB] Get:1020 http://deb.debian.org/debian stretch/main amd64 infernal amd64 1.1.2-1 [22.0 MB] Get:1021 http://deb.debian.org/debian stretch/main amd64 ipig amd64 0.0.r5-2 [166 kB] Get:1022 http://deb.debian.org/debian stretch/main amd64 python-ptyprocess all 0.5.1-1 [12.5 kB] Get:1023 http://deb.debian.org/debian stretch/main amd64 python-pexpect all 4.2.1-1 [47.9 kB] Get:1024 http://deb.debian.org/debian stretch/main amd64 python-pathlib2 all 2.2.0+really2.1.0-1 [16.5 kB] Get:1025 http://deb.debian.org/debian stretch/main amd64 python-pickleshare all 0.7.4-1 [6736 B] Get:1026 http://deb.debian.org/debian stretch/main amd64 python-wcwidth all 0.1.7+dfsg1-1 [14.6 kB] Get:1027 http://deb.debian.org/debian stretch/main amd64 python-prompt-toolkit all 1.0.9-1 [174 kB] Get:1028 http://deb.debian.org/debian stretch/main amd64 python-pygments all 2.2.0+dfsg-1 [590 kB] Get:1029 http://deb.debian.org/debian stretch/main amd64 python-simplegeneric all 0.8.1-1 [11.9 kB] Get:1030 http://deb.debian.org/debian stretch/main amd64 python-ipython-genutils all 0.1.0-2 [20.7 kB] Get:1031 http://deb.debian.org/debian stretch/main amd64 python-enum34 all 1.1.6-1 [35.0 kB] Get:1032 http://deb.debian.org/debian stretch/main amd64 python-traitlets all 4.3.1-1 [60.6 kB] Get:1033 http://deb.debian.org/debian stretch/main amd64 python-backports-shutil-get-terminal-size all 1.0.0-3 [4656 B] Get:1034 http://deb.debian.org/debian stretch/main amd64 python-ipython all 5.1.0-3 [375 kB] Get:1035 http://deb.debian.org/debian stretch/main amd64 ipython all 5.1.0-3 [5496 B] Get:1036 http://deb.debian.org/debian stretch/main amd64 iqtree amd64 1.5.3+dfsg-2 [2489 kB] Get:1037 http://deb.debian.org/debian stretch/main amd64 isympy-common all 1.0-3 [189 kB] Get:1038 http://deb.debian.org/debian stretch/main amd64 python-mpmath all 0.19-3 [402 kB] Get:1039 http://deb.debian.org/debian stretch/main amd64 python-sympy all 1.0-3 [2367 kB] Get:1040 http://deb.debian.org/debian stretch/main amd64 isympy all 1.0-3 [6828 B] Get:1041 http://deb.debian.org/debian stretch/main amd64 python3-decorator all 4.0.11-1 [13.3 kB] Get:1042 http://deb.debian.org/debian stretch/main amd64 python3-networkx all 1.11-2 [624 kB] Get:1043 http://deb.debian.org/debian stretch/main amd64 kmc amd64 2.3+dfsg-5 [467 kB] Get:1044 http://deb.debian.org/debian stretch/main amd64 libbambamc0 amd64 0.0.50-1 [35.4 kB] Get:1045 http://deb.debian.org/debian stretch/main amd64 smalt amd64 0.7.6-6 [112 kB] Get:1046 http://deb.debian.org/debian stretch/main amd64 iva amd64 1.0.8+ds-1 [8577 kB] Get:1047 http://deb.debian.org/debian stretch/main amd64 jaligner all 1.0+dfsg-4 [128 kB] Get:1048 http://deb.debian.org/debian stretch/main amd64 javascript-common all 11 [6120 B] Get:1049 http://deb.debian.org/debian stretch/main amd64 jellyfish amd64 2.2.6-1+b1 [349 kB] Get:1050 http://deb.debian.org/debian stretch/main amd64 libpal-java all 1.5.1+dfsg-2 [656 kB] Get:1051 http://deb.debian.org/debian stretch/main amd64 jmodeltest all 2.1.10+dfsg-5 [981 kB] Get:1052 http://deb.debian.org/debian stretch/main amd64 icedtea-netx-common all 1.6.2-3.1+deb9u1 [1383 kB] Get:1053 http://deb.debian.org/debian stretch/main amd64 libnaga-java all 3.0+svn80-1 [379 kB] Get:1054 http://deb.debian.org/debian stretch/main amd64 libjmol-java all 14.6.4+2016.11.05+dfsg1-3 [6391 kB] Get:1055 http://deb.debian.org/debian stretch/main amd64 jmol all 14.6.4+2016.11.05+dfsg1-3 [70.9 kB] Get:1056 http://deb.debian.org/debian stretch/main amd64 kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:1057 http://deb.debian.org/debian stretch/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:1058 http://deb.debian.org/debian stretch/main amd64 libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:1059 http://deb.debian.org/debian stretch/main amd64 khmer-common all 2.0+dfsg-10 [244 kB] Get:1060 http://deb.debian.org/debian stretch/main amd64 python3-bz2file all 0.98-1 [7714 B] Get:1061 http://deb.debian.org/debian stretch/main amd64 python3-screed all 0.9-2 [71.5 kB] Get:1062 http://deb.debian.org/debian stretch/main amd64 khmer amd64 2.0+dfsg-10 [5980 kB] Get:1063 http://deb.debian.org/debian stretch/main amd64 python-h5py amd64 2.7.0-1 [634 kB] Get:1064 http://deb.debian.org/debian stretch/main amd64 python-avro all 1.8.1+dfsg-1 [58.1 kB] Get:1065 http://deb.debian.org/debian stretch/main amd64 python-iso8601 all 0.1.11-1 [12.7 kB] Get:1066 http://deb.debian.org/debian stretch/main amd64 python-urllib3 all 1.19.1-1 [77.5 kB] Get:1067 http://deb.debian.org/debian stretch/main amd64 python-chardet all 2.3.0-2 [96.0 kB] Get:1068 http://deb.debian.org/debian stretch/main amd64 python-requests all 2.12.4-1 [101 kB] Get:1069 http://deb.debian.org/debian stretch/main amd64 python-pbcommand all 0.5.3-1 [79.6 kB] Get:1070 http://deb.debian.org/debian stretch/main amd64 python-pbcore all 1.2.11+dfsg-1 [9087 kB] Get:1071 http://deb.debian.org/debian stretch/main amd64 kineticstools-data all 0.6.1+20161222-1 [102 MB] Get:1072 http://deb.debian.org/debian stretch/main amd64 python-kineticstools amd64 0.6.1+20161222-1 [49.3 kB] Get:1073 http://deb.debian.org/debian stretch/main amd64 kineticstools all 0.6.1+20161222-1 [13.3 kB] Get:1074 http://deb.debian.org/debian stretch/main amd64 king-probe amd64 2.13.110909-2 [86.5 kB] Get:1075 http://deb.debian.org/debian stretch/main amd64 kissplice amd64 2.4.0-p1-1 [781 kB] Get:1076 http://deb.debian.org/debian stretch/main amd64 sim4db amd64 0~20150903+r2013-3 [440 kB] Get:1077 http://deb.debian.org/debian stretch/main amd64 kmer all 0~20150903+r2013-3 [4266 B] Get:1078 http://deb.debian.org/debian stretch/main amd64 kraken amd64 0.10.5~beta-2+b1 [81.3 kB] Get:1079 http://deb.debian.org/debian stretch/main amd64 ksh amd64 93u+20120801-3.1 [890 kB] Get:1080 http://deb.debian.org/debian stretch/main amd64 lambda-align amd64 1.0.1-2 [1057 kB] Get:1081 http://deb.debian.org/debian stretch/main amd64 laptop-detect amd64 0.13.8 [6162 B] Get:1082 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:1083 http://deb.debian.org/debian stretch/main amd64 sysstat amd64 11.4.3-2 [360 kB] Get:1084 http://deb.debian.org/debian stretch/main amd64 parallel all 20161222-1 [307 kB] Get:1085 http://deb.debian.org/debian stretch/main amd64 last-align amd64 830-1 [725 kB] Get:1086 http://deb.debian.org/debian stretch/main amd64 lefse all 1.0+20160802-1 [44.6 kB] Get:1087 http://deb.debian.org/debian stretch/main amd64 liberror-perl all 0.17024-1 [26.9 kB] Get:1088 http://deb.debian.org/debian stretch/main amd64 libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:1089 http://deb.debian.org/debian stretch/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:1090 http://deb.debian.org/debian stretch/main amd64 libace-perl amd64 1.92-4+b1 [286 kB] Get:1091 http://deb.debian.org/debian stretch/main amd64 libfann2 amd64 2.2.0+ds-3 [66.1 kB] Get:1092 http://deb.debian.org/debian stretch/main amd64 libai-fann-perl amd64 0.10-3+b2 [28.4 kB] Get:1093 http://deb.debian.org/debian stretch/main amd64 libalgorithm-c3-perl all 0.10-1 [12.0 kB] Get:1094 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:1095 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:1096 http://deb.debian.org/debian stretch/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:1097 http://deb.debian.org/debian stretch/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:1098 http://deb.debian.org/debian stretch/main amd64 libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:1099 http://deb.debian.org/debian stretch/main amd64 libapache2-mod-perl2 amd64 2.0.10-2+deb9u1 [886 kB] Get:1100 http://deb.debian.org/debian stretch/main amd64 libapache-dbi-perl all 1.12-1 [54.6 kB] Get:1101 http://deb.debian.org/debian stretch/main amd64 libapache2-reload-perl all 0.13-1 [17.4 kB] Get:1102 http://deb.debian.org/debian stretch/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:1103 http://deb.debian.org/debian stretch/main amd64 libarchive13 amd64 3.2.2-2+deb9u2 [294 kB] Get:1104 http://deb.debian.org/debian stretch/main amd64 libarpack2 amd64 3.4.0-1+b1 [96.1 kB] Get:1105 http://deb.debian.org/debian stretch/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-2 [160 kB] Get:1106 http://deb.debian.org/debian stretch/main amd64 libarmadillo7 amd64 1:7.600.2+dfsg-2 [81.8 kB] Get:1107 http://deb.debian.org/debian stretch/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:1108 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:1109 http://deb.debian.org/debian stretch/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:1110 http://deb.debian.org/debian stretch/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:1111 http://deb.debian.org/debian stretch/main amd64 librole-tiny-perl all 2.000005-1 [19.0 kB] Get:1112 http://deb.debian.org/debian stretch/main amd64 libstrictures-perl all 2.000003-1 [18.1 kB] Get:1113 http://deb.debian.org/debian stretch/main amd64 libmoo-perl all 2.002005-1 [67.0 kB] Get:1114 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-perl all 1.000005-1 [271 kB] Get:1115 http://deb.debian.org/debian stretch/main amd64 libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:1116 http://deb.debian.org/debian stretch/main amd64 libarray-utils-perl all 0.5-1 [6254 B] Get:1117 http://deb.debian.org/debian stretch/main amd64 libasync-interrupt-perl amd64 1.21-1+b2 [33.9 kB] Get:1118 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:1119 http://deb.debian.org/debian stretch/main amd64 libvariable-magic-perl amd64 0.61-1 [45.1 kB] Get:1120 http://deb.debian.org/debian stretch/main amd64 libb-hooks-endofscope-perl all 0.21-1 [16.3 kB] Get:1121 http://deb.debian.org/debian stretch/main amd64 libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:1122 http://deb.debian.org/debian stretch/main amd64 libstaden-read11 amd64 1.14.8-2 [311 kB] Get:1123 http://deb.debian.org/debian stretch/main amd64 libbio-scf-perl amd64 1.03-3 [20.3 kB] Get:1124 http://deb.debian.org/debian stretch/main amd64 libcarp-clan-perl all 6.06-1 [12.9 kB] Get:1125 http://deb.debian.org/debian stretch/main amd64 libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:1126 http://deb.debian.org/debian stretch/main amd64 libblas-dev amd64 3.7.0-2 [162 kB] Get:1127 http://deb.debian.org/debian stretch/main amd64 libzstd1 amd64 1.1.2-1 [193 kB] Get:1128 http://deb.debian.org/debian stretch/main amd64 libblosc1 amd64 1.11.1+ds2-1 [41.0 kB] Get:1129 http://deb.debian.org/debian stretch/main amd64 libboost-atomic1.62.0 amd64 1.62.0+dfsg-4 [30.5 kB] Get:1130 http://deb.debian.org/debian stretch/main amd64 libboost-mpi1.62.0 amd64 1.62.0+dfsg-4 [70.6 kB] Get:1131 http://deb.debian.org/debian stretch/main amd64 libboost-timer1.62.0 amd64 1.62.0+dfsg-4 [34.5 kB] Get:1132 http://deb.debian.org/debian stretch/main amd64 libbpp-core2v5 amd64 2.2.0-3 [540 kB] Get:1133 http://deb.debian.org/debian stretch/main amd64 libbpp-seq9v5 amd64 2.2.0-1+b1 [485 kB] Get:1134 http://deb.debian.org/debian stretch/main amd64 libbpp-phyl9v5 amd64 2.2.0-1+b1 [1514 kB] Get:1135 http://deb.debian.org/debian stretch/main amd64 libbpp-seq-omics1v5 amd64 2.2.0-1 [249 kB] Get:1136 http://deb.debian.org/debian stretch/main amd64 libbpp-phyl-omics1v5 amd64 2.2.0-2 [67.6 kB] Get:1137 http://deb.debian.org/debian stretch/main amd64 libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:1138 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:1139 http://deb.debian.org/debian stretch/main amd64 libcaca0 amd64 0.99.beta19-2.1~deb9u1 [347 kB] Get:1140 http://deb.debian.org/debian stretch/main amd64 libcapture-tiny-perl all 0.44-1 [25.4 kB] Get:1141 http://deb.debian.org/debian stretch/main amd64 libcfitsio5 amd64 3.410-1 [517 kB] Get:1142 http://deb.debian.org/debian stretch/main amd64 libfcgi-perl amd64 0.78-2 [38.2 kB] Get:1143 http://deb.debian.org/debian stretch/main amd64 libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:1144 http://deb.debian.org/debian stretch/main amd64 libclass-c3-perl all 0.32-1 [22.1 kB] Get:1145 http://deb.debian.org/debian stretch/main amd64 libclass-c3-xs-perl amd64 0.14-1+b1 [16.3 kB] Get:1146 http://deb.debian.org/debian stretch/main amd64 libclass-data-inheritable-perl all 0.08-2 [9296 B] Get:1147 http://deb.debian.org/debian stretch/main amd64 libclass-inspector-perl all 1.31-1 [18.7 kB] Get:1148 http://deb.debian.org/debian stretch/main amd64 libparams-util-perl amd64 1.07-3+b1 [22.7 kB] Get:1149 http://deb.debian.org/debian stretch/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:1150 http://deb.debian.org/debian stretch/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:1151 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-perl all 0.37-1 [20.8 kB] Get:1152 http://deb.debian.org/debian stretch/main amd64 libclass-load-perl all 0.23-1 [15.9 kB] Get:1153 http://deb.debian.org/debian stretch/main amd64 libclass-load-xs-perl amd64 0.09-2+b1 [14.4 kB] Get:1154 http://deb.debian.org/debian stretch/main amd64 libclass-tiny-perl all 1.006-1 [18.8 kB] Get:1155 http://deb.debian.org/debian stretch/main amd64 libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:1156 http://deb.debian.org/debian stretch/main amd64 libcommons-collections4-java all 4.1-1 [656 kB] Get:1157 http://deb.debian.org/debian stretch/main amd64 libcommons-configuration-java all 1.10-4 [331 kB] Get:1158 http://deb.debian.org/debian stretch/main amd64 libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:1159 http://deb.debian.org/debian stretch/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:1160 http://deb.debian.org/debian stretch/main amd64 libcrypt-rc4-perl all 2.02-2 [8150 B] Get:1161 http://deb.debian.org/debian stretch/main amd64 libcrypto++6 amd64 5.6.4-7 [829 kB] Get:1162 http://deb.debian.org/debian stretch/main amd64 libcupsfilters1 amd64 1.11.6-3+deb9u1 [129 kB] Get:1163 http://deb.debian.org/debian stretch/main amd64 libdate-calc-perl all 6.4-1 [194 kB] Get:1164 http://deb.debian.org/debian stretch/main amd64 libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:1165 http://deb.debian.org/debian stretch/main amd64 libdate-manip-perl all 6.57-1 [911 kB] Get:1166 http://deb.debian.org/debian stretch/main amd64 libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:1167 http://deb.debian.org/debian stretch/main amd64 libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:1168 http://deb.debian.org/debian stretch/main amd64 libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:1169 http://deb.debian.org/debian stretch/main amd64 libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:1170 http://deb.debian.org/debian stretch/main amd64 libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:1171 http://deb.debian.org/debian stretch/main amd64 libmro-compat-perl all 0.12-1 [13.2 kB] Get:1172 http://deb.debian.org/debian stretch/main amd64 libsub-identify-perl amd64 0.12-2+b1 [11.5 kB] Get:1173 http://deb.debian.org/debian stretch/main amd64 libdevel-overloadinfo-perl all 0.004-1 [7270 B] Get:1174 http://deb.debian.org/debian stretch/main amd64 libsub-name-perl amd64 0.21-1 [13.1 kB] Get:1175 http://deb.debian.org/debian stretch/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:1176 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-perl all 0.986-1 [49.9 kB] Get:1177 http://deb.debian.org/debian stretch/main amd64 libdevel-partialdump-perl all 0.18-2 [14.6 kB] Get:1178 http://deb.debian.org/debian stretch/main amd64 libdevel-stacktrace-perl all 2.0200-1 [27.3 kB] Get:1179 http://deb.debian.org/debian stretch/main amd64 libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:1180 http://deb.debian.org/debian stretch/main amd64 libdist-checkconflicts-perl all 0.11-1 [10.8 kB] Get:1181 http://deb.debian.org/debian stretch/main amd64 libdjvulibre-text all 3.5.27.1-7 [60.7 kB] Get:1182 http://deb.debian.org/debian stretch/main amd64 libdjvulibre21 amd64 3.5.27.1-7 [568 kB] Get:1183 http://deb.debian.org/debian stretch/main amd64 libisorelax-java all 20041111-9 [62.4 kB] Get:1184 http://deb.debian.org/debian stretch/main amd64 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:1185 http://deb.debian.org/debian stretch/main amd64 libmsv-java all 2009.1+dfsg1-5 [771 kB] Get:1186 http://deb.debian.org/debian stretch/main amd64 libxpp2-java all 2.1.10-7 [147 kB] Get:1187 http://deb.debian.org/debian stretch/main amd64 libxpp3-java all 1.1.4c-2 [349 kB] Get:1188 http://deb.debian.org/debian stretch/main amd64 libdom4j-java all 