Start: 2022-11-29 10:50:24 GMT [stretch] Package: gbrowse Version: 2.56+dfsg-2 Installed-Size: 7015 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, apache2 (>= 2.4) | httpd-cgi, bioperl, libbio-graphics-perl (>= 2.31), libbio-coordinate-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base (>= 3.0-6) Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description: GMOD Generic Genome Browser Homepage: http://www.gbrowse.org/ Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-2_all.deb Size: 2373492 MD5sum: a813d344ffc1119a68e1863da9f56ad9 SHA256: 286a0302c0219a68597d42ade3d50b505ae3c51307d5a654426618539a1c4525 [buster] Package: gbrowse Version: 2.56+dfsg-4 Installed-Size: 7016 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, apache2 (>= 2.4) | httpd-cgi, bioperl, libbio-graphics-perl (>= 2.31), libbio-coordinate-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description: GMOD Generic Genome Browser Homepage: http://www.gbrowse.org/ Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-4_all.deb Size: 2372120 MD5sum: 6cea635b81f1b13db93ff45220b41d31 SHA256: f9344103e9d4cb2d0a44e5df873443f371c664eac179182d4da497e9989bb1e8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt gbrowse=2.56+dfsg-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt gbrowse=2.56+dfsg-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpc_els25h 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpc_els25h 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpc_els25h', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpc_els25h', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpc_els25h/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpc_els25h/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpc_els25h/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'update'] 0m2.6s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_minimize'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_minimize'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_zz_backports'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_setup_zz_backports'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m5.0s DUMP: Package: gbrowse Version: 2.56+dfsg-2 Installed-Size: 7015 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, apache2 (>= 2.4) | httpd-cgi, bioperl, libbio-graphics-perl (>= 2.31), libbio-coordinate-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base (>= 3.0-6) Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description-en: GMOD Generic Genome Browser Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features: * Simultaneous bird's eye and detailed views of the genome; * Scroll, zoom, center; * Attach arbitrary URLs to any annotation; * Order and appearance of tracks are customizable by administrator and end-user; * Search by annotation ID, name, or comment; * Supports third party annotation using GFF formats; * Settings persist across sessions; * DNA and GFF dumps; * Connectivity to different databases, including BioSQL and Chado; * Multi-language support; * Third-party feature loading; * Customizable plug-in architecture (e.g. run BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features). Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Homepage: http://www.gbrowse.org/ Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-2_all.deb Size: 2373492 MD5sum: a813d344ffc1119a68e1863da9f56ad9 SHA256: 286a0302c0219a68597d42ade3d50b505ae3c51307d5a654426618539a1c4525 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m5.0s INFO: apt-cache knows about the following packages: gbrowse 0m5.0s INFO: Running scripts pre_install 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy'] 0m5.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy', 'gbrowse'] 0m5.1s DUMP: gbrowse: Installed: (none) Candidate: 2.56+dfsg-2 Version table: 2.56+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy', 'gbrowse'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-y', 'install', 'gbrowse'] 1m7.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools beignet-opencl-icd bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fsa gawk ghostscript graphviz gsfonts hmmer hyphy-common hyphy-mpi infernal javascript-common kalign krb5-locales libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasync-interrupt-perl libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libbio-asn1-entrezgene-perl libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdrm-intel1 libdrm2 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu57 libidn11 libidn2-0 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadbclient18 libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-runtime-perl libmoo-perl libmpfr4 libncurses5 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi2 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libperl5.24 libpixman-1-0 libpng16-16 libpostscript-perl libpq5 libprocps6 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libreadline7 librole-tiny-perl librtmp1 libruby2.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstaden-read11 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-readkey-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libunicode-map-perl libunistring0 liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lsb-base lynx lynx-common mafft maq med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python python-minimal python2.7 python2.7-minimal rake raxml readline-common rename ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xdg-user-dirs xml-core xz-utils zip Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom filo groff-base gmap paml blends-doc bowtie-examples bzip2-doc clustalx seaview default-dbus-session-bus | dbus-session-bus emboss-doc emboss-test embassy fonts-noto gawk-doc gbrowse-data gbrowse-calign libfile-nfslock-perl ghostscript-x graphviz-doc hmmer-doc libevent-perl libio-async-perl libpoe-perl libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gnutls-bin gpm krb5-doc krb5-user libdata-dump-perl libhtml-element-extended-perl libhwloc-contrib-plugins liblcms2-utils libcrypt-ssleay-perl uuid libscalar-number-perl pciutils libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libmime-lite-perl libnet-jabber-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-stacktrace-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl menu-l10n gksu | kde-runtime | ktsuss mustang-testdata gfortran libterm-readline-gnu-perl | libterm-readline-perl-perl make man-browser phylip-doc poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python-doc python-tk python2.7-doc binutils binfmt-support readline-doc ri ruby-dev bundler sgml-base-doc sqlite3-doc openssl-blacklist boxshade t-coffee-examples pymol rasmol wise-doc debhelper The following NEW packages will be installed: amap-align apache2 apache2-bin apache2-data apache2-utils bedtools beignet-opencl-icd bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 ca-certificates clustalo clustalw dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fsa gawk gbrowse ghostscript graphviz gsfonts hmmer hyphy-common hyphy-mpi infernal javascript-common kalign krb5-locales libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasync-interrupt-perl libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libbio-asn1-entrezgene-perl libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdrm-intel1 libdrm2 libencode-locale-perl liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libffi6 libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgd-perl libgd-svg-perl libgd3 libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libhmsbeagle1v5 libhogweed4 libhpdf-2.2.1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu57 libidn11 libidn2-0 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadbclient18 libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmldbm-perl libmodule-runtime-perl libmoo-perl libmpfr4 libncurses5 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi2 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libperl5.24 libpixman-1-0 libpng16-16 libpostscript-perl libpq5 libprocps6 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libreadline7 librole-tiny-perl librtmp1 libruby2.3 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstaden-read11 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-name-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtasn1-6 libterm-readkey-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libunicode-map-perl libunistring0 liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lsb-base lynx lynx-common mafft maq med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl perl perl-doc perl-modules-5.24 perl-openssl-defaults perl-tk phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python python-minimal python2.7 python2.7-minimal rake raxml readline-common rename ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xdg-user-dirs xml-core xz-utils zip 0 upgraded, 412 newly installed, 0 to remove and 0 not upgraded. Need to get 248 MB of archives. After this operation, 1154 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libapr1 amd64 1.5.2-5 [96.6 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 apache2-bin amd64 2.4.25-3+deb9u9 [1185 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 apache2-utils amd64 2.4.25-3+deb9u9 [218 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 apache2-data all 2.4.25-3+deb9u9 [162 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 apache2 amd64 2.4.25-3+deb9u9 [237 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 fonts-liberation all 1:1.07.4-2 [827 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 fonts-lato all 2.0-1 [2684 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 poppler-data all 0.4.7-8 [1451 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 amap-align amd64 2.2-6 [129 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 bedtools amd64 2.26.0+dfsg-3 [584 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 bioperl all 1.7.1-2 [422 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libbio-perl-run-perl all 1.7.1-3 [816 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 bioperl-run all 1.7.1-3 [44.2 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:91 http://deb.debian.org/debian stretch/main amd64 blast2 all 1:2.6.0-1 [9084 B] Get:92 http://deb.debian.org/debian stretch/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 blends-common all 0.6.96 [23.3 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 clustalo amd64 1.2.4-1 [263 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 clustalw amd64 2.1+lgpl-5 [286 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 dialign amd64 2.2.1-8 [138 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 dialign-tx-data all 1.0.2-9 [869 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 dialign-tx amd64 1.0.2-9 [85.7 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libhpdf-2.2.1 amd64 2.2.1-1.1+b1 [319 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 mysql-common all 5.8+1.0.2 [5608 B] Get:116 http://deb.debian.org/debian stretch/main amd64 libmariadbclient18 amd64 10.1.45-0+deb9u1 [785 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libpq5 amd64 9.6.17-0+deb9u1 [137 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 emboss-lib amd64 6.6.0+dfsg-6 [2773 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 emboss-data all 6.6.0+dfsg-6 [61.1 MB] Get:120 http://deb.debian.org/debian stretch/main amd64 emboss amd64 6.6.0+dfsg-6 [1058 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 exonerate amd64 2.4.0-2 [1476 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 fonts-noto-mono all 20161116-1 [79.2 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 mummer amd64 3.23+dfsg-2 [809 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 fsa amd64 1.15.9+dfsg-3 [753 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 libgd-perl amd64 2.53-3 [177 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 libbio-graphics-perl all 2.40-1 [611 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 libbio-coordinate-perl all 1.7.1-1 [56.0 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 libcgi-pm-perl all 4.35-1 [222 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 libcgi-session-perl all 4.48-3 [119 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 libjson-perl all 2.90-1 [86.0 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:149 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:153 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:155 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 libterm-readkey-perl amd64 2.37-1 [27.2 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 sqlite3 amd64 3.16.2-5+deb9u1 [784 kB] Get:158 http://deb.debian.org/debian stretch/main amd64 libdbi-perl amd64 1.636-1+b1 [766 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libjs-prototype all 1.7.1-3 [44.3 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libjs-scriptaculous all 1.9.0-2 [129 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libanyevent-perl amd64 7.130-2 [391 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libanyevent-cachedns-perl all 0.08-2 [7150 B] Get:164 http://deb.debian.org/debian stretch/main amd64 libcommon-sense-perl amd64 3.74-2 [23.6 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libanyevent-http-perl all 2.23-1 [34.6 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libstring-approx-perl amd64 3.27-1+b4 [40.0 kB] Get:167 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 libvm-ec2-perl all 1.28-2 [768 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 gbrowse all 2.56+dfsg-2 [2373 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libavahi-common-data amd64 0.6.32-2 [118 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libcupsimage2 amd64 2.2.1-8+deb9u6 [122 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libijs-0.35 amd64 0.35-12 [18.4 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 libjbig2dec0 amd64 0.13-4.1 [60.1 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 liblcms2-2 amd64 2.8-4+deb9u1 [143 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 libopenjp2-7 amd64 2.1.2-1.1+deb9u4 [122 kB] Get:185 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:186 http://deb.debian.org/debian stretch/main amd64 libgs9-common all 9.26a~dfsg-0+deb9u6 [5143 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libgs9 amd64 9.26a~dfsg-0+deb9u6 [2213 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 ghostscript amd64 9.26a~dfsg-0+deb9u6 [99.2 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 libann0 amd64 1.1.2+doc-6 [24.9 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 libcdt5 amd64 2.38.0-17 [59.6 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 libcgraph6 amd64 2.38.0-17 [82.2 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:197 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:199 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:200 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 libpathplan4 amd64 2.38.0-17 [62.8 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 libxdot4 amd64 2.38.0-17 [55.6 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 libgvc6 amd64 2.38.0-17 [639 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 libgvpr2 amd64 2.38.0-17 [211 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:213 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 graphviz amd64 2.38.0-17 [802 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.3 [3126 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 hyphy-common all 2.2.7+dfsg-1 [619 kB] Get:223 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:226 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:232 http://deb.debian.org/debian stretch/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:235 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:236 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:238 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:239 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:243 http://deb.debian.org/debian stretch/main amd64 hyphy-mpi amd64 2.2.7+dfsg-1+b2 [920 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 infernal amd64 1.1.2-1 [22.0 MB] Get:245 http://deb.debian.org/debian stretch/main amd64 javascript-common all 11 [6120 B] Get:246 http://deb.debian.org/debian stretch/main amd64 kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 liberror-perl all 0.17024-1 [26.9 kB] Get:248 http://deb.debian.org/debian stretch/main amd64 libipc-sharelite-perl amd64 0.17-4 [24.0 kB] Get:249 http://deb.debian.org/debian stretch/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:250 http://deb.debian.org/debian stretch/main amd64 libace-perl amd64 1.92-4+b1 [286 kB] Get:251 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:252 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:254 http://deb.debian.org/debian stretch/main amd64 libdevel-symdump-perl all 2.17-1 [17.0 kB] Get:255 http://deb.debian.org/debian stretch/main amd64 libapache2-mod-perl2 amd64 2.0.10-2+deb9u1 [886 kB] Get:256 http://deb.debian.org/debian stretch/main amd64 libapache-dbi-perl all 1.12-1 [54.6 kB] Get:257 http://deb.debian.org/debian stretch/main amd64 libapache2-reload-perl all 0.13-1 [17.4 kB] Get:258 http://deb.debian.org/debian stretch/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:259 http://deb.debian.org/debian stretch/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:260 http://deb.debian.org/debian stretch/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:261 http://deb.debian.org/debian stretch/main amd64 libparams-classify-perl amd64 0.013-6+b1 [24.4 kB] Get:262 http://deb.debian.org/debian stretch/main amd64 libmodule-runtime-perl all 0.014-2 [18.0 kB] Get:263 http://deb.debian.org/debian stretch/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:264 http://deb.debian.org/debian stretch/main amd64 librole-tiny-perl all 2.000005-1 [19.0 kB] Get:265 http://deb.debian.org/debian stretch/main amd64 libstrictures-perl all 2.000003-1 [18.1 kB] Get:266 http://deb.debian.org/debian stretch/main amd64 libmoo-perl all 2.002005-1 [67.0 kB] Get:267 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-perl all 1.000005-1 [271 kB] Get:268 http://deb.debian.org/debian stretch/main amd64 libarray-compare-perl all 3.0.0-1 [14.0 kB] Get:269 http://deb.debian.org/debian stretch/main amd64 libasync-interrupt-perl amd64 1.21-1+b2 [33.9 kB] Get:270 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:271 http://deb.debian.org/debian stretch/main amd64 libbio-asn1-entrezgene-perl all 1.720-1 [38.5 kB] Get:272 http://deb.debian.org/debian stretch/main amd64 libstaden-read11 amd64 1.14.8-2 [311 kB] Get:273 http://deb.debian.org/debian stretch/main amd64 libbio-scf-perl amd64 1.03-3 [20.3 kB] Get:274 http://deb.debian.org/debian stretch/main amd64 libcarp-clan-perl all 6.06-1 [12.9 kB] Get:275 http://deb.debian.org/debian stretch/main amd64 libbit-vector-perl amd64 7.4-1+b2 [146 kB] Get:276 http://deb.debian.org/debian stretch/main amd64 libbsd-resource-perl amd64 1.2910-1+b1 [33.7 kB] Get:277 http://deb.debian.org/debian stretch/main amd64 libfcgi-perl amd64 0.78-2 [38.2 kB] Get:278 http://deb.debian.org/debian stretch/main amd64 libcgi-fast-perl all 1:2.12-1 [11.2 kB] Get:279 http://deb.debian.org/debian stretch/main amd64 libclass-inspector-perl all 1.31-1 [18.7 kB] Get:280 http://deb.debian.org/debian stretch/main amd64 libclass-xsaccessor-perl amd64 1.19-2+b7 [36.7 kB] Get:281 http://deb.debian.org/debian stretch/main amd64 libclone-perl amd64 0.38-2+b1 [13.6 kB] Get:282 http://deb.debian.org/debian stretch/main amd64 libconvert-binary-c-perl amd64 0.78-1+b1 [271 kB] Get:283 http://deb.debian.org/debian stretch/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:284 http://deb.debian.org/debian stretch/main amd64 libcrypt-rc4-perl all 2.02-2 [8150 B] Get:285 http://deb.debian.org/debian stretch/main amd64 libcupsfilters1 amd64 1.11.6-3+deb9u1 [129 kB] Get:286 http://deb.debian.org/debian stretch/main amd64 libdate-calc-perl all 6.4-1 [194 kB] Get:287 http://deb.debian.org/debian stretch/main amd64 libdate-calc-xs-perl amd64 6.4-1+b2 [54.3 kB] Get:288 http://deb.debian.org/debian stretch/main amd64 libdate-manip-perl all 6.57-1 [911 kB] Get:289 http://deb.debian.org/debian stretch/main amd64 libdbd-mysql-perl amd64 4.041-2 [114 kB] Get:290 http://deb.debian.org/debian stretch/main amd64 libdbd-pg-perl amd64 3.5.3-1+b2 [203 kB] Get:291 http://deb.debian.org/debian stretch/main amd64 libpadwalker-perl amd64 2.2-2+b1 [19.7 kB] Get:292 http://deb.debian.org/debian stretch/main amd64 libdevel-caller-perl amd64 2.06-1+b4 [11.8 kB] Get:293 http://deb.debian.org/debian stretch/main amd64 libdevel-lexalias-perl amd64 0.05-1+b4 [8752 B] Get:294 http://deb.debian.org/debian stretch/main amd64 libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:295 http://deb.debian.org/debian stretch/main amd64 libdrm2 amd64 2.4.74-1 [36.2 kB] Get:296 http://deb.debian.org/debian stretch/main amd64 libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:297 http://deb.debian.org/debian stretch/main amd64 libfile-slurp-tiny-perl all 0.003-1 [6852 B] Get:298 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:299 http://deb.debian.org/debian stretch/main amd64 libfreezethaw-perl all 0.5001-1 [18.2 kB] Get:300 http://deb.debian.org/debian stretch/main amd64 libsvg-perl all 2.64-1 [69.8 kB] Get:301 http://deb.debian.org/debian stretch/main amd64 libgd-svg-perl all 0.33-1 [64.8 kB] Get:302 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:303 http://deb.debian.org/debian stretch/main amd64 libgraph-perl all 1:0.96-2 [126 kB] Get:304 http://deb.debian.org/debian stretch/main amd64 libio-pty-perl amd64 1:1.08-1.1+b2 [33.6 kB] Get:305 http://deb.debian.org/debian stretch/main amd64 libipc-run-perl all 0.94-1+deb9u1 [99.1 kB] Get:306 http://deb.debian.org/debian stretch/main amd64 libparse-recdescent-perl all 1.967013+dfsg-1 [159 kB] Get:307 http://deb.debian.org/debian stretch/main amd64 libxml-twig-perl all 1:3.50-1 [179 kB] Get:308 http://deb.debian.org/debian stretch/main amd64 libxml-xpath-perl all 1.40-1 [69.2 kB] Get:309 http://deb.debian.org/debian stretch/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get:310 http://deb.debian.org/debian stretch/main amd64 libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:311 http://deb.debian.org/debian stretch/main amd64 libguard-perl amd64 1.023-1+b2 [15.8 kB] Get:312 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:313 http://deb.debian.org/debian stretch/main amd64 beignet-opencl-icd amd64 1.3.0-4 [12.8 MB] Get:314 http://deb.debian.org/debian stretch/main amd64 libhmsbeagle1v5 amd64 2.1.2+20160831-5 [116 kB] Get:315 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:316 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:317 http://deb.debian.org/debian stretch/main amd64 libhtml-tableextract-perl all 2.13-1 [30.7 kB] Get:318 http://deb.debian.org/debian stretch/main amd64 libhts1 amd64 1.3.2-2 [257 kB] Get:319 http://deb.debian.org/debian stretch/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:320 http://deb.debian.org/debian stretch/main amd64 libio-stringy-perl all 2.111-2 [61.2 kB] Get:321 http://deb.debian.org/debian stretch/main amd64 libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:322 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:323 http://deb.debian.org/debian stretch/main amd64 libtypes-serialiser-perl all 1.0-1 [12.7 kB] Get:324 http://deb.debian.org/debian