Start: 2022-12-16 14:31:53 GMT [stretch] Package: r-bioc-variantannotation Source: r-bioc-variantannotation (1.20.2-1) Version: 1.20.2-1+b1 Installed-Size: 2781 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: r-base-core (>= 3.3.3-1), r-api-3, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.7.1), r-bioc-genomicranges (>= 1.19.47), r-bioc-summarizedexperiment (>= 0.3.1), r-bioc-rsamtools (>= 1.23.10), r-cran-dbi, r-bioc-biobase, r-bioc-s4vectors (>= 0.9.47), r-bioc-iranges (>= 2.3.25), r-bioc-xvector (>= 0.5.6), r-bioc-biostrings (>= 2.33.5), r-bioc-annotationdbi (>= 1.27.9), r-bioc-bsgenome (>= 1.37.6), r-bioc-rtracklayer (>= 1.25.16), r-bioc-genomicfeatures (>= 1.19.17), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3) Suggests: r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2 Description: BioConductor annotation of genetic variants Homepage: https://bioconductor.org/packages/VariantAnnotation/ Description-md5: 17670e83de551a30abddcb85706e9bf5 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.20.2-1+b1_amd64.deb Size: 2233198 MD5sum: 2e9112f86d136e73cf77b9c24a94024a SHA256: 4a9f991cb3a123797930f2b0f166951a82296cd0d8c8528aa831af8da82e8eb5 [buster] Package: r-bioc-variantannotation Version: 1.28.10-1 Installed-Size: 4043 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.2-1), r-api-3.5, r-api-bioc-3.8, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-bioc-summarizedexperiment (>= 1.9.9), r-bioc-rsamtools (>= 1.33.6), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.17.24), r-bioc-iranges (>= 2.13.13), r-bioc-xvector (>= 0.19.7), r-bioc-biostrings (>= 2.47.6), r-bioc-annotationdbi (>= 1.27.9), r-bioc-rtracklayer (>= 1.39.7), r-bioc-bsgenome (>= 1.47.3), r-bioc-genomicfeatures (>= 1.31.3), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3) Recommends: r-cran-runit, r-bioc-snpstats Suggests: r-bioc-annotationhub, r-cran-ggplot2 Description: BioConductor annotation of genetic variants Homepage: https://bioconductor.org/packages/VariantAnnotation/ Description-md5: 17670e83de551a30abddcb85706e9bf5 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.28.10-1_amd64.deb Size: 2995440 MD5sum: 5a73575e59ec9a4ac27741f27a804580 SHA256: cb0be6a108742b3df2d2bd013ab97c4c6c2f48cea5cd8ca1a7ff7e2878a6cfd1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt r-bioc-variantannotation=1.28.10-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt r-bioc-variantannotation=1.28.10-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmprz3y4fko 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmprz3y4fko 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/shm'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/shm'] 0m1.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.3s DEBUG: Created policy-rc.d and chmodded it. 0m1.3s DEBUG: Created resolv.conf. 0m1.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmprz3y4fko/tmp/scripts/ 0m1.3s INFO: Running scripts post_chroot_unpack 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'update'] 0m2.2s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s INFO: Running scripts post_setup 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 0m3.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 0m3.8s INFO: Running scripts is_testable 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s INFO: Running scripts pre_test 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_test_root_password'] 0m3.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_test_root_password'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-variantannotation'] 0m4.0s DUMP: Package: r-bioc-variantannotation Source: r-bioc-variantannotation (1.20.2-1) Version: 1.20.2-1+b1 Installed-Size: 2781 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: r-base-core (>= 3.3.3-1), r-api-3, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.7.1), r-bioc-genomicranges (>= 1.19.47), r-bioc-summarizedexperiment (>= 0.3.1), r-bioc-rsamtools (>= 1.23.10), r-cran-dbi, r-bioc-biobase, r-bioc-s4vectors (>= 0.9.47), r-bioc-iranges (>= 2.3.25), r-bioc-xvector (>= 0.5.6), r-bioc-biostrings (>= 2.33.5), r-bioc-annotationdbi (>= 1.27.9), r-bioc-bsgenome (>= 1.37.6), r-bioc-rtracklayer (>= 1.25.16), r-bioc-genomicfeatures (>= 1.19.17), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3) Suggests: r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2 Description-en: BioConductor annotation of genetic variants This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes. Description-md5: 17670e83de551a30abddcb85706e9bf5 Homepage: https://bioconductor.org/packages/VariantAnnotation/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.20.2-1+b1_amd64.deb Size: 2233198 MD5sum: 2e9112f86d136e73cf77b9c24a94024a SHA256: 4a9f991cb3a123797930f2b0f166951a82296cd0d8c8528aa831af8da82e8eb5 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-variantannotation'] 0m4.0s INFO: apt-cache knows about the following packages: r-bioc-variantannotation 0m4.0s INFO: Running scripts pre_install 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_extras'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_extras'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy'] 0m4.