1.6.1+dfsg.3-2+deb9u1 [348 kB] Get:1189 http://deb.debian.org/debian stretch/main amd64 libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:1190 http://deb.debian.org/debian stretch/main amd64 libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:1191 http://deb.debian.org/debian stretch/main amd64 libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:1192 http://deb.debian.org/debian stretch/main amd64 libemail-date-format-perl all 1.005-1 [7050 B] Get:1193 http://deb.debian.org/debian stretch/main amd64 libenv-path-perl all 0.19-1 [22.0 kB] Get:1194 http://deb.debian.org/debian stretch/main amd64 liberfa1 amd64 1.3.0-2 [115 kB] Get:1195 http://deb.debian.org/debian stretch/main amd64 libeval-closure-perl all 0.14-1 [11.5 kB] Get:1196 http://deb.debian.org/debian stretch/main amd64 libexception-class-perl all 1.42-1 [31.5 kB] Get:1197 http://deb.debian.org/debian stretch/main amd64 libexpat1-dev amd64 2.2.0-2+deb9u3 [134 kB] Get:1198 http://deb.debian.org/debian stretch/main amd64 libfastutil-java all 7.0.13-1 [14.4 MB] Get:1199 http://deb.debian.org/debian stretch/main amd64 libfile-chdir-perl all 0.1008-1 [13.3 kB] Get:1200 http://deb.debian.org/debian stretch/main amd64 libfile-copy-link-perl all 0.140-2 [16.1 kB] Get:1201 http://deb.debian.org/debian stretch/main amd64 libfile-desktopentry-perl all 0.22-1 [19.2 kB] Get:1202 http://deb.debian.org/debian stretch/main amd64 libfile-fcntllock-perl amd64 0.22-3+b2 [35.3 kB] Get:1203 http://deb.debian.org/debian stretch/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:1204 http://deb.debian.org/debian stretch/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:1205 http://deb.debian.org/debian stretch/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:1206 http://deb.debian.org/debian stretch/main amd64 libfile-grep-perl all 0.02-1 [7654 B] Get:1207 http://deb.debian.org/debian stretch/main amd64 libfile-homedir-perl all 1.00-1 [48.9 kB] Get:1208 http://deb.debian.org/debian stretch/main amd64 libfile-mimeinfo-perl all 0.27-1 [50.2 kB] Get:1209 http://deb.debian.org/debian stretch/main amd64 libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:1210 http://deb.debian.org/debian stretch/main amd64 libfile-slurper-perl all 0.009-1 [7850 B] Get:1211 http://deb.debian.org/debian stretch/main amd64 libfindbin-libs-perl all 2.150-1 [28.7 kB] Get:1212 http://deb.debian.org/debian stretch/main amd64 libfltk1.3 amd64 1.3.4-4 [550 kB] Get:1213 http://deb.debian.org/debian stretch/main amd64 libfltk-images1.3 amd64 1.3.4-4 [57.9 kB] Get:1214 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:1215 http://deb.debian.org/debian stretch/main amd64 libfreecontact0v5 amd64 1.0.21-5 [70.1 kB] Get:1216 http://deb.debian.org/debian stretch/main amd64 libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:1217 http://deb.debian.org/debian stretch/main amd64 libfribidi0 amd64 0.19.7-1+deb9u1 [45.6 kB] Get:1218 http://deb.debian.org/debian stretch/main amd64 libftgl2 amd64 2.1.3~rc5-4+nmu1.1 [98.3 kB] Get:1219 http://deb.debian.org/debian stretch/main amd64 libfuse2 amd64 2.9.7-1+deb9u2 [126 kB] Get:1220 http://deb.debian.org/debian stretch/main amd64 libg20 amd64 0.72-6 [42.5 kB] Get:1221 http://deb.debian.org/debian stretch/main amd64 libgail18 amd64 2.24.31-2 [54.1 kB] Get:1222 http://deb.debian.org/debian stretch/main amd64 libgail-common amd64 2.24.31-2 [153 kB] Get:1223 http://deb.debian.org/debian stretch/main amd64 libsvg-perl all 2.64-1 [69.8 kB] Get:1224 http://deb.debian.org/debian stretch/main amd64 libgd-svg-perl all 0.33-1 [64.8 kB] Get:1225 http://deb.debian.org/debian stretch/main amd64 libgenome-1.3-0v5 amd64 1.3.1-9 [111 kB] Get:1226 http://deb.debian.org/debian stretch/main amd64 libgetopt-java all 1.0.14+dfsg-3 [24.9 kB] Get:1227 http://deb.debian.org/debian stretch/main amd64 libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:1228 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:1229 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:1230 http://deb.debian.org/debian stretch/main amd64 libgmpxx4ldbl amd64 2:6.1.2+dfsg-1 [22.2 kB] Get:1231 http://deb.debian.org/debian stretch/main amd64 libgmp-dev amd64 2:6.1.2+dfsg-1 [631 kB] Get:1232 http://deb.debian.org/debian stretch/main amd64 libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:1233 http://deb.debian.org/debian stretch/main amd64 libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:1234 http://deb.debian.org/debian stretch/main amd64 libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:1235 http://deb.debian.org/debian stretch/main amd64 libxml-twig-perl all 1:3.50-1 [179 kB] Get:1236 http://deb.debian.org/debian stretch/main amd64 libxml-xpath-perl all 1.40-1 [69.2 kB] Get:1237 http://deb.debian.org/debian stretch/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get:1238 http://deb.debian.org/debian stretch/main amd64 libyaml-perl all 1.21-1 [64.8 kB] Get:1239 http://deb.debian.org/debian stretch/main amd64 libgo-perl all 0.15-5 [268 kB] Get:1240 http://deb.debian.org/debian stretch/main amd64 libgraph-perl all 1:0.96-2 [126 kB] Get:1241 http://deb.debian.org/debian stretch/main amd64 libparse-yapp-perl all 1.05-12 [50.5 kB] Get:1242 http://deb.debian.org/debian stretch/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:1243 http://deb.debian.org/debian stretch/main amd64 libgraph-readwrite-perl all 2.09-1 [44.7 kB] Get:1244 http://deb.debian.org/debian stretch/main amd64 libntlm0 amd64 1.4-8 [20.9 kB] Get:1245 http://deb.debian.org/debian stretch/main amd64 libgsasl7 amd64 1.8.0-8+b2 [207 kB] Get:1246 http://deb.debian.org/debian stretch/main amd64 libgsl-dev amd64 2.3+dfsg-1 [992 kB] Get:1247 http://deb.debian.org/debian stretch/main amd64 libgtk-3-bin amd64 3.22.11-1 [110 kB] Get:1248 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-bin amd64 2.24.31-2 [47.1 kB] Get:1249 http://deb.debian.org/debian stretch/main amd64 libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:1250 http://deb.debian.org/debian stretch/main amd64 libguard-perl amd64 1.023-1+b2 [15.8 kB] Get:1251 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:1252 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:1253 http://deb.debian.org/debian stretch/main amd64 libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:1254 http://deb.debian.org/debian stretch/main amd64 libicu-dev amd64 57.1-6+deb9u4 [16.5 MB] Get:1255 http://deb.debian.org/debian stretch/main amd64 libilmbase12 amd64 2.2.0-12 [85.3 kB] Get:1256 http://deb.debian.org/debian stretch/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:1257 http://deb.debian.org/debian stretch/main amd64 libio-stringy-perl all 2.111-2 [61.2 kB] Get:1258 http://deb.debian.org/debian stretch/main amd64 libipc-shareable-perl all 0.61-1 [35.4 kB] Get:1259 http://deb.debian.org/debian stretch/main amd64 libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:1260 http://deb.debian.org/debian stretch/main amd64 libjline-java all 1.0-2 [69.5 kB] Get:1261 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:1262 http://deb.debian.org/debian stretch/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:1263 http://deb.debian.org/debian stretch/main amd64 libjs-bootstrap all 3.3.7+dfsg-2+deb9u2 [277 kB] Get:1264 http://deb.debian.org/debian stretch/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:1265 http://deb.debian.org/debian stretch/main amd64 libjs-es5-shim all 4.5.9-1 [41.3 kB] Get:1266 http://deb.debian.org/debian stretch/main amd64 libjs-json all 0~20160510-1 [24.2 kB] Get:1267 http://deb.debian.org/debian stretch/main amd64 libtypes-serialiser-perl all 1.0-1 [12.7 kB] Get:1268 http://deb.debian.org/debian stretch/main amd64 libjson-xs-perl amd64 3.030-1 [91.6 kB] Get:1269 http://deb.debian.org/debian stretch/main amd64 libvecmath-java all 1.5.2-5 [76.9 kB] Get:1270 http://deb.debian.org/debian stretch/main amd64 libjung-free-java all 2.0.1+dfsg-1 [976 kB] Get:1271 http://deb.debian.org/debian stretch/main amd64 libjxr0 amd64 1.1-6+b1 [160 kB] Get:1272 http://deb.debian.org/debian stretch/main amd64 libjxr-tools amd64 1.1-6+b1 [17.0 kB] Get:1273 http://deb.debian.org/debian stretch/main amd64 libmbedcrypto0 amd64 2.4.2-1+deb9u3 [171 kB] Get:1274 http://deb.debian.org/debian stretch/main amd64 libmbedx509-0 amd64 2.4.2-1+deb9u3 [70.7 kB] Get:1275 http://deb.debian.org/debian stretch/main amd64 libmbedtls10 amd64 2.4.2-1+deb9u3 [102 kB] Get:1276 http://deb.debian.org/debian stretch/main amd64 libmbedtls-dev amd64 2.4.2-1+deb9u3 [161 kB] Get:1277 http://deb.debian.org/debian stretch/main amd64 libkdf5-2 amd64 2.8.1+dfsg-2 [13.6 kB] Get:1278 http://deb.debian.org/debian stretch/main amd64 libkyotocabinet16v5 amd64 1.2.76-4.2+b1 [298 kB] Get:1279 http://deb.debian.org/debian stretch/main amd64 liblapack-dev amd64 3.7.0-2 [2170 kB] Get:1280 http://deb.debian.org/debian stretch/main amd64 liblog-dispatch-perl all 2.58-1 [72.5 kB] Get:1281 http://deb.debian.org/debian stretch/main amd64 liblog-log4perl-perl all 1.48-1+deb9u1 [376 kB] Get:1282 http://deb.debian.org/debian stretch/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:1283 http://deb.debian.org/debian stretch/main amd64 liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:1284 http://deb.debian.org/debian stretch/main amd64 libopenexr22 amd64 2.2.0-11+b1 [577 kB] Get:1285 http://deb.debian.org/debian stretch/main amd64 libwmf0.2-7 amd64 0.2.8.4-10.6 [167 kB] Get:1286 http://deb.debian.org/debian stretch/main amd64 libmagickcore-6.q16-3-extra amd64 8:6.9.7.4+dfsg-11+deb9u8 [191 kB] Get:1287 http://deb.debian.org/debian stretch/main amd64 libsys-hostname-long-perl all 1.5-1 [12.0 kB] Get:1288 http://deb.debian.org/debian stretch/main amd64 libmail-sendmail-perl all 0.79.16-2 [24.9 kB] Get:1289 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:1290 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:1291 http://deb.debian.org/debian stretch/main amd64 mailutils-common all 1:3.1.1-1 [642 kB] Get:1292 http://deb.debian.org/debian stretch/main amd64 libmailutils5 amd64 1:3.1.1-1 [817 kB] Get:1293 http://deb.debian.org/debian stretch/main amd64 libmath-derivative-perl all 0.04-2 [7208 B] Get:1294 http://deb.debian.org/debian stretch/main amd64 libmath-spline-perl all 0.02-1 [7992 B] Get:1295 http://deb.debian.org/debian stretch/main amd64 libmuscle-3.7-1 amd64 3.7+4565-2 [252 kB] Get:1296 http://deb.debian.org/debian stretch/main amd64 libmems-1.6-1v5 amd64 1.6.0+4725-4 [644 kB] Get:1297 http://deb.debian.org/debian stretch/main amd64 libmime-lite-perl all 3.030-2 [72.3 kB] Get:1298 http://deb.debian.org/debian stretch/main amd64 libmime-tools-perl all 5.508-1 [212 kB] Get:1299 http://deb.debian.org/debian stretch/main amd64 libmime-types-perl all 2.13-1 [61.7 kB] Get:1300 http://deb.debian.org/debian stretch/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:1301 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-conflicts-perl all 0.003-1 [6882 B] Get:1302 http://deb.debian.org/debian stretch/main amd64 libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB] Get:1303 http://deb.debian.org/debian stretch/main amd64 libpackage-stash-xs-perl amd64 0.28-3+b1 [17.9 kB] Get:1304 http://deb.debian.org/debian stretch/main amd64 libmoose-perl amd64 2.1807-1 [801 kB] Get:1305 http://deb.debian.org/debian stretch/main amd64 libnanoxml2-java all 2.2.3.dfsg-5 [58.1 kB] Get:1306 http://deb.debian.org/debian stretch/main amd64 libncbi-vdb2 amd64 2.8.1+dfsg-2 [1037 kB] Get:1307 http://deb.debian.org/debian stretch/main amd64 libncbi-wvdb2 amd64 2.8.1+dfsg-2 [939 kB] Get:1308 http://deb.debian.org/debian stretch/main amd64 libncbi6 amd64 6.1.20170106+dfsg1-0+deb9u1 [4024 kB] Get:1309 http://deb.debian.org/debian stretch/main amd64 libtinfo-dev amd64 6.0+20161126-1+deb9u2 [79.2 kB] Get:1310 http://deb.debian.org/debian stretch/main amd64 libncurses5-dev amd64 6.0+20161126-1+deb9u2 [175 kB] Get:1311 http://deb.debian.org/debian stretch/main amd64 libncursesw5-dev amd64 6.0+20161126-1+deb9u2 [200 kB] Get:1312 http://deb.debian.org/debian stretch/main amd64 libnet-dbus-perl amd64 1.1.0-4+b1 [179 kB] Get:1313 http://deb.debian.org/debian stretch/main amd64 libnetpbm10 amd64 2:10.0-15.3+b2 [86.7 kB] Get:1314 http://deb.debian.org/debian stretch/main amd64 libole-storage-lite-perl all 0.19-1+deb9u1 [23.4 kB] Get:1315 http://deb.debian.org/debian stretch/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:1316 http://deb.debian.org/debian stretch/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:1317 http://deb.debian.org/debian stretch/main amd64 libpam-cap amd64 1:2.25-1 [13.5 kB] Get:1318 http://deb.debian.org/debian stretch/main amd64 libpcre32-3 amd64 2:8.39-3 [248 kB] Get:1319 http://deb.debian.org/debian stretch/main amd64 libpcre3-dev amd64 2:8.39-3 [647 kB] Get:1320 http://deb.debian.org/debian stretch/main amd64 libperl4-corelibs-perl all 0.003-2+deb9u1 [38.0 kB] Get:1321 http://deb.debian.org/debian stretch/main amd64 libperlio-utf8-strict-perl amd64 0.006-1+b2 [11.3 kB] Get:1322 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:1323 http://deb.debian.org/debian stretch/main amd64 libpng-dev amd64 1.6.28-1+deb9u1 [250 kB] Get:1324 http://deb.debian.org/debian stretch/main amd64 libpng-tools amd64 1.6.28-1+deb9u1 [133 kB] Get:1325 http://deb.debian.org/debian stretch/main amd64 libpod-coverage-perl all 0.23-1 [23.9 kB] Get:1326 http://deb.debian.org/debian stretch/main amd64 libpostscript-perl all 0.06-2 [31.4 kB] Get:1327 http://deb.debian.org/debian stretch/main amd64 libprocessing-core-java all 1.2.1-1 [173 kB] Get:1328 http://deb.debian.org/debian stretch/main amd64 libpython2.7-dev amd64 2.7.13-2+deb9u3 [28.2 MB] Get:1329 http://deb.debian.org/debian stretch/main amd64 libpython-dev amd64 2.7.13-2 [20.1 kB] Get:1330 http://deb.debian.org/debian stretch/main amd64 qtchooser amd64 63-g13a3d08-1 [25.2 kB] Get:1331 http://deb.debian.org/debian stretch/main amd64 qdbus amd64 4:4.8.7+dfsg-11 [76.8 kB] Get:1332 http://deb.debian.org/debian stretch/main amd64 libqt4-dbus amd64 4:4.8.7+dfsg-11 [52.7 kB] Get:1333 http://deb.debian.org/debian stretch/main amd64 libqt4-script amd64 4:4.8.7+dfsg-11 [861 kB] Get:1334 http://deb.debian.org/debian stretch/main amd64 libqt4-declarative amd64 4:4.8.7+dfsg-11 [1131 kB] Get:1335 http://deb.debian.org/debian stretch/main amd64 libqt4-designer amd64 4:4.8.7+dfsg-11 [3679 kB] Get:1336 http://deb.debian.org/debian stretch/main amd64 libqt4-help amd64 4:4.8.7+dfsg-11 [252 kB] Get:1337 http://deb.debian.org/debian stretch/main amd64 libqt4-scripttools amd64 4:4.8.7+dfsg-11 [270 kB] Get:1338 http://deb.debian.org/debian stretch/main amd64 libqt4-sql-mysql amd64 4:4.8.7+dfsg-11 [76.9 kB] Get:1339 http://deb.debian.org/debian stretch/main amd64 libqt4-svg amd64 4:4.8.7+dfsg-11 [185 kB] Get:1340 http://deb.debian.org/debian stretch/main amd64 libqt5xml5 amd64 5.7.1+dfsg-3+deb9u2 [120 kB] Get:1341 http://deb.debian.org/debian stretch/main amd64 libqtassistantclient4 amd64 4.6.3-7+b1 [12.9 kB] Get:1342 http://deb.debian.org/debian stretch/main amd64 librdp-taxonomy-tree-java all 1.2.0-1 [17.4 kB] Get:1343 http://deb.debian.org/debian stretch/main amd64 libreadline-dev amd64 7.0-3 [132 kB] Get:1344 http://deb.debian.org/debian stretch/main amd64 librelion+gui-1.4-1 amd64 1.4+dfsg-2+b2 [653 kB] Get:1345 http://deb.debian.org/debian stretch/main amd64 librhino-java all 1.7.7.1-1 [1160 kB] Get:1346 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:1347 http://deb.debian.org/debian stretch/main amd64 libsaxon-java all 1:6.5.5-10 [1076 kB] Get:1348 http://deb.debian.org/debian stretch/main amd64 libsdl1.2debian amd64 1.2.15+dfsg1-4 [185 kB] Get:1349 http://deb.debian.org/debian stretch/main amd64 libsmithwaterman0 amd64 0.0+20160702-1+b1 [33.0 kB] Get:1350 http://deb.debian.org/debian stretch/main amd64 libsnp-sites1 amd64 2.3.2-1 [11.1 kB] Get:1351 http://deb.debian.org/debian stretch/main amd64 libtask-weaken-perl all 1.04-1 [7990 B] Get:1352 http://deb.debian.org/debian stretch/main amd64 libsoap-lite-perl all 1.20-1 [259 kB] Get:1353 http://deb.debian.org/debian stretch/main amd64 libsort-naturally-perl all 1.03-1 [13.9 kB] Get:1354 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:1355 http://deb.debian.org/debian stretch/main amd64 libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:1356 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:1357 http://deb.debian.org/debian stretch/main amd64 libsprng2 