stretch/main amd64 libjson-xs-perl amd64 3.030-1 [91.6 kB] Get:325 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:326 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:327 http://deb.debian.org/debian stretch/main amd64 libmath-derivative-perl all 0.04-2 [7208 B] Get:328 http://deb.debian.org/debian stretch/main amd64 libmath-spline-perl all 0.02-1 [7992 B] Get:329 http://deb.debian.org/debian stretch/main amd64 libmime-tools-perl all 5.508-1 [212 kB] Get:330 http://deb.debian.org/debian stretch/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:331 http://deb.debian.org/debian stretch/main amd64 libole-storage-lite-perl all 0.19-1+deb9u1 [23.4 kB] Get:332 http://deb.debian.org/debian stretch/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:333 http://deb.debian.org/debian stretch/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:334 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:335 http://deb.debian.org/debian stretch/main amd64 libpostscript-perl all 0.06-2 [31.4 kB] Get:336 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:337 http://deb.debian.org/debian stretch/main amd64 libtask-weaken-perl all 1.04-1 [7990 B] Get:338 http://deb.debian.org/debian stretch/main amd64 libsoap-lite-perl all 1.20-1 [259 kB] Get:339 http://deb.debian.org/debian stretch/main amd64 libsort-naturally-perl all 1.03-1 [13.9 kB] Get:340 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:341 http://deb.debian.org/debian stretch/main amd64 libunicode-map-perl amd64 0.112-11+b3 [145 kB] Get:342 http://deb.debian.org/debian stretch/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:343 http://deb.debian.org/debian stretch/main amd64 libsub-name-perl amd64 0.21-1 [13.1 kB] Get:344 http://deb.debian.org/debian stretch/main amd64 libtree-dagnode-perl all 1.29-1 [60.6 kB] Get:345 http://deb.debian.org/debian stretch/main amd64 libsvg-graph-perl all 0.02-2 [130 kB] Get:346 http://deb.debian.org/debian stretch/main amd64 libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:347 http://deb.debian.org/debian stretch/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:348 http://deb.debian.org/debian stretch/main amd64 libtype-tiny-xs-perl amd64 0.012-1+b2 [26.8 kB] Get:349 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:350 http://deb.debian.org/debian stretch/main amd64 libxml-perl all 0.08-2 [113 kB] Get:351 http://deb.debian.org/debian stretch/main amd64 libxml-regexp-perl all 0.04-1 [8370 B] Get:352 http://deb.debian.org/debian stretch/main amd64 libxml-dom-perl all 1.44-2 [179 kB] Get:353 http://deb.debian.org/debian stretch/main amd64 libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:354 http://deb.debian.org/debian stretch/main amd64 libxml-dom-xpath-perl all 0.14-2 [9622 B] Get:355 http://deb.debian.org/debian stretch/main amd64 libxml-filter-buffertext-perl all 1.01-5 [7354 B] Get:356 http://deb.debian.org/debian stretch/main amd64 libxslt1.1 amd64 1.1.29-2.1+deb9u2 [233 kB] Get:357 http://deb.debian.org/debian stretch/main amd64 libxml-libxslt-perl amd64 1.95-1+b1 [46.8 kB] Get:358 http://deb.debian.org/debian stretch/main amd64 libxml-sax-writer-perl all 0.56-1 [23.7 kB] Get:359 http://deb.debian.org/debian stretch/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:360 http://deb.debian.org/debian stretch/main amd64 libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:361 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:362 http://deb.debian.org/debian stretch/main amd64 libyaml-libyaml-perl amd64 0.63-2 [68.8 kB] Get:363 http://deb.debian.org/debian stretch/main amd64 libyaml-perl all 1.21-1 [64.8 kB] Get:364 http://deb.debian.org/debian stretch/main amd64 lynx-common all 2.8.9dev11-1 [1098 kB] Get:365 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:366 http://deb.debian.org/debian stretch/main amd64 maq amd64 0.7.1-7 [311 kB] Get:367 http://deb.debian.org/debian stretch/main amd64 muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:368 http://deb.debian.org/debian stretch/main amd64 mustang amd64 3.2.3-1 [113 kB] Get:369 http://deb.debian.org/debian stretch/main amd64 perl-doc all 5.24.1-3+deb9u7 [7145 kB] Get:370 http://deb.debian.org/debian stretch/main amd64 perl-tk amd64 1:804.033-1+b3 [1943 kB] Get:371 http://deb.debian.org/debian stretch/main amd64 phylip amd64 1:3.696+dfsg-5 [942 kB] Get:372 http://deb.debian.org/debian stretch/main amd64 openmpi-common all 2.0.2-2 [149 kB] Get:373 http://deb.debian.org/debian stretch/main amd64 openmpi-bin amd64 2.0.2-2 [186 kB] Get:374 http://deb.debian.org/debian stretch/main amd64 phyml amd64 3:3.2.0+dfsg-7+b1 [1298 kB] Get:375 http://deb.debian.org/debian stretch/main amd64 poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:376 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:377 http://deb.debian.org/debian stretch/main amd64 primer3 amd64 2.3.7-3 [173 kB] Get:378 http://deb.debian.org/debian stretch/main amd64 probalign amd64 1.4-5 [65.4 kB] Get:379 http://deb.debian.org/debian stretch/main amd64 probcons amd64 1.12-11 [107 kB] Get:380 http://deb.debian.org/debian stretch/main amd64 proda amd64 1.0-10 [60.1 kB] Get:381 http://deb.debian.org/debian stretch/main amd64 psmisc amd64 22.21-2.1+b2 [123 kB] Get:382 http://deb.debian.org/debian stretch/main amd64 rubygems-integration all 1.11 [4994 B] Get:383 http://deb.debian.org/debian stretch/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:384 http://deb.debian.org/debian stretch/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:385 http://deb.debian.org/debian stretch/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:386 http://deb.debian.org/debian stretch/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:387 http://deb.debian.org/debian stretch/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:388 http://deb.debian.org/debian stretch/main amd64 libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:389 http://deb.debian.org/debian stretch/main amd64 ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:390 http://deb.debian.org/debian stretch/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:391 http://deb.debian.org/debian stretch/main amd64 rake all 10.5.0-2+deb9u1 [49.7 kB] Get:392 http://deb.debian.org/debian stretch/main amd64 raxml amd64 8.2.9+dfsg-1+b1 [1278 kB] Get:393 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:394 http://deb.debian.org/debian stretch/main amd64 samtools amd64 1.3.1-3 [254 kB] Get:395 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:396 http://deb.debian.org/debian stretch/main amd64 sim4 amd64 0.0.20121010-4 [396 kB] Get:397 http://deb.debian.org/debian stretch/main amd64 ssl-cert all 1.0.39 [20.8 kB] Get:398 http://deb.debian.org/debian stretch/main amd64 t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:399 http://deb.debian.org/debian stretch/main amd64 tigr-glimmer amd64 3.02b-1 [283 kB] Get:400 http://deb.debian.org/debian stretch/main amd64 tm-align amd64 20160521+dfsg-2 [868 kB] Get:401 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:402 http://deb.debian.org/debian stretch/main amd64 wise-data all 2.4.1-19 [108 kB] Get:403 http://deb.debian.org/debian stretch/main amd64 wise amd64 2.4.1-19 [993 kB] Get:404 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:405 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:406 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:407 http://deb.debian.org/debian stretch/main amd64 bowtie amd64 1.1.2-6 [1618 kB] Get:408 http://deb.debian.org/debian stretch/main amd64 libev-perl amd64 4.22-1+b1 [240 kB] Get:409 http://deb.debian.org/debian stretch/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:410 http://deb.debian.org/debian stretch/main amd64 lynx amd64 2.8.9dev11-1 [632 kB] Get:411 http://deb.debian.org/debian stretch/main amd64 med-config all 3.0.1 [17.1 kB] Get:412 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 248 MB in 8s (28.0 MB/s) Selecting previously unselected package perl-modules-5.24. 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Setting up libgpm2:amd64 (1.20.4-6.2+b1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.7-8) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up mysql-common (5.8+1.0.2) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up infernal (1.1.2-1) ... Setting up probcons (1.12-11) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up dialign (2.2.1-8) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up menu (2.1.47+b1) ... Setting up apache2-data (2.4.25-3+deb9u9) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libmariadbclient18:amd64 (10.1.45-0+deb9u1) ... 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Setting up procps (2:3.3.12-3+deb9u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up fonts-lato (2.0-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1+deb9u2) ... Setting up sim4 (0.0.20121010-4) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up raxml (8.2.9+dfsg-1+b1) ... Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up amap-align (2.2-6) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libjbig2dec0:amd64 (0.13-4.1) ... Setting up libstrictures-perl (2.000003-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up proda (1.0-10) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up krb5-locales (1.15-1+deb9u1) ... Setting up openmpi-common (2.0.2-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up wise-data (2.4.1-19) ... Setting up libsort-naturally-perl (1.03-1) ... Setting up libbsd-resource-perl (1.2910-1+b1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up publicsuffix (20190415.1030-0+deb9u1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ... Setting up liburi-perl (1.71-1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libtext-iconv-perl (1.7-5+b4) ... Setting up primer3 (2.3.7-3) ... Setting up libaprutil1:amd64 (1.5.4-3) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libijs-0.35:amd64 (0.35-12) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libann0 (1.1.2+doc-6) ... Setting up libdate-manip-perl (6.57-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libmldbm-perl (2.05-2) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up probalign (1.4-5) ... Setting up libclone-perl (0.38-2+b1) ... Setting up emboss-data (6.6.0+dfsg-6) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up libclass-xsaccessor-perl (1.19-2+b7) ... Setting up libxml-xpathengine-perl (0.13-1) ... Setting up libnet-http-perl (6.12-1) ... Setting up libcrypt-rc4-perl (2.02-2) ... Setting up poa (2.0+20060928-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libconvert-binary-c-perl (0.78-1+b1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.17) ... Setting up javascript-common (11) ... Package apache2 is not configured yet. Will defer actions by package javascript-common. Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libstring-approx-perl (3.27-1+b4) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up libjson-perl (2.90-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libpadwalker-perl (2.2-2+b1) ... Setting up ruby-minitest (5.9.0-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up mustang (3.2.3-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up libsub-name-perl (0.21-1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up libyaml-libyaml-perl (0.63-2) ... Setting up libpostscript-perl (0.06-2) ... Setting up libparams-classify-perl (0.013-6+b1) ... Setting up libfcgi-perl (0.78-2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libcdt5 (2.38.0-17) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libguard-perl (1.023-1+b2) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up hyphy-common (2.2.7+dfsg-1) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up libcgraph6 (2.38.0-17) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up netbase (5.4) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libdevel-symdump-perl (2.17-1) ... Setting up mafft (7.307-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libcommon-sense-perl (3.74-2) ... Setting up libhpdf-2.2.1 (2.2.1-1.1+b1) ... Setting up libipc-sharelite-perl (0.17-4) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libanyevent-perl (7.130-2) ... Setting up libio-pty-perl (1:1.08-1.1+b2) ... Setting up libencode-locale-perl (1.05-1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up liberror-perl (0.17024-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up librole-tiny-perl (2.000005-1) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libgvpr2 (2.38.0-17) ... Setting up libbio-asn1-entrezgene-perl (1.720-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libfreezethaw-perl (0.5001-1) ... Setting up apache2-utils (2.4.25-3+deb9u9) ... Setting up perl-doc (5.24.1-3+deb9u7) ... Setting up libmodule-runtime-perl (0.014-2) ... Setting up libset-scalar-perl (1.29-2) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up libsvg-perl (2.64-1) ... Setting up mummer (3.23+dfsg-2) ... Setting up libasync-interrupt-perl (1.21-1+b2) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up dialign-tx (1.0.2-9) ... Setting up libio-html-perl (1.001-1) ... Setting up libexporter-tiny-perl (0.042-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libev-perl (4.22-1+b1) ... Setting up exonerate (2.4.0-2) ... Setting up libcarp-clan-perl (6.06-1) ... Setting up libmath-derivative-perl (0.04-2) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libyaml-perl (1.21-1) ... Setting up libparse-recdescent-perl (1.967013+dfsg-1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up ssl-cert (1.0.39) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libtype-tiny-xs-perl (0.012-1+b2) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up libtypes-serialiser-perl (1.0-1) ... Setting up libunicode-map-perl (0.112-11+b3) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libdevel-caller-perl (2.06-1+b4) ... Setting up libxml-writer-perl (0.625-1) ... Setting up sqlite3 (3.16.2-5+deb9u1) ... Setting up libterm-readkey-perl (2.37-1) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up libdrm-intel1:amd64 (2.4.74-1) ... Setting up libalgorithm-diff-xs-perl (0.04-4+b2) ... Setting up libanyevent-http-perl (2.23-1) ... Setting up wise (2.4.1-19) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up libipc-run-perl (0.94-1+deb9u1) ... Setting up bioperl (1.7.1-2) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libbit-vector-perl (7.4-1+b2) ... Setting up rubygems-integration (1.11) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up dbus (1.10.32-0+deb9u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libdbd-mysql-perl (4.041-2) ... Setting up libbio-perl-run-perl (1.7.1-3) ... Setting up libtree-dagnode-perl (1.29-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up python (2.7.13-2) ... Setting up libole-storage-lite-perl (0.19-1+deb9u1) ... Setting up libanyevent-cachedns-perl (0.08-2) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up liblist-moreutils-perl (0.416-1+b1) ... Setting up libhtml-tableextract-perl (2.13-1) ... Setting up libdevel-lexalias-perl (0.05-1+b4) ... Setting up libibverbs1 (1.2.1-2) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libstatistics-descriptive-perl (3.0612-1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libmath-spline-perl (0.02-1) ... Setting up bowtie (1.1.2-6) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libtype-tiny-perl (1.000005-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libjson-xs-perl (3.030-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libcgi-fast-perl (1:2.12-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libbio-coordinate-perl (1.7.1-1) ... Setting up libdate-calc-perl (6.4-1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libxml-filter-buffertext-perl (1.01-5) ... Setting up libace-perl (1.92-4+b1) ... Setting up bioperl-run (1.7.1-3) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libmoo-perl (2.002005-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libavahi-client3:amd64 (0.6.32-2) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libgts-bin (0.7.6+darcs121130-4) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libxml-sax-writer-perl (0.56-1) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libaprutil1-ldap:amd64 (1.5.4-3) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libsvg-graph-perl (0.02-2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libfabric1 (1.4.0-1) ... Setting up libarray-compare-perl (3.0.0-1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libdate-calc-xs-perl (6.4-1+b2) ... Setting up apache2-bin (2.4.25-3+deb9u9) ... Setting up libgd3:amd64 (2.2.4-2+deb9u5) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libgd-perl (2.53-3) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libxml-simple-perl (2.22-1) ... Setting up libgd-svg-perl (0.33-1) ... Setting up libpq5:amd64 (9.6.17-0+deb9u1) ... Setting up libxml-libxslt-perl (1.95-1+b1) ... Setting up perl-tk (1:804.033-1+b3) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up emboss-lib (6.6.0+dfsg-6) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libopenmpi2:amd64 (2.0.2-2) ... Setting up beignet-opencl-icd:amd64 (1.3.0-4) ... Setting up libcups2:amd64 (2.2.1-8+deb9u6) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up apache2 (2.4.25-3+deb9u9) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. info: Executing deferred 'a2enconf javascript-common' for package javascript-common Enabling conf javascript-common. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libbio-graphics-perl (2.40-1) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Setting up blast2 (1:2.6.0-1) ... Setting up libhmsbeagle1v5 (2.1.2+20160831-5) ... Setting up libdbd-pg-perl (3.5.3-1+b2) ... Setting up openmpi-bin (2.0.2-2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libcupsimage2:amd64 (2.2.1-8+deb9u6) ... Setting up emboss (6.6.0+dfsg-6) ... Setting up phyml (3:3.2.0+dfsg-7+b1) ... Setting up libgs9:amd64 (9.26a~dfsg-0+deb9u6) ... Setting up libmime-tools-perl (5.508-1) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up libstaden-read11:amd64 (1.14.8-2) ... Setting up hyphy-mpi (2.2.7+dfsg-1+b2) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up ghostscript (9.26a~dfsg-0+deb9u6) ... Setting up libcupsfilters1:amd64 (1.11.6-3+deb9u1) ... Setting up samtools (1.3.1-3) ... Setting up libbio-scf-perl (1.03-3) ... Setting up libgvc6 (2.38.0-17) ... Setting up graphviz (2.38.0-17) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.6.96) ... Setting up med-config (3.0.1) ... Adding group `med' (GID 153) ... Done. Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up ruby2.3 (2.3.3-1+deb9u8) ... Setting up ruby (1:2.3.3) ... Setting up libwww-perl (6.15-1) ... Setting up libapache2-mod-perl2 (2.0.10-2+deb9u1) ... apache2_invoke: Enable module perl invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libvm-ec2-perl (1.28-2) ... Setting up rake (10.5.0-2+deb9u1) ... Setting up gbrowse (2.56+dfsg-2) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libapache2-reload-perl (0.13-1) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u8) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libapache-dbi-perl (1.12-1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up libsoap-lite-perl (1.20-1) ... Setting up libxml-xpath-perl (1.40-1) ... Setting up libxml-perl (0.08-2) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libxml-dom-xpath-perl (0.14-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-y', 'install', 'gbrowse'] 1m7.0s INFO: Running scripts post_install 1m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_install_exceptions'] 1m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_install_exceptions'] 1m7.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 1m8.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 1m8.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpc_els25h to buster 1m8.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 1m8.3s INFO: Running scripts pre_distupgrade 1m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_exceptions'] 1m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_exceptions'] 1m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'update'] 1m12.8s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 3s (3966 kB/s) Reading package lists... 1m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'update'] 1m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-yf', 'dist-upgrade'] 3m27.