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy', 'r-bioc-variantannotation'] 0m4.1s DUMP: r-bioc-variantannotation: Installed: (none) Candidate: 1.20.2-1+b1 Version table: 1.20.2-1+b1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy', 'r-bioc-variantannotation'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-y', 'install', 'r-bioc-variantannotation'] 0m38.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-6 dbus dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-6 gcc gcc-6 gfortran gfortran-6 gnupg gnupg-agent gnupg-l10n icu-devtools krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan3 libassuan0 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcurl3 libdatrie1 libdbus-1-3 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-6-dev libgdbm3 libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu57 libidn11 libidn2-0 libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libllvm3.9 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmpc3 libmpfr4 libmpx2 libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnpth0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpsl5 libquadmath0 libreadline-dev libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libtasn1-6 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libtxc-dxtn-s2tc libubsan0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev littler lsb-base make manpages manpages-dev netbase openssl patch perl perl-modules-5.24 perl-openssl-defaults pinentry-curses pkg-config publicsuffix r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-dbi r-cran-digest r-cran-foreign r-cran-futile.logger r-cran-futile.options r-cran-kernsmooth r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-snow r-cran-spatial r-cran-survival r-cran-xml r-doc-html r-recommended readline-common rename sgml-base shared-mime-info tzdata ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev Suggested packages: binutils-doc devscripts cpp-doc gcc-6-locales default-dbus-session-bus | dbus-session-bus dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring g++-multilib g++-6-multilib gcc-6-doc libstdc++6-6-dbg gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev parcimonie xloadimage scdaemon libdigest-hmac-perl libgssapi-perl liblapack-doc-man liblapack-doc glibc-doc gnutls-bin gpm krb5-doc krb5-user libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc pciutils readline-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libstdc++-6-doc tcl8.6 tk8.6 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl pinentry-doc ess r-doc-info | r-doc-pdf r-mathlib r-base-html debhelper texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db r-cran-runit r-bioc-graph r-cran-knitr r-cran-foreach r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi r-bioc-shortread r-bioc-annotate r-bioc-affy r-bioc-biocinstaller r-bioc-deseq2 r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-genefilter r-bioc-limma r-cran-data.table r-cran-jsonlite r-bioc-snpstats r-cran-ggplot2 r-cran-rmysql r-cran-testthat r-cran-getopt r-cran-inline r-cran-dbitest r-cran-rsprng r-cran-rlecuyer mozilla | www-browser sgml-base-doc mesa-utils nickle cairo-5c xorg-docs-core gvfs-bin The following NEW packages will be installed: autotools-dev binutils build-essential bzip2 bzip2-doc ca-certificates cdbs cpp cpp-6 dbus dirmngr dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core g++ g++-6 gcc gcc-6 gfortran gfortran-6 gnupg gnupg-agent gnupg-l10n icu-devtools krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan3 libassuan0 libatomic1 libauthen-sasl-perl libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcurl3 libdatrie1 libdbus-1-3 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libffi6 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libgcc-6-dev libgdbm3 libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu57 libidn11 libidn2-0 libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libllvm3.9 liblocale-gettext-perl liblsan0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmailtools-perl libmpc3 libmpfr4 libmpx2 libncurses5 libncurses5-dev libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnpth0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpsl5 libquadmath0 libreadline-dev libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libtasn1-6 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtsan0 libtxc-dxtn-s2tc libubsan0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 linux-libc-dev littler lsb-base make manpages manpages-dev netbase openssl patch perl perl-modules-5.24 perl-openssl-defaults pinentry-curses pkg-config publicsuffix