amd64 2.0a-10 [75.6 kB] Get:1358 http://deb.debian.org/debian stretch/main amd64 libsquizz amd64 0.99c+dfsg-1 [265 kB] Get:1359 http://deb.debian.org/debian stretch/main amd64 libssw-java amd64 1.1-1+b1 [13.8 kB] Get:1360 http://deb.debian.org/debian stretch/main amd64 libsub-uplevel-perl all 0.2600-1 [16.1 kB] Get:1361 http://deb.debian.org/debian stretch/main amd64 libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:1362 http://deb.debian.org/debian stretch/main amd64 libsvg-graph-perl all 0.02-2 [130 kB] Get:1363 http://deb.debian.org/debian stretch/main amd64 libtabixpp0 amd64 1.0.0-2 [7864 B] Get:1364 http://deb.debian.org/debian stretch/main amd64 libtest-deep-perl all 1.126-1 [48.4 kB] Get:1365 http://deb.debian.org/debian stretch/main amd64 libtext-diff-perl all 1.44-1 [27.4 kB] Get:1366 http://deb.debian.org/debian stretch/main amd64 libtest-differences-perl all 0.64-1 [18.0 kB] Get:1367 http://deb.debian.org/debian stretch/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:1368 http://deb.debian.org/debian stretch/main amd64 libtest-file-perl all 1.442-1 [19.8 kB] Get:1369 http://deb.debian.org/debian stretch/main amd64 libtest-files-perl all 0.14-1 [11.2 kB] Get:1370 http://deb.debian.org/debian stretch/main amd64 libtest-warn-perl all 0.32-1 [15.1 kB] Get:1371 http://deb.debian.org/debian stretch/main amd64 libtest-simple-perl all 1.302075-1 [298 kB] Get:1372 http://deb.debian.org/debian stretch/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:1373 http://deb.debian.org/debian stretch/main amd64 libtest-output-perl all 1.03-1 [13.9 kB] Get:1374 http://deb.debian.org/debian stretch/main amd64 libtest-pod-perl all 1.51-1 [14.7 kB] Get:1375 http://deb.debian.org/debian stretch/main amd64 libtext-charwidth-perl amd64 0.04-7+b5 [9870 B] Get:1376 http://deb.debian.org/debian stretch/main amd64 libtext-csv-perl all 1.33-2 [50.5 kB] Get:1377 http://deb.debian.org/debian stretch/main amd64 libtext-csv-xs-perl amd64 1.26-1 [114 kB] Get:1378 http://deb.debian.org/debian stretch/main amd64 libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:1379 http://deb.debian.org/debian stretch/main amd64 libtext-wrapi18n-perl all 0.06-7.1 [8644 B] Get:1380 http://deb.debian.org/debian stretch/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:1381 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:1382 http://deb.debian.org/debian stretch/main amd64 libutempter0 amd64 1.1.6-3 [7812 B] Get:1383 http://deb.debian.org/debian stretch/main amd64 libvcflib1 amd64 1.0.0~rc1+dfsg1-3 [130 kB] Get:1384 http://deb.debian.org/debian stretch/main amd64 libvcflib-tools amd64 1.0.0~rc1+dfsg1-3 [620 kB] Get:1385 http://deb.debian.org/debian stretch/main amd64 libvibrant6b amd64 6.1.20170106+dfsg1-0+deb9u1 [1275 kB] Get:1386 http://deb.debian.org/debian stretch/main amd64 libvte-common all 1:0.28.2-5 [435 kB] Get:1387 http://deb.debian.org/debian stretch/main amd64 libvte9 amd64 1:0.28.2-5+b2 [618 kB] Get:1388 http://deb.debian.org/debian stretch/main amd64 libwacom-bin amd64 0.22-1+b1 [6150 B] Get:1389 http://deb.debian.org/debian stretch/main amd64 libwcs5 amd64 5.16-1 [263 kB] Get:1390 http://deb.debian.org/debian stretch/main amd64 libwebpdemux2 amd64 0.5.2-1 [73.7 kB] Get:1391 http://deb.debian.org/debian stretch/main amd64 libwebpmux2 amd64 0.5.2-1 [83.9 kB] Get:1392 http://deb.debian.org/debian stretch/main amd64 libx11-protocol-perl all 0.56-7 [150 kB] Get:1393 http://deb.debian.org/debian stretch/main amd64 libxerces-c3.1 amd64 3.1.4+debian-2+deb9u1 [842 kB] Get:1394 http://deb.debian.org/debian stretch/main amd64 libxfont1 amd64 1:1.5.2-4 [136 kB] Get:1395 http://deb.debian.org/debian stretch/main amd64 libxml-perl all 0.08-2 [113 kB] Get:1396 http://deb.debian.org/debian stretch/main amd64 libxml-regexp-perl all 0.04-1 [8370 B] Get:1397 http://deb.debian.org/debian stretch/main amd64 libxml-dom-perl all 1.44-2 [179 kB] Get:1398 http://deb.debian.org/debian stretch/main amd64 libxml-checker-perl all 0.13-6 [44.9 kB] Get:1399 http://deb.debian.org/debian stretch/main amd64 libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:1400 http://deb.debian.org/debian stretch/main amd64 libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:1401 http://deb.debian.org/debian stretch/main amd64 libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:1402 http://deb.debian.org/debian stretch/main amd64 libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:1403 http://deb.debian.org/debian stretch/main amd64 libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:1404 http://deb.debian.org/debian stretch/main amd64 libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:1405 http://deb.debian.org/debian stretch/main amd64 libxom-java all 1.2.10-1 [170 kB] Get:1406 http://deb.debian.org/debian stretch/main amd64 libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:1407 http://deb.debian.org/debian stretch/main amd64 libyaml-tiny-perl all 1.70-1 [32.0 kB] Get:1408 http://deb.debian.org/debian stretch/main amd64 libzeus-jscl-java all 1.72-1 [129 kB] Get:1409 http://deb.debian.org/debian stretch/main amd64 lmodern all 2.004.5-3 [9461 kB] Get:1410 http://deb.debian.org/debian stretch/main amd64 swi-prolog-nox amd64 7.2.3+dfsg-6 [3025 kB] Get:1411 http://deb.debian.org/debian stretch/main amd64 swi-prolog-x amd64 7.2.3+dfsg-6 [2000 kB] Get:1412 http://deb.debian.org/debian stretch/main amd64 swi-prolog amd64 7.2.3+dfsg-6 [17.0 kB] Get:1413 http://deb.debian.org/debian stretch/main amd64 logol-bin amd64 1.7.5-1 [142 kB] Get:1414 http://deb.debian.org/debian stretch/main amd64 loki amd64 2.4.7.4-6+b1 [359 kB] Get:1415 http://deb.debian.org/debian stretch/main amd64 ltrsift amd64 1.0.2-7 [104 kB] Get:1416 http://deb.debian.org/debian stretch/main amd64 lynx-common all 2.8.9dev11-1 [1098 kB] Get:1417 http://deb.debian.org/debian stretch/main amd64 macs amd64 2.1.1.20160309-1 [1011 kB] Get:1418 http://deb.debian.org/debian stretch/main amd64 macsyfinder all 1.0.2-3 [7155 kB] Get:1419 http://deb.debian.org/debian stretch/main amd64 maffilter amd64 1.1.0-1+dfsg-2+b2 [277 kB] Get:1420 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:1421 http://deb.debian.org/debian stretch/main amd64 mailutils amd64 1:3.1.1-1 [573 kB] Get:1422 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] Get:1423 http://deb.debian.org/debian stretch/main amd64 r-cran-codetools all 0.2-15-1 [46.2 kB] Get:1424 http://deb.debian.org/debian stretch/main amd64 r-cran-iterators all 1.0.8-1 [306 kB] Get:1425 http://deb.debian.org/debian stretch/main amd64 r-cran-foreach all 1.4.3-1 [371 kB] Get:1426 http://deb.debian.org/debian stretch/main amd64 r-cran-gam amd64 1.14-1 [203 kB] Get:1427 http://deb.debian.org/debian stretch/main amd64 r-cran-inline all 0.3.14-1 [91.8 kB] Get:1428 http://deb.debian.org/debian stretch/main amd64 seqtk amd64 1.2-1 [28.6 kB] Get:1429 http://deb.debian.org/debian stretch/main amd64 r-cran-rcppgsl amd64 0.3.2-2 [306 kB] Get:1430 http://deb.debian.org/debian stretch/main amd64 mapdamage all 2.0.6+dfsg-2 [38.8 kB] Get:1431 http://deb.debian.org/debian stretch/main amd64 mapsembler2 amd64 2.2.3+dfsg-3+b1 [250 kB] Get:1432 http://deb.debian.org/debian stretch/main amd64 maq amd64 0.7.1-7 [311 kB] Get:1433 http://deb.debian.org/debian stretch/main amd64 maqview amd64 0.2.5-7+b1 [113 kB] Get:1434 http://deb.debian.org/debian stretch/main amd64 massxpert-data all 3.6.1-1 [87.5 kB] Get:1435 http://deb.debian.org/debian stretch/main amd64 massxpert amd64 3.6.1-1 [877 kB] Get:1436 http://deb.debian.org/debian stretch/main amd64 progressivemauve amd64 1.2.0+4713-2+b2 [828 kB] Get:1437 http://deb.debian.org/debian stretch/main amd64 mauve-aligner amd64 2.4.0+4734-3 [493 kB] Get:1438 http://deb.debian.org/debian stretch/main amd64 mcl amd64 1:14-137-1+b1 [619 kB] Get:1439 http://deb.debian.org/debian stretch/main amd64 melting amd64 4.3.1+dfsg-2+b1 [663 kB] Get:1440 http://deb.debian.org/debian stretch/main amd64 mesa-utils amd64 8.3.0-3 [32.7 kB] Get:1441 http://deb.debian.org/debian stretch/main amd64 metaphlan2-data all 2.6.0+ds-2 [204 MB] Get:1442 http://deb.debian.org/debian stretch/main amd64 sphinx-common all 1.4.9-2 [350 kB] Get:1443 http://deb.debian.org/debian stretch/main amd64 pyqi all 0.3.2+dfsg-2 [72.0 kB] Get:1444 http://deb.debian.org/debian stretch/main amd64 python-colorama all 0.3.7-1 [25.7 kB] Get:1445 http://deb.debian.org/debian stretch/main amd64 python-click all 6.6-1 [56.1 kB] Get:1446 http://deb.debian.org/debian stretch/main amd64 python-configparser all 3.3.0r2-2 [62.1 kB] Get:1447 http://deb.debian.org/debian stretch/main amd64 python-future all 0.15.2-4 [347 kB] Get:1448 http://deb.debian.org/debian stretch/main amd64 python-biom-format amd64 2.1.5+dfsg-7 [183 kB] Get:1449 http://deb.debian.org/debian stretch/main amd64 python-msgpack amd64 0.4.8-1 [67.8 kB] Get:1450 http://deb.debian.org/debian stretch/main amd64 python-pandas-lib amd64 0.19.2-5.1 [2275 kB] Get:1451 http://deb.debian.org/debian stretch/main amd64 python-pandas all 0.19.2-5.1 [2616 kB] Get:1452 http://deb.debian.org/debian stretch/main amd64 metaphlan2 all 2.6.0+ds-2 [73.3 MB] Get:1453 http://deb.debian.org/debian stretch/main amd64 metastudent-data all 2.0.1-2 [225 MB] Get:1454 http://deb.debian.org/debian stretch/main amd64 metastudent all 2.0.1-4 [5979 kB] Get:1455 http://deb.debian.org/debian stretch/main amd64 mhap all 2.1.1+dfsg-1 [159 kB] Get:1456 http://deb.debian.org/debian stretch/main amd64 python-matplotlib-venn all 0.11.5-1 [28.8 kB] Get:1457 http://deb.debian.org/debian stretch/main amd64 python-sip amd64 4.18.1+dfsg-2 [88.7 kB] Get:1458 http://deb.debian.org/debian stretch/main amd64 python-qt4 amd64 4.11.4+dfsg-2+b1 [2198 kB] Get:1459 http://deb.debian.org/debian stretch/main amd64 microbegps all 1.0.0-2 [14.2 MB] Get:1460 http://deb.debian.org/debian stretch/main amd64 nast-ier amd64 20101212+dfsg1-1+b1 [20.9 kB] Get:1461 http://deb.debian.org/debian stretch/main amd64 wigeon all 20101212+dfsg1-1 [29.8 kB] Get:1462 http://deb.debian.org/debian stretch/main amd64 microbiomeutil all 20101212+dfsg1-1 [19.0 kB] Get:1463 http://deb.debian.org/debian stretch/main amd64 minia amd64 1.6906-1+b2 [67.9 kB] Get:1464 http://deb.debian.org/debian stretch/main amd64 miniasm amd64 0.2+dfsg-2+b1 [29.5 kB] Get:1465 http://deb.debian.org/debian stretch/main amd64 minimap amd64 0.2-3+b1 [26.8 kB] Get:1466 http://deb.debian.org/debian stretch/main amd64 mipe all 1.1-5 [62.4 kB] Get:1467 http://deb.debian.org/debian stretch/main amd64 mlv-smile amd64 1.47-4+b1 [190 kB] Get:1468 http://deb.debian.org/debian stretch/main amd64 mothur amd64 1.38.1.1-1 [4740 kB] Get:1469 http://deb.debian.org/debian stretch/main amd64 mrbayes amd64 3.2.6+dfsg-1+b4 [588 kB] Get:1470 http://deb.debian.org/debian stretch/main amd64 r-cran-gtools amd64 3.5.0-1 [139 kB] Get:1471 http://deb.debian.org/debian stretch/main amd64 r-cran-gdata all 2.17.0-1 [933 kB] Get:1472 http://deb.debian.org/debian stretch/main amd64 r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:1473 http://deb.debian.org/debian stretch/main amd64 r-cran-catools amd64 1.17.1-1+b1 [160 kB] Get:1474 http://deb.debian.org/debian stretch/main amd64 r-cran-kernsmooth amd64 2.23-15-2 [81.7 kB] Get:1475 http://deb.debian.org/debian stretch/main amd64 r-cran-gplots all 3.0.1-2 [522 kB] Get:1476 http://deb.debian.org/debian stretch/main amd64 r-cran-rocr all 1.0-7-2 [161 kB] Get:1477 http://deb.debian.org/debian stretch/main amd64 murasaki-common all 1.68.6-6 [144 kB] Get:1478 http://deb.debian.org/debian stretch/main amd64 murasaki amd64 1.68.6-6+b4 [479 kB] Get:1479 http://deb.debian.org/debian stretch/main amd64 muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:1480 http://deb.debian.org/debian stretch/main amd64 mustang amd64 3.2.3-1 [113 kB] Get:1481 http://deb.debian.org/debian stretch/main amd64 nanopolish amd64 0.5.0-1+b1 [1915 kB] Get:1482 http://deb.debian.org/debian stretch/main amd64 ncbi-entrez-direct amd64 6.10.20170123+ds-1 [577 kB] Get:1483 http://deb.debian.org/debian stretch/main amd64 ncbi-epcr amd64 2.3.12-1-4 [113 kB] Get:1484 http://deb.debian.org/debian stretch/main amd64 ncbi-tools-bin amd64 6.1.20170106+dfsg1-0+deb9u1 [521 kB] Get:1485 http://deb.debian.org/debian stretch/main amd64 ncbi-tools-x11 amd64 6.1.20170106+dfsg1-0+deb9u1 [1120 kB] Get:1486 http://deb.debian.org/debian stretch/main amd64 ncl-tools amd64 2.1.18+dfsg-2+b1 [104 kB] Get:1487 http://deb.debian.org/debian stretch/main amd64 ncoils amd64 2002-4+b1 [21.4 kB] Get:1488 http://deb.debian.org/debian stretch/main amd64 netpbm amd64 2:10.0-15.3+b2 [1029 kB] Get:1489 http://deb.debian.org/debian stretch/main amd64 njplot amd64 2.4-7 [95.3 kB] Get:1490 http://deb.debian.org/debian stretch/main amd64 notification-daemon amd64 3.20.0-1+b1 [60.5 kB] Get:1491 http://deb.debian.org/debian stretch/main amd64 paraclu amd64 9-1+b2 [10.5 kB] Get:1492 http://deb.debian.org/debian stretch/main amd64 parafly amd64 0.0.2013.01.21-3+b1 [16.4 kB] Get:1493 http://deb.debian.org/debian stretch/main amd64 parsinsert amd64 1.04-2 [59.8 kB] Get:1494 http://deb.debian.org/debian stretch/main amd64 phipack amd64 0.0.20160614-2 [50.6 kB] Get:1495 http://deb.debian.org/debian stretch/main amd64 parsnp amd64 1.2+dfsg-3 [528 kB] Get:1496 http://deb.debian.org/debian stretch/main amd64 python-pbalign all 0.3.0-1 [37.2 kB] Get:1497 http://deb.debian.org/debian stretch/main amd64 pbalign all 0.3.0-1 [7482 B] Get:1498 http://deb.debian.org/debian stretch/main amd64 pbbamtools amd64 0.7.4+ds-1 [116 kB] Get:1499 http://deb.debian.org/debian stretch/main amd64 pbbarcode amd64 0.8.0-4 [26.5 kB] Get:1500 http://deb.debian.org/debian stretch/main amd64 pbdagcon amd64 0.3+20161121+ds-1 [322 kB] Get:1501 http://deb.debian.org/debian stretch/main amd64 python-pbconsensuscore amd64 1.0.2-2 [651 kB] Get:1502 http://deb.debian.org/debian stretch/main amd64 python-pbgenomicconsensus all 2.1.0-1 [45.7 kB] Get:1503 http://deb.debian.org/debian stretch/main amd64 pbgenomicconsensus all 2.1.0-1 [26.6 kB] Get:1504 http://deb.debian.org/debian stretch/main amd64 python-pbh5tools amd64 0.8.0+dfsg-5 [29.0 kB] Get:1505 http://deb.debian.org/debian stretch/main amd64 pbh5tools all 0.8.0+dfsg-5 [8282 B] Get:1506 http://deb.debian.org/debian stretch/main amd64 python-pbsuite-utils all 15.8.24+dfsg-2 [508 kB] Get:1507 http://deb.debian.org/debian stretch/main amd64 pbjelly all 15.8.24+dfsg-2 [1210 kB] Get:1508 http://deb.debian.org/debian stretch/main amd64 python-pbbanana all 15.8.24+dfsg-2 [19.3 kB] Get:1509 http://deb.debian.org/debian stretch/main amd64 python-sortedcontainers all 1.5.7-1 [26.2 kB] Get:1510 http://deb.debian.org/debian stretch/main amd64 python-intervaltree all 2.1.0-2 [32.0 kB] Get:1511 http://deb.debian.org/debian stretch/main amd64 python-intervaltree-bio all 1.0.1-1 [7818 B] Get:1512 http://deb.debian.org/debian stretch/main amd64 pbhoney all 15.8.24+dfsg-2 [1311 kB] Get:1513 http://deb.debian.org/debian stretch/main amd64 pbsim amd64 1.0.3-2 [24.5 kB] Get:1514 http://deb.debian.org/debian stretch/main amd64 pbsuite all 15.8.24+dfsg-2 [4732 B] Get:1515 http://deb.debian.org/debian stretch/main amd64 pdb2pqr amd64 2.1.1+dfsg-2 [373 kB] Get:1516 http://deb.debian.org/debian stretch/main amd64 perl-doc all 5.24.1-3+deb9u7 [7145 kB] Get:1517 http://deb.debian.org/debian stretch/main amd64 perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:1518 http://deb.debian.org/debian stretch/main amd64 perlprimer all 1.2.3-1 [96.7 kB] Get:1519 http://deb.debian.org/debian stretch/main amd64 perm amd64 0.4.0-2 [121 kB] Get:1520 http://deb.debian.org/debian stretch/main amd64 phybin amd64 0.3-1+b1 [1785 kB] Get:1521 http://deb.debian.org/debian stretch/main amd64 phylip amd64 1:3.696+dfsg-5 [942 kB] Get:1522 http://deb.debian.org/debian stretch/main amd64 phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:1523 http://deb.debian.org/debian stretch/main amd64 physamp amd64 0.2.0-1+b1 [233 kB] Get:1524 http://deb.debian.org/debian stretch/main amd64 phyutility amd64 2.7.3-1 [897 kB] Get:1525 http://deb.debian.org/debian stretch/main amd64 picard-tools all 2.8.1+dfsg-1 [7788 B] Get:1526 http://deb.debian.org/debian stretch/main amd64 piler amd64 0~20140707-1+b1 [40.2 kB] Get:1527 http://deb.debian.org/debian stretch/main amd64 pirs-profiles all 2.0.2+dfsg-5.1 [2566 kB] Get:1528 http://deb.debian.org/debian stretch/main amd64 ttf-liberation