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libann0 libgdbm3 libgfortran3 libhmsbeagle1v5 libhpdf-2.2.1 libhts1 libicu57 libmpfr4 libopenmpi2 libperl5.24 libprocps6 libruby2.3 libssl1.0.2 libstaden-read11 libunistring0 rename ruby2.3 sgml-base xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libmariadbclient18 The following NEW packages will be installed: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 cwltool e2fsprogs-l10n fdisk fonts-glyphicons-halflings g++ g++-8 gcc gcc-8 gcc-8-base gdal-data gfortran gfortran-8 ibverbs-providers libaec0 libarmadillo9 libarpack2 libasan5 libatomic1 libb-hooks-op-check-perl libberkeleydb-perl libbinutils libblas3 libbrotli1 libc-ares2 libc-dev-bin libc6-dev libcaf-openmpi-3 libcapture-tiny-perl libcc1-0 libcharls2 libclass-data-inheritable-perl libcoarrays-dev libcoarrays-openmpi-dev libcom-err2 libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdynaloader-functions-perl libedit2 libegl-mesa0 libegl1 libelf1 libepsilon1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexception-class-perl libext2fs2 libfreexl1 libfribidi0 libfyba0 libgbm1 libgcc-8-dev libgdal20 libgdbm-compat4 libgdbm6 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran-8-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgpg-error-l10n libhdf4-0-alt libhdf5-103 libhpdf-2.3.0 libhts2 libhwloc-dev libibverbs-dev libicu63 libimagequant0 libisl19 libitm1 libjansson4 libjs-bootstrap libjson-c3 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 liblab-gamut1 liblapack3 libllvm7 liblmdb0 liblsan0 libltdl-dev libmariadb3 libmbedcrypto3 libmbedtls12 libmbedx509-0 libminizip1 libmpc3 libmpdec2 libmpfr6 libmpx2 libncurses6 libncursesw6 libnetcdf13 libnl-3-dev libnl-route-3-dev libnode64 libnspr4 libnss3 libnuma-dev libodbc1 libogdi3.2 libopenmpi-dev libopenmpi3 libperl5.28 libpmix2 libpoppler82 libpopt0 libprocps7 libproj13 libpsm2-2 libpython2-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libreadonly-perl libref-util-perl libref-util-xs-perl libruby2.5 libseccomp2 libsensors-config libsensors5 libspatialite7 libstaden-read13 libstdc++-8-dev libsub-quote-perl libsub-uplevel-perl libsuperlu5 libsz2 libtbb2 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtinfo6 libtool libtry-tiny-perl libtsan0 libubsan1 libunistring2 liburiparser1 libuv1 libwayland-client0 libwayland-server0 libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb-xfixes0 libxdamage1 libxerces-c3.2 libxmuu1 libxshmfence1 libxxf86vm1 libzstd1 linux-libc-dev m4 manpages manpages-dev mariadb-common ncoils nodejs nodejs-doc odbcinst odbcinst1debian2 openssh-client perl-modules-5.28 proj-bin proj-data python2 python2-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal ruby-xmlrpc ruby2.5 tzdata xauth The following packages will be upgraded: adduser amap-align apache2 apache2-bin apache2-data apache2-utils apt base-files base-passwd bash bedtools beignet-opencl-icd bioperl bioperl-run blast2 blends-common bowtie bsdutils bwa bzip2 ca-certificates clustalo clustalw coreutils dash dbus debconf debian-archive-keyring debianutils dialign dialign-tx dialign-tx-data diffutils dpkg e2fslibs e2fsprogs emboss emboss-data emboss-lib exonerate file findutils fontconfig fontconfig-config fonts-lato fonts-liberation fonts-noto-mono fsa gawk gbrowse ghostscript gpgv graphviz grep gsfonts gzip hmmer hostname hyphy-common hyphy-mpi infernal init-system-helpers kalign krb5-locales libace-perl libacl1 libalgorithm-diff-perl libalgorithm-diff-xs-perl libann0 libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libapt-pkg5.0 libarray-compare-perl libasync-interrupt-perl libattr1 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libbio-asn1-entrezgene-perl libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libblkid1 libbsd-resource-perl libbsd0 libbz2-1.0 libc-bin libc6 libcairo2 libcap-ng0 libcarp-clan-perl libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-inspector-perl libclass-xsaccessor-perl libclone-perl libcomerr2 libcommon-sense-perl libconvert-binary-c-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdb5.3 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdebconfclient0 libdevel-caller-perl libdevel-lexalias-perl libdevel-symdump-perl libdivsufsort3 libdrm-intel1 libdrm2 liberror-perl libev-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libfdisk1 libffi6 libfile-slurp-tiny-perl libfontconfig1 libfreetype6 libfreezethaw-perl libgcc1 libgcrypt20 libgd-perl libgd-svg-perl libgd3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpg-error0 libgpm2 libgraph-perl libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libguard-perl libgvc6 libgvpr2 libharfbuzz0b libhmsbeagle1v5 libhogweed4 libhtml-parser-perl libhtml-tableextract-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc5 libibverbs1 libidn11 libidn2-0 libijs-0.35 libio-pty-perl libio-socket-ssl-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjbig2dec0 libjpeg62-turbo libjs-jquery libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl libltdl7 liblwp-protocol-https-perl liblz4-1 liblzma5 libmagic-mgc libmagic1 libmath-derivative-perl libmath-spline-perl libmime-tools-perl libmodule-runtime-perl libmoo-perl libmount1 libncurses5 libncursesw5 libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libole-storage-lite-perl libopenjp2-7 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpadwalker-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpixman-1-0 libpng16-16 libpostscript-perl libpq5 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 librdmacm1 libreadline7 librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsigsegv2 libsm6 libsmartcols1 libsoap-lite-perl libsort-naturally-perl libsqlite3-0 libss2 libssh2-1 libssl1.1 libstatistics-descriptive-perl libstdc++6 libstrictures-perl libstring-approx-perl libsub-name-perl libsvg-graph-perl libsvg-perl libsystemd0 libtask-weaken-perl libtasn1-6 libterm-readkey-perl libtext-iconv-perl libthai-data libthai0 libtiff5 libtimedate-perl libtinfo5 libtree-dagnode-perl libtype-tiny-perl libtype-tiny-xs-perl libudev1 libunicode-map-perl liburi-perl libuuid1 libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdot4 libxft2 libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl login lsb-base lynx lynx-common mafft maq med-config mime-support mount multiarch-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncurses-base ncurses-bin netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssl passwd perl perl-base perl-doc perl-tk phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python python-minimal python2.7 python2.7-minimal rake raxml readline-common rename ruby ruby-did-you-mean ruby-minitest ruby-power-assert ruby-test-unit rubygems-integration samtools sed sensible-utils shared-mime-info sim4 sqlite3 sysvinit-utils t-coffee tar tigr-glimmer tm-align ucf unzip util-linux wise wise-data xdg-user-dirs xml-core xz-utils zlib1g 405 upgraded, 255 newly installed, 1 to remove and 0 not upgraded. Need to get 419 MB of archives. After this operation, 843 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:4 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:7 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:10 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:22 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:26 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:33 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:37 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:38 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:41 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:42 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:45 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:46 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:47 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:50 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:51 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:52 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:53 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:54 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:58 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:59 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:60 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:61 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:62 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:63 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:70 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:71 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:72 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:73 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:74 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:75 http://deb.debian.org/debian buster/main amd64 perl-doc all 5.28.1-6+deb10u1 [7654 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b2 [38.0 kB] Get:77 http://deb.debian.org/debian buster/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libguard-perl amd64 1.023-1+b5 [15.9 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libdbi-perl amd64 1.642-1+deb10u2 [775 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libstaden-read13 amd64 1.14.11-6 [280 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libbio-scf-perl amd64 1.03-4 [20.6 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libfcgi-perl amd64 0.78-2+b3 [39.0 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:89 http://deb.debian.org/debian buster/main amd64 mysql-common all 5.8+1.0.5 [7324 B] Get:90 http://deb.debian.org/debian buster/main amd64 mariadb-common all 1:10.3.34-0+deb10u1 [33.0 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1 [340 kB] Get:92 http://deb.debian.org/debian buster/main amd64 emboss-lib amd64 6.6.0+dfsg-7+b1 [2786 kB] Get:93 http://deb.debian.org/debian buster/main amd64 emboss-data all 6.6.0+dfsg-7 [61.1 MB] Get:94 http://deb.debian.org/debian buster/main amd64 emboss amd64 6.6.0+dfsg-7+b1 [1073 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libmariadb3 amd64 1:10.3.34-0+deb10u1 [173 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libdbd-mysql-perl amd64 4.050-2 [121 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libpadwalker-perl amd64 2.3-1+b1 [20.1 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libstring-approx-perl amd64 3.28-1+b1 [40.3 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libconvert-binary-c-perl amd64 0.78-1+b4 [272 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libbit-vector-perl amd64 7.4-1+b5 [146 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libace-perl amd64 1.92-8+b1 [287 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:107 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:108 http://deb.debian.org/debian buster/main amd64 perl-tk amd64 1:804.033-2+b3 [1952 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libtext-iconv-perl amd64 1.7-5+b7 [15.4 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libxml-libxslt-perl amd64 1.96-1+b1 [47.5 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libbsd-resource-perl amd64 1.2911-1+b3 [33.8 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-xs-perl amd64 0.04-5+b1 [11.8 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libterm-readkey-perl amd64 2.38-1 [27.4 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libgd-perl amd64 2.71-2 [140 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libdevel-caller-perl amd64 2.06-2+b1 [12.1 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libunicode-map-perl amd64 0.112-12+b1 [145 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libdbd-pg-perl amd64 3.7.4-3 [207 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libtype-tiny-xs-perl amd64 0.014-1+b1 [24.4 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libjson-xs-perl amd64 3.040-1+b1 [91.0 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libdate-calc-xs-perl amd64 6.4-1+b4 [55.1 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libev-perl amd64 4.25-1 [252 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b7 [28.7 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libasync-interrupt-perl amd64 1.24-1+b1 [34.4 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:125 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+deb10u1 [308 kB] Get:126 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libanyevent-perl amd64 7.140-3 [393 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:130 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libapache2-mod-perl2 amd64 2.0.10-3 [885 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libdbd-sqlite3-perl amd64 1.62-3 [177 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libipc-sharelite-perl amd64 0.17-4+b3 [24.6 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libdevel-lexalias-perl amd64 0.05-2+b1 [9068 B] Get:135 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:136 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:137 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libcommon-sense-perl amd64 3.74-2+b7 [24.0 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:143 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:147 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:152 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:155 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:158 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:159 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:160 http://deb.debian.org/debian buster/main amd64 fonts-liberation all 1:1.07.4-9 [827 kB] Get:161 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:162 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:163 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:164 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:166 http://deb.debian.org/debian buster/main amd64 libpq5 amd64 11.16-0+deb10u1 [172 kB] Get:167 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:168 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:169 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:170 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:171 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:174 http://deb.debian.org/debian buster/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libcarp-clan-perl all 6.07-1 [15.3 kB] Get:177 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:178 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:182 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libhttp-daemon-perl all 6.01-3 [16.6 kB] Get:184 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:185 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:186 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:187 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:188 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:189 http://deb.debian.org/debian buster/main amd64 libxmlrpc-lite-perl all 0.717-2 [22.3 kB] Get:190 http://deb.debian.org/debian buster/main amd64 libclass-inspector-perl all 1.32-1 [19.1 kB] Get:191 http://deb.debian.org/debian buster/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:192 http://deb.debian.org/debian buster/main amd64 libmime-tools-perl all 5.509-1 [212 kB] Get:193 http://deb.debian.org/debian buster/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b7 [38.1 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libtask-weaken-perl all 1.06-1 [9252 B] Get:195 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get:197 http://deb.debian.org/debian buster/main amd64 libsoap-lite-perl all 1.27-1 [258 kB] Get:198 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:200 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get:201 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get:202 http://deb.debian.org/debian buster/main amd64 libaprutil1-ldap amd64 1.6.1-4 [16.8 kB] Get:203 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:204 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:205 http://deb.debian.org/debian buster/main amd64 sqlite3 amd64 3.27.2-3+deb10u1 [940 kB] Get:206 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:207 http://deb.debian.org/debian buster/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-4 [18.7 kB] Get:208 http://deb.debian.org/debian buster/main amd64 libaprutil1 amd64 1.6.1-4 [91.8 kB] Get:209 http://deb.debian.org/debian buster/main amd64 libapr1 amd64 1.6.5-1+b1 [102 kB] Get:210 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get:211 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:212 http://deb.debian.org/debian buster/main amd64 libjansson4 amd64 2.12-1 [38.0 kB] Get:213 http://deb.debian.org/debian buster/main amd64 apache2 amd64 2.4.38-3+deb10u8 [252 kB] Get:214 http://deb.debian.org/debian buster/main amd64 apache2-data all 2.4.38-3+deb10u8 [165 kB] Get:215 http://deb.debian.org/debian buster/main amd64 apache2-utils amd64 2.4.38-3+deb10u8 [238 kB] Get:216 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:217 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:218 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:219 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:220 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:221 http://deb.debian.org/debian buster/main amd64 apache2-bin amd64 2.4.38-3+deb10u8 [1309 kB] Get:222 http://deb.debian.org/debian buster/main amd64 libdevel-symdump-perl all 2.18-3 [17.3 kB] Get:223 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:224 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:225 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:226 http://deb.debian.org/debian buster/main amd64 libncurses5 amd64 6.1+20181013-2+deb10u2 [96.2 kB] Get:227 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:228 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:229 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:230 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:231 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:232 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:233 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:234 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:235 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:236 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:237 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:238 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:239 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:240 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:241 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:242 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:243 http://deb.debian.org/debian buster/main amd64 gawk amd64 1:4.2.1+dfsg-1 [660 kB] Get:244 http://deb.debian.org/debian buster/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:245 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:246 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:247 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:248 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:249 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:250 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:251 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:252 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:253 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:254 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:255 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:256 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:257 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:258 http://deb.debian.org/debian buster/main amd64 dbus amd64 1.12.20-0+deb10u1 [236 kB] Get:259 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get:260 http://deb.debian.org/debian buster/main amd64 libapparmor1 amd64 2.13.2-10 [94.7 kB] Get:261 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:262 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:263 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:264 http://deb.debian.org/debian buster/main amd64 krb5-locales all 1.17-3+deb10u4 [95.6 kB] Get:265 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:266 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:267 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:268 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get:269 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:270 http://deb.debian.org/debian buster/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-1 [131 kB] Get:271 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:272 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:273 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get:274 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:275 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get:276 http://deb.debian.org/debian buster/main amd64 bedtools amd64 2.27.1+dfsg-4 [593 kB] Get:277 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:278 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:279 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:280 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:281 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:282 http://deb.debian.org/debian buster/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get:283 http://deb.debian.org/debian buster/main amd64 libgbm1 amd64 18.3.6-2+deb10u1 [67.8 kB] Get:284 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get:285 http://deb.debian.org/debian buster/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get:286 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get:287 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:288 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:289 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:290 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:291 http://deb.debian.org/debian buster/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get:292 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:293 http://deb.debian.org/debian buster/main amd64 libegl-mesa0 amd64 18.3.6-2+deb10u1 [135 kB] Get:294 http://deb.debian.org/debian buster/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get:295 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:296 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:297 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:298 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:299 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:300 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:301 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:302 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get:303 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:304 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:305 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get:306 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get:307 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:308 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:309 http://deb.debian.org/debian buster/main amd64 beignet-opencl-icd amd64 1.3.2-6+b10 [14.5 MB] Get:310 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:311 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:312 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:313 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:314 http://deb.debian.org/debian buster/main amd64 libbio-perl-run-perl all 1.7.2-4 [748 kB] Get:315 http://deb.debian.org/debian buster/main amd64 bioperl-run all 1.7.2-4 [45.2 kB] Get:316 http://deb.debian.org/debian buster/main amd64 bioperl all 1.7.2-3 [418 kB] Get:317 http://deb.debian.org/debian buster/main amd64 libbio-perl-perl all 1.7.2-3 [4553 kB] Get:318 http://deb.debian.org/debian buster/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:319 http://deb.debian.org/debian buster/main amd64 libdevel-stacktrace-perl all 2.0300-1 [28.0 kB] Get:320 http://deb.debian.org/debian buster/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:321 http://deb.debian.org/debian buster/main amd64 libtest-deep-perl all 1.128-1 [48.8 kB] Get:322 http://deb.debian.org/debian buster/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:323 http://deb.debian.org/debian buster/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:324 http://deb.debian.org/debian buster/main amd64 libtest-differences-perl all 0.65-1 [18.1 kB] Get:325 http://deb.debian.org/debian buster/main amd64 libsub-uplevel-perl all 0.2800-1 [16.3 kB] Get:326 http://deb.debian.org/debian buster/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:327 http://deb.debian.org/debian buster/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:328 http://deb.debian.org/debian buster/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:329 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:330 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:331 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:332 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:333 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:334 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:335 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:336 http://deb.debian.org/debian buster/main amd64 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] Get:337 http://deb.debian.org/debian buster/main amd64 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] Get:338 http://deb.debian.org/debian buster/main amd64 blends-common all 0.7.2 [24.7 kB] Get:339 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:340 http://deb.debian.org/debian buster/main amd64 libtbb2 amd64 2018~U6-4 [147 kB] Get:341 http://deb.debian.org/debian buster/main amd64 bowtie amd64 1.2.2+dfsg-4 [1670 kB] Get:342 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get:343 http://deb.debian.org/debian buster/main amd64 clustalo amd64 1.2.4-2 [265 kB] Get:344 http://deb.debian.org/debian buster/main amd64 clustalw amd64 2.1+lgpl-6 [282 kB] Get:345 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:346 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:347 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:348 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:349 http://deb.debian.org/debian buster/main amd64 python3-typed-ast amd64 1.3.1-1 [138 kB] Get:350 http://deb.debian.org/debian buster/main amd64 python3-mypy-extensions all 0.4.1-1 [5234 B] Get:351 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get:352 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:353 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:354 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:355 http://deb.debian.org/debian buster/main amd64 python3-mypy all 0.670-2 [781 kB] Get:356 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:357 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:358 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u4 [1163 kB] Get:359 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:360 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get:361 http://deb.debian.org/debian buster/main amd64 python3-isodate all 0.6.0-1 [24.9 kB] Get:362 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:363 http://deb.debian.org/debian buster/main amd64 python3-rdflib all 4.2.2-2 [258 kB] Get:364 http://deb.debian.org/debian buster/main amd64 python3-prov all 1.5.2-1 [94.4 kB] Get:365 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:366 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:367 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:368 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:369 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:370 http://deb.debian.org/debian buster/main amd64 python3-ruamel.yaml amd64 0.15.34-1+b1 [248 kB] Get:371 http://deb.debian.org/debian buster/main amd64 python3-cachecontrol all 0.11.7-1 [15.2 kB] Get:372 http://deb.debian.org/debian buster/main amd64 python3-lockfile all 1:0.12.2-2 [17.1 kB] Get:373 http://deb.debian.org/debian buster/main amd64 python3-mistune all 0.8.4-1 [16.1 kB] Get:374 http://deb.debian.org/debian buster/main amd64 python3-rdflib-jsonld all 0.4.0-4 [12.3 kB] Get:375 http://deb.debian.org/debian buster/main amd64 python3-typing-extensions all 3.7.2-1 [23.0 kB] Get:376 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:377 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:378 http://deb.debian.org/debian buster/main amd64 python3-schema-salad all 3.0.20181206233650-2 [272 kB] Get:379 http://deb.debian.org/debian buster/main amd64 python3-shellescape all 3.4.1-3 [4800 B] Get:380 http://deb.debian.org/debian buster/main amd64 cwltool all 1.0.20181217162649+dfsg-10 [176 kB] Get:381 http://deb.debian.org/debian buster/main amd64 dialign amd64 2.2.1-10 [139 kB] Get:382 http://deb.debian.org/debian buster/main amd64 dialign-tx amd64 1.0.2-12 [76.9 kB] Get:383 http://deb.debian.org/debian buster/main amd64 dialign-tx-data all 1.0.2-12 [869 kB] Get:384 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:385 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:386 http://deb.debian.org/debian buster/main amd64 exonerate amd64 2.4.0-4 [1544 kB] Get:387 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:388 http://deb.debian.org/debian buster/main amd64 fonts-noto-mono all 20181227-1 [83.1 kB] Get:389 http://deb.debian.org/debian buster/main amd64 mummer amd64 3.23+dfsg-4 [809 kB] Get:390 http://deb.debian.org/debian buster/main amd64 fsa amd64 1.15.9+dfsg-4 [740 kB] Get:391 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:392 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:393 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:394 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:395 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:396 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:397 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:398 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:399 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:400 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:401 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:402 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:403 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:404 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:405 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:406 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:407 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:408 http://deb.debian.org/debian buster/main amd64 libbio-graphics-perl all 2.40-3 [610 kB] Get:409 http://deb.debian.org/debian buster/main amd64 libbio-coordinate-perl all 1.7.1-3 [56.0 kB] Get:410 http://deb.debian.org/debian buster/main amd64 libjson-perl all 4.02000-1 [88.8 kB] Get:411 http://deb.debian.org/debian buster/main amd64 libstatistics-descriptive-perl all 3.0702-1 [64.8 kB] Get:412 http://deb.debian.org/debian buster/main amd64 gbrowse all 2.56+dfsg-4 [2372 kB] Get:413 http://deb.debian.org/debian buster/main amd64 gdal-data all 2.4.0+dfsg-1 [744 kB] Get:414 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:415 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get:416 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get:417 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get:418 http://deb.debian.org/debian buster/main amd64 ghostscript amd64 9.27~dfsg-2+deb10u5 [95.0 kB] Get:419 http://deb.debian.org/debian buster/main amd64 libgs9 amd64 9.27~dfsg-2+deb10u5 [2198 kB] Get:420 http://deb.debian.org/debian buster/main amd64 libgs9-common all 9.27~dfsg-2+deb10u5 [5136 kB] Get:421 http://deb.debian.org/debian buster/main amd64 libcupsimage2 amd64 2.2.10-6+deb10u6 [133 kB] Get:422 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get:423 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get:424 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get:425 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u6 [325 kB] Get:426 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:427 http://deb.debian.org/debian buster/main amd64 libijs-0.35 amd64 0.35-14 [18.3 kB] Get:428 http://deb.debian.org/debian buster/main amd64 libjbig2dec0 amd64 0.16-1+deb10u1 [62.2 kB] Get:429 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:430 http://deb.debian.org/debian buster/main amd64 libopenjp2-7 amd64 2.3.0-2+deb10u2 [158 kB] Get:431 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:432 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:433 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:434 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:435 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:436 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get:437 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get:438 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:439 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:440 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:441 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:442 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:443 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:444 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:445 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:446 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:447 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:448 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get:449 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get:450 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get:451 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get:452 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get:453 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:454 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:455 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:456 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get:457 http://deb.debian.org/debian buster/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3125 kB] Get:458 http://deb.debian.org/debian buster/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get:459 http://deb.debian.org/debian buster/main amd64 hmmer amd64 3.2.1+dfsg-1 [1169 kB] Get:460 http://deb.debian.org/debian buster/main amd64 hyphy-common all 2.3.14+dfsg-1 [661 kB] Get:461 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:462 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:463 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:464 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:465 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:466 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:467 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:468 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:469 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:470 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:471 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:472 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:473 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:474 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:475 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get:476 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get:477 http://deb.debian.org/debian buster/main amd64 hyphy-mpi amd64 2.3.14+dfsg-1 [919 kB] Get:478 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get:479 http://deb.debian.org/debian buster/main amd64 infernal amd64 1.1.2-2 [22.1 MB] Get:480 http://deb.debian.org/debian buster/main amd64 kalign amd64 1:2.03+20110620-5 [92.9 kB] Get:481 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:482 http://deb.debian.org/debian buster/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:483 http://deb.debian.org/debian buster/main amd64 libanyevent-http-perl all 2.24-1 [35.5 kB] Get:484 http://deb.debian.org/debian buster/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:485 http://deb.debian.org/debian buster/main amd64 libapache2-reload-perl all 0.13-2 [17.0 kB] Get:486 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:487 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:488 http://deb.debian.org/debian buster/main amd64 libarpack2 amd64 3.7.0-2 [102 kB] Get:489 http://deb.debian.org/debian buster/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [161 kB] Get:490 http://deb.debian.org/debian buster/main amd64 libarmadillo9 amd64 1:9.200.7+dfsg-1 [88.6 kB] Get:491 http://deb.debian.org/debian buster/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:492 http://deb.debian.org/debian buster/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:493 http://deb.debian.org/debian buster/main amd64 libstrictures-perl all 2.000005-1 [18.3 kB] Get:494 http://deb.debian.org/debian buster/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:495 http://deb.debian.org/debian buster/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get:496 http://deb.debian.org/debian buster/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:497 http://deb.debian.org/debian buster/main amd64 libarray-compare-perl all 3.0.2-1 [14.5 kB] Get:498 http://deb.debian.org/debian buster/main amd64 libberkeleydb-perl amd64 0.55-2 [121 kB] Get:499 http://deb.debian.org/debian buster/main amd64 libbio-asn1-entrezgene-perl all 1.720-2 [38.7 kB] Get:500 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get:501 http://deb.debian.org/debian buster/main amd64 libcaf-openmpi-3 amd64 2.4.0-2 [35.6 kB] Get:502 http://deb.debian.org/debian buster/main amd64 libcgi-fast-perl all 1:2.13-1 [11.4 kB] Get:503 http://deb.debian.org/debian buster/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:504 http://deb.debian.org/debian buster/main amd64 libcharls2 amd64 2.0.0+dfsg-1 [64.3 kB] Get:505 http://deb.debian.org/debian buster/main amd64 libcoarrays-dev amd64 2.4.0-2 [29.1 kB] Get:506 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get:507 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:508 http://deb.debian.org/debian buster/main amd64 libcoarrays-openmpi-dev amd64 2.4.0-2 [35.2 kB] Get:509 http://deb.debian.org/debian buster/main amd64 libcrypt-rc4-perl all 2.02-3 [7704 B] Get:510 http://deb.debian.org/debian buster/main amd64 libcupsfilters1 amd64 1.21.6-5 [172 kB] Get:511 http://deb.debian.org/debian buster/main amd64 libdap25 amd64 3.20.3-1 [557 kB] Get:512 http://deb.debian.org/debian buster/main amd64 libdapclient6v5 amd64 3.20.3-1 [202 kB] Get:513 http://deb.debian.org/debian buster/main amd64 libdapserver7v5 amd64 3.20.3-1 [131 kB] Get:514 http://deb.debian.org/debian buster/main amd64 libdata-dump-perl all 1.23-1 [29.5 kB] Get:515 http://deb.debian.org/debian buster/main amd64 libdate-manip-perl all 6.76-1 [930 kB] Get:516 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:517 http://deb.debian.org/debian buster/main amd64 libpopt0 amd64 1.16-12 [49.4 kB] Get:518 http://deb.debian.org/debian buster/main amd64 libepsilon1 amd64 0.9.2+dfsg-4 [42.0 kB] Get:519 http://deb.debian.org/debian buster/main amd64 liberror-perl all 0.17027-2 [30.9 kB] Get:520 http://deb.debian.org/debian buster/main amd64 libfile-slurp-tiny-perl all 0.004-1 [7288 B] Get:521 http://deb.debian.org/debian buster/main amd64 libfreexl1 amd64 1.0.5-3 [34.1 kB] Get:522 http://deb.debian.org/debian buster/main amd64 libfreezethaw-perl all 0.5001-2 [16.8 kB] Get:523 http://deb.debian.org/debian buster/main amd64 libfyba0 amd64 4.1.1-6 [114 kB] Get:524 http://deb.debian.org/debian buster/main amd64 libsvg-perl all 2.84-1 [67.9 kB] Get:525 http://deb.debian.org/debian buster/main amd64 libgd-svg-perl all 0.33-2 [60.3 kB] Get:526 http://deb.debian.org/debian buster/main amd64 libgeos-3.7.1 amd64 3.7.1-1 [735 kB] Get:527 http://deb.debian.org/debian buster/main amd64 libgeos-c1v5 amd64 3.7.1-1 [299 kB] Get:528 http://deb.debian.org/debian buster/main amd64 proj-data all 5.2.0-1 [6986 kB] Get:529 http://deb.debian.org/debian buster/main amd64 libproj13 amd64 5.2.0-1 [225 kB] Get:530 http://deb.debian.org/debian buster/main amd64 libgeotiff2 amd64 1.4.3-1 [72.0 kB] Get:531 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get:532 http://deb.debian.org/debian buster/main amd64 libhdf4-0-alt amd64 4.2.13-4 [277 kB] Get:533 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:534 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:535 http://deb.debian.org/debian buster/main amd64 libjson-c3 amd64 0.12.1+ds-2+deb10u1 [27.3 kB] Get:536 http://deb.debian.org/debian buster/main amd64 libminizip1 amd64 1.1-8+b1 [20.4 kB] Get:537 http://deb.debian.org/debian buster/main amd64 liburiparser1 amd64 0.9.1-1+deb10u1 [48.1 kB] Get:538 http://deb.debian.org/debian buster/main amd64 libkmlbase1 amd64 1.3.0-7 [48.9 kB] Get:539 http://deb.debian.org/debian buster/main amd64 libkmldom1 amd64 1.3.0-7 [172 kB] Get:540 http://deb.debian.org/debian buster/main amd64 libkmlengine1 amd64 1.3.0-7 [78.4 kB] Get:541 http://deb.debian.org/debian buster/main amd64 libkmlconvenience1 amd64 1.3.0-7 [50.1 kB] Get:542 http://deb.debian.org/debian buster/main amd64 libkmlregionator1 amd64 1.3.0-7 [25.1 kB] Get:543 http://deb.debian.org/debian buster/main amd64 libkmlxsd1 amd64 1.3.0-7 [34.6 kB] Get:544 http://deb.debian.org/debian buster/main amd64 libnetcdf13 amd64 1:4.6.2-1 [403 kB] Get:545 http://deb.debian.org/debian buster/main amd64 libodbc1 amd64 2.3.6-0.1 [223 kB] Get:546 http://deb.debian.org/debian buster/main amd64 libogdi3.2 amd64 3.2.1+ds-4 [241 kB] Get:547 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:548 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u5 [1160 kB] Get:549 http://deb.debian.org/debian buster/main amd64 libpoppler82 amd64 0.71.0-5 [1507 kB] Get:550 http://deb.debian.org/debian buster/main amd64 libqhull7 amd64 2015.2-4 [196 kB] Get:551 http://deb.debian.org/debian buster/main amd64 libspatialite7 amd64 4.3.0a-5+b2 [1256 kB] Get:552 http://deb.debian.org/debian buster/main amd64 libxerces-c3.2 amd64 3.2.2+debian-1+deb10u1 [886 kB] Get:553 http://deb.debian.org/debian buster/main amd64 odbcinst amd64 2.3.6-0.1 [48.4 kB] Get:554 http://deb.debian.org/debian buster/main amd64 odbcinst1debian2 amd64 2.3.6-0.1 [78.1 kB] Get:555 http://deb.debian.org/debian buster/main amd64 libgdal20 amd64 2.4.0+dfsg-1+b1 [6171 kB] Get:556 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get:557 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:558 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:559 http://deb.debian.org/debian buster/main amd64 libgraph-perl all 1:0.9704-1 [119 kB] Get:560 http://deb.debian.org/debian buster/main amd64 libhmsbeagle1v5 amd64 3.1.2+dfsg-6 [195 kB] Get:561 http://deb.debian.org/debian buster/main amd64 libhtml-tableextract-perl all 2.15-1 [30.2 kB] Get:562 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get:563 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get:564 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get:565 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get:566 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get:567 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get:568 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get:569 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:570 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:571 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:572 http://deb.debian.org/debian buster/main amd64 libmath-derivative-perl all 1.01-1 [8956 B] Get:573 http://deb.debian.org/debian buster/main amd64 libmath-spline-perl all 0.02-2 [7644 B] Get:574 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get:575 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get:576 http://deb.debian.org/debian buster/main amd64 libole-storage-lite-perl all 0.19-2+deb10u1 [24.0 kB] Get:577 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get:578 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:579 http://deb.debian.org/debian buster/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get:580 http://deb.debian.org/debian buster/main amd64 libpostscript-perl all 0.06-3 [25.9 kB] Get:581 http://deb.debian.org/debian buster/main amd64 libreadonly-perl all 2.050-1 [22.7 kB] Get:582 http://deb.debian.org/debian buster/main amd64 libref-util-perl all 0.204-1 [17.1 kB] Get:583 http://deb.debian.org/debian buster/main amd64 libref-util-xs-perl amd64 0.117-1+b1 [14.0 kB] Get:584 http://deb.debian.org/debian buster/main amd64 rubygems-integration all 1.11+deb10u1 [5212 B] Get:585 http://deb.debian.org/debian buster/main amd64 ruby2.5 amd64 2.5.5-3+deb10u4 [400 kB] Get:586 http://deb.debian.org/debian buster/main amd64 ruby amd64 1:2.5.1 [11.3 kB] Get:587 http://deb.debian.org/debian buster/main amd64 rake all 12.3.1-3+deb10u1 [67.1 kB] Get:588 http://deb.debian.org/debian buster/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get:589 http://deb.debian.org/debian buster/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get:590 http://deb.debian.org/debian buster/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get:591 http://deb.debian.org/debian buster/main amd64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get:592 http://deb.debian.org/debian buster/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:593 http://deb.debian.org/debian buster/main amd64 libruby2.5 amd64 2.5.5-3+deb10u4 [3442 kB] Get:594 http://deb.debian.org/debian buster/main amd64 libsasl2-modules amd64 2.1.27+dfsg-1+deb10u2 [104 kB] Get:595 http://deb.debian.org/debian buster/main amd64 libsort-naturally-perl all 1.03-2 [13.5 kB] Get:596 http://deb.debian.org/debian buster/main amd64 libtree-dagnode-perl all 1.31-1 [61.4 kB] Get:597 http://deb.debian.org/debian buster/main amd64 libsvg-graph-perl all 0.02-3 [114 kB] Get:598 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get:599 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get:600 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:601 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:602 http://deb.debian.org/debian buster/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:603 http://deb.debian.org/debian buster/main amd64 libxml-dom-xpath-perl all 0.14-3 [9066 B] Get:604 http://deb.debian.org/debian buster/main amd64 libxml-filter-buffertext-perl all 1.01-6 [6916 B] Get:605 http://deb.debian.org/debian buster/main amd64 libxml-perl all 0.08-3 [93.3 kB] Get:606 http://deb.debian.org/debian buster/main amd64 libxml-sax-expat-perl all 0.51-1 [12.0 kB] Get:607 http://deb.debian.org/debian buster/main amd64 libxml-sax-writer-perl all 0.57-1 [22.6 kB] Get:608 http://deb.debian.org/debian buster/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:609 http://deb.debian.org/debian buster/main amd64 libxml-twig-perl all 1:3.50-1.1 [179 kB] Get:610 http://deb.debian.org/debian buster/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get:611 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:612 http://deb.debian.org/debian buster/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:613 http://deb.debian.org/debian buster/main amd64 lynx-common all 2.8.9rel.1-3+deb10u1 [1212 kB] Get:614 http://deb.debian.org/debian buster/main amd64 lynx amd64 2.8.9rel.1-3+deb10u1 [642 kB] Get:615 http://deb.debian.org/debian buster/main amd64 mafft amd64 7.407-2 [999 kB] Get:616 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:617 http://deb.debian.org/debian buster/main amd64 maq amd64 0.7.1-8 [313 kB] Get:618 http://deb.debian.org/debian buster/main amd64 med-config all 3.3 [18.7 kB] Get:619 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:620 http://deb.debian.org/debian buster/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get:621 http://deb.debian.org/debian buster/main amd64 mustang amd64 3.2.3-3 [105 kB] Get:622 http://deb.debian.org/debian buster/main amd64 ncoils amd64 2002-7 [21.9 kB] Get:623 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get:624 http://deb.debian.org/debian buster/main amd64 nodejs-doc all 10.24.0~dfsg-1~deb10u1 [974 kB] Get:625 http://deb.debian.org/debian buster/main amd64 phylip amd64 1:3.697+dfsg-1 [910 kB] Get:626 http://deb.debian.org/debian buster/main amd64 phyml amd64 3:3.3.20180621-2 [1653 kB] Get:627 http://deb.debian.org/debian buster/main amd64 poa amd64 2.0+20060928-7 [53.0 kB] Get:628 http://deb.debian.org/debian buster/main amd64 prank amd64 0.0.170427+dfsg-2 [375 kB] Get:629 http://deb.debian.org/debian buster/main amd64 primer3 amd64 2.4.0-2 [180 kB] Get:630 http://deb.debian.org/debian buster/main amd64 probalign amd64 1.4-8 [66.2 kB] Get:631 http://deb.debian.org/debian buster/main amd64 probcons amd64 1.12-12 [116 kB] Get:632 http://deb.debian.org/debian buster/main amd64 proda amd64 1.0-12 [63.7 kB] Get:633 http://deb.debian.org/debian buster/main amd64 proj-bin amd64 5.2.0-1 [105 kB] Get:634 http://deb.debian.org/debian buster/main amd64 psmisc amd64 23.2-1+deb10u1 [126 kB] Get:635 http://deb.debian.org/debian buster/main amd64 publicsuffix all 20220811.1734-0+deb10u1 [127 kB] Get:636 http://deb.debian.org/debian buster/main amd64 python3-soupsieve all 1.8+dfsg-1 [27.6 kB] Get:637 http://deb.debian.org/debian buster/main amd64 python3-bs4 all 4.7.1-1 [94.1 kB] Get:638 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:639 http://deb.debian.org/debian buster/main amd64 python3-gdal amd64 2.4.0+dfsg-1+b1 [601 kB] Get:640 http://deb.debian.org/debian buster/main amd64 python3-webencodings all 0.5.1-1 [10.9 kB] Get:641 http://deb.debian.org/debian buster/main amd64 python3-html5lib all 1.0.1-1 [89.5 kB] Get:642 http://deb.debian.org/debian buster/main amd64 python3-olefile all 0.46-1 [35.9 kB] Get:643 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:644 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:645 http://deb.debian.org/debian buster/main amd64 python3-sparqlwrapper all 1.8.2-0.1 [28.4 kB] Get:646 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get:647 http://deb.debian.org/debian buster/main amd64 raxml amd64 8.2.12+dfsg-1 [1275 kB] Get:648 http://deb.debian.org/debian buster/main amd64 rename all 1.10-1 [17.2 kB] Get:649 http://deb.debian.org/debian buster/main amd64 samtools amd64 1.9-4 [443 kB] Get:650 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get:651 http://deb.debian.org/debian buster/main amd64 sim4 amd64 0.0.20121010-5 [396 kB] Get:652 http://deb.debian.org/debian buster/main amd64 t-coffee amd64 12.00.7fb08c2-4 [1520 kB] Get:653 http://deb.debian.org/debian buster/main amd64 tigr-glimmer amd64 3.02b-2 [282 kB] Get:654 http://deb.debian.org/debian buster/main amd64 tm-align amd64 20170708+dfsg-2 [871 kB] Get:655 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:656 http://deb.debian.org/debian buster/main amd64 wise amd64 2.4.1-21 [978 kB] Get:657 http://deb.debian.org/debian buster/main amd64 wise-data all 2.4.1-21 [109 kB] Get:658 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] Get:659 http://deb.debian.org/debian buster/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:660 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 419 MB in 19s (21.5 MB/s) (Reading database ... 