all 1:1.07.4-2 [9878 B] Get:1529 http://deb.debian.org/debian stretch/main amd64 pirs amd64 2.0.2+dfsg-5.1+b1 [111 kB] Get:1530 http://deb.debian.org/debian stretch/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:1531 http://deb.debian.org/debian stretch/main amd64 placnet all 1.03-2 [10.5 kB] Get:1532 http://deb.debian.org/debian stretch/main amd64 python-tk amd64 2.7.13-1 [27.4 kB] Get:1533 http://deb.debian.org/debian stretch/main amd64 plasmidomics all 0.2.0-5 [6844 B] Get:1534 http://deb.debian.org/debian stretch/main amd64 plast amd64 2.3.1+dfsg-4 [609 kB] Get:1535 http://deb.debian.org/debian stretch/main amd64 plink amd64 1.07-7 [1186 kB] Get:1536 http://deb.debian.org/debian stretch/main amd64 plink1.9 amd64 1.90~b3.45-170113-1 [866 kB] Get:1537 http://deb.debian.org/debian stretch/main amd64 python-pmw all 1.3.2-6 [120 kB] Get:1538 http://deb.debian.org/debian stretch/main amd64 python-opengl all 3.1.0+dfsg-1 [501 kB] Get:1539 http://deb.debian.org/debian stretch/main amd64 pymol-data all 1.8.4.0+dfsg-1 [1322 kB] Get:1540 http://deb.debian.org/debian stretch/main amd64 pymol amd64 1.8.4.0+dfsg-1 [3794 kB] Get:1541 http://deb.debian.org/debian stretch/main amd64 python-lxml amd64 3.7.1-1 [903 kB] Get:1542 http://deb.debian.org/debian stretch/main amd64 python-openbabel amd64 2.3.2+dfsg-3 [809 kB] Get:1543 http://deb.debian.org/debian stretch/main amd64 plip all 1.3.3+dfsg-1 [53.2 kB] Get:1544 http://deb.debian.org/debian stretch/main amd64 poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:1545 http://deb.debian.org/debian stretch/main amd64 python-seaborn all 0.7.1-4 [128 kB] Get:1546 http://deb.debian.org/debian stretch/main amd64 poretools all 0.6.0+dfsg-2 [19.0 kB] Get:1547 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:1548 http://deb.debian.org/debian stretch/main amd64 preview-latex-style all 11.90-1 [200 kB] Get:1549 http://deb.debian.org/debian stretch/main amd64 prime-phylo amd64 1.0.11-4+b3 [856 kB] Get:1550 http://deb.debian.org/debian stretch/main amd64 primer3 amd64 2.3.7-3 [173 kB] Get:1551 http://deb.debian.org/debian stretch/main amd64 proalign amd64 0.603-2 [149 kB] Get:1552 http://deb.debian.org/debian stretch/main amd64 probabel amd64 0.4.5-3+b1 [544 kB] Get:1553 http://deb.debian.org/debian stretch/main amd64 probalign amd64 1.4-5 [65.4 kB] Get:1554 http://deb.debian.org/debian stretch/main amd64 probcons amd64 1.12-11 [107 kB] Get:1555 http://deb.debian.org/debian stretch/main amd64 proda amd64 1.0-10 [60.1 kB] Get:1556 http://deb.debian.org/debian stretch/main amd64 texlive-base all 2016.20170123-5 [15.8 MB] Get:1557 http://deb.debian.org/debian stretch/main amd64 texlive-latex-base all 2016.20170123-5 [861 kB] Get:1558 http://deb.debian.org/debian stretch/main amd64 texlive-generic-recommended all 2016.20170123-5 [2889 kB] Get:1559 http://deb.debian.org/debian stretch/main amd64 texlive-latex-recommended all 2016.20170123-5 [13.2 MB] Get:1560 http://deb.debian.org/debian stretch/main amd64 texlive-pictures all 2016.20170123-5 [3908 kB] Get:1561 http://deb.debian.org/debian stretch/main amd64 texlive-pstricks all 2016.20170123-5 [26.2 MB] Get:1562 http://deb.debian.org/debian stretch/main amd64 prosper all 1.00.4+cvs.2007.05.01-4.1 [420 kB] Get:1563 http://deb.debian.org/debian stretch/main amd64 proteinortho amd64 5.15+dfsg-1 [251 kB] Get:1564 http://deb.debian.org/debian stretch/main amd64 prottest all 3.4.2+dfsg-2 [347 kB] Get:1565 http://deb.debian.org/debian stretch/main amd64 ps2eps amd64 1.68+binaryfree-2 [37.9 kB] Get:1566 http://deb.debian.org/debian stretch/main amd64 psmisc amd64 22.21-2.1+b2 [123 kB] Get:1567 http://deb.debian.org/debian stretch/main amd64 python-wxversion all 3.0.2.0+dfsg-4 [114 kB] Get:1568 http://deb.debian.org/debian stretch/main amd64 python-wxgtk3.0 amd64 3.0.2.0+dfsg-4 [5270 kB] Get:1569 http://deb.debian.org/debian stretch/main amd64 python-lmfit all 0.9.5+dfsg-2 [84.5 kB] Get:1570 http://deb.debian.org/debian stretch/main amd64 pycorrfit amd64 0.9.9+dfsg-2 [820 kB] Get:1571 http://deb.debian.org/debian stretch/main amd64 python-configobj all 5.0.6-2 [35.2 kB] Get:1572 http://deb.debian.org/debian stretch/main amd64 python-ply all 3.9-1 [64.3 kB] Get:1573 http://deb.debian.org/debian stretch/main amd64 python-py all 1.4.32-3 [82.8 kB] Get:1574 http://deb.debian.org/debian stretch/main amd64 python-pytest all 3.0.6-1 [184 kB] Get:1575 http://deb.debian.org/debian stretch/main amd64 python-astropy amd64 1.3-8 [2716 kB] Get:1576 http://deb.debian.org/debian stretch/main amd64 python-multipletau all 0.1.7+ds-1 [11.0 kB] Get:1577 http://deb.debian.org/debian stretch/main amd64 pyscanfcs amd64 0.2.3-3 [541 kB] Get:1578 http://deb.debian.org/debian stretch/main amd64 python-antlr all 2.7.7+dfsg-7 [25.8 kB] Get:1579 http://deb.debian.org/debian stretch/main amd64 python-babel-localedata all 2.3.4+dfsg.1-2 [3402 kB] Get:1580 http://deb.debian.org/debian stretch/main amd64 python-babel all 2.3.4+dfsg.1-2 [82.5 kB] Get:1581 http://deb.debian.org/debian stretch/main amd64 python-biopython-doc all 1.68+dfsg-3 [11.8 MB] Get:1582 http://deb.debian.org/debian stretch/main amd64 python-bs4 all 4.5.3-1 [86.7 kB] Get:1583 http://deb.debian.org/debian stretch/main amd64 python-cairo amd64 1.8.8-2.2 [42.5 kB] Get:1584 http://deb.debian.org/debian stretch/main amd64 python-cffi-backend amd64 1.9.1-2 [69.0 kB] Get:1585 http://deb.debian.org/debian stretch/main amd64 python-crypto amd64 2.6.1-7 [259 kB] Get:1586 http://deb.debian.org/debian stretch/main amd64 python-idna all 2.2-1 [32.6 kB] Get:1587 http://deb.debian.org/debian stretch/main amd64 python-ipaddress all 1.0.17-1 [18.1 kB] Get:1588 http://deb.debian.org/debian stretch/main amd64 python-pyasn1 all 0.1.9-2 [51.8 kB] Get:1589 http://deb.debian.org/debian stretch/main amd64 python-setuptools all 33.1.1-1 [297 kB] Get:1590 http://deb.debian.org/debian stretch/main amd64 python-cryptography amd64 1.7.1-3+deb9u2 [212 kB] Get:1591 http://deb.debian.org/debian stretch/main amd64 libdsdp-5.8gf amd64 5.8-9.4 [189 kB] Get:1592 http://deb.debian.org/debian stretch/main amd64 python-cvxopt amd64 1.1.4-1.5+deb9u1 [1338 kB] Get:1593 http://deb.debian.org/debian stretch/main amd64 python-dendropy all 4.2.0+dfsg-1 [7496 kB] Get:1594 http://deb.debian.org/debian stretch/main amd64 python2.7-dev amd64 2.7.13-2+deb9u3 [290 kB] Get:1595 http://deb.debian.org/debian stretch/main amd64 python-dev amd64 2.7.13-2 [1126 B] Get:1596 http://deb.debian.org/debian stretch/main amd64 python-roman all 2.0.0-2 [8130 B] Get:1597 http://deb.debian.org/debian stretch/main amd64 python-docutils all 0.13.1+dfsg-2 [373 kB] Get:1598 http://deb.debian.org/debian stretch/main amd64 python-egenix-mxtools amd64 3.2.9-1 [78.0 kB] Get:1599 http://deb.debian.org/debian stretch/main amd64 python-egenix-mxdatetime amd64 3.2.9-1 [72.2 kB] Get:1600 http://deb.debian.org/debian stretch/main amd64 python-gobject-2 amd64 2.28.6-13 [289 kB] Get:1601 http://deb.debian.org/debian stretch/main amd64 python-gtk2 amd64 2.24.0-5.1 [642 kB] Get:1602 http://deb.debian.org/debian stretch/main amd64 python-glade2 amd64 2.24.0-5.1 [43.4 kB] Get:1603 http://deb.debian.org/debian stretch/main amd64 python-gmpy amd64 1.17-3 [74.3 kB] Get:1604 http://deb.debian.org/debian stretch/main amd64 python-webencodings all 0.5-2 [10.3 kB] Get:1605 http://deb.debian.org/debian stretch/main amd64 python-html5lib all 0.999999999-1 [88.0 kB] Get:1606 http://deb.debian.org/debian stretch/main amd64 python-imagesize all 0.7.1-1 [3814 B] Get:1607 http://deb.debian.org/debian stretch/main amd64 python-pil amd64 4.0.0-4+deb9u1 [376 kB] Get:1608 http://deb.debian.org/debian stretch/main amd64 python-imaging all 4.0.0-4+deb9u1 [50.5 kB] Get:1609 http://deb.debian.org/debian stretch/main amd64 python-jdcal all 1.0-1.2~deb9u1 [7756 B] Get:1610 http://deb.debian.org/debian stretch/main amd64 python-markupsafe amd64 0.23-3 [14.4 kB] Get:1611 http://deb.debian.org/debian stretch/main amd64 python-jinja2 all 2.8-1 [111 kB] Get:1612 http://deb.debian.org/debian stretch/main amd64 python-mako all 1.0.6+ds1-2 [62.1 kB] Get:1613 http://deb.debian.org/debian stretch/main amd64 python-mysqldb amd64 1.3.7-1.1 [52.1 kB] Get:1614 http://deb.debian.org/debian stretch/main amd64 python-nose all 1.3.7-2 [132 kB] Get:1615 http://deb.debian.org/debian stretch/main amd64 python-numexpr amd64 2.6.1-4 [142 kB] Get:1616 http://deb.debian.org/debian stretch/main amd64 python-openpyxl all 2.3.0-3 [199 kB] Get:1617 http://deb.debian.org/debian stretch/main amd64 python-openssl all 16.2.0-1 [43.7 kB] Get:1618 http://deb.debian.org/debian stretch/main amd64 python-patsy all 0.4.1+git34-ga5b54c2-1 [171 kB] Get:1619 http://deb.debian.org/debian stretch/main amd64 python-pyglet all 1.1.4.dfsg-3 [736 kB] Get:1620 http://deb.debian.org/debian stretch/main amd64 python-pygraphviz amd64 1.4~rc1-1 [75.9 kB] Get:1621 http://deb.debian.org/debian stretch/main amd64 python-pysqlite2 amd64 2.7.0-1 [35.0 kB] Get:1622 http://deb.debian.org/debian stretch/main amd64 python-renderpm amd64 3.3.0-2+deb9u1 [47.3 kB] Get:1623 http://deb.debian.org/debian stretch/main amd64 python-singledispatch all 3.4.0.3-2 [9690 B] Get:1624 http://deb.debian.org/debian stretch/main amd64 python-rpy2 amd64 2.8.5-1 [155 kB] Get:1625 http://deb.debian.org/debian stretch/main amd64 python-ruffus all 2.6.3+dfsg-4 [98.3 kB] Get:1626 http://deb.debian.org/debian stretch/main amd64 python-simplejson amd64 3.10.0-1 [70.5 kB] Get:1627 http://deb.debian.org/debian stretch/main amd64 python-sklearn-lib amd64 0.18-5 [1578 kB] Get:1628 http://deb.debian.org/debian stretch/main amd64 python-sklearn all 0.18-5 [1383 kB] Get:1629 http://deb.debian.org/debian stretch/main amd64 python-alabaster all 0.7.8-1 [18.4 kB] Get:1630 http://deb.debian.org/debian stretch/main amd64 python-sphinx all 1.4.9-2 [434 kB] Get:1631 http://deb.debian.org/debian stretch/main amd64 python-sqlalchemy all 1.0.15+ds1-1 [646 kB] Get:1632 http://deb.debian.org/debian stretch/main amd64 python-sqlalchemy-ext amd64 1.0.15+ds1-1 [18.7 kB] Get:1633 http://deb.debian.org/debian stretch/main amd64 python-sympy-doc all 1.0-3 [4876 kB] Get:1634 http://deb.debian.org/debian stretch/main amd64 python-tables-lib amd64 3.3.0-5 [402 kB] Get:1635 http://deb.debian.org/debian stretch/main amd64 python-tables-data all 3.3.0-5 [50.9 kB] Get:1636 http://deb.debian.org/debian stretch/main amd64 python-tables all 3.3.0-5 [341 kB] Get:1637 http://deb.debian.org/debian stretch/main amd64 python-xlrd all 1.0.0-1 [107 kB] Get:1638 http://deb.debian.org/debian stretch/main amd64 python-xlwt all 0.7.5+debian1-1 [85.1 kB] Get:1639 http://deb.debian.org/debian stretch/main amd64 python3-bs4 all 4.5.3-1 [86.6 kB] Get:1640 http://deb.debian.org/debian stretch/main amd64 python3-chardet all 2.3.0-2 [96.0 kB] Get:1641 http://deb.debian.org/debian stretch/main amd64 python3-six all 1.10.0-3 [14.4 kB] Get:1642 http://deb.debian.org/debian stretch/main amd64 python3-webencodings all 0.5-2 [10.4 kB] Get:1643 http://deb.debian.org/debian stretch/main amd64 python3-html5lib all 0.999999999-1 [86.3 kB] Get:1644 http://deb.debian.org/debian stretch/main amd64 python3-pil amd64 4.0.0-4+deb9u1 [377 kB] Get:1645 http://deb.debian.org/debian stretch/main amd64 python3-py all 1.4.32-3 [82.9 kB] Get:1646 http://deb.debian.org/debian stretch/main amd64 python3-pytest all 3.0.6-1 [184 kB] Get:1647 http://deb.debian.org/debian stretch/main amd64 python3-renderpm amd64 3.3.0-2+deb9u1 [47.4 kB] Get:1648 http://deb.debian.org/debian stretch/main amd64 python3-yaml amd64 3.12-1 [108 kB] Get:1649 http://deb.debian.org/debian stretch/main amd64 qt-at-spi amd64 0.4.0-5 [61.6 kB] Get:1650 http://deb.debian.org/debian stretch/main amd64 qt5-gtk-platformtheme amd64 5.7.1+dfsg-3+deb9u2 [130 kB] Get:1651 http://deb.debian.org/debian stretch/main amd64 qtltools amd64 1.1+dfsg-1 [700 kB] Get:1652 http://deb.debian.org/debian stretch/main amd64 qttranslations5-l10n all 5.7.1~20161021-1 [1219 kB] Get:1653 http://deb.debian.org/debian stretch/main amd64 r-cran-boot all 1.3-18-2 [577 kB] Get:1654 http://deb.debian.org/debian stretch/main amd64 r-cran-foreign amd64 0.8.67-1 [211 kB] Get:1655 http://deb.debian.org/debian stretch/main amd64 r-cran-nlme amd64 3.1.129-1 [2042 kB] Get:1656 http://deb.debian.org/debian stretch/main amd64 r-cran-mgcv amd64 1.8-16-1 [2106 kB] Get:1657 http://deb.debian.org/debian stretch/main amd64 r-cran-class amd64 7.3-14-1 [80.9 kB] Get:1658 http://deb.debian.org/debian stretch/main amd64 r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:1659 http://deb.debian.org/debian stretch/main amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] Get:1660 http://deb.debian.org/debian stretch/main amd64 r-recommended all 3.3.3-1 [2706 B] Get:1661 http://deb.debian.org/debian stretch/main amd64 r-base all 3.3.3-1 [40.7 kB] Get:1662 http://deb.debian.org/debian stretch/main amd64 xauth amd64 1:1.0.9-1+b2 [39.6 kB] Get:1663 http://deb.debian.org/debian stretch/main amd64 r-base-dev all 3.3.3-1 [4402 B] Get:1664 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocgenerics all 0.20.0-1 [483 kB] Get:1665 http://deb.debian.org/debian stretch/main amd64 r-bioc-biobase amd64 2.34.0-1 [1989 kB] Get:1666 http://deb.debian.org/debian stretch/main amd64 r-bioc-s4vectors amd64 0.12.1-2+b1 [1114 kB] Get:1667 http://deb.debian.org/debian stretch/main amd64 r-bioc-iranges amd64 2.8.1-1+b1 [1438 kB] Get:1668 http://deb.debian.org/debian stretch/main amd64 r-cran-dbi amd64 0.5-1-1 [332 kB] Get:1669 http://deb.debian.org/debian stretch/main amd64 r-cran-memoise all 1.0.0-1 [24.4 kB] Get:1670 http://deb.debian.org/debian stretch/main amd64 r-cran-rsqlite amd64 1.1-2-1 [745 kB] Get:1671 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationdbi all 1.36.1-2 [4190 kB] Get:1672 http://deb.debian.org/debian stretch/main amd64 r-cran-xml amd64 3.98-1.5-1 [1652 kB] Get:1673 http://deb.debian.org/debian stretch/main amd64 r-cran-xtable all 1:1.8-2-1 [694 kB] Get:1674 http://deb.debian.org/debian stretch/main amd64 r-cran-rcurl amd64 1.95-4.8-2 [607 kB] Get:1675 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotate amd64 1.52.1+dfsg-1 [1908 kB] Get:1676 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocinstaller all 1.24.0-1 [59.3 kB] Get:1677 http://deb.debian.org/debian stretch/main amd64 r-cran-httpuv amd64 1.3.3-3 [227 kB] Get:1678 http://deb.debian.org/debian stretch/main amd64 r-cran-jsonlite amd64 1.2-1 [589 kB] Get:1679 http://deb.debian.org/debian stretch/main amd64 r-cran-r6 all 2.2.0-2 [128 kB] Get:1680 http://deb.debian.org/debian stretch/main amd64 r-cran-sourcetools amd64 0.1.5-1 [43.0 kB] Get:1681 http://deb.debian.org/debian stretch/main amd64 r-cran-shiny all 1.0.0+dfsg-1 [1025 kB] Get:1682 http://deb.debian.org/debian stretch/main amd64 r-bioc-interactivedisplaybase all 1.12.0-1 [33.4 kB] Get:1683 http://deb.debian.org/debian stretch/main amd64 r-cran-curl amd64 2.3-1 [353 kB] Get:1684 http://deb.debian.org/debian stretch/main amd64 r-cran-openssl amd64 0.9.6-1 [552 kB] Get:1685 http://deb.debian.org/debian stretch/main amd64 r-cran-httr all 1.2.1-1 [262 kB] Get:1686 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationhub all 2.6.4-1 [388 kB] Get:1687 http://deb.debian.org/debian stretch/main amd64 r-cran-lambda.r all 1.1.9-1 [66.7 kB] Get:1688 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.options all 1.0.0-2 [15.4 kB] Get:1689 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.logger all 1.4.3-1 [90.8 kB] Get:1690 http://deb.debian.org/debian stretch/main amd64 r-cran-snow all 1:0.4.2-1 [65.0 kB] Get:1691 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocparallel all 1.8.1-1 [633 kB] Get:1692 http://deb.debian.org/debian stretch/main amd64 r-bioc-biomart all 2.30.0-1 [183 kB] Get:1693 http://deb.debian.org/debian stretch/main amd64 r-bioc-biomformat all 1.2.0-1 [167 kB] Get:1694 http://deb.debian.org/debian stretch/main amd64 r-bioc-xvector amd64 0.14.0-1+b1 [338 kB] Get:1695 http://deb.debian.org/debian stretch/main amd64 r-bioc-biostrings amd64 2.42.1-1 [13.5 MB] Get:1696 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomeinfodb all 1.10.3-1 [14.7 MB] Get:1697 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicranges amd64 1.26.2-1+b1 [1474 kB] Get:1698 http://deb.debian.org/debian stretch/main amd64 r-bioc-summarizedexperiment all 1.4.0-2 [1354 kB] Get:1699 http://deb.debian.org/debian stretch/main amd64 r-bioc-rsamtools amd64 1.26.1-2+b1 [3241 kB] Get:1700 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicalignments amd64 1.10.0-1+b1 [1487 kB] Get:1701 http://deb.debian.org/debian stretch/main amd64 r-bioc-rtracklayer amd64 1.34.1-1 [1831 kB] Get:1702 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicfeatures all 1.26.2-1 [1054 kB] Get:1703 http://deb.debian.org/debian stretch/main amd64 r-bioc-bsgenome all 1.42.0-2 [6483 kB] Get:1704 http://deb.debian.org/debian stretch/main amd64 r-bioc-variantannotation amd64 1.20.2-1+b1 [2233 kB] Get:1705 http://deb.debian.org/debian stretch/main amd64 r-bioc-ensembldb all 1.6.2-1 [1254 kB] Get:1706 http://deb.debian.org/debian stretch/main amd64 r-bioc-biovizbase amd64 1.22.0-2 [2537 kB] Get:1707 http://deb.debian.org/debian stretch/main amd64 r-cran-fastcluster amd64 1.1.22-1 [179 kB] Get:1708 http://deb.debian.org/debian stretch/main amd64 r-cran-matrixstats amd64 0.51.0-1 [567 kB] Get:1709 http://deb.debian.org/debian stretch/main amd64 r-bioc-gviz all 1.18.1-1 [4296 kB] Get:1710 http://deb.debian.org/debian stretch/main amd64 r-bioc-cummerbund all 2.16.0-2 [2127 kB] Get:1711 http://deb.debian.org/debian stretch/main amd64 r-bioc-genefilter amd64 1.56.0-1 [1538 kB] Get:1712 http://deb.debian.org/debian stretch/main amd64 r-bioc-geneplotter all 1.52.0-2 [1492 kB] Get:1713 http://deb.debian.org/debian stretch/main amd64 r-bioc-deseq2 amd64 1.14.1-1 [1642 kB] Get:1714 http://deb.debian.org/debian stretch/main amd64 r-bioc-dnacopy amd64 1.48.0-1 [375 kB] Get:1715 http://deb.debian.org/debian stretch/main amd64 r-cran-blockmodeling amd64 0.1.8-1 [192 kB] Get:1716 http://deb.debian.org/debian stretch/main amd64 r-cran-crayon amd64 1.3.2-1 [705 kB] Get:1717 http://deb.debian.org/debian stretch/main amd64 r-cran-praise all 1.0.0-1 [17.5 kB] Get:1718 http://deb.debian.org/debian stretch/main amd64 r-cran-testthat amd64 1.0.2-2 [415 kB] Get:1719 http://deb.debian.org/debian stretch/main amd64 r-bioc-ebseq all 1.14.0-1 [1025 kB] Get:1720 http://deb.debian.org/debian stretch/main amd64 r-bioc-limma amd64 3.30.8+dfsg-1 [1055 kB] Get:1721 http://deb.debian.org/debian stretch/main amd64 r-bioc-edger amd64 3.14.0+dfsg-1 [543 kB] Get:1722 http://deb.debian.org/debian stretch/main amd64 r-bioc-hilbertvis amd64 1.32.0-1 [972 kB] Get:1723 http://deb.debian.org/debian stretch/main amd64 r-bioc-mergeomics all 1.2.0-1 [2592 kB] Get:1724 http://deb.debian.org/debian stretch/main amd64 r-cran-glmnet amd64 2.0-5-1 [1583 kB] Get:1725 http://deb.debian.org/debian stretch/main amd64 r-bioc-metagenomeseq all 1.16.0-2 [1940 kB] Get:1726 http://deb.debian.org/debian stretch/main amd64 r-bioc-multtest amd64 2.30.0-1 [637 kB] Get:1727 http://deb.debian.org/debian stretch/main amd64 r-cran-ade4 amd64 1.7-5-1 [4022 kB] Get:1728 http://deb.debian.org/debian stretch/main amd64 r-cran-ape amd64 4.0-1 [1373 kB] Get:1729 http://deb.debian.org/debian stretch/main amd64 r-cran-registry all 0.3-1 [190 kB] Get:1730 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgmaker amd64 0.22-1 [549 kB] Get:1731 http://deb.debian.org/debian stretch/main amd64 r-cran-rngtools amd64 1.2.4-2 [153 kB] Get:1732 http://deb.debian.org/debian stretch/main amd64 r-cran-gridbase all 0.4-7-2 [164 kB] Get:1733 http://deb.debian.org/debian stretch/main amd64 r-cran-doparallel amd64 1.0.10-3 [183 kB] Get:1734 http://deb.debian.org/debian stretch/main amd64 r-cran-nmf amd64 0.20.6-1 [2402 kB] Get:1735 http://deb.debian.org/debian stretch/main amd64 r-cran-irlba amd64 2.1.2-1 [241 kB] Get:1736 http://deb.debian.org/debian stretch/main amd64 r-cran-igraph amd64 1.0.1-1+deb9u1 [3118 kB] Get:1737 http://deb.debian.org/debian stretch/main amd64 r-cran-permute all 0.9-4-1 [493 kB] Get:1738 http://deb.debian.org/debian stretch/main amd64 r-cran-vegan amd64 2.4-2-1 [2605 kB] Get:1739 http://deb.debian.org/debian stretch/main amd64 r-bioc-phyloseq all 1.19.1-2 [3105 kB] Get:1740 http://deb.debian.org/debian stretch/main amd64 r-bioc-qvalue all 2.6.0-1 [2788 kB] Get:1741 http://deb.debian.org/debian stretch/main amd64 r-cran-segmented all 0.5-1.4-1 [154 kB] Get:1742 http://deb.debian.org/debian stretch/main amd64 r-cran-seqinr amd64 3.3-3-1 [3760 kB] Get:1743 http://deb.debian.org/debian stretch/main amd64 r-cran-dplyr amd64 0.5.0-1 [1340 kB] Get:1744 http://deb.debian.org/debian stretch/main amd64 r-cran-sp amd64 1:1.2-4-1 [1474 kB] Get:1745 http://deb.debian.org/debian stretch/main amd64 r-cran-learnbayes all 2.15-3 [1075 kB] Get:1746 http://deb.debian.org/debian stretch/main amd64 r-cran-deldir amd64 0.1-12-1 [138 kB] Get:1747 http://deb.debian.org/debian stretch/main amd64 r-cran-coda all 0.19-1-1 [205 kB] Get:1748 http://deb.debian.org/debian stretch/main amd64 r-cran-gmodels all 2.16.2-2 [80.0 kB] Get:1749 http://deb.debian.org/debian stretch/main amd64 r-cran-spdep amd64 0.6-9-1 [3572 kB] Get:1750 http://deb.debian.org/debian stretch/main amd64 r-cran-adegenet amd64 2.0.1-1 [2178 kB] Get:1751 http://deb.debian.org/debian stretch/main amd64 r-cran-adegraphics all 1.0-6-1 [2811 kB] Get:1752 http://deb.debian.org/debian stretch/main amd64 r-cran-prettyunits all 1.0.2-1 [26.4 kB] Get:1753 http://deb.debian.org/debian stretch/main amd64 r-cran-progress all 1.1.2-1 [41.0 kB] Get:1754 http://deb.debian.org/debian stretch/main amd64 r-cran-rncl amd64 0.8.2-1 [413 kB] Get:1755 http://deb.debian.org/debian stretch/main amd64 r-cran-xml2 amd64 1.1.0-1 [257 kB] Get:1756 http://deb.debian.org/debian stretch/main amd64 r-cran-reshape all 0.8.6-1 [124 kB] Get:1757 http://deb.debian.org/debian stretch/main amd64 r-cran-bold all 0.4.0-1 [63.3 kB] Get:1758 http://deb.debian.org/debian stretch/main amd64 r-cran-rredlist all 0.2.0-1 [54.1 kB] Get:1759 http://deb.debian.org/debian stretch/main amd64 r-cran-rentrez all 1.0.4-1 [96.4 kB] Get:1760 http://deb.debian.org/debian stretch/main amd64 r-cran-rotl all 3.0.1-1 [238 kB] Get:1761 http://deb.debian.org/debian stretch/main amd64 r-cran-solrium all 0.4.0-1 [268 kB] Get:1762 http://deb.debian.org/debian stretch/main amd64 r-cran-ritis all 0.5.4-1 [114 kB] Get:1763 http://deb.debian.org/debian stretch/main amd64 r-cran-taxize all 0.8.0-1 [668 kB] Get:1764 http://deb.debian.org/debian stretch/main amd64 r-cran-uuid amd64 0.1.2-8 [15.3 kB] Get:1765 http://deb.debian.org/debian stretch/main amd64 r-cran-tidyr amd64 0.6.1-1 [337 kB] Get:1766 http://deb.debian.org/debian stretch/main amd64 r-cran-rnexml all 2.0.7-1 [337 kB] Get:1767 http://deb.debian.org/debian stretch/main amd64 r-cran-phylobase amd64 0.8.2-1 [645 kB] Get:1768 http://deb.debian.org/debian stretch/main amd64 r-cran-adephylo amd64 1.1-10-2 [483 kB] Get:1769 http://deb.debian.org/debian stretch/main amd64 r-cran-numderiv all 2016.8-1-1 [111 kB] Get:1770 http://deb.debian.org/debian stretch/main amd64 r-cran-bbmle all 1.0.18-2 [607 kB] Get:1771 http://deb.debian.org/debian stretch/main amd64 r-cran-bio3d amd64 2.3-1-1 [2162 kB] Get:1772 http://deb.debian.org/debian stretch/main amd64 r-cran-combinat all 0.0-8-4 [29.7 kB] Get:1773 http://deb.debian.org/debian stretch/main amd64 r-cran-distory amd64 1.4.2-1 [81.4 kB] Get:1774 http://deb.debian.org/debian stretch/main amd64 r-cran-ellipse all 0.3-8-1 [48.1 kB] Get:1775 http://deb.debian.org/debian stretch/main amd64 r-cran-fastmatch amd64 1.0-4-1 [17.3 kB] Get:1776 http://deb.debian.org/debian stretch/main amd64 r-cran-spam amd64 1.4-0-1 [1829 kB] Get:1777 http://deb.debian.org/debian stretch/main amd64 r-cran-maps amd64 3.1.1-1 [2163 kB] Get:1778 http://deb.debian.org/debian stretch/main amd64 r-cran-fields amd64 8.10-1 [3602 kB] Get:1779 http://deb.debian.org/debian stretch/main amd64 r-cran-globals amd64 0.8.0-1 [52.3 kB] Get:1780 http://deb.debian.org/debian stretch/main amd64 r-cran-listenv amd64 0.6.0-1 [56.3 kB] Get:1781 http://deb.debian.org/debian stretch/main amd64 r-cran-future all 1.2.0-1 [234 kB] Get:1782 http://deb.debian.org/debian stretch/main amd64 r-cran-g.data all 2.4-1 [86.1 kB] Get:1783 http://deb.debian.org/debian stretch/main amd64 r-cran-genabel.data amd64 1.0.0-1 [2423 kB] Get:1784 http://deb.debian.org/debian stretch/main amd64 r-cran-genabel amd64 1.8-0-1+b1 [2876 kB] Get:1785 http://deb.debian.org/debian stretch/main amd64 r-cran-googlevis all 0.6.2-1 [1539 kB] Get:1786 http://deb.debian.org/debian stretch/main amd64 r-cran-htmlwidgets amd64 0.8-1 [381 kB] Get:1787 http://deb.debian.org/debian stretch/main amd64 r-cran-minpack.lm amd64 1.2-1-1 [68.8 kB] Get:1788 http://deb.debian.org/debian stretch/main amd64 r-cran-raster amd64 2.5-8-1 [2571 kB] Get:1789 http://deb.debian.org/debian stretch/main amd64 r-cran-readxl amd64 0.1.1-1+deb9u2 [198 kB] Get:1790 http://deb.debian.org/debian stretch/main amd64 r-cran-shape all 1.4.2-1 [739 kB] Get:1791 http://deb.debian.org/debian stretch/main amd64 r-cran-zoo amd64 1.7-14-1 [873 kB] Get:1792 http://deb.debian.org/debian stretch/main amd64 r-cran-luminescence amd64 0.6.4-1 [1686 kB] Get:1793 http://deb.debian.org/debian stretch/main amd64 r-cran-multicore amd64 0.2-1 [19.2 kB] Get:1794 http://deb.debian.org/debian stretch/main amd64 r-cran-optparse all 1.3.2-1 [60.0 kB] Get:1795 http://deb.debian.org/debian stretch/main amd64 r-cran-quadprog amd64 1.5-5-2 [31.2 kB] Get:1796 http://deb.debian.org/debian stretch/main amd64 r-cran-phangorn amd64 2.1.1-1 [2086 kB] Get:1797 http://deb.debian.org/debian stretch/main amd64 r-cran-r.methodss3 amd64 1.7.1-1 [59.9 kB] Get:1798 http://deb.debian.org/debian stretch/main amd64 r-cran-r.oo amd64 1.21.0-1 [763 kB] Get:1799 http://deb.debian.org/debian stretch/main amd64 r-cran-r.utils amd64 2.5.0-1 [966 kB] Get:1800 http://deb.debian.org/debian stretch/main amd64 r-cran-r.cache amd64 0.12.0-2 [77.0 kB] Get:1801 http://deb.debian.org/debian stretch/main amd64 r-cran-pscbs amd64 0.62.0-1 [3582 kB] Get:1802 http://deb.debian.org/debian stretch/main amd64 r-cran-qtl amd64 1.40-8-1 [4201 kB] Get:1803 http://deb.debian.org/debian stretch/main amd64 r-cran-randomforest amd64 4.6-12-1 [141 kB] Get:1804 http://deb.debian.org/debian stretch/main amd64 r-cran-rgl amd64 0.96.0-1 [2112 kB] Get:1805 http://deb.debian.org/debian stretch/main amd64 r-cran-rlumshiny amd64 0.1.1-1 [222 kB] Get:1806 http://deb.debian.org/debian stretch/main amd64 r-cran-scatterd3 all 0.8.1+dfsg-1 [167 kB] Get:1807 http://deb.debian.org/debian stretch/main amd64 r-cran-shinybs all 0.61-1 [88.8 kB] Get:1808 http://deb.debian.org/debian stretch/main amd64 r-cran-treescape amd64 1.10.18-6 [1955 kB] Get:1809 http://deb.debian.org/debian stretch/main amd64 r-doc-html all 3.3.3-1 [551 kB] Get:1810 http://deb.debian.org/debian stretch/main amd64 r-other-mott-happy.hbrem amd64 2.4-1 [145 kB] Get:1811 http://deb.debian.org/debian stretch/main amd64 rubygems-integration all 1.11 [4994 B] Get:1812 http://deb.debian.org/debian stretch/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:1813 http://deb.debian.org/debian stretch/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:1814 http://deb.debian.org/debian stretch/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:1815 http://deb.debian.org/debian stretch/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:1816 http://deb.debian.org/debian stretch/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:1817 http://deb.debian.org/debian stretch/main amd64 libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:1818 http://deb.debian.org/debian stretch/main amd64 ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:1819 http://deb.debian.org/debian stretch/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:1820 http://deb.debian.org/debian stretch/main amd64 rake all 10.5.0-2+deb9u1 [49.7 kB] Get:1821 http://deb.debian.org/debian stretch/main amd64 rambo-k all 1.21+dfsg-1 [1167 kB] Get:1822 http://deb.debian.org/debian stretch/main amd64 rapmap amd64 0.4.0+dfsg-2 [785 kB] Get:1823 http://deb.debian.org/debian stretch/main amd64 libcbf0 amd64 0.9.2.2-1+b1 [147 kB] Get:1824 http://deb.debian.org/debian stretch/main amd64 libcvector2 amd64 1.0.3.1-1.1+b2 [6058 B] Get:1825 http://deb.debian.org/debian stretch/main amd64 libcneartree5 amd64 3.1.1-2.1+b2 [24.0 kB] Get:1826 http://deb.debian.org/debian stretch/main amd64 libcqrlib2 amd64 1.1.2-2.1+b2 [13.9 kB] Get:1827 http://deb.debian.org/debian stretch/main amd64 rasmol amd64 2.7.5.2-2 [1688 kB] Get:1828 http://deb.debian.org/debian stretch/main amd64 raster3d amd64 3.0-3-2+b1 [168 kB] Get:1829 http://deb.debian.org/debian stretch/main amd64 rdp-readseq all 2.0.2-2 [446 kB] Get:1830 http://deb.debian.org/debian stretch/main amd64 rdp-alignment all 1.2.0-2 [77.5 kB] Get:1831 http://deb.debian.org/debian stretch/main amd64 rdp-classifier all 2.10.2-1 [220 kB] Get:1832 http://deb.debian.org/debian stretch/main amd64 rdp-classifier-doc all 2.10.2-1 [259 kB] Get:1833 http://deb.debian.org/debian stretch/main amd64 readseq amd64 1-11+b1 [56.1 kB] Get:1834 http://deb.debian.org/debian stretch/main amd64 snpomatic amd64 1.0-3+b1 [82.0 kB] Get:1835 http://deb.debian.org/debian stretch/main amd64 tabix amd64 1.3.2-2 [257 kB] Get:1836 http://deb.debian.org/debian stretch/main amd64 reapr amd64 1.0.18+dfsg-3 [226 kB] Get:1837 http://deb.debian.org/debian stretch/main amd64 relion-bin+gui amd64 1.4+dfsg-2+b2 [196 kB] Get:1838 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:1839 http://deb.debian.org/debian stretch/main amd64 repeatmasker-recon amd64 1.08-3+b1 [101 kB] Get:1840 http://deb.debian.org/debian stretch/main amd64 rhino all 1.7.7.1-1 [26.6 kB] Get:1841 http://deb.debian.org/debian stretch/main amd64 rna-star amd64 2.5.2b+dfsg-1 [366 kB] Get:1842 http://deb.debian.org/debian stretch/main amd64 rnahybrid amd64 2.1.2-1+b1 [159 kB] Get:1843 http://deb.debian.org/debian stretch/main amd64 roary all 3.8.0+dfsg-1 [170 kB] Get:1844 http://deb.debian.org/debian stretch/main amd64 rsem amd64 1.2.31+dfsg-1 [765 kB] Get:1845 http://deb.debian.org/debian stretch/main amd64 rtax all 0.984-5 [26.1 kB] Get:1846 http://deb.debian.org/debian stretch/main amd64 saint amd64 2.5.0+dfsg-2+b1 [88.5 kB] Get:1847 http://deb.debian.org/debian stretch/main amd64 libjs-modernizr all 2.6.2+ds1-1 [71.3 kB] Get:1848 http://deb.debian.org/debian stretch/main amd64 sphinx-rtd-theme-common all 0.1.9-1 [210 kB] Get:1849 http://deb.debian.org/debian stretch/main amd64 salmon amd64 0.7.2+ds1-2+b1 [1622 kB] Get:1850 http://deb.debian.org/debian stretch/main amd64 scrm amd64 1.7.2-1+b1 [62.3 kB] Get:1851 http://deb.debian.org/debian stretch/main amd64 scythe amd64 0.994-4 [18.2 kB] Get:1852 http://deb.debian.org/debian stretch/main amd64 seaview amd64 1:4.6.1.2-2 [339 kB] Get:1853 http://deb.debian.org/debian stretch/main amd64 seer amd64 1.1.2-3 [398 kB] Get:1854 http://deb.debian.org/debian stretch/main amd64 seqprep amd64 1.3.2-1 [27.8 kB] Get:1855 http://deb.debian.org/debian stretch/main amd64 sga amd64 0.10.15-2 [1008 kB] Get:1856 http://deb.debian.org/debian stretch/main amd64 sibsim4 amd64 0.20-2+b1 [30.3 kB] Get:1857 http://deb.debian.org/debian stretch/main amd64 sickle amd64 1.33-1+b1 [18.2 kB] Get:1858 http://deb.debian.org/debian stretch/main amd64 sigma-align amd64 1.1.3-4+b1 [24.3 kB] Get:1859 http://deb.debian.org/debian stretch/main amd64 sim4 amd64 0.0.20121010-4 [396 kB] Get:1860 http://deb.debian.org/debian stretch/main amd64 smithwaterman amd64 0.0+20160702-1+b1 [9036 B] Get:1861 http://deb.debian.org/debian stretch/main amd64 smrtanalysis all 0~20161126 [2518 B] Get:1862 http://deb.debian.org/debian stretch/main amd64 snap-aligner amd64 1.0~beta.18+dfsg-1 [1617 kB] Get:1863 http://deb.debian.org/debian stretch/main amd64 sniffles amd64 1.0.2+ds-1 [146 kB] Get:1864 http://deb.debian.org/debian stretch/main amd64 snp-sites amd64 2.3.2-1 [10.3 kB] Get:1865 http://deb.debian.org/debian stretch/main amd64 soapdenovo amd64 1.05-3 [343 kB] Get:1866 http://deb.debian.org/debian stretch/main amd64 soapdenovo2 amd64 240+dfsg1-2 [450 kB] Get:1867 http://deb.debian.org/debian stretch/main amd64 sortmerna amd64 2.1-1+b1 [537 kB] Get:1868 http://deb.debian.org/debian stretch/main amd64 spaced amd64 1.0.2+dfsg-1+b1 [49.3 kB] Get:1869 http://deb.debian.org/debian stretch/main amd64 sprai amd64 0.9.9.22+dfsg-1 [1513 kB] Get:1870 http://deb.debian.org/debian stretch/main amd64 spread-phy all 1.0.7+dfsg-1 [3313 kB] Get:1871 http://deb.debian.org/debian stretch/main amd64 squizz amd64 0.99c+dfsg-1 [31.2 kB] Get:1872 