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Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29114 files and directories currently installed.) Preparing to unpack .../lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) over (9.20161125) ... Preparing to unpack .../tar_1.30+dfsg-6_amd64.deb ... Unpacking tar (1.30+dfsg-6) over (1.29b-1.1) ... Setting up tar (1.30+dfsg-6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29110 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-5_amd64.deb ... Unpacking dash (0.5.10.2-5) over (0.5.8-2.4) ... Setting up dash (0.5.10.2-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29116 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fslibs:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libext2fs2:amd64. Preparing to unpack .../libext2fs2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.5-1+deb10u3) ... Setting up libext2fs2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29119 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fsprogs (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.44.5-1+deb10u3) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 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Unpacking xml-core (0.18+nmu1) over (0.17) ... Setting up perl-modules-5.28 (5.28.1-6+deb10u1) ... Setting up libgs9-common (9.27~dfsg-2+deb10u5) ... Setting up libxdot4 (2.40.1-6+deb10u1) ... Setting up liblmdb0:amd64 (0.9.22-1) ... Setting up libtext-iconv-perl (1.7-5+b7) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libwayland-server0:amd64 (1.16.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Setting up libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up mysql-common (5.8+1.0.5) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libapparmor1:amd64 (2.13.2-10) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up apt (1.8.2.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Setting up fonts-lato (2.0-2) ... Setting up libgpm2:amd64 (1.20.7-5) ... Setting up libxcb-xfixes0:amd64 (1.13.1-2) ... Setting up mime-support (3.62) ... Installing new version of config file /etc/mime.types ... Setting up proj-data (5.2.0-1) ... Setting up fonts-noto-mono (20181227-1) ... Setting up e2fslibs:amd64 (1.44.5-1+deb10u3) ... Setting up probcons (1.12-12) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up poa (2.0+20060928-7) ... Setting up xdg-user-dirs (0.17-2) ... Removing obsolete conffile /etc/X11/Xsession.d/60xdg-user-dirs-update ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up e2fsprogs-l10n (1.44.5-1+deb10u3) ... Setting up libcharls2:amd64 (2.0.0+dfsg-1) ... Setting up libminizip1:amd64 (1.1-8+b1) ... Setting up psmisc (23.2-1+deb10u1) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up manpages (4.16-2) ... Setting up bwa (0.7.17-3) ... Setting up libglvnd0:amd64 (1.1.0-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... Setting up libijs-0.35:amd64 (0.35-14) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up unzip (6.0-23+deb10u2) ... Setting up libbrotli1:amd64 (1.0.7-2+deb10u1) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up liblab-gamut1 (2.40.1-6+deb10u1) ... Setting up libproj13:amd64 (5.2.0-1) ... Setting up phylip (1:3.697+dfsg-1) ... Setting up binutils-common:amd64 (2.31.1-16) ... Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up libapr1:amd64 (1.6.5-1+b1) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Setting up proj-bin (5.2.0-1) ... Setting up libqhull7:amd64 (2015.2-4) ... Setting up ncoils (2002-7) ... Setting up krb5-locales (1.17-3+deb10u4) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libc-ares2:amd64 (1.14.0-1+deb10u1) ... Setting up hyphy-common (2.3.14+dfsg-1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up muscle (1:3.8.1551-2) ... Setting up bzip2 (1.0.6-9.2~deb10u1) ... Setting up emboss-data (6.6.0+dfsg-7) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u7) ... Setting up probalign (1.4-8) ... Setting up libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Setting up libgeos-3.7.1:amd64 (3.7.1-1) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up gdal-data (2.4.0+dfsg-1) ... Setting up libjansson4:amd64 (2.12-1) ... Setting up t-coffee (12.00.7fb08c2-4) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up tzdata (2021a-0+deb10u6) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 29 10:53:21 UTC 2022. Universal Time is now: Tue Nov 29 10:53:21 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up ruby-minitest (5.11.3-1) ... Setting up mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up infernal (1.1.2-2) ... Setting up libasan5:amd64 (8.3.0-6) ... Setting up primer3 (2.4.0-2) ... Setting up kalign (1:2.03+20110620-5) ... Setting up autotools-dev (20180224.1) ... Setting up libglib2.0-data (2.58.3-2+deb10u3) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up dialign-tx-data (1.0.2-12) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up mustang (3.2.3-3) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up libjbig2dec0:amd64 (0.16-1+deb10u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up proda (1.0-12) ... Setting up sim4 (0.0.20121010-5) ... Setting up libpathplan4 (2.40.1-6+deb10u1) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsigsegv2:amd64 (2.12-2) ... Setting up xz-utils (5.2.4-1+deb10u1) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (8.3.0-6) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up libgeos-c1v5:amd64 (3.7.1-1) ... Setting up libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Setting up ucf (3.0038+nmu1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up wise-data (2.4.1-21) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up lynx-common (2.8.9rel.1-3+deb10u1) ... Installing new version of config file /etc/lynx/lynx.cfg ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-1) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Setting up libmpx2:amd64 (8.3.0-6) ... Setting up libubsan1:amd64 (8.3.0-6) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libgif7:amd64 (5.1.4-3) ... Setting up liburiparser1:amd64 (0.9.1-1+deb10u1) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up libisl19:amd64 (0.20-2) ... Setting up mount (2.33.1-0.1) ... Setting up libfreexl1:amd64 (1.0.5-3) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up dialign-tx (1.0.2-12) ... Setting up xml-core (0.18+nmu1) ... Setting up libfyba0:amd64 (4.1.1-6) ... Setting up procps (2:3.3.15-2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up libkmlbase1:amd64 (1.3.0-7) ... Setting up fonts-liberation (1:1.07.4-9) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up clustalw (2.1+lgpl-6) ... Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up netbase (5.6) ... Installing new version of config file /etc/services ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up apache2-data (2.4.38-3+deb10u8) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libbinutils:amd64 (2.31.1-16) ... Setting up cpp-8 (8.3.0-6) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up libdivsufsort3:amd64 (2.0.1-4) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up tigr-glimmer (3.02b-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up dialign (2.2.1-10) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up publicsuffix (20220811.1734-0+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up exonerate (2.4.0-4) ... Setting up bedtools (2.27.1+dfsg-4) ... Setting up libcc1-0:amd64 (8.3.0-6) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up sqlite3 (3.27.2-3+deb10u1) ... Setting up liblsan0:amd64 (8.3.0-6) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libitm1:amd64 (8.3.0-6) ... Setting up prank (0.0.170427+dfsg-2) ... Setting up libkmlxsd1:amd64 (1.3.0-7) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libpopt0:amd64 (1.16-12) ... Setting up maq (0.7.1-8) ... Setting up raxml (8.2.12+dfsg-1) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libaprutil1:amd64 (1.6.1-4) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up libkmldom1:amd64 (1.3.0-7) ... Setting up libwayland-client0:amd64 (1.16.0-1) ... Setting up libspatialite7:amd64 (4.3.0a-5+b2) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libpaper1:amd64 (1.1.28) ... Setting up manpages-dev (4.16-2) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libogdi3.2 (3.2.1+ds-4) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libkmlengine1:amd64 (1.3.0-7) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libkmlconvenience1:amd64 (1.3.0-7) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up gawk (1:4.2.1+dfsg-1) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up fontconfig-config (2.13.1-2) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up wise (2.4.1-21) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libtbb2:amd64 (2018~U6-4) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up m4 (1.4.18-2) ... Setting up libdap25:amd64 (3.20.3-1) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u5) ... Setting up binutils (2.31.1-16) ... Setting up libpaper-utils (1.1.28) ... Setting up clustalo (1.2.4-2) ... Setting up libaprutil1-ldap:amd64 (1.6.1-4) ... Setting up tm-align (20170708+dfsg-2) ... Setting up libepsilon1:amd64 (0.9.2+dfsg-4) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-4) ... Setting up libdapserver7v5:amd64 (3.20.3-1) ... Setting up python2 (2.7.16-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libgeotiff2:amd64 (1.4.3-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libkmlregionator1:amd64 (1.3.0-7) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up shared-mime-info (1.10-1) ... Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libodbc1:amd64 (2.3.6-0.1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up xauth (1:1.0.10-1) ... Setting up cpp (4:8.3.0-1) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up hmmer (3.2.1+dfsg-1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up lynx (2.8.9rel.1-3+deb10u1) ... Setting up python (2.7.16-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up apache2-utils (2.4.38-3+deb10u8) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libibverbs1:amd64 (22.1-1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gcc-8 (8.3.0-6) ... Setting up bowtie (1.2.2+dfsg-4) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up libgbm1:amd64 (18.3.6-2+deb10u1) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up libtool (2.4.6-9) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libarpack2:amd64 (3.7.0-2) ... Setting up libpq5:amd64 (11.16-0+deb10u1) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up libnetcdf13:amd64 (1:4.6.2-1) ... Setting up python3 (3.7.3-1) ... Setting up rubygems-integration (1.11+deb10u1) ... Setting up nodejs (10.24.0~dfsg-1~deb10u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up python3-webencodings (0.5.1-1) ... Setting up python3-psutil (5.5.1-1) ... Setting up gcc (4:8.3.0-1) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up python3-six (1.12.0-1) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up python3-isodate (0.6.0-1) ... Setting up python3-pil:amd64 (5.4.1-2+deb10u3) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up perl (5.28.1-6+deb10u1) ... Removing obsolete conffile /etc/perl/sitecustomize.pl ... Setting up libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up libdata-dump-perl (1.23-1) ... Setting up python3-certifi (2018.8.24-1) ... Setting up libref-util-perl (0.204-1) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up libcrypt-rc4-perl (2.02-3) ... Setting up python3-idna (2.6-1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libace-perl (1.92-8+b1) ... Setting up python3-typing-extensions (3.7.2-1) ... Setting up libmath-derivative-perl (1.01-1) ... Setting up python3-html5lib (1.0.1-1) ... Setting up autoconf (2.69-11) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up libcups2:amd64 (2.2.10-6+deb10u6) ... Setting up python3-ruamel.yaml (0.15.34-1+b1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libtype-tiny-xs-perl (0.014-1+b1) ... Setting up g++-8 (8.3.0-6) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u4) ... Setting up python3-rdflib (4.2.2-2) ... Setting up libjson-perl (4.02000-1) ... Setting up libdapclient6v5:amd64 (3.20.3-1) ... Setting up libegl1:amd64 (1.1.0-1) ... Setting up mummer (3.23+dfsg-4) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libfcgi-perl (0.78-2+b3) ... Setting up libsub-uplevel-perl (0.2800-1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libcarp-clan-perl (6.07-1) ... Setting up libstrictures-perl (2.000005-1) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b2) ... Setting up libdevel-symdump-perl (2.18-3) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up python3-shellescape (3.4.1-3) ... Setting up libarmadillo9 (1:9.200.7+dfsg-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libterm-readkey-perl (2.38-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up libguard-perl (1.023-1+b5) ... Setting up libpostscript-perl (0.06-3) ... Setting up python3-mistune (0.8.4-1) ... Setting up libsort-naturally-perl (1.03-2) ... Setting up python3-soupsieve (1.8+dfsg-1) ... Setting up liburi-perl (1.76-1) ... Setting up libstaden-read13:amd64 (1.14.11-6) ... Setting up libdbi-perl:amd64 (1.642-1+deb10u2) ... Setting up libdate-manip-perl (6.76-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libnet-ssleay-perl (1.85-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up libmath-spline-perl (0.02-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.7.3-1) ... Setting up libanyevent-perl (7.140-3) ... Setting up libbio-perl-run-perl (1.7.2-4) ... Setting up libberkeleydb-perl:amd64 (0.55-2) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up python3-lockfile (1:0.12.2-2) ... Setting up libstring-approx-perl (3.28-1+b1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up python3-rdflib-jsonld (0.4.0-4) ... Setting up libtask-weaken-perl (1.06-1) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b7) ... Setting up libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Setting up python3-sparqlwrapper (1.8.2-0.1) ... Setting up libconvert-binary-c-perl (0.78-1+b4) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libclass-inspector-perl (1.32-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtest-deep-perl (1.128-1) ... Setting up libref-util-xs-perl (0.117-1+b1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up mafft (7.407-2) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libalgorithm-diff-perl (1.19.03-2) ... Setting up python3-typed-ast (1.3.1-1) ... Setting up libio-stringy-perl (2.111-3) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libtest-warn-perl (0.36-1) ... Setting up python3-mypy-extensions (0.4.1-1) ... Setting up python3-olefile (0.46-1) ... Setting up libbio-scf-perl (1.03-4) ... Setting up libfile-slurp-tiny-perl (0.004-1) ... Setting up libipc-sharelite-perl (0.17-4+b3) ... Setting up libbio-asn1-entrezgene-perl (1.720-2) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up perl-doc (5.28.1-6+deb10u1) ... Setting up libcommon-sense-perl (3.74-2+b7) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libsvg-perl (2.84-1) ... Setting up libnet-http-perl (6.18-1) ... Setting up libanyevent-http-perl (2.24-1) ... Setting up libbsd-resource-perl (1.2911-1+b3) ... Setting up python3-yaml (3.13-2) ... Setting up libpadwalker-perl (2.3-1+b1) ... Setting up rename (1.10-1) ... Setting up libdbd-pg-perl (3.7.4-3) ... Setting up fsa (1.15.9+dfsg-4) ... Setting up libexception-class-perl (1.44-1) ... Setting up libgraph-perl (1:0.9704-1) ... Setting up libxml-dom-xpath-perl (0.14-3) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up apache2-bin (2.4.38-3+deb10u8) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libmime-tools-perl (5.509-1) ... Setting up python3-networkx (2.2-1) ... Setting up libyaml-perl (1.27-1) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libdevel-caller-perl (2.06-2+b1) ... Setting up python3-bs4 (4.7.1-1) ... Setting up libcupsimage2:amd64 (2.2.10-6+deb10u6) ... Setting up python3-prov (1.5.2-1) ... Setting up samtools (1.9-4) ... Setting up libbit-vector-perl (7.4-1+b5) ... Setting up libfreezethaw-perl (0.5001-2) ... Setting up liberror-perl (0.17027-2) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libreadonly-perl (2.050-1) ... Setting up libunicode-map-perl (0.112-12+b1) ... Setting up libdevel-lexalias-perl (0.05-2+b1) ... Setting up python3-chardet (3.0.4-3) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up python3-requests (2.21.0-1) ... Setting up libdbd-mysql-perl:amd64 (4.050-2) ... Setting up python3-mypy (0.670-2) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up libole-storage-lite-perl (0.19-2+deb10u1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libtree-dagnode-perl (1.31-1) ... Setting up g++ (4:8.3.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libhttp-daemon-perl (6.01-3) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libdbd-sqlite3-perl:amd64 (1.62-3) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up python3-cachecontrol (0.11.7-1) ... Setting up libev-perl (4.25-1) ... Setting up libalgorithm-diff-xs-perl (0.04-5+b1) ... Setting up libcupsfilters1:amd64 (1.21.6-5) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libasync-interrupt-perl (1.24-1+b1) ... Setting up ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Setting up libjson-xs-perl (3.040-1+b1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libstatistics-descriptive-perl (3.0702-1) ... Setting up python3-scipy (1.1.0-7) ... Setting up libdate-calc-xs-perl (6.4-1+b4) ... Setting up libcoarrays-dev:amd64 (2.4.0-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up python3-schema-salad (3.0.20181206233650-2) ... Setting up libtest-differences-perl (0.65-1) ... Setting up hyphy-mpi (2.3.14+dfsg-1) ... Setting up cwltool (1.0.20181217162649+dfsg-10) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up beignet-opencl-icd:amd64 (1.3.2-6+b10) ... Setting up libcaf-openmpi-3:amd64 (2.4.0-2) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up blast2 (1:2.8.1-1+deb10u1) ... Setting up libxml-filter-buffertext-perl (1.01-6) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-1) ... Setting up openmpi-bin (3.1.3-11) ... Installing new version of config file /etc/openmpi/openmpi-mca-params.conf ... update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20180621-2) ... Setting up libxml-sax-writer-perl (0.57-1) ... Setting up libsvg-graph-perl (0.02-3) ... Setting up libtest-most-perl (0.35-1) ... Setting up libcgi-fast-perl (1:2.13-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up libhmsbeagle1v5 (3.1.2+dfsg-6) ... Setting up libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Setting up libarray-compare-perl (3.0.2-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libxml-libxslt-perl (1.96-1+b1) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up bioperl (1.7.2-3) ... Setting up libbio-coordinate-perl (1.7.1-3) ... Setting up bioperl-run (1.7.2-4) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up odbcinst (2.3.6-0.1) ... Setting up libwww-perl (6.36-2) ... Setting up libapache2-mod-perl2 (2.0.10-3) ... Package apache2 is not configured yet. Will defer actions by package libapache2-mod-perl2. Setting up libapache2-reload-perl (0.13-2) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up odbcinst1debian2:amd64 (2.3.6-0.1) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libruby2.5:amd64 (2.5.5-3+deb10u4) ... Setting up libxml-twig-perl (1:3.50-1.1) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-perl (0.08-3) ... Setting up libsoap-lite-perl (1.27-1) ... Setting up ruby2.5 (2.5.5-3+deb10u4) ... Setting up ruby (1:2.5.1) ... Setting up libxmlrpc-lite-perl (0.717-2) ... Processing triggers for sgml-base (1.29) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.7.2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up med-config (3.3) ... Setting up libgs9:amd64 (9.27~dfsg-2+deb10u5) ... Setting up perl-tk (1:804.033-2+b3) ... Setting up apache2 (2.4.38-3+deb10u8) ... Installing new version of config file /etc/apache2/mods-available/deflate.conf ... Installing new version of config file /etc/apache2/mods-available/mime.conf ... Installing new version of config file /etc/logrotate.d/apache2 ... info: Executing deferred 'a2enmod perl' for package libapache2-mod-perl2 invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Processing triggers for libc-bin (2.28-10+deb10u1) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpoppler82:amd64 (0.71.0-5) ... Setting up ghostscript (9.27~dfsg-2+deb10u5) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up emboss-lib (6.6.0+dfsg-7+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libgdal20 (2.4.0+dfsg-1+b1) ... Setting up python3-gdal (2.4.0+dfsg-1+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up emboss (6.6.0+dfsg-7+b1) ... Setting up libgd-perl (2.71-2) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up libgd-svg-perl (0.33-2) ... Setting up libbio-graphics-perl (2.40-3) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up gbrowse (2.56+dfsg-4) ... Installing new version of config file /etc/gbrowse/ConfigData.pm ... apache2_invoke gbrowse: already enabled invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for menu (2.1.47+b1) ... 3m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-yf', 'dist-upgrade'] 3m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m28.7s DUMP: f6fc0f2636004ef589309651dfd778f4 - 3m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 3m28.9s DUMP: Package: gbrowse Version: 2.56+dfsg-4 Installed-Size: 7016 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, apache2 (>= 2.4) | httpd-cgi, bioperl, libbio-graphics-perl (>= 2.31), libbio-coordinate-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description-en: GMOD Generic Genome Browser Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features: * Simultaneous bird's eye and detailed views of the genome; * Scroll, zoom, center; * Attach arbitrary URLs to any annotation; * Order and appearance of tracks are customizable by administrator and end-user; * Search by annotation ID, name, or comment; * Supports third party annotation using GFF formats; * Settings persist across sessions; * DNA and GFF dumps; * Connectivity to different databases, including BioSQL and Chado; * Multi-language support; * Third-party feature loading; * Customizable plug-in architecture (e.g. run BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features). Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Homepage: http://www.gbrowse.org/ Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-4_all.deb Size: 2372120 MD5sum: 6cea635b81f1b13db93ff45220b41d31 SHA256: f9344103e9d4cb2d0a44e5df873443f371c664eac179182d4da497e9989bb1e8 3m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 3m28.9s INFO: apt-cache knows about the following packages: gbrowse 3m28.9s INFO: Running scripts pre_install 3m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_database-server'] 3m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_database-server'] 3m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_exceptions'] 3m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_exceptions'] 3m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_extras'] 3m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_extras'] 3m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture'] 3m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture'] 3m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy'] 3m29.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy'] 3m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy', 'gbrowse'] 3m29.1s DUMP: gbrowse: Installed: 2.56+dfsg-4 Candidate: 2.56+dfsg-4 Version table: *** 2.56+dfsg-4 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 3m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy', 'gbrowse'] 3m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-y', 'install', 'gbrowse'] 3m29.4s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse is already the newest version (2.56+dfsg-4). The following packages were automatically installed and are no longer required: libann0 libgdbm3 libgfortran3 libhmsbeagle1v5 libhpdf-2.2.1 libhts1 libicu57 libmpfr4 libncurses5 libopenmpi2 libperl5.24 libprocps6 libruby2.3 libssl1.0.2 libstaden-read11 libunistring0 rename ruby2.3 sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-y', 'install', 'gbrowse'] 3m29.4s INFO: Running scripts post_install 3m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_install_exceptions'] 3m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_install_exceptions'] 3m29.5s INFO: Running scripts post_distupgrade 3m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_exceptions'] 3m29.5s DUMP: Normalized /etc/ca-certificates.conf removed empty directory '/etc/dbus-1/system.d' 3m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_exceptions'] 3m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_zz_backports'] 3m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_distupgrade_zz_backports'] 3m29.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 3m31.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 3m31.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 3m33.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 3m33.1s INFO: Running scripts pre_install 3m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_database-server'] 3m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_database-server'] 3m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_exceptions'] 3m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_exceptions'] 3m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_extras'] 3m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_extras'] 3m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture'] 3m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture'] 3m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy'] 3m33.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy'] 3m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy', 'gbrowse'] 3m33.2s DUMP: gbrowse: Installed: 2.56+dfsg-4 Candidate: 2.56+dfsg-4 Version table: *** 2.56+dfsg-4 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 3m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-cache', 'policy', 'gbrowse'] 3m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-y', 'install', 'gbrowse=2.56+dfsg-4'] 3m33.7s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse is already the newest version (2.56+dfsg-4). The following packages were automatically installed and are no longer required: libann0 libgdbm3 libgfortran3 libhmsbeagle1v5 libhpdf-2.2.1 libhts1 libicu57 libmpfr4 libncurses5 libopenmpi2 libperl5.24 libprocps6 libruby2.3 libssl1.0.2 libstaden-read11 libunistring0 rename ruby2.3 sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', '-y', 'install', 'gbrowse=2.56+dfsg-4'] 3m33.7s INFO: Running scripts post_install 3m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_install_exceptions'] 3m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_install_exceptions'] 3m33.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 3m35.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 3m37.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpc_els25h', '-ac', '--ignore-obsolete'] 3m44.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpc_els25h', '-ac', '--ignore-obsolete'] 3m44.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m44.8s DUMP: 0.15.6 3m44.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m44.8s INFO: Running adequate version 0.15.6 now. 3m44.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'gbrowse'] 3m45.0s DUMP: gbrowse: broken-symlink /usr/share/gbrowse/htdocs/i -> /var/cache/gbrowse/images 3m45.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'gbrowse'] 3m45.0s ERROR: WARN: Inadequate results from running adequate! gbrowse: broken-symlink /usr/share/gbrowse/htdocs/i -> /var/cache/gbrowse/images 3m45.0s ERROR: WARN: Running adequate resulted in less interesting tags found: broken-symlink 3m45.0s INFO: Running scripts pre_remove 3m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m45.1s DUMP: gbrowse: MISSING OBJECT /var/cache/gbrowse/sessions 3m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_exceptions'] 4m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/pre_remove_exceptions'] 4m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m5.4s DUMP: install ok installed adduser adduser 3.118 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-1 install ok installed apache2 apache2 2.4.38-3+deb10u8 install ok installed apache2-bin apache2-bin 2.4.38-3+deb10u8 install ok installed apache2-data apache2-data 2.4.38-3+deb10u8 install ok installed apache2-utils apache2-utils 2.4.38-3+deb10u8 install ok installed apt apt 1.8.2.3 install ok installed autoconf autoconf 2.69-11 install ok installed automake automake 1:1.16.1-4 install ok installed autotools-dev autotools-dev 20180224.1 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bedtools bedtools 2.27.1+dfsg-4 install ok installed beignet-opencl-icd:amd64 beignet-opencl-icd 1.3.2-6+b10 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed bioperl bioperl 1.7.2-3 install ok installed bioperl-run bioperl-run 1.7.2-4 install ok installed blast2 blast2 1:2.8.1-1+deb10u1 install ok installed blends-common blends-common 0.7.2 install ok installed bowtie bowtie 1.2.2+dfsg-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bwa bwa 0.7.17-3 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed clustalo clustalo 1.2.4-2 install ok installed clustalw clustalw 2.1+lgpl-6 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed cwltool cwltool 1.0.20181217162649+dfsg-10 install ok installed dash dash 0.5.10.2-5 install ok installed dbus dbus 1.12.20-0+deb10u1 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed dialign dialign 2.2.1-10 install ok installed dialign-tx dialign-tx 1.0.2-12 install ok installed dialign-tx-data dialign-tx-data 1.0.2-12 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed emboss emboss 6.6.0+dfsg-7+b1 install ok installed emboss-data emboss-data 6.6.0+dfsg-7 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-7+b1 install ok installed exonerate exonerate 2.4.0-4 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed fonts-lato fonts-lato 2.0-2 install ok installed fonts-liberation fonts-liberation 1:1.07.4-9 install ok installed fonts-noto-mono fonts-noto-mono 20181227-1 install ok installed fsa fsa 1.15.9+dfsg-4 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gawk gawk 1:4.2.1+dfsg-1 install ok installed gbrowse gbrowse 2.56+dfsg-4 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gdal-data gdal-data 2.4.0+dfsg-1 install ok installed gfortran gfortran 4:8.3.0-1 install ok installed gfortran-8 gfortran-8 8.3.0-6 install ok installed ghostscript ghostscript 9.27~dfsg-2+deb10u5 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed graphviz graphviz 2.40.1-6+deb10u1 install ok installed grep grep 3.3-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.4 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hmmer hmmer 3.2.1+dfsg-1 install ok installed hostname hostname 3.21 install ok installed hyphy-common hyphy-common 2.3.14+dfsg-1 install ok installed hyphy-mpi hyphy-mpi 2.3.14+dfsg-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 22.1-1 install ok installed infernal infernal 1.1.2-2 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-5 install ok installed krb5-locales krb5-locales 1.17-3+deb10u4 install ok installed libace-perl libace-perl 1.92-8+b1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-2 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-5+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-7 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-2 install ok installed libanyevent-http-perl libanyevent-http-perl 2.24-1 install ok installed libanyevent-perl libanyevent-perl 7.140-3 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.10-3 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-2 install ok installed libapparmor1:amd64 libapparmor1 2.13.2-10 install ok installed libapr1:amd64 libapr1 1.6.5-1+b1 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-4 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-4 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libarmadillo9 libarmadillo9 1:9.200.7+dfsg-1 install ok installed libarpack2:amd64 libarpack2 3.7.0-2 install ok installed libarray-compare-perl libarray-compare-perl 3.0.2-1 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libasync-interrupt-perl libasync-interrupt-perl 1.24-1+b1 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.7-4+deb10u1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.7-4+deb10u1 install ok installed libavahi-common3:amd64 libavahi-common3 0.7-4+deb10u1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.22-1+b1 install ok installed libberkeleydb-perl:amd64 libberkeleydb-perl 0.55-2 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.720-2 install ok installed libbio-coordinate-perl libbio-coordinate-perl 1.7.1-3 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-3 install ok installed libbio-perl-perl libbio-perl-perl 1.7.2-3 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.2-4 install ok installed libbio-scf-perl libbio-scf-perl 1.03-4 install ok installed libbit-vector-perl libbit-vector-perl 7.4-1+b5 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.7-2+deb10u1 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-1+b3 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-ares2:amd64 libc-ares2 1.14.0-1+deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcaf-openmpi-3:amd64 libcaf-openmpi-3 2.4.0-2 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.07-1 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcdt5 libcdt5 2.40.1-6+deb10u1 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.13-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.40-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-3 install ok installed libcgraph6 libcgraph6 2.40.1-6+deb10u1 install ok installed libcharls2:amd64 libcharls2 2.0.0+dfsg-1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.32-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.12-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-3+b2 install ok installed libclone-perl libclone-perl 0.41-1+b1 install ok installed libcoarrays-dev:amd64 libcoarrays-dev 2.4.0-2 install ok installed libcoarrays-openmpi-dev:amd64 libcoarrays-openmpi-dev 2.4.0-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libcommon-sense-perl libcommon-sense-perl 3.74-2+b7 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.78-1+b4 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-3 install ok installed libcups2:amd64 libcups2 2.2.10-6+deb10u6 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.21.6-5 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.10-6+deb10u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdap25:amd64 libdap25 3.20.3-1 install ok installed libdapclient6v5:amd64 libdapclient6v5 3.20.3-1 install ok installed libdapserver7v5:amd64 libdapserver7v5 3.20.3-1 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b4 install ok installed libdate-manip-perl libdate-manip-perl 6.76-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.7.4-3 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.62-3 install ok installed libdbi-perl:amd64 libdbi-perl 1.642-1+deb10u2 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.20-0+deb10u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdeflate0:amd64 libdeflate0 1.2-1 install ok installed libdevel-callchecker-perl libdevel-callchecker-perl 0.008-1 install ok installed libdevel-caller-perl libdevel-caller-perl 2.06-2+b1 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-lexalias-perl libdevel-lexalias-perl 0.05-2+b1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0300-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-3 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-4 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.97-1 install ok installed libdrm-common libdrm-common 2.4.97-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.97-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.97-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.97-1 install ok installed libdrm2:amd64 libdrm2 2.4.97-1 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-1 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libegl-mesa0:amd64 libegl-mesa0 18.3.6-2+deb10u1 install ok installed libegl1:amd64 libegl1 1.1.0-1 install ok installed libelf1:amd64 libelf1 0.176-1.1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libepsilon1:amd64 libepsilon1 0.9.2+dfsg-4 install ok installed liberror-perl liberror-perl 0.17027-2 install ok installed libev-perl libev-perl 4.25-1 install ok installed libevent-2.1-6:amd64 libevent-2.1-6 2.1.8-stable-4 install ok installed libevent-core-2.1-6:amd64 libevent-core-2.1-6 2.1.8-stable-4 install ok installed libevent-pthreads-2.1-6:amd64 libevent-pthreads-2.1-6 2.1.8-stable-4 install ok installed libexception-class-perl libexception-class-perl 1.44-1 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.002001-1 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfabric1 libfabric1 1.6.2-3 install ok installed libfcgi-perl libfcgi-perl 0.78-2+b3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.004-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfreexl1:amd64 libfreexl1 1.0.5-3 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libfyba0:amd64 libfyba0 4.1.1-6 install ok installed libgbm1:amd64 libgbm1 18.3.6-2+deb10u1 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgd-perl libgd-perl 2.71-2 install ok installed libgd-svg-perl libgd-svg-perl 0.33-2 install ok installed libgd3:amd64 libgd3 2.2.5-5.2 install ok installed libgdal20 libgdal20 2.4.0+dfsg-1+b1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgeos-3.7.1:amd64 libgeos-3.7.1 3.7.1-1 install ok installed libgeos-c1v5:amd64 libgeos-c1v5 3.7.1-1 install ok installed libgeotiff2:amd64 libgeotiff2 1.4.3-1 install ok installed libgfortran-8-dev:amd64 libgfortran-8-dev 8.3.0-6 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgif7:amd64 libgif7 5.1.4-3 install ok installed libgl1:amd64 libgl1 1.1.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 18.3.6-2+deb10u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 18.3.6-2+deb10u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libglib2.0-data libglib2.0-data 2.58.3-2+deb10u3 install ok installed libglvnd0:amd64 libglvnd0 1.1.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 18.3.6-2+deb10u1 install ok installed libglx0:amd64 libglx0 1.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libgraph-perl libgraph-perl 1:0.9704-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgs9:amd64 libgs9 9.27~dfsg-2+deb10u5 install ok installed libgs9-common libgs9-common 9.27~dfsg-2+deb10u5 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4 install ok installed libguard-perl libguard-perl 1.023-1+b5 install ok installed libgvc6 libgvc6 2.40.1-6+deb10u1 install ok installed libgvpr2 libgvpr2 2.40.1-6+deb10u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.13-4 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhmsbeagle1v5 libhmsbeagle1v5 3.1.2+dfsg-6 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1.1+b1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libhts2:amd64 libhts2 1.9-12~deb10u1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.04-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-3 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhwloc-dev:amd64 libhwloc-dev 1.11.12-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs-dev:amd64 libibverbs-dev 22.1-1 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-14 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b5 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.060-3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20180523.0-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4+b3 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjansson4:amd64 libjansson4 2.12-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.16-1+deb10u1 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-prototype libjs-prototype 1.7.1-3 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjson-c3:amd64 libjson-c3 0.12.1+ds-2+deb10u1 install ok installed libjson-perl libjson-perl 4.02000-1 install ok installed libjson-xs-perl libjson-xs-perl 3.040-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkmlbase1:amd64 libkmlbase1 1.3.0-7 install ok installed libkmlconvenience1:amd64 libkmlconvenience1 1.3.0-7 install ok installed libkmldom1:amd64 libkmldom1 1.3.0-7 install ok installed libkmlengine1:amd64 libkmlengine1 1.3.0-7 install ok installed libkmlregionator1:amd64 libkmlregionator1 1.3.0-7 install ok installed libkmlxsd1:amd64 libkmlxsd1 1.3.0-7 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblab-gamut1 liblab-gamut1 2.40.1-6+deb10u1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b4 install ok installed libllvm7:amd64 libllvm7 1:7.0.1-8+deb10u2 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-9 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmariadb3:amd64 libmariadb3 1:10.3.34-0+deb10u1 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmime-tools-perl libmime-tools-perl 5.509-1 install ok installed libminizip1:amd64 libminizip1 1.1-8+b1 install ok installed libmldbm-perl libmldbm-perl 2.05-2 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-1 install ok installed libmoo-perl libmoo-perl 2.003004-2 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncurses5:amd64 libncurses5 6.1+20181013-2+deb10u2 install ok installed libncurses6:amd64 libncurses6 6.1+20181013-2+deb10u2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnet-http-perl libnet-http-perl 6.18-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.85-2+deb10u1 install ok installed libnetcdf13:amd64 libnetcdf13 1:4.6.2-1 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1 install ok installed libnl-3-dev:amd64 libnl-3-dev 3.4.0-1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1 install ok installed libnl-route-3-dev:amd64 libnl-route-3-dev 3.4.0-1 install ok installed libnode64:amd64 libnode64 10.24.0~dfsg-1~deb10u1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss3:amd64 libnss3 2:3.42.1-1+deb10u5 install ok installed libnuma-dev:amd64 libnuma-dev 2.0.12-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libodbc1:amd64 libodbc1 2.3.6-0.1 install ok installed libogdi3.2 libogdi3.2 3.2.1+ds-4 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-2+deb10u1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.3.0-2+deb10u2 install ok installed libopenmpi-dev:amd64 libopenmpi-dev 3.1.3-11 install ok installed libopenmpi2:amd64 libopenmpi2 2.0.2-2 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-11 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b7 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b7 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpadwalker-perl libpadwalker-perl 2.3-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libparams-classify-perl libparams-classify-perl 0.015-1+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-2 install ok installed libpathplan4 libpathplan4 2.40.1-6+deb10u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpmix2:amd64 libpmix2 3.1.2-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpoppler82:amd64 libpoppler82 0.71.0-5 install ok installed libpopt0:amd64 libpopt0 1.16-12 install ok installed libpostscript-perl libpostscript-perl 0.06-3 install ok installed libpq5:amd64 libpq5 11.16-0+deb10u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libprocps7:amd64 libprocps7 2:3.3.15-2 install ok installed libproj13:amd64 libproj13 5.2.0-1 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libqhull7:amd64 libqhull7 2015.2-4 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libreadonly-perl libreadonly-perl 2.050-1 install ok installed libref-util-perl libref-util-perl 0.204-1 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-1+b1 install ok installed librole-tiny-perl librole-tiny-perl 2.000006-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u8 install ok installed libruby2.5:amd64 libruby2.5 2.5.5-3+deb10u4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsensors-config libsensors-config 1:3.5.0-3 install ok installed libsensors5:amd64 libsensors5 1:3.5.0-3 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-2 install ok installed libspatialite7:amd64 libspatialite7 4.3.0a-5+b2 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstaden-read11:amd64 libstaden-read11 1.14.8-2 install ok installed libstaden-read13:amd64 libstaden-read13 1.14.11-6 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0702-1 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libstrictures-perl libstrictures-perl 2.000005-1 install ok installed libstring-approx-perl libstring-approx-perl 3.28-1+b1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1+b3 install ok installed libsub-quote-perl libsub-quote-perl 2.005001-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.1+dfsg1-4 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-3 install ok installed libsvg-perl libsvg-perl 2.84-1 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtbb2:amd64 libtbb2 2018~U6-4 install ok installed libterm-readkey-perl libterm-readkey-perl 2.38-1 install ok installed libtest-deep-perl libtest-deep-perl 1.128-1 install ok installed libtest-differences-perl libtest-differences-perl 0.65-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.35-1 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b7 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb10u1 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtool libtool 2.4.6-9 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.31-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libtype-tiny-perl libtype-tiny-perl 1.004004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.014-1+b1 install ok installed libtypes-serialiser-perl libtypes-serialiser-perl 1.0-1 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunicode-map-perl