http://deb.debian.org/debian stretch/main amd64 sra-toolkit amd64 2.8.1-2+dfsg-2 [1487 kB] Get:1873 http://deb.debian.org/debian stretch/main amd64 srst2 amd64 0.2.0-4 [60.5 kB] Get:1874 http://deb.debian.org/debian stretch/main amd64 ssake all 3.8.4-1 [30.1 kB] Get:1875 http://deb.debian.org/debian stretch/main amd64 ssl-cert all 1.0.39 [20.8 kB] Get:1876 http://deb.debian.org/debian stretch/main amd64 sspace all 2.1.1+dfsg-2 [1339 kB] Get:1877 http://deb.debian.org/debian stretch/main amd64 ssw-align amd64 1.1-1+b1 [12.8 kB] Get:1878 http://deb.debian.org/debian stretch/main amd64 stacks amd64 1.44-2+b1 [1031 kB] Get:1879 http://deb.debian.org/debian stretch/main amd64 tk8.6 amd64 8.6.6-1+b1 [71.8 kB] Get:1880 http://deb.debian.org/debian stretch/main amd64 tcl8.6 amd64 8.6.6+dfsg-1+b1 [123 kB] Get:1881 http://deb.debian.org/debian stretch/main amd64 tcl amd64 8.6.0+9 [5468 B] Get:1882 http://deb.debian.org/debian stretch/main amd64 tk amd64 8.6.0+9 [5506 B] Get:1883 http://deb.debian.org/debian stretch/main amd64 staden-common all 2.0.0+b11-2 [1973 kB] Get:1884 http://deb.debian.org/debian stretch/main amd64 staden-io-lib-utils amd64 1.14.8-2 [250 kB] Get:1885 http://deb.debian.org/debian stretch/main amd64 tklib all 0.6-3 [1022 kB] Get:1886 http://deb.debian.org/debian stretch/main amd64 staden amd64 2.0.0+b11-2+b1 [1614 kB] Get:1887 http://deb.debian.org/debian stretch/main amd64 subread amd64 1.5.1+dfsg-4 [570 kB] Get:1888 http://deb.debian.org/debian stretch/main amd64 suitename amd64 0.3.070628-1+b1 [21.3 kB] Get:1889 http://deb.debian.org/debian stretch/main amd64 sumaclust amd64 1.0.20-1+b1 [114 kB] Get:1890 http://deb.debian.org/debian stretch/main amd64 sumatra amd64 1.0.20-1+b1 [98.8 kB] Get:1891 http://deb.debian.org/debian stretch/main amd64 sumtrees all 4.2.0+dfsg-1 [27.3 kB] Get:1892 http://deb.debian.org/debian stretch/main amd64 surankco all 0.0.r5+dfsg-1 [76.7 kB] Get:1893 http://deb.debian.org/debian stretch/main amd64 swarm amd64 2.1.12+dfsg-1 [72.1 kB] Get:1894 http://deb.debian.org/debian stretch/main amd64 t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:1895 http://deb.debian.org/debian stretch/main amd64 tantan amd64 13-4 [36.1 kB] Get:1896 http://deb.debian.org/debian stretch/main amd64 tcllib all 1.18-dfsg-3 [4149 kB] Get:1897 http://deb.debian.org/debian stretch/main amd64 tcpd amd64 7.6.q-26 [23.3 kB] Get:1898 http://deb.debian.org/debian stretch/main amd64 tex-gyre all 20160520-1 [5000 kB] Get:1899 http://deb.debian.org/debian stretch/main amd64 texlive-extra-utils all 2016.20170123-5 [19.8 MB] Get:1900 http://deb.debian.org/debian stretch/main amd64 texlive-font-utils all 2016.20170123-5 [1736 kB] Get:1901 http://deb.debian.org/debian stretch/main amd64 fonts-stix all 1.1.1-4 [590 kB] Get:1902 http://deb.debian.org/debian stretch/main amd64 ttf-adf-accanthis all 0.20090423-2 [401 kB] Get:1903 http://deb.debian.org/debian stretch/main amd64 ttf-adf-gillius all 0.20090423-2 [400 kB] Get:1904 http://deb.debian.org/debian stretch/main amd64 ttf-adf-universalis all 0.20090423-2 [221 kB] Get:1905 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-extra all 2016.20170123-5 [256 MB] Get:1906 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-extra-doc all 2016.20170123-5 [82.5 MB] Get:1907 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-recommended all 2016.20170123-5 [5307 kB] Get:1908 http://deb.debian.org/debian stretch/main amd64 texlive-fonts-recommended-doc all 2016.20170123-5 [2660 kB] Get:1909 http://deb.debian.org/debian stretch/main amd64 texlive-generic-extra all 2016.20170123-5 [14.9 MB] Get:1910 http://deb.debian.org/debian stretch/main amd64 texlive-latex-base-doc all 2016.20170123-5 [45.6 MB] Get:1911 http://deb.debian.org/debian stretch/main amd64 texlive-latex-extra all 2016.20170123-5 [10.6 MB] Get:1912 http://deb.debian.org/debian stretch/main amd64 texlive-latex-extra-doc all 2016.20170123-5 [364 MB] Get:1913 http://deb.debian.org/debian stretch/main amd64 texlive-latex-recommended-doc all 2016.20170123-5 [40.6 MB] Get:1914 http://deb.debian.org/debian stretch/main amd64 texlive-pictures-doc all 2016.20170123-5 [105 MB] Get:1915 http://deb.debian.org/debian stretch/main amd64 texlive-pstricks-doc all 2016.20170123-5 [238 MB] Get:1916 http://deb.debian.org/debian stretch/main amd64 texlive-science all 2016.20170123-5 [3043 kB] Get:1917 http://deb.debian.org/debian stretch/main amd64 texlive-science-doc all 2016.20170123-5 [46.3 MB] Get:1918 http://deb.debian.org/debian stretch/main amd64 theseus amd64 3.3.0-5+b1 [432 kB] Get:1919 http://deb.debian.org/debian stretch/main amd64 tigr-glimmer amd64 3.02b-1 [283 kB] Get:1920 http://deb.debian.org/debian stretch/main amd64 tipa all 2:1.3-20 [2972 kB] Get:1921 http://deb.debian.org/debian stretch/main amd64 tm-align amd64 20160521+dfsg-2 [868 kB] Get:1922 http://deb.debian.org/debian stretch/main amd64 toppred amd64 1.10-4 [61.9 kB] Get:1923 http://deb.debian.org/debian stretch/main amd64 transdecoder all 3.0.1+dfsg-1 [62.8 kB] Get:1924 http://deb.debian.org/debian stretch/main amd64 transrate-tools amd64 1.0.0-1+b1 [16.6 kB] Get:1925 http://deb.debian.org/debian stretch/main amd64 transtermhp amd64 2.09-3+b1 [131 kB] Get:1926 http://deb.debian.org/debian stretch/main amd64 tree-puzzle amd64 5.2-8+b3 [135 kB] Get:1927 http://deb.debian.org/debian stretch/main amd64 tree-puzzle-doc all 5.2-8 [401 kB] Get:1928 http://deb.debian.org/debian stretch/main amd64 treeview all 1.1.6.4+dfsg1-2 [2720 kB] Get:1929 http://deb.debian.org/debian stretch/main amd64 treeviewx amd64 0.5.1+20100823-4 [182 kB] Get:1930 http://deb.debian.org/debian stretch/main amd64 trimmomatic all 0.36+dfsg-1 [116 kB] Get:1931 http://deb.debian.org/debian stretch/main amd64 trinityrnaseq amd64 2.2.0+dfsg-2+b1 [1748 kB] Get:1932 http://deb.debian.org/debian stretch/main amd64 trinityrnaseq-examples all 2.2.0+dfsg-2 [154 MB] Get:1933 http://deb.debian.org/debian stretch/main amd64 uc-echo amd64 1.12-9+b1 [76.7 kB] Get:1934 http://deb.debian.org/debian stretch/main amd64 varna all 3-93+ds-1 [761 kB] Get:1935 http://deb.debian.org/debian stretch/main amd64 velvet amd64 1.2.10+dfsg1-3+b1 [688 kB] Get:1936 http://deb.debian.org/debian stretch/main amd64 velvetoptimiser all 2.2.5-5 [25.1 kB] Get:1937 http://deb.debian.org/debian stretch/main amd64 vsearch amd64 2.3.4-1 [257 kB] Get:1938 http://deb.debian.org/debian stretch/main amd64 wise-data all 2.4.1-19 [108 kB] Get:1939 http://deb.debian.org/debian stretch/main amd64 wise amd64 2.4.1-19 [993 kB] Get:1940 http://deb.debian.org/debian stretch/main amd64 x11-xserver-utils amd64 7.7+7+b1 [167 kB] Get:1941 http://deb.debian.org/debian stretch/main amd64 xbitmaps all 1.1.1-2 [32.1 kB] Get:1942 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:1943 http://deb.debian.org/debian stretch/main amd64 xfonts-encodings all 1:1.0.4-2 [574 kB] Get:1944 http://deb.debian.org/debian stretch/main amd64 xfonts-utils amd64 1:7.7+4 [77.2 kB] Get:1945 http://deb.debian.org/debian stretch/main amd64 xfonts-100dpi all 1:1.0.4+nmu1 [3822 kB] Get:1946 http://deb.debian.org/debian stretch/main amd64 xsltproc amd64 1.1.29-2.1+deb9u2 [120 kB] Get:1947 http://deb.debian.org/debian stretch/main amd64 xterm amd64 327-2 [663 kB] Get:1948 http://deb.debian.org/debian stretch/main amd64 zalign amd64 0.9.1-2+b3 [48.6 kB] Get:1949 http://deb.debian.org/debian stretch/main amd64 acedb-other amd64 4.9.39+dfsg.02-1 [16.8 kB] Get:1950 http://deb.debian.org/debian stretch/main amd64 acedb-other-belvu amd64 4.9.39+dfsg.02-1 [188 kB] Get:1951 http://deb.debian.org/debian stretch/main amd64 acedb-other-dotter amd64 4.9.39+dfsg.02-1 [208 kB] Get:1952 http://deb.debian.org/debian stretch/main amd64 ampliconnoise amd64 1.29-6 [476 kB] Get:1953 http://deb.debian.org/debian stretch/main amd64 astro-tasks all 1.0 [10.8 kB] Get:1954 http://deb.debian.org/debian stretch/main amd64 autodock-vina amd64 1.1.2-3+b6 [175 kB] Get:1955 http://deb.debian.org/debian stretch/main amd64 python-gdata all 2.0.18+dfsg1-2 [358 kB] Get:1956 http://deb.debian.org/debian stretch/main amd64 bauble all 0.9.7-2.1 [577 kB] Get:1957 http://deb.debian.org/debian stretch/main amd64 concavity amd64 0.1+dfsg.1-1 [295 kB] Get:1958 http://deb.debian.org/debian stretch/main amd64 conservation-code all 20110309.0-5 [23.6 kB] Get:1959 http://deb.debian.org/debian stretch/main amd64 critterding amd64 1.0-beta12.1-1.3+b1 [730 kB] Get:1960 http://deb.debian.org/debian stretch/main amd64 datamash amd64 1.0.7-1 [744 kB] Get:1961 http://deb.debian.org/debian stretch/main amd64 debichem-tasks all 0.0.6 [3750 B] Get:1962 http://deb.debian.org/debian stretch/main amd64 disulfinder-data all 1.2.11-6 [1129 kB] Get:1963 http://deb.debian.org/debian stretch/main amd64 disulfinder amd64 1.2.11-6 [261 kB] Get:1964 http://deb.debian.org/debian stretch/main amd64 edtsurf amd64 0.2009-4+b1 [59.1 kB] Get:1965 http://deb.debian.org/debian stretch/main amd64 libffindex0 amd64 0.9.9.7-3 [16.7 kB] Get:1966 http://deb.debian.org/debian stretch/main amd64 ffindex amd64 0.9.9.7-3 [29.6 kB] Get:1967 http://deb.debian.org/debian stretch/main amd64 freecontact amd64 1.0.21-5 [335 kB] Get:1968 http://deb.debian.org/debian stretch/main amd64 gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:1969 http://deb.debian.org/debian stretch/main amd64 gromacs-data all 2016.1-2 [22.1 MB] Get:1970 http://deb.debian.org/debian stretch/main amd64 libgromacs2 amd64 2016.1-2 [11.3 MB] Get:1971 http://deb.debian.org/debian stretch/main amd64 gromacs amd64 2016.1-2 [234 kB] Get:1972 http://deb.debian.org/debian stretch/main amd64 hhsuite-data all 3.0~beta2+dfsg-3 [2164 kB] Get:1973 http://deb.debian.org/debian stretch/main amd64 hhsuite amd64 3.0~beta2+dfsg-3 [1005 kB] Get:1974 http://deb.debian.org/debian stretch/main amd64 libconfig-inifiles-perl all 2.94-1 [53.4 kB] Get:1975 http://deb.debian.org/debian stretch/main amd64 libev-perl amd64 4.22-1+b1 [240 kB] Get:1976 http://deb.debian.org/debian stretch/main amd64 librg-reprof-bundle-perl all 1.0.1-4 [7479 kB] Get:1977 http://deb.debian.org/debian stretch/main amd64 profphd-utils amd64 1.0.10-3+b1 [264 kB] Get:1978 http://deb.debian.org/debian stretch/main amd64 librg-utils-perl all 1.0.43-4 [111 kB] Get:1979 http://deb.debian.org/debian stretch/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:1980 http://deb.debian.org/debian stretch/main amd64 libtxc-dxtn-s2tc amd64 1.0+git20151227-2 [48.4 kB] Get:1981 http://deb.debian.org/debian stretch/main amd64 lynx amd64 2.8.9dev11-1 [632 kB] Get:1982 http://deb.debian.org/debian stretch/main amd64 med-tasks all 3.0.1 [14.3 kB] Get:1983 http://deb.debian.org/debian stretch/main amd64 med-config all 3.0.1 [17.1 kB] Get:1984 http://deb.debian.org/debian stretch/main amd64 med-bio all 3.0.1 [18.7 kB] Get:1985 http://deb.debian.org/debian stretch/main amd64 ncbi-seg amd64 0.0.20000620-3+b1 [78.7 kB] Get:1986 http://deb.debian.org/debian stretch/main amd64 neobio all 0.0.20030929-2 [291 kB] Get:1987 http://deb.debian.org/debian stretch/main amd64 profnet-norsnet amd64 1.0.22-4 [43.0 kB] Get:1988 http://deb.debian.org/debian stretch/main amd64 norsnet all 1.0.17-2 [44.4 kB] Get:1989 http://deb.debian.org/debian stretch/main amd64 norsp all 1.0.6-2 [283 kB] Get:1990 http://deb.debian.org/debian stretch/main amd64 populations amd64 1.2.33+svn0120106-2.1+b1 [186 kB] Get:1991 http://deb.debian.org/debian stretch/main amd64 pp-popularity-contest amd64 1.0.6-2+b4 [33.3 kB] Get:1992 http://deb.debian.org/debian stretch/main amd64 predictnls all 1.0.20-3 [1404 kB] Get:1993 http://deb.debian.org/debian stretch/main amd64 profnet-bval amd64 1.0.22-4 [43.8 kB] Get:1994 http://deb.debian.org/debian stretch/main amd64 profbval all 1.0.22-4 [60.5 kB] Get:1995 http://deb.debian.org/debian stretch/main amd64 profnet-isis amd64 1.0.22-4 [105 kB] Get:1996 http://deb.debian.org/debian stretch/main amd64 profisis all 1.0.11-3 [63.2 kB] Get:1997 http://deb.debian.org/debian stretch/main amd64 profnet-chop amd64 1.0.22-4 [105 kB] Get:1998 http://deb.debian.org/debian stretch/main amd64 profnet-con amd64 1.0.22-4 [105 kB] Get:1999 http://deb.debian.org/debian stretch/main amd64 profnet-md amd64 1.0.22-4 [43.0 kB] Get:2000 http://deb.debian.org/debian stretch/main amd64 profnet-prof amd64 1.0.22-4 [105 kB] Get:2001 http://deb.debian.org/debian stretch/main amd64 profnet-snapfun amd64 1.0.22-4 [105 kB] Get:2002 http://deb.debian.org/debian stretch/main amd64 profphd-net amd64 1.0.22-4 [141 kB] Get:2003 http://deb.debian.org/debian stretch/main amd64 proftmb amd64 1.1.12-6+b1 [396 kB] Get:2004 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] Get:2005 http://deb.debian.org/debian stretch/main amd64 pvm amd64 3.4.6-1+b2 [167 kB] Get:2006 http://deb.debian.org/debian stretch/main amd64 pynast all 1.2.2-2 [83.5 kB] Get:2007 http://deb.debian.org/debian stretch/main amd64 python-cogent amd64 1.9-9 [1063 kB] Get:2008 http://deb.debian.org/debian stretch/main amd64 python-mpi4py amd64 2.0.0-2.1+deb9u1 [425 kB] Get:2009 http://deb.debian.org/debian stretch/main amd64 python-statsmodels-lib amd64 0.8.0~rc1+git59-gef47cd9-5 [291 kB] Get:2010 http://deb.debian.org/debian stretch/main amd64 python-statsmodels all 0.8.0~rc1+git59-gef47cd9-5 [3312 kB] Get:2011 http://deb.debian.org/debian stretch/main amd64 python3-scipy amd64 0.18.1-2 [8534 kB] Get:2012 http://deb.debian.org/debian stretch/main amd64 r-base-html all 3.3.3-1 [85.9 kB] Get:2013 http://deb.debian.org/debian stretch/main amd64 rate4site amd64 3.0.0-4+b1 [648 kB] Get:2014 http://deb.debian.org/debian stretch/main amd64 ray amd64 2.3.1-4+b1 [594 kB] Get:2015 http://deb.debian.org/debian stretch/main amd64 reprof all 1.0.1-4 [17.8 kB] Get:2016 http://deb.debian.org/debian stretch/main amd64 science-tasks all 1.7 [17.4 kB] Get:2017 http://deb.debian.org/debian stretch/main amd64 science-config all 1.7 [18.7 kB] Get:2018 http://deb.debian.org/debian stretch/main amd64 science-biology all 1.7 [16.4 kB] Get:2019 http://deb.debian.org/debian stretch/main amd64 snap amd64 2013-11-29-6 [373 kB] Get:2020 http://deb.debian.org/debian stretch/main amd64 vcftools amd64 0.1.14+dfsg-4+deb9u1 [458 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3556 MB in 7min 36s (7789 kB/s) Selecting previously unselected package lsb-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) ... Selecting previously unselected package cron. Preparing to unpack .../01-cron_3.0pl1-128+deb9u1_amd64.deb ... Unpacking cron (3.0pl1-128+deb9u1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../02-liblocale-gettext-perl_1.07-3+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b1) ... Selecting previously unselected package tasksel-data. Preparing to unpack .../03-tasksel-data_3.39_all.deb ... Unpacking tasksel-data (3.39) ... Selecting previously unselected package tasksel. Preparing to unpack .../04-tasksel_3.39_all.deb ... Unpacking tasksel (3.39) ... Selecting previously unselected package groff-base. Preparing to unpack .../05-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../06-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../07-libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../08-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... 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Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../15-libpython2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../16-python2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2+deb9u3) ... Selecting previously unselected package python-minimal. Preparing to unpack .../17-python-minimal_2.7.13-2_amd64.deb ... Unpacking python-minimal (2.7.13-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../18-mime-support_3.60_all.deb ... Unpacking mime-support (3.60) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../19-libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../20-libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../21-readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../22-libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../23-libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../24-libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../25-libpython2.7-stdlib_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Selecting previously unselected package python2.7. Preparing to unpack .../26-python2.7_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7 (2.7.13-2+deb9u3) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../27-libpython-stdlib_2.7.13-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.13-2) ... Setting up libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7-minimal (2.7.13-2+deb9u3) ... Setting up python-minimal (2.7.13-2) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7845 files and directories currently installed.) Preparing to unpack .../00-python_2.7.13-2_amd64.deb ... Unpacking python (2.7.13-2) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../01-libprocps6_2%3a3.3.12-3+deb9u1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a3.3.12-3+deb9u1_amd64.deb ... 