libunicode-map-perl 0.112-12+b1 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.1-1+deb10u1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libuv1:amd64 libuv1 1.24.1-1+deb10u1 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-2 install ok installed libwayland-client0:amd64 libwayland-client0 1.16.0-1 install ok installed libwayland-server0:amd64 libwayland-server0 1.16.0-1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u1 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u1 install ok installed libwww-perl libwww-perl 6.36-2 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.13.1-2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.13.1-2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.13.1-2 install ok installed libxcb-present0:amd64 libxcb-present0 1.13.1-2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.13.1-2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-3+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.40.1-6+deb10u1 install ok installed libxerces-c3.2:amd64 libxerces-c3.2 3.2.2+debian-1+deb10u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml-dom-perl libxml-dom-perl 1.44-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-3 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-6 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.96-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-4 install ok installed libxml-perl libxml-perl 0.08-3 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-1 install ok installed libxml-sax-perl libxml-sax-perl 1.00+dfsg-1 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1.1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.44-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-2 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.32-2.2~deb10u1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.76+repack-1 install ok installed libyaml-perl libyaml-perl 1.27-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed lynx lynx 2.8.9rel.1-3+deb10u1 install ok installed lynx-common lynx-common 2.8.9rel.1-3+deb10u1 install ok installed m4 m4 1.4.18-2 install ok installed mafft mafft 7.407-2 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed maq maq 0.7.1-8 install ok installed mariadb-common mariadb-common 1:10.3.34-0+deb10u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed med-config med-config 3.3 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed mummer mummer 3.23+dfsg-4 install ok installed muscle muscle 1:3.8.1551-2 install ok installed mustang mustang 3.2.3-3 install ok installed mysql-common mysql-common 5.8+1.0.5 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncoils ncoils 2002-7 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed netbase netbase 5.6 install ok installed nodejs nodejs 10.24.0~dfsg-1~deb10u1 install ok installed nodejs-doc nodejs-doc 10.24.0~dfsg-1~deb10u1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed odbcinst odbcinst 2.3.6-0.1 install ok installed odbcinst1debian2:amd64 odbcinst1debian2 2.3.6-0.1 install ok installed openmpi-bin openmpi-bin 3.1.3-11 install ok installed openmpi-common openmpi-common 3.1.3-11 install ok installed openssh-client openssh-client 1:7.9p1-10+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-doc perl-doc 5.28.1-6+deb10u1 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed perl-tk perl-tk 1:804.033-2+b3 install ok installed phylip phylip 1:3.697+dfsg-1 install ok installed phyml phyml 3:3.3.20180621-2 install ok installed poa poa 2.0+20060928-7 install ok installed poppler-data poppler-data 0.4.9-2 install ok installed prank prank 0.0.170427+dfsg-2 install ok installed primer3 primer3 2.4.0-2 install ok installed probalign probalign 1.4-8 install ok installed probcons probcons 1.12-12 install ok installed procps procps 2:3.3.15-2 install ok installed proda proda 1.0-12 install ok installed proj-bin proj-bin 5.2.0-1 install ok installed proj-data proj-data 5.2.0-1 install ok installed psmisc psmisc 23.2-1+deb10u1 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb10u1 install ok installed python python 2.7.16-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-bs4 python3-bs4 4.7.1-1 install ok installed python3-cachecontrol python3-cachecontrol 0.11.7-1 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-gdal python3-gdal 2.4.0+dfsg-1+b1 install ok installed python3-html5lib python3-html5lib 1.0.1-1 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-isodate python3-isodate 0.6.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2 install ok installed python3-lxml:amd64 python3-lxml 4.3.2-1+deb10u4 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-mistune python3-mistune 0.8.4-1 install ok installed python3-mypy python3-mypy 0.670-2 install ok installed python3-mypy-extensions python3-mypy-extensions 0.4.1-1 install ok installed python3-networkx python3-networkx 2.2-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-olefile python3-olefile 0.46-1 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-prov python3-prov 1.5.2-1 install ok installed python3-psutil python3-psutil 5.5.1-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-rdflib python3-rdflib 4.2.2-2 install ok installed python3-rdflib-jsonld python3-rdflib-jsonld 0.4.0-4 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.15.34-1+b1 install ok installed python3-schema-salad python3-schema-salad 3.0.20181206233650-2 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-shellescape python3-shellescape 3.4.1-3 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-soupsieve python3-soupsieve 1.8+dfsg-1 install ok installed python3-sparqlwrapper python3-sparqlwrapper 1.8.2-0.1 install ok installed python3-typed-ast python3-typed-ast 1.3.1-1 install ok installed python3-typing-extensions python3-typing-extensions 3.7.2-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed rake rake 12.3.1-3+deb10u1 install ok installed raxml raxml 8.2.12+dfsg-1 install ok installed readline-common readline-common 7.0-5 install ok installed rename rename 1.10-1 install ok installed ruby ruby 1:2.5.1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.2.1-1 install ok installed ruby-minitest ruby-minitest 5.11.3-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.1-1 install ok installed ruby-test-unit ruby-test-unit 3.2.8-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u8 install ok installed ruby2.5 ruby2.5 2.5.5-3+deb10u4 install ok installed rubygems-integration rubygems-integration 1.11+deb10u1 install ok installed samtools samtools 1.9-4 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.10-1 install ok installed sim4 sim4 0.0.20121010-5 install ok installed sqlite3 sqlite3 3.27.2-3+deb10u1 install ok installed ssl-cert ssl-cert 1.0.39 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed t-coffee t-coffee 12.00.7fb08c2-4 install ok installed tar tar 1.30+dfsg-6 install ok installed tigr-glimmer tigr-glimmer 3.02b-2 install ok installed tm-align tm-align 20170708+dfsg-2 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed wise wise 2.4.1-21 install ok installed wise-data wise-data 2.4.1-21 install ok installed x11-common x11-common 1:7.7+19 install ok installed xauth xauth 1:1.0.10-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xml-core xml-core 0.18+nmu1 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 4m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'remove', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++-', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libev-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-c3:amd64', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvm-ec2-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'gbrowse'] 4m19.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: amap-align apache2 apache2-bin apache2-data apache2-utils autoconf automake autotools-dev bedtools beignet-opencl-icd binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 clustalo clustalw cpp cpp-8 cwltool dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-noto-mono fsa g++ g++-8 gawk gbrowse gcc gcc-8 gdal-data gfortran gfortran-8 ghostscript graphviz gsfonts hmmer hyphy-common hyphy-mpi ibverbs-providers infernal javascript-common kalign krb5-locales libace-perl libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarmadillo9 libarpack2 libarray-compare-perl libasan5 libasync-interrupt-perl libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libberkeleydb-perl libbinutils libbio-asn1-entrezgene-perl libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbit-vector-perl libblas3 libbrotli1 libbsd-resource-perl libbsd0 libc-ares2 libc-dev-bin libc6-dev libcache-cache-perl libcaf-openmpi-3 libcairo2 libcapture-tiny-perl libcarp-clan-perl libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libcharls2 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcoarrays-dev libcoarrays-openmpi-dev libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-caller-perl libdevel-globaldestruction-perl libdevel-lexalias-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libegl-mesa0 libegl1 libelf1 libencode-locale-perl libepsilon1 liberror-perl libev-perl libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreexl1 libfreezethaw-perl libfribidi0 libfyba0 libgbm1 libgcc-8-dev libgd-perl libgd-svg-perl libgd3 libgdal20 libgdbm-compat4 libgdbm3 libgdbm6 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran-8-dev libgfortran3 libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-103 libhmsbeagle1v5 libhpdf-2.2.1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts1 libhts2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu57 libicu63 libidn11 libijs-0.35 libimagequant0 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libisl19 libitm1 libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-prototype libjs-scriptaculous libjson-c3 libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl libllvm7 liblmdb0 liblsan0 libltdl-dev libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmime-tools-perl libminizip1 libmldbm-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpdec2 libmpfr4 libmpfr6 libmpx2 libncurses5 libncurses6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnode64 libnspr4 libnss3 libnuma-dev libnuma1 libodbc1 libogdi3.2 libole-storage-lite-perl libopenjp2-7 libopenmpi-dev libopenmpi2 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpadwalker-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libperl5.24 libperl5.28 libpixman-1-0 libpmix2 libpng16-16 libpoppler82 libpopt0 libpostscript-perl libpq5 libprocps6 libprocps7 libproj13 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libquadmath0 librdmacm1 libreadline7 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.3 libruby2.5 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspatialite7 libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.0.2 libstaden-read11 libstaden-read13 libstatistics-descriptive-perl libstdc++-8-dev libstrictures-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsuperlu5 libsvg-graph-perl libsvg-perl libsz2 libtask-weaken-perl libtbb2 libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libubsan1 libunicode-map-perl libunistring0 liburi-perl liburiparser1 libuv1 libvm-ec2-perl libwayland-client0 libwayland-server0 libwebp6 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxerces-c3.2 libxext6 libxfixes3 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxpm4 libxrender1 libxshmfence1 libxslt1.1 libxt6 libxxf86vm1 libyaml-0-2 libyaml-libyaml-perl libyaml-perl linux-libc-dev lsb-base lynx lynx-common m4 mafft manpages manpages-dev maq mariadb-common med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase nodejs nodejs-doc ocl-icd-libopencl1 odbcinst odbcinst1debian2 openmpi-bin openmpi-common openssh-client perl perl-doc perl-modules-5.24 perl-modules-5.28 perl-openssl-defaults perl-tk phylip phyml poa poppler-data prank primer3 probalign probcons procps proda proj-bin proj-data psmisc publicsuffix python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal rake raxml readline-common rename ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.3 ruby2.5 rubygems-integration samtools sgml-base shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align tzdata ucf unzip wise wise-data x11-common xauth xdg-user-dirs xml-core xz-utils zip 0 upgraded, 0 newly installed, 643 to remove and 0 not upgraded. After this operation, 1971 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49337 files and directories currently installed.) Removing amap-align (2.2+git20080214.600fc29+dfsg-1) ... Removing gbrowse (2.56+dfsg-4) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.38-3+deb10u8) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libapache2-reload-perl (0.13-2) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.10-3) ... Removing apache2-bin (2.4.38-3+deb10u8) ... dpkg: warning: while removing apache2-bin, directory '/var/lib/apache2' not empty so not removed Removing apache2-data (2.4.38-3+deb10u8) ... Removing apache2-utils (2.4.38-3+deb10u8) ... Removing libopenmpi-dev:amd64 (3.1.3-11) ... Removing libhwloc-dev:amd64 (1.11.12-3) ... Removing libltdl-dev:amd64 (2.4.6-9) ... Removing automake (1:1.16.1-4) ... Removing autoconf (2.69-11) ... Removing libtool (2.4.6-9) ... Removing autotools-dev (20180224.1) ... Removing bedtools (2.27.1+dfsg-4) ... Removing libhmsbeagle1v5 (3.1.2+dfsg-6) ... Removing beignet-opencl-icd:amd64 (1.3.2-6+b10) ... Removing g++ (4:8.3.0-1) ... Removing libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Removing libcoarrays-dev:amd64 (2.4.0-2) ... Removing gfortran (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing libbio-graphics-perl (2.40-3) ... Removing libbio-coordinate-perl (1.7.1-3) ... Removing bioperl-run (1.7.2-4) ... Removing blast2 (1:2.8.1-1+deb10u1) ... Removing med-config (3.3) ... Removing blends-common (0.7.2) ... Removing bowtie (1.2.2+dfsg-4) ... Removing bwa (0.7.17-3) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing clustalo (1.2.4-2) ... Removing clustalw (2.1+lgpl-6) ... Removing cpp (4:8.3.0-1) ... Removing cwltool (1.0.20181217162649+dfsg-10) ... Removing dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-10) ... Removing dialign-tx (1.0.2-12) ... Removing dialign-tx-data (1.0.2-12) ... Removing emboss (6.6.0+dfsg-7+b1) ... Removing emboss-data (6.6.0+dfsg-7) ... Removing emboss-lib (6.6.0+dfsg-7+b1) ... Removing fsa (1.15.9+dfsg-4) ... Removing exonerate (2.4.0-4) ... Removing file (1:5.35-4+deb10u2) ... Removing libgraphviz-perl (2.22-1) ... Removing graphviz (2.40.1-6+deb10u1) ... Removing libgvc6 (2.40.1-6+deb10u1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing perl-tk (1:804.033-2+b3) ... Removing libxft2:amd64 (2.3.2-2) ... Removing python3-gdal (2.4.0+dfsg-1+b1) ... Removing libgdal20 (2.4.0+dfsg-1+b1) ... Removing libpoppler82:amd64 (0.71.0-5) ... Removing fonts-dejavu-core (2.37-1) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing python3-schema-salad (3.0.20181206233650-2) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing fonts-lato (2.0-2) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing fonts-noto-mono (20181227-1) ... Removing g++-8 (8.3.0-6) ... Removing mummer (3.23+dfsg-4) ... Removing gawk (1:4.2.1+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing gdal-data (2.4.0+dfsg-1) ... Removing gfortran-8 (8.3.0-6) ... Removing ghostscript (9.27~dfsg-2+deb10u5) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Removing hmmer (3.2.1+dfsg-1) ... Removing hyphy-mpi (2.3.14+dfsg-1) ... Removing hyphy-common (2.3.14+dfsg-1) ... Removing libibverbs-dev:amd64 (22.1-1) ... Removing ibverbs-providers:amd64 (22.1-1) ... Removing infernal (1.1.2-2) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-5) ... Removing krb5-locales (1.17-3+deb10u4) ... Removing libace-perl (1.92-8+b1) ... Removing libnetcdf13:amd64 (1:4.6.2-1) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libalgorithm-diff-xs-perl (0.04-5+b1) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libann0 (1.1.2+doc-7) ... Removing libvm-ec2-perl (1.28-2) ... Removing libanyevent-cachedns-perl (0.08-2) ... Removing libanyevent-http-perl (2.24-1) ... Removing libanyevent-perl (7.140-3) ... Removing libapparmor1:amd64 (2.13.2-10) ... Removing libaprutil1-ldap:amd64 (1.6.1-4) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.1-4) ... Removing libaprutil1:amd64 (1.6.1-4) ... Removing libapr1:amd64 (1.6.5-1+b1) ... Removing libargtable2-0 (13-1) ... Removing libarmadillo9 (1:9.200.7+dfsg-1) ... Removing libarpack2:amd64 (3.7.0-2) ... Removing libarray-compare-perl (3.0.2-1) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing libgfortran-8-dev:amd64 (8.3.0-6) ... Removing libasync-interrupt-perl (1.24-1+b1) ... Removing libtbb2:amd64 (2018~U6-4) ... Removing nodejs (10.24.0~dfsg-1~deb10u1) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9:amd64 (9.27~dfsg-2+deb10u5) ... Removing libcupsfilters1:amd64 (1.21.6-5) ... Removing libmoo-perl (2.003004-2) ... Removing libimport-into-perl (1.002005-1) ... Removing libmodule-runtime-perl (0.016-1) ... Removing libparams-classify-perl (0.015-1+b1) ... Removing libdevel-callchecker-perl (0.008-1) ... Removing libb-hooks-op-check-perl (0.22-1+b1) ... Removing libberkeleydb-perl:amd64 (0.55-2) ... Removing libbio-asn1-entrezgene-perl (1.720-2) ... Removing libbio-perl-run-perl (1.7.2-4) ... Removing libbio-scf-perl (1.03-4) ... Removing libdate-calc-xs-perl (6.4-1+b4) ... Removing libdate-calc-perl (6.4-1) ... Removing libbit-vector-perl (7.4-1+b5) ... Removing libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Removing python3-scipy (1.1.0-7) ... Removing python3-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Removing libbrotli1:amd64 (1.0.7-2+deb10u1) ... Removing libbsd-resource-perl (1.2911-1+b3) ... Removing lynx (2.8.9rel.1-3+deb10u1) ... Removing libgl1:amd64 (1.1.0-1) ... Removing libglx0:amd64 (1.1.0-1) ... Removing libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing libc-ares2:amd64 (1.14.0-1+deb10u1) ... Removing libnuma-dev:amd64 (2.0.12-1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libcache-cache-perl (1.08-2) ... Removing libcaf-openmpi-3:amd64 (2.4.0-2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libcarp-clan-perl (6.07-1) ... Removing libgvpr2 (2.40.1-6+deb10u1) ... Removing libcgraph6 (2.40.1-6+deb10u1) ... Removing libcdt5 (2.40.1-6+deb10u1) ... Removing libcgi-fast-perl (1:2.13-1) ... Removing libcgi-session-perl (4.48-3) ... Removing libcgi-pm-perl (4.40-1) ... Removing libcharls2:amd64 (2.0.0+dfsg-1) ... Removing libxmlrpc-lite-perl (0.717-2) ... Removing libsoap-lite-perl (1.27-1) ... Removing libclass-inspector-perl (1.32-1) ... Removing librole-tiny-perl (2.000006-1) ... Removing libclass-method-modifiers-perl (2.12-1) ... Removing libclass-xsaccessor-perl (1.19-3+b2) ... Removing libclone-perl (0.41-1+b1) ... Removing libjson-xs-perl (3.040-1+b1) ... Removing libtypes-serialiser-perl (1.0-1) ... Removing libev-perl (4.25-1) ... Removing libcommon-sense-perl (3.74-2+b7) ... Removing libconvert-binary-c-perl (0.78-1+b4) ... Removing libmime-tools-perl (5.509-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-3) ... Removing libcupsimage2:amd64 (2.2.10-6+deb10u6) ... Removing libstaden-read11:amd64 (1.14.8-2) ... Removing libhts1:amd64 (1.3.2-2) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing libdapserver7v5:amd64 (3.20.3-1) ... Removing libdapclient6v5:amd64 (3.20.3-1) ... Removing libdap25:amd64 (3.20.3-1) ... Removing libdata-dump-perl (1.23-1) ... Removing libdate-manip-perl (6.76-1) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libdbd-mysql-perl:amd64 (4.050-2) ... Removing libdbd-pg-perl (3.7.4-3) ... Removing libdbd-sqlite3-perl:amd64 (1.62-3) ... Removing libdbi-perl:amd64 (1.642-1+deb10u2) ... Removing samtools (1.9-4) ... Removing libhts2:amd64 (1.9-12~deb10u1) ... Removing libdeflate0:amd64 (1.2-1) ... Removing libdevel-lexalias-perl (0.05-2+b1) ... Removing libdevel-caller-perl (2.06-2+b1) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-symdump-perl (2.18-3) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdivsufsort3:amd64 (2.0.1-4) ... Removing libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing libdrm-amdgpu1:amd64 (2.4.97-1) ... Removing libegl1:amd64 (1.1.0-1) ... Removing libegl-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing libgbm1:amd64 (18.3.6-2+deb10u1) ... Removing libdrm-intel1:amd64 (2.4.97-1) ... Removing libdrm-nouveau2:amd64 (2.4.97-1) ... Removing libdrm-radeon1:amd64 (2.4.97-1) ... Removing libdynaloader-functions-perl (0.003-1) ... Removing phyml (3:3.3.20180621-2) ... Removing openmpi-bin (3.1.3-11) ... Removing openssh-client (1:7.9p1-10+deb10u2) ... Removing libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libelf1:amd64 (0.176-1.1) ... Removing libxml-xpath-perl (1.44-1) ... Removing libxml-twig-perl (1:3.50-1.1) ... Removing libxml-dom-xpath-perl (0.14-3) ... Removing libxml-dom-perl (1.44-2) ... Removing libepsilon1:amd64 (0.9.2+dfsg-4) ... Removing liberror-perl (0.17027-2) ... Removing libopenmpi3:amd64 (3.1.3-11) ... Removing libpmix2:amd64 (3.1.2-3) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing python3-mypy (0.670-2) ... Removing python3-distutils (3.7.3-1) ... Removing python3-sparqlwrapper (1.8.2-0.1) ... Removing python3-ruamel.yaml (0.15.34-1+b1) ... Removing python3-bs4 (4.7.1-1) ... Removing python3-soupsieve (1.8+dfsg-1) ... Removing ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing python (2.7.16-1) ... Removing libtype-tiny-perl (1.004004-1) ... Removing libsvg-graph-perl (0.02-3) ... Removing libstatistics-descriptive-perl (3.0702-1) ... Removing liblist-moreutils-perl (0.416-1+b4) ... Removing libexporter-tiny-perl (1.002001-1) ... Removing libopenmpi2:amd64 (2.0.2-2) ... Removing libfabric1 (1.6.2-3) ... Removing libfcgi-perl (0.78-2+b3) ... Removing libtree-dagnode-perl (1.31-1) ... Removing libfile-slurp-tiny-perl (0.004-1) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing libspatialite7:amd64 (4.3.0a-5+b2) ... Removing libfreexl1:amd64 (1.0.5-3) ... Removing libfreezethaw-perl (0.5001-2) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libfyba0:amd64 (4.1.1-6) ... Removing libgd-svg-perl (0.33-2) ... Removing libgd-perl (2.71-2) ... Removing libgd3:amd64 (2.2.5-5.2) ... Removing rename (1.10-1) ... Removing libmailtools-perl (2.18-1) ... Removing perl-doc (5.28.1-6+deb10u1) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing mafft (7.407-2) ... Removing ruby2.3 (2.3.3-1+deb9u8) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u8) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libgeos-c1v5:amd64 (3.7.1-1) ... Removing libgeos-3.7.1:amd64 (3.7.1-1) ... Removing libgeotiff2:amd64 (1.4.3-1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing tm-align (20170708+dfsg-2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libgif7:amd64 (5.1.4-3) ... Removing libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Removing wise (2.4.1-21) ... Removing shared-mime-info (1.10-1) ... Removing libglib2.0-data (2.58.3-2+deb10u3) ... Removing libglvnd0:amd64 (1.1.0-1) ... Removing libgraph-perl (1:0.9704-1) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgs9-common (9.27~dfsg-2+deb10u5) ... Removing libpq5:amd64 (11.16-0+deb10u1) ... Removing libgts-bin (0.7.6+darcs121130-4) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libguard-perl (1.023-1+b5) ... Removing libhdf4-0-alt (4.2.13-4) ... Removing libhpdf-2.2.1 (2.2.1-1.1+b1) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.15-1) ... Removing libhttp-daemon-perl (6.01-3) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Removing python3-prov (1.5.2-1) ... Removing python3-lxml:amd64 (4.3.2-1+deb10u4) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libijs-0.35:amd64 (0.35-14) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libipc-run-perl (20180523.0-1) ... Removing libio-pty-perl (1:1.08-1.1+b5) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libole-storage-lite-perl (0.19-2+deb10u1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-sharelite-perl (0.17-4+b3) ... Removing libjansson4:amd64 (2.12-1) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjbig2dec0:amd64 (0.16-1+deb10u1) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing libjs-scriptaculous (1.9.0-2) ... Removing libjs-prototype (1.7.1-3) ... Removing libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Removing libjson-perl (4.02000-1) ... Removing libkmlxsd1:amd64 (1.3.0-7) ... Removing libkmlregionator1:amd64 (1.3.0-7) ... Removing libkmlconvenience1:amd64 (1.3.0-7) ... Removing libkmlengine1:amd64 (1.3.0-7) ... Removing libkmldom1:amd64 (1.3.0-7) ... Removing liblab-gamut1 (2.40.1-6+deb10u1) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing libodbc1:amd64 (2.3.6-0.1) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Removing libmath-spline-perl (0.02-2) ... Removing libmath-derivative-perl (1.01-1) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libmldbm-perl (2.05-2) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Removing procps (2:3.3.15-2) ... Removing libnl-route-3-dev:amd64 (3.4.0-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-dev:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libnss3:amd64 (2:3.42.1-1+deb10u5) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libogdi3.2 (3.2.1+ds-4) ... Removing libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Removing libossp-uuid-perl (1.6.2-1.5+b7) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Removing libpadwalker-perl (2.3-1+b1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967015+dfsg-2) ... Removing libpathplan4 (2.40.1-6+deb10u1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpopt0:amd64 (1.16-12) ... Removing libpostscript-perl (0.06-3) ... Removing libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Removing libprocps7:amd64 (2:3.3.15-2) ... Removing proj-bin (5.2.0-1) ... Removing libproj13:amd64 (5.2.0-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing libqhull7:amd64 (2015.2-4) ... Removing sqlite3 (3.27.2-3+deb10u1) ... Removing libreadonly-perl (2.050-1) ... Removing libref-util-perl (0.204-1) ... Removing libref-util-xs-perl (0.117-1+b1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsensors5:amd64 (1:3.5.0-3) ... Removing libsensors-config (1:3.5.0-3) ... Removing libset-scalar-perl (1.29-2) ... Removing m4 (1.4.18-2) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libsort-naturally-perl (1.03-2) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libstaden-read13:amd64 (1.14.11-6) ... Removing libstrictures-perl (2.000005-1) ... Removing libstring-approx-perl (3.28-1+b1) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-name-perl (0.21-1+b3) ... Removing libsub-quote-perl (2.005001-1) ... Removing libsvg-perl (2.84-1) ... Removing libtask-weaken-perl (1.06-1) ... Removing libterm-readkey-perl (2.38-1) ... Removing libtext-iconv-perl (1.7-5+b7) ... Removing libthai-data (0.1.28-2) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtype-tiny-xs-perl (0.014-1+b1) ... Removing libunicode-map-perl (0.112-12+b1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libuv1:amd64 (1.24.1-1+deb10u1) ... Removing libwayland-client0:amd64 (1.16.0-1) ... Removing libwayland-server0:amd64 (1.16.0-1) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing xauth (1:1.0.10-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb-xfixes0:amd64 (1.13.1-2) ... Removing libxcb-dri2-0:amd64 (1.13.1-2) ... Removing libxcb-dri3-0:amd64 (1.13.1-2) ... Removing libxcb-glx0:amd64 (1.13.1-2) ... Removing libxcb-present0:amd64 (1.13.1-2) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libxcb-sync1:amd64 (1.13.1-2) ... Removing libxdamage1:amd64 (1:1.1.4-3+b3) ... Removing libxdot4 (2.40.1-6+deb10u1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxml-sax-writer-perl (0.57-1) ... Removing libxml-filter-buffertext-perl (1.01-6) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-libxslt-perl (1.96-1+b1) ... Removing libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-1) ... Removing libxml-perl (0.08-3) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.09-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Removing python3-yaml (3.13-2) ... Removing libyaml-libyaml-perl (0.76+repack-1) ... Removing libyaml-perl (1.27-1) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing lynx-common (2.8.9rel.1-3+deb10u1) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing maq (0.7.1-8) ... Removing mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing menu (2.1.47+b1) ... Removing muscle (1:3.8.1551-2) ... Removing mustang (3.2.3-3) ... Removing mysql-common (5.8+1.0.5) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing ncoils (2002-7) ... Removing nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing openmpi-common (3.1.3-11) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing phylip (1:3.697+dfsg-1) ... Removing poa (2.0+20060928-7) ... Removing poppler-data (0.4.9-2) ... Removing prank (0.0.170427+dfsg-2) ... Removing primer3 (2.4.0-2) ... Removing probalign (1.4-8) ... Removing probcons (1.12-12) ... Removing proda (1.0-12) ... Removing proj-data (5.2.0-1) ... Removing psmisc (23.2-1+deb10u1) ... Removing publicsuffix (20220811.1734-0+deb10u1) ... Removing python2-minimal (2.7.16-1) ... Removing python3-cachecontrol (0.11.7-1) ... Removing python3-requests (2.21.0-1) ... Removing python3-certifi (2018.8.24-1) ... Removing python3-chardet (3.0.4-3) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-networkx (2.2-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-html5lib (1.0.1-1) ... Removing python3-idna (2.6-1) ... Removing python3-rdflib-jsonld (0.4.0-4) ... Removing python3-rdflib (4.2.2-2) ... Removing python3-isodate (0.6.0-1) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-lockfile (1:0.12.2-2) ... Removing python3-mistune (0.8.4-1) ... Removing python3-mypy-extensions (0.4.1-1) ... Removing python3-olefile (0.46-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-psutil (5.5.1-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-shellescape (3.4.1-3) ... Removing python3-urllib3 (1.24.1-1) ... Removing python3-six (1.12.0-1) ... Removing python3-typed-ast (1.3.1-1) ... Removing python3-typing-extensions (3.7.2-1) ... Removing python3-webencodings (0.5.1-1) ... Removing raxml (8.2.12+dfsg-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing sim4 (0.0.20121010-5) ... Removing ssl-cert (1.0.39) ... Removing t-coffee (12.00.7fb08c2-4) ... Removing tigr-glimmer (3.02b-2) ... Removing tzdata (2021a-0+deb10u6) ... Removing unzip (6.0-23+deb10u2) ... Removing wise-data (2.4.1-21) ... Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing bioperl (1.7.2-3) ... Removing cpp-8 (8.3.0-6) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-liberation (1:1.07.4-9) ... dpkg: warning: while removing fonts-liberation, directory '/usr/share/fonts/truetype/liberation' not empty so not removed Removing libtest-most-perl (0.35-1) ... Removing libtest-differences-perl (0.65-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-diff-perl (1.19.03-2) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libcups2:amd64 (2.2.10-6+deb10u6) ... Removing libavahi-client3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common-data:amd64 (0.7-4+deb10u1) ... Removing libbio-perl-perl (1.7.2-3) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing libdata-stag-perl (0.14-2) ... Removing libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Removing libdevel-stacktrace-perl (2.0300-1) ... Removing libdrm2:amd64 (2.4.97-1) ... Removing libdrm-common (2.4.97-1) ... Removing libxml-parser-perl (2.44-4) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libio-string-perl (1.08-3) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libkmlbase1:amd64 (1.3.0-7) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libminizip1:amd64 (1.1-8+b1) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (8.3.0-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1) ... Removing libtest-deep-perl (1.128-1) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing liburiparser1:amd64 (0.9.1-1+deb10u1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing mime-support (3.62) ... Removing ucf (3.0038+nmu1) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing libwww-perl (6.36-2) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.04-1) ... Removing rake (12.3.1-3+deb10u1) ... Removing ruby (1:2.5.1) ... Removing ruby2.5 (2.5.5-3+deb10u4) ... Removing libruby2.5:amd64 (2.5.5-3+deb10u4) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.04-1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing libio-socket-ssl-perl (2.060-3) ... Removing odbcinst1debian2:amd64 (2.3.6-0.1) ... Removing odbcinst (2.3.6-0.1) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing libnet-http-perl (6.18-1) ... Removing libnet-ssleay-perl (1.85-2+deb10u1) ... Removing libreadline7:amd64 (7.0-5) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing netbase (5.6) ... Removing perl-openssl-defaults:amd64 (3) ... Removing readline-common (7.0-5) ... Removing ruby-did-you-mean (1.2.1-1) ... Removing ruby-minitest (5.11.3-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.2.8-1) ... Removing ruby-power-assert (1.1.1-1) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing rubygems-integration (1.11+deb10u1) ... Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2+deb10u1) ... Removing liburi-perl (1.76-1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 4m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'remove', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++-', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libev-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-c3:amd64', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvm-ec2-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'gbrowse'] 4m19.2s INFO: Running scripts post_remove 4m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_remove_exceptions'] 4m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_remove_exceptions'] 4m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--purge', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libev-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-c3:amd64', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvm-ec2-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 4m21.5s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed (Reading database ... 5462 files and directories currently installed.) Purging configuration files for apache2 (2.4.38-3+deb10u8) ... dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed Purging configuration files for autoconf (2.69-11) ... dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed Purging configuration files for beignet-opencl-icd:amd64 (1.3.2-6+b10) ... dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed Purging configuration files for blends-common (0.7.2) ... dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-6) ... dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed dpkg: warning: ignoring request to remove cwltool which isn't installed Purging configuration files for dbus (1.12.20-0+deb10u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: while removing fonts-droid-fallback, directory '/usr/share/fonts/truetype/droid' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for fonts-noto-mono (20181227-1) ... dpkg: warning: while removing fonts-noto-mono, directory '/usr/share/fonts/truetype/noto' not empty so not removed dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed Purging configuration files for gawk (1:4.2.1+dfsg-1) ... dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed dpkg: warning: ignoring request to remove gdal-data which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-8 which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed Purging configuration files for graphviz (2.40.1-6+deb10u1) ... Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... dpkg: warning: while removing gsfonts, directory '/usr/share/fonts/type1/gsfonts' not empty so not removed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove hyphy-mpi which isn't installed Purging configuration files for ibverbs-providers:amd64 (22.1-1) ... dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.10-3) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarmadillo9 which isn't installed dpkg: warning: ignoring request to remove libarpack2 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libasync-interrupt-perl which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libberkeleydb-perl which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-coordinate-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-scf-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcaf-openmpi-3 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcharls2 which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed Purging configuration files for libcoarrays-dev:amd64 (2.4.0-2) ... dpkg: warning: ignoring request to remove libcoarrays-openmpi-dev which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcupsfilters1 which isn't installed dpkg: warning: ignoring request to remove libcupsimage2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdap25 which isn't installed dpkg: warning: ignoring request to remove libdapclient6v5 which isn't installed dpkg: warning: ignoring request to remove libdapserver7v5 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-callchecker-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-caller-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-globaldestruction-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-lexalias-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libepsilon1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libev-perl which isn't installed dpkg: warning: ignoring request to remove libevent-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreexl1 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libfyba0 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd-svg-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdal20 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgeos-3.7.1 which isn't installed dpkg: warning: ignoring request to remove libgeos-c1v5 which isn't installed dpkg: warning: ignoring request to remove libgeotiff2 which isn't installed dpkg: warning: ignoring request to remove libgfortran-8-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove 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configuration files for libnl-3-200:amd64 (3.4.0-1) ... dpkg: warning: ignoring request to remove libnl-3-dev which isn't installed dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnl-route-3-dev which isn't installed dpkg: warning: ignoring request to remove libnode64 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma-dev which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libodbc1 which isn't installed dpkg: warning: ignoring request to remove libogdi3.2 which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed Purging configuration files for libopenmpi-dev:amd64 (3.1.3-11) ... dpkg: warning: ignoring request to remove libopenmpi2 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libpadwalker-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't 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dpkg: warning: ignoring request to remove libstaden-read11 which isn't installed dpkg: warning: ignoring request to remove libstaden-read13 which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstdc++-8-dev which isn't installed dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-quote-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libsuperlu5 which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't 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libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove 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request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (1.00+dfsg-1) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for lynx (2.8.9rel.1-3+deb10u1) ... Purging configuration files for lynx-common (2.8.9rel.1-3+deb10u1) ... dpkg: warning: ignoring request to remove m4 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-common (1:10.3.34-0+deb10u1) ... Purging configuration files for med-config (3.3) ... Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.0.5) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (5.6) ... dpkg: warning: ignoring request to remove nodejs which isn't installed dpkg: warning: ignoring request to remove nodejs-doc which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for odbcinst (2.3.6-0.1) ... dpkg: warning: ignoring request to remove odbcinst1debian2 which isn't installed Purging configuration files for openmpi-bin (3.1.3-11) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:7.9p1-10+deb10u2) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... Purging configuration files for perl-doc (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.9-2) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.4.0-2) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed Purging configuration files for procps (2:3.3.15-2) ... dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed Purging configuration files for psmisc (23.2-1+deb10u1) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gdal which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lockfile which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mistune which isn't installed dpkg: warning: ignoring request to remove python3-mypy which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-rdflib-jsonld which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-shellescape which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-sparqlwrapper which isn't installed dpkg: warning: ignoring request to remove python3-typed-ast which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove ruby2.5 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.10-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove sqlite3 which isn't installed Purging configuration files for ssl-cert (1.0.39) ... dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 4m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--purge', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'beignet-opencl-icd:amd64', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbinutils:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-caller-perl', 'libdevel-globaldestruction-perl', 'libdevel-lexalias-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libev-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgbm1:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhmsbeagle1v5', 'libhpdf-2.2.1', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts1:amd64', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-c3:amd64', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi2:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpadwalker-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps6:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstaden-read11:amd64', 'libstaden-read13:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'libunistring0:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvm-ec2-perl', 'libwayland-client0:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-doc', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'samtools', 'sgml-base', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'tzdata', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 4m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--purge', 'gbrowse'] 4m21.5s DUMP: (Reading database ... 5089 files and directories currently installed.) Purging configuration files for gbrowse (2.56+dfsg-4) ... 4m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--purge', 'gbrowse'] 4m21.5s INFO: Running scripts post_purge 4m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_purge_exceptions'] 4m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_purge_exceptions'] 4m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--purge', '--pending'] 4m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--purge', '--pending'] 4m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--remove', '--pending'] 4m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg', '--remove', '--pending'] 4m21.6s INFO: Running scripts post_test 4m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_test_exceptions'] 4m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'tmp/scripts/post_test_exceptions'] 4m21.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 4m22.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 4m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg-divert', '--list'] 4m22.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 4m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'dpkg-divert', '--list'] 4m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'clean'] 4m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc_els25h', 'apt-get', 'clean'] 4m22.2s DEBUG: Recording chroot state 4m22.8s INFO: Warning: Package purging left files on system: /etc/ca-certificates.conf.dpkg-old not owned /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: gsfonts, fonts-noto-mono, fonts-glyphicons-halflings, poppler-data, fonts-lato, fonts-liberation, fonts-droid-fallback, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-noto-mono, fonts-glyphicons-halflings, fonts-lato, fonts-liberation, fonts-droid-fallback, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/droid/ owned by: fonts-droid-fallback /usr/share/fonts/truetype/droid/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/noto/ owned by: fonts-noto-mono /usr/share/fonts/truetype/noto/.uuid not owned /usr/share/fonts/type1/ owned by: gsfonts /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/gsfonts/ owned by: gsfonts /usr/share/fonts/type1/gsfonts/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned 4m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/shm'] 4m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/shm'] 4m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/console'] 4m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/console'] 4m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/ptmx'] 4m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/ptmx'] 4m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/pts'] 4m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/dev/pts'] 4m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/proc'] 4m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc_els25h/proc'] 4m23.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 4m23.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpc_els25h'] 4m23.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpc_els25h 4m23.4s INFO: PASS: Upgrading between Debian distributions. 4m23.4s INFO: PASS: All tests. 4m23.4s INFO: piuparts run ends. ret=0 End: 2022-11-29 10:54:47 GMT