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Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Unpacking parallel (20161222-1) ... Selecting previously unselected package last-align. Preparing to unpack .../0876-last-align_830-1_amd64.deb ... Unpacking last-align (830-1) ... Selecting previously unselected package lefse. Preparing to unpack .../0877-lefse_1.0+20160802-1_all.deb ... Unpacking lefse (1.0+20160802-1) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../0878-liberror-perl_0.17024-1_all.deb ... Unpacking liberror-perl (0.17024-1) ... Selecting previously unselected package libipc-sharelite-perl. Preparing to unpack .../0879-libipc-sharelite-perl_0.17-4_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-4) ... Selecting previously unselected package libcache-cache-perl. Preparing to unpack .../0880-libcache-cache-perl_1.08-2_all.deb ... 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Adding 'diversion of /usr/bin/efetch to /usr/bin/efetch.acedb by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/efetch.1.gz to /usr/share/man/man1/efetch.acedb.1.gz by ncbi-entrez-direct' Adding 'diversion of /usr/bin/einfo to /usr/bin/einfo.epub by ncbi-entrez-direct' Adding 'diversion of /usr/share/man/man1/einfo.1.gz to /usr/share/man/man1/einfo.epub.1.gz by ncbi-entrez-direct' Unpacking ncbi-entrez-direct (6.10.20170123+ds-1) ... Selecting previously unselected package ncbi-epcr. Preparing to unpack .../1274-ncbi-epcr_2.3.12-1-4_amd64.deb ... Unpacking ncbi-epcr (2.3.12-1-4) ... Selecting previously unselected package ncbi-tools-bin. Preparing to unpack .../1275-ncbi-tools-bin_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... Unpacking ncbi-tools-bin (6.1.20170106+dfsg1-0+deb9u1) ... Selecting previously unselected package ncbi-tools-x11. Preparing to unpack .../1276-ncbi-tools-x11_6.1.20170106+dfsg1-0+deb9u1_amd64.deb ... 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Setting up libsuitesparseconfig4:amd64 (1:4.5.4-1) ... Setting up menu (2.1.47+b1) ... Setting up concavity (0.1+dfsg.1-1) ... Setting up apache2-data (2.4.25-3+deb9u9) ... Setting up ncbi-epcr (2.3.12-1-4) ... Setting up libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Setting up libcommons-collections4-java (4.1-1) ... Setting up tree-puzzle (5.2-8+b3) ... Setting up dascrubber (0~20160601-2) ... Setting up python-tables-data (3.3.0-5) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up gettext-base (0.19.8.1-2+deb9u1) ... Setting up fonts-freefont-otf (20120503-6) ... Setting up libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/s2tc/libtxc_dxtn.so to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode Setting up libgif7:amd64 (5.1.4-0.4) ... Setting up libffindex0 (0.9.9.7-3) ... Setting up snap (2013-11-29-6) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up dawg (1.2-1+b1) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... Setting up libglapi-mesa:amd64 (13.0.6-1+b2) ... Setting up fonts-texgyre (20160520-1) ... Setting up plast (2.3.1+dfsg-4) ... Setting up massxpert-data (3.6.1-1) ... Setting up sniffles (1.0.2+ds-1) ... Setting up libjs-mootools (1.4.5~debian1-2.1) ... Setting up python-biopython-doc (1.68+dfsg-3) ... Setting up lua-md5:amd64 (1.2+git+1+8d87fee-1) ... Setting up libgsl2:amd64 (2.3+dfsg-1) ... Setting up kmc (2.3+dfsg-5) ... Setting up m4 (1.4.18-1) ... Setting up sgml-base (1.29) ... Setting up libcommons-math3-java (3.6.1-2) ... Setting up filo (1.1.0-3+b1) ... Setting up libmaloc1 (0.2-3.1) ... Setting up fonts-crosextra-carlito (20130920-1) ... Setting up libtre5:amd64 (0.8.0-6) ... Setting up libfftw3-double3:amd64 (3.3.5-3) ... Setting up libcdparanoia0:amd64 (3.10.2+debian-11) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libcqrlib2:amd64 (1.1.2-2.1+b2) ... Setting up fonts-liberation (1:1.07.4-2) ... Setting up libjs-es5-shim (4.5.9-1) ... Setting up gnustep-common (2.6.8-2.1) ... Setting up python-backports-shutil-get-terminal-size (1.0.0-3) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Setting up laptop-detect (0.13.8) ... Setting up libnspr4:amd64 (2:4.12-6) ... Setting up ucf (3.0036) ... Setting up libjbzip2-java (0.9.1-3) ... Setting up xfonts-encodings (1:1.0.4-2) ... Setting up fonts-ebgaramond-extra (0.016-1) ... Setting up mira-rfam-12s-rrna (4.9.6-2) ... Will install rfam_rrna-21-12 with kmer size 21 as MIRA default rRNA filter in /usr/bin/../share/mira/mhs Installing. This can take a minute or two, please be patient. Done. MIRA can now use the functionality to filter for rRNA during assemblies. MIRABAIT can now use the '-j rrna' option. Setting up fonts-font-awesome (4.7.0~dfsg-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libutempter0:amd64 (1.1.6-3) ... Setting up zip (3.0-11+b1) ... Setting up tm-align (20160521+dfsg-2) ... Setting up fonts-junicode (0.7.8-2) ... Setting up libjxr0:amd64 (1.1-6+b1) ... Setting up dssp (2.2.1-3+b2) ... Setting up libngs-sdk1 (1.3.0-2) ... Setting up libvcflib1 (1.0.0~rc1+dfsg1-3) ... Setting up libopus0:amd64 (1.2~alpha2-1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up fonts-noto-mono (20161116-1) ... Setting up libjs-d3 (3.5.17-2) ... Setting up gnupg-l10n (2.1.18-8~deb9u4) ... Setting up libwxbase3.0-0v5:amd64 (3.0.2+dfsg-4) ... Setting up libasound2:amd64 (1.1.3-5) ... Setting up libtamuanova-0.2 (0.2-4) ... Setting up libibatis-java (2.3.4.726-6) ... Setting up libdrm2:amd64 (2.4.74-1) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libncl1 (2.1.18+dfsg-2+b1) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up fastml (3.1-3) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up adapterremoval (2.2.0-1) ... Setting up rsync (3.1.2-1+deb9u2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up liblsan0:amd64 (6.3.0-18+deb9u1) ... Setting up procps (2:3.3.12-3+deb9u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up gwama (2.2.2+dfsg-1) ... Setting up fonts-lato (2.0-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Setting up fsm-lite (1.0-2) ... Setting up sim4 (0.0.20121010-4) ... Setting up soapdenovo2 (240+dfsg1-2) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up raxml (8.2.9+dfsg-1+b1) ... Setting up libjsr305-java (0.1~+svn49-10) ... Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libprotobuf10:amd64 (3.0.0-9) ... Setting up cdbfasta (0.99-20100722-3) ... Setting up lambda-align (1.0.1-2) ... Setting up amap-align (2.2-6) ... Setting up profnet-isis (1.0.22-4) ... Setting up libjs-json (0~20160510-1) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libball1.4-data (1.4.3~beta1-3) ... Setting up libenv-path-perl (0.19-1) ... Setting up libfile-chdir-perl (0.1008-1) ... Setting up libsys-hostname-long-perl (1.5-1) ... Setting up acedb-other (4.9.39+dfsg.02-1) ... Setting up libjline-java (1.0-2) ... Setting up fonts-gfs-complutum (1.1-6) ... Setting up libfile-fcntllock-perl (0.22-3+b2) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up plink (1.07-7) ... Setting up scythe (0.994-4) ... Setting up fonts-cabin (1.5-2) ... Setting up paraclu (9-1+b2) ... Setting up libilmbase12:amd64 (2.2.0-12) ... 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Setting up libnb-org-openide-util-lookup-java (8.1+dfsg1-5) ... Setting up libservlet3.1-java (8.5.54-0+deb9u1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up soapdenovo (1.05-3) ... Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up patch (2.7.5-1+deb9u2) ... Setting up proda (1.0-10) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up libngs-sdk-dev (1.3.0-2) ... Setting up libreadonly-perl (2.050-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libvecmath-java (1.5.2-5) ... Setting up varna (3-93+ds-1) ... Setting up libunwind8 (1.1-4.1) ... Setting up libmail-sendmail-perl (0.79.16-2) ... Setting up indelible (1.03-2+b1) ... Setting up libminimap0 (0.2-3+b1) ... Setting up libcarp-always-perl (0.12-1) ... Setting up fonts-crosextra-caladea (20130214-1) ... Setting up krb5-locales (1.15-1+deb9u1) ... Setting up libxz-java (1.6-1) ... Setting up openmpi-common (2.0.2-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up ttf-adf-gillius (0.20090423-2) ... Setting up seqprep (1.3.2-1) ... Setting up wise-data (2.4.1-19) ... Setting up libavalon-framework-java (4.2.0-9) ... Setting up phyutility (2.7.3-1) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up harvest-tools (1.3-1) ... Setting up libbsd-resource-perl (1.2910-1+b1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up publicsuffix (20190415.1030-0+deb9u1) ... Setting up libepoxy0:amd64 (1.3.1-2) ... Setting up fasttree (2.1.9-1) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up bzip2-doc (1.0.6-8.1) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Setting up libgetopt-euclid-perl (0.4.5-2) ... Setting up tantan (13-4) ... Setting up fonts-noto-hinted (20161116-1) ... Setting up garli (2.1-1) ... 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Setting up python-babel-localedata (2.3.4+dfsg.1-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up libf2j-java (0.8.1+dfsg-2) ... Setting up fonts-ebgaramond (0.016-1) ... Setting up libscalar-list-utils-perl (1:1.47-1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libmuscle-3.7-1 (3.7+4565-2) ... Setting up snpomatic (1.0-3+b1) ... Setting up libpvm3:amd64 (3.4.6-1+b2) ... Setting up piler (0~20140707-1+b1) ... Setting up libqes0 (0.2.7-1) ... Setting up libgetopt-simple-perl (1.52-5) ... Setting up libmtdev1:amd64 (1.1.5-1+b1) ... Setting up libtablelayout-java (20090826-3) ... Setting up libapache-pom-java (10-2) ... Setting up ncbi-seg (0.0.20000620-3+b1) ... Setting up docutils-doc (0.13.1+dfsg-2) ... Setting up f2j (0.8.1+dfsg-2) ... Setting up libfml0 (0.1-2+b1) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libvte-common (1:0.28.2-5) ... Setting up glam2 (1064-3+b1) ... Setting up ruby-net-telnet (0.1.1-2) ... 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Setting up libfribidi0:amd64 (0.19.7-1+deb9u1) ... Setting up liblocale-gettext-perl (1.07-3+b1) ... Setting up probalign (1.4-5) ... Setting up libncbi-wvdb2 (2.8.1+dfsg-2) ... Setting up libitext1-java (1.4-6) ... Setting up libclone-perl (0.38-2+b1) ... Setting up ncl-tools (2.1.18+dfsg-2+b1) ... Setting up miniasm (0.2+dfsg-2+b1) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up profnet-snapfun (1.0.22-4) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up icedtea-netx-common (1.6.2-3.1+deb9u1) ... Setting up libfftw3-single3:amd64 (3.3.5-3) ... Setting up python-sympy-doc (1.0-3) ... Setting up libpotrace0 (1.13-3) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up libmopac7-1gf (1.15-6+b1) ... Setting up libx11-protocol-perl (0.56-7) ... Setting up flexbar (2.50-2+b1) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up kraken (0.10.5~beta-2+b1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libxkbcommon0:amd64 (0.7.1-2~deb9u1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-3) ... Setting up libpcre32-3:amd64 (2:8.39-3) ... Setting up libatinject-jsr330-api-java (1.0+ds1-2) ... Setting up libnet-http-perl (6.12-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up rtax (0.984-5) ... Setting up librhino-java (1.7.7.1-1) ... Setting up nast-ier (20101212+dfsg1-1+b1) ... Setting up libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Setting up snap-aligner (1.0~beta.18+dfsg-1) ... Setting up libmpc3:amd64 (1.0.3-1+b2) ... Setting up pirs-profiles (2.0.2+dfsg-5.1) ... Setting up libbambamc0 (0.0.50-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up libtest-pod-perl (1.51-1) ... Setting up poa (2.0+20060928-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up binutils (2.28-5) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up andi (0.10-2) ... Setting up cpp-6 (6.3.0-18+deb9u1) ... Setting up libtext-format-perl (0.60-1) ... Setting up icu-devtools (57.1-6+deb9u4) ... Setting up libtext-charwidth-perl (0.04-7+b5) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libjs-bootstrap (3.3.7+dfsg-2+deb9u2) ... Setting up libgraphics-colornames-perl (2.11-7.1) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libdrm-radeon1:amd64 (2.4.74-1) ... Setting up fonts-gfs-didot (1.1-6) ... Setting up aglfn (1.7-3) ... Setting up parsinsert (1.04-2) ... Setting up liborc-0.4-0:amd64 (1:0.4.26-2) ... Setting up libpcre16-3:amd64 (2:8.39-3) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up profnet-chop (1.0.22-4) ... Setting up libthai-data (0.1.26-1) ... Setting up liberfa1:amd64 (1.3.0-2) ... Setting up liblzma-dev:amd64 (5.2.2-1.2+b1) ... Setting up scrm (1.7.2-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up javascript-common (11) ... Package apache2 is not configured yet. Will defer actions by package javascript-common. Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up tree-puzzle-doc (5.2-8) ... Setting up libgflags2v5 (2.1.2-4) ... Setting up libsquizz (0.99c+dfsg-1) ... Setting up libmems-1.6-1v5:amd64 (1.6.0+4725-4) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up perm (0.4.0-2) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up fonts-cmu (0.7.0-3) ... Setting up libdrm-nouveau2:amd64 (2.4.74-1) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up seqan-apps (2.3.1+dfsg-4) ... Setting up profphd-net (1.0.22-4) ... Setting up gff2ps (0.98d-5) ... Setting up libgmpxx4ldbl:amd64 (2:6.1.2+dfsg-1) ... Setting up barrnap (0.7+dfsg-2) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up bc (1.06.95-9+b3) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libstring-approx-perl (3.27-1+b4) ... Setting up ttf-adf-universalis (0.20090423-2) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libcommons-codec-java (1.10-1) ... Setting up libjson-perl (2.90-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libsub-uplevel-perl (0.2600-1) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up fonts-dejavu-extra (2.37-1) ... Setting up libparams-util-perl (1.07-3+b1) ... Setting up libnaga-java (3.0+svn80-1) ... Setting up fonts-freefont-ttf (20120503-6) ... Setting up libjs-jquery-metadata (11-3) ... Setting up ruby-minitest (5.9.0-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up libvorbis0a:amd64 (1.3.5-4+deb9u2) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up libzzip-0-13:amd64 (0.13.62-3.2~deb9u1) ... Setting up fonts-sil-gentium (20081126:1.03-1) ... Setting up mustang (3.2.3-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up libsub-name-perl (0.21-1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libtext-csv-perl (1.33-2) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up manpages-dev (4.10-2) ... Setting up libnlopt0:amd64 (2.4.2+dfsg-2+b2) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up hicolor-icon-theme (0.15-1) ... Setting up fastahack (0.0+20160702-1+b1) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libslang2:amd64 (2.3.1-5) ... Setting up libpth20:amd64 (2.0.7-20+b2) ... Setting up cron (3.0pl1-128+deb9u1) ... Adding group `crontab' (GID 151) ... Done. update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libfile-copy-link-perl (0.140-2) ... Setting up libxpp3-java (1.1.4c-2) ... Setting up fonts-sil-gentium-basic (1.1-7) ... Setting up libpostscript-perl (0.06-2) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up libgetopt-java (1.0.14+dfsg-3) ... Setting up libfcgi-perl (0.78-2) ... Setting up minia (1.6906-1+b2) ... Setting up lua-lpeg:amd64 (1.0.0-1) ... Setting up autodock (4.2.6-3+b1) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libset-intspan-perl (1.19-1) ... Setting up proftmb (1.1.12-6+b1) ... Setting up libtexluajit2:amd64 (2016.20160513.41080.dfsg-2+deb9u1) ... Setting up fonts-gfs-olga (1.1-5) ... Setting up libxpp2-java (2.1.10-7) ... Setting up libcdt5 (2.38.0-17) ... Setting up libjs-modernizr (2.6.2+ds1-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libghemical-data (3.0.0-4.1) ... Setting up libguard-perl (1.023-1+b2) ... Setting up ssw-align (1.1-1+b1) ... Setting up libitext5-java (5.5.6-2) ... Setting up libitm1:amd64 (6.3.0-18+deb9u1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up gff2aplot (2.0-8+b1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libhamcrest-java (1.3-6) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libfile-slurper-perl (0.009-1) ... Setting up autopoint (0.19.8.1-2+deb9u1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libjellyfish-2.0-2 (2.2.6-1+b1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libhat-trie0:amd64 (0.0~git25f9e946-2) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up libalgorithm-c3-perl (0.10-1) ... Setting up fonts-circos-symbols (0.69.4+dfsg-1) ... Setting up librelaxng-datatype-java (1.0+ds1-3) ... Setting up hyphy-common (2.2.7+dfsg-1) ... Setting up squizz (0.99c+dfsg-1) ... Setting up libsmithwaterman0 (0.0+20160702-1+b1) ... Setting up profnet-con (1.0.22-4) ... Setting up libconfig-general-perl (2.63-1) ... Setting up libsaxon-java (1:6.5.5-10) ... Setting up libcommons-cli-java (1.3.1-3) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up libngs-java (1.3.0-2) ... Setting up disulfinder (1.2.11-6) ... Setting up r-doc-html (3.3.3-1) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libclass-c3-perl (0.32-1) ... Setting up wigeon (20101212+dfsg1-1) ... Setting up libwrap0:amd64 (7.6.q-26) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libspiffy-perl (0.41-1) ... Setting up mailutils-common (1:3.1.1-1) ... Setting up fonts-roboto-hinted (2:0~20160106-2) ... Setting up libtest-warn-perl (0.32-1) ... Setting up king-probe (2.13.110909-2) ... Setting up fonts-lyx (2.2.2-1) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libwayland-server0:amd64 (1.12.0-1+deb9u1) ... Setting up netbase (5.4) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up fonts-dejavu (2.37-1) ... Setting up libwcs5:amd64 (5.16-1) ... Setting up swarm (2.1.12+dfsg-1) ... Setting up libopenblas-base (0.2.19-3) ... update-alternatives: using /usr/lib/openblas-base/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/openblas-base/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up augustus-data (3.2.3+dfsg-1) ... Setting up sumatra (1.0.20-1+b1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up dwgsim (0.1.11-3+b1) ... Setting up libai-fann-perl (0.10-3+b2) ... Setting up libregexp-common-perl (2016060801-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libedit2:amd64 (3.1-20160903-3) ... Setting up libnumber-format-perl (1.75-1) ... Setting up libgmp-dev:amd64 (2:6.1.2+dfsg-1) ... Setting up vcftools (0.1.14+dfsg-4+deb9u1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libnb-org-openide-util-java (8.1+dfsg1-5) ... Setting up libclass-c3-xs-perl (0.14-1+b1) ... Setting up cpp (4:6.3.0-4) ... Setting up libsub-install-perl (0.928-1) ... Setting up libmath-random-mt-perl (1.17-1+b2) ... Setting up libfindbin-libs-perl (2.150-1) ... Setting up binfmt-support (2.1.6-2) ... update-binfmts: warning: python3.5 already enabled in kernel. update-binfmts: warning: python2.7 already enabled in kernel. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up gnustep-base-common (1.24.9-3.1+deb9u1) ... Setting up libmath-vecstat-perl (0.08-1) ... Setting up libdevel-symdump-perl (2.17-1) ... Setting up libblosc1 (1.11.1+ds2-1) ... Setting up mafft (7.307-1) ... Setting up libtest-deep-perl (1.126-1) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libbpp-seq9v5:amd64 (2.2.0-1+b1) ... Setting up libatlas3-base (3.10.3-1+b1) ... Setting up libparse-yapp-perl (1.05-12) ... Setting up libcommon-sense-perl (3.74-2) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libhpdf-2.2.1 (2.2.1-1.1+b1) ... Setting up cd-hit (4.6.6-2) ... Setting up libipc-sharelite-perl (0.17-4) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtry-tiny-perl (0.28-1) ... Setting up libdata-dumper-simple-perl (0.11-5) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libjs-jquery-tablesorter (11-3) ... Setting up profnet-norsnet (1.0.22-4) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up profnet-bval (1.0.22-4) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libobjc4:amd64 (6.3.0-18+deb9u1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libpcre3-dev:amd64 (2:8.39-3) ... Setting up snp-sites (2.3.2-1) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up liblog-log4perl-perl (1.48-1+deb9u1) ... Setting up libbz2-dev:amd64 (1.0.6-8.1) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libmath-tamuanova-perl (1.0.2-2+b4) ... Setting up libperl4-corelibs-perl (0.003-2+deb9u1) ... Setting up profbval (1.0.22-4) ... Setting up libpam-cap:amd64 (1:2.25-1) ... Setting up sysstat (11.4.3-2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up mash (1.1.1-2) ... Setting up progressivemauve (1.2.0+4713-2+b2) ... Setting up libtmglib3 (3.7.0-2) ... Setting up libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libconfig-inifiles-perl (2.94-1) ... Setting up tex-common (6.06) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libboost-timer1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libarchive-zip-perl (1.59-1+deb9u1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libmng1:amd64 (1.0.10+dfsg-3.1+b5) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2) ... Setting up libglpk40:amd64 (4.61-1) ... Setting up libfreecontact0v5:amd64 (1.0.21-5) ... Setting up libdbus-java (2.8-6) ... Setting up libgraphics-colorobject-perl (0.5.0-7.1) ... Setting up berkeley-express (1.5.1-3+b1) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libanyevent-perl (7.130-2) ... Setting up libio-pty-perl (1:1.08-1.1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.74-1) ... Setting up ttf-dejavu-core (2.37-1) ... Setting up grinder (0.5.4-1) ... Setting up libfile-which-perl (1.21-1) ... Setting up axe-demultiplexer (0.3.2+dfsg1-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libperlio-gzip-perl (0.19-1+b2) ... Setting up libtext-csv-xs-perl (1.26-1) ... Setting up profphd-utils (1.0.10-3+b1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up liberror-perl (0.17024-1) ... Setting up libdjvulibre21:amd64 (3.5.27.1-7) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libvariable-magic-perl (0.61-1) ... Setting up saint (2.5.0+dfsg-2+b1) ... Setting up transrate-tools (1.0.0-1+b1) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up apbs (1.4-1+b1) ... Setting up libjs-twitter-bootstrap (2.0.2+dfsg-10) ... Setting up libgsl-dev (2.3+dfsg-1) ... Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up librole-tiny-perl (2.000005-1) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libarchive13:amd64 (3.2.2-2+deb9u2) ... Setting up librg-reprof-bundle-perl (1.0.1-4) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libgvpr2 (2.38.0-17) ... 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Setting up libasync-interrupt-perl (1.21-1+b2) ... Setting up libtest-exception-perl (0.43-1) ... Setting up java-wrappers (0.1.28) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Setting up dialign-tx (1.0.2-9) ... Setting up libcapture-tiny-perl (0.44-1) ... Setting up libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Setting up predictnls (1.0.20-3) ... Setting up libio-html-perl (1.001-1) ... Setting up libexporter-tiny-perl (0.042-1) ... Setting up bio-rainbow (2.0.4-1+b1) ... Setting up fonts-lobstertwo (2.0-2) ... Setting up libllvm3.9:amd64 (1:3.9.1-9) ... Setting up libwayland-client0:amd64 (1.12.0-1+deb9u1) ... Setting up libgbm1:amd64 (13.0.6-1+b2) ... Setting up theseus (3.3.0-5+b1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libglpk-java (1.7.0-1) ... Setting up ksh (93u+20120801-3.1) ... update-alternatives: using /bin/ksh93 to provide /bin/ksh (ksh) in auto mode Setting up libtie-ixhash-perl (1.23-2) ... Setting up transdecoder (3.0.1+dfsg-1) ... Setting up libflac8:amd64 (1.3.2-1) ... Setting up liblist-utilsby-perl (0.10-1) ... Setting up libev-perl (4.22-1+b1) ... Setting up libhsqldb-java (2.3.4-1) ... Setting up exonerate (2.4.0-2) ... Setting up libjxr-tools (1.1-6+b1) ... Setting up libcarp-clan-perl (6.06-1) ... Setting up libdpkg-perl (1.18.25) ... Setting up tex-gyre (20160520-1) ... Setting up libmath-derivative-perl (0.04-2) ... Setting up art-nextgen-simulation-tools (20160605+dfsg-2) ... Setting up norsp (1.0.6-2) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libwebpmux2:amd64 (0.5.2-1) ... Setting up libyaml-perl (1.21-1) ... Setting up libperlio-utf8-strict-perl (0.006-1+b2) ... Setting up libparse-recdescent-perl (1.967013+dfsg-1) ... Setting up bamtools (2.4.1+dfsg-1) ... Setting up libguava-java (19.0-1) ... Setting up libnss3:amd64 (2:3.26.2-1.1+deb9u1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libncbi-vdb2 (2.8.1+dfsg-2) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up glib-networking-services (2.50.0-1+deb9u1) ... Setting up libipc-shareable-perl (0.61-1) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up ssl-cert (1.0.39) ... Setting up xsltproc (1.1.29-2.1+deb9u2) ... Setting up preview-latex-style (11.90-1) ... Setting up autoconf (2.69-10) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up profisis (1.0.11-3) ... Setting up libmro-compat-perl (0.12-1) ... Setting up libbpp-phyl9v5:amd64 (2.2.0-1+b1) ... Setting up libtype-tiny-xs-perl (0.012-1+b2) ... Setting up libicu-dev (57.1-6+deb9u4) ... Setting up libtest-simple-perl (1.302075-1) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up exim4-base (4.89-2+deb9u7) ... exim: DB upgrade, deleting hints-db Setting up libopenexr22:amd64 (2.2.0-11+b1) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up ttf-liberation (1:1.07.4-2) ... Setting up libarray-utils-perl (0.5-1) ... Setting up libsub-identify-perl (0.12-2+b1) ... Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up gnuplot-data (5.0.5+dfsg1-6+deb9u1) ... Setting up tcpd (7.6.q-26) ... Setting up libtypes-serialiser-perl (1.0-1) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libdsdp-5.8gf (5.8-9.4) ... Setting up libyaml-tiny-perl (1.70-1) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-2) ... Setting up mapsembler2 (2.2.3+dfsg-3+b1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libdevel-caller-perl (2.06-1+b4) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up phybin (0.3-1+b1) ... Setting up libmath-vec-perl (1.01-3) ... Setting up libtest-file-perl (1.442-1) ... Setting up libcommons-dbcp-java (1.4-5) ... Setting up libxfont1:amd64 (1:1.5.2-4) ... Setting up sqlite3 (3.16.2-5+deb9u1) ... Setting up libterm-readkey-perl (2.37-1) ... Setting up libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Setting up libstatistics-basic-perl (1.6611-1) ... Setting up gcc-6 (6.3.0-18+deb9u1) ... Setting up smalt (0.7.6-6) ... Setting up hdf5-tools (1.10.0-patch1+docs-3+deb9u1) ... Setting up libio-all-perl (0.86-2) ... Setting up libjson-glib-1.0-0:amd64 (1.2.6-1) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libmime-types-perl (2.13-1) ... Setting up mlv-smile (1.47-4+b1) ... Setting up libcroco3:amd64 (0.6.11-3) ... Setting up libsub-exporter-perl (0.986-1) ... Setting up abacas (1.3.1-3) ... Setting up g++-6 (6.3.0-18+deb9u1) ... Setting up libcommons-parent-java (39-3) ... Setting up libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up libxerces2-java (2.11.0-7) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up libalgorithm-merge-perl (0.08-3) ... Setting up pkg-config (0.29-4+b1) ... Setting up liblqr-1-0:amd64 (0.4.2-2+b2) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up libfreehep-io-java (2.0.2-5) ... Setting up dpkg-dev (1.18.25) ... Setting up libxalan2-java (2.7.1-9) ... Setting up libalgorithm-diff-xs-perl (0.04-4+b2) ... Setting up ttf-dejavu-extra (2.37-1) ... Setting up libqtcore4:amd64 (4:4.8.7+dfsg-11) ... Setting up libfile-desktopentry-perl (0.22-1) ... Setting up libxom-java (1.2.10-1) ... Setting up libfreehep-util-java (2.0.2-6) ... Setting up libncursesw5-dev:amd64 (6.0+20161126-1+deb9u2) ... Setting up libbsf-java (1:2.4.0-5) ... Setting up libgoogle-glog0v5 (0.3.4-2) ... Setting up libjdom1-java (1.1.3-1) ... Setting up hmmer2 (2.3.2-13) ... Setting up libjlapack-java (0.8~dfsg-3) ... Setting up libanyevent-http-perl (2.23-1) ... Setting up glpk-utils (4.61-1) ... Setting up plink1.9 (1.90~b3.45-170113-1) ... Setting up libcommons-compress-java (1.13-1) ... Setting up libatk1.0-0:amd64 (2.22.0-1) ... Setting up libcommons-lang3-java (3.5-1) ... Setting up libsnappy-java (1.1.2.6-1) ... Setting up libtext-wrapi18n-perl (0.06-7.1) ... Setting up wise (2.4.1-19) ... Setting up guile-2.0-libs:amd64 (2.0.13+1-4) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libjmol-java (14.6.4+2016.11.05+dfsg1-3) ... Setting up tcl8.6 (8.6.6+dfsg-1+b1) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up jellyfish (2.2.6-1+b1) ... Setting up sphinx-rtd-theme-common (0.1.9-1) ... Setting up physamp (0.2.0-1+b1) ... Setting up libpython2.7:amd64 (2.7.13-2+deb9u3) ... Setting up automake (1:1.15-6) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up bioperl (1.7.1-2) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up norsnet (1.0.17-2) ... Setting up libfreehep-graphics2d-java (2.1.1-5) ... Setting up libdconf1:amd64 (0.26.0-2+b1) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up rubygems-integration (1.11) ... Setting up libwebpdemux2:amd64 (0.5.2-1) ... Setting up libexpat1-dev:amd64 (2.2.0-2+deb9u3) ... Setting up liblapacke (3.7.0-2) ... Setting up libarpack2 (3.4.0-1+b1) ... Setting up man-db (2.7.6.1-2) ... Building database of manual pages ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up libgudev-1.0-0:amd64 (230-3) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libpython2.7-dev:amd64 (2.7.13-2+deb9u3) ... Setting up smithwaterman (0.0+20160702-1+b1) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libeval-closure-perl (0.14-1) ... Setting up libfreehep-swing-java (2.0.3-4) ... Setting up libcolord2:amd64 (1.3.3-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.1-2) ... Setting up libpng-dev:amd64 (1.6.28-1+deb9u1) ... Setting up dbus (1.10.32-0+deb9u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libvorbisenc2:amd64 (1.3.5-4+deb9u2) ... Setting up libcaca0:amd64 (0.99.beta19-2.1~deb9u1) ... Setting up gnupg-agent (2.1.18-8~deb9u4) ... Setting up jarwrapper (0.59) ... Setting up libdbd-mysql-perl (4.041-2) ... Setting up altree (1.3.1-4+b2) ... Setting up libcommons-lang-java (2.6-6) ... Setting up libqt4-test:amd64 (4:4.8.7+dfsg-11) ... Setting up libfile-mimeinfo-perl (0.27-1) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up rapmap (0.4.0+dfsg-2) ... Setting up python2.7-dev (2.7.13-2+deb9u3) ... Setting up libjas-plotter-java (2.2.6+dfsg1-3) ... Setting up libkyotocabinet16v5:amd64 (1.2.76-4.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-1) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libw ***** Command was terminated after exceeding runtime limit (3600 s) ***** 60m20.1s DEBUG: kill -15 4155643 60m20.4s DEBUG: kill -15 4155642 60m20.7s DEBUG: kill -15 4155629 60m20.9s DEBUG: kill -15 4034060 60m21.2s DEBUG: kill -15 615916 60m21.4s DEBUG: kill -15 615915 60m34.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/proc/sys/fs/binfmt_misc'] 60m34.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/proc/sys/fs/binfmt_misc'] 60m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/shm'] 60m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/shm'] 60m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/console'] 60m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/console'] 60m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/ptmx'] 60m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/ptmx'] 60m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/pts'] 60m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/dev/pts'] 60m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/proc'] 60m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmplpr_664k/proc'] 60m35.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmplpr_664k'] 60m38.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmplpr_664k'] 60m38.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmplpr_664k 60m38.1s ERROR: piuparts run ends. ret=1 End: 2023-04-19 22:05:30 GMT