r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-bitops r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-dbi r-cran-digest r-cran-foreign r-cran-futile.logger r-cran-futile.options r-cran-kernsmooth r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-snow r-cran-spatial r-cran-survival r-cran-xml r-doc-html r-recommended readline-common rename sgml-base shared-mime-info tzdata ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 309 newly installed, 0 to remove and 0 not upgraded. Need to get 241 MB of archives. After this operation, 806 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libpcrecpp0v5 amd64 2:8.39-3 [151 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libassuan0 amd64 2.4.3-2 [42.5 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 pinentry-curses amd64 1.0.0-2 [50.5 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libnpth0 amd64 1.3-1 [14.6 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 gnupg-agent amd64 2.1.18-8~deb9u4 [554 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 gnupg amd64 2.1.18-8~deb9u4 [1128 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78.9 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 dbus amd64 1.10.32-0+deb9u1 [213 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libedit2 amd64 3.1-20160903-3 [84.8 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 manpages all 4.10-2 [1222 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 binutils amd64 2.28-5 [3770 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libisl15 amd64 0.18-1 [564 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libmpc3 amd64 1.0.3-1+b2 [39.9 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 cpp-6 amd64 6.3.0-18+deb9u1 [6584 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 cpp amd64 4:6.3.0-4 [18.7 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libcc1-0 amd64 6.3.0-18+deb9u1 [30.6 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27.3 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:82 http://deb.debian.org/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40.5 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11.2 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2296 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6900 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 gcc amd64 4:6.3.0-4 [5196 B] Get:92 http://deb.debian.org/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1420 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7094 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 g++ amd64 4:6.3.0-4 [1546 B] Get:95 http://deb.debian.org/debian stretch/main amd64 make amd64 4.1-9.1 [302 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libdpkg-perl all 1.18.25 [1287 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 patch amd64 2.7.5-1+deb9u2 [112 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 dpkg-dev all 1.18.25 [1595 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 build-essential amd64 12.3 [7346 B] Get:100 http://deb.debian.org/debian stretch/main amd64 bzip2-doc all 1.0.6-8.1 [307 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 cdbs all 0.4.150 [82.6 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 dirmngr amd64 2.1.18-8~deb9u4 [597 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libgfortran-6-dev amd64 6.3.0-18+deb9u1 [299 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 gfortran-6 amd64 6.3.0-18+deb9u1 [6916 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 gfortran amd64 4:6.3.0-4 [1356 B] Get:111 http://deb.debian.org/debian stretch/main amd64 icu-devtools amd64 57.1-6+deb9u4 [178 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-perl all 1.19.03-1 [48.7 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4+b2 [11.6 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 libblas-dev amd64 3.7.0-2 [162 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:130 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 libdrm2 amd64 2.4.74-1 [36.2 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 libdrm-amdgpu1 amd64 2.4.74-1 [26.4 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 libdrm-intel1 amd64 2.4.74-1 [68.7 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 libdrm-nouveau2 amd64 2.4.74-1 [25.1 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 libdrm-radeon1 amd64 2.4.74-1 [30.2 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 libelf1 amd64 0.168-1 [157 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 libipc-system-simple-perl all 1.25-3 [26.9 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 libfile-basedir-perl all 0.07-1 [17.5 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 libfile-desktopentry-perl all 0.22-1 [19.2 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 libfile-fcntllock-perl amd64 0.22-3+b2 [35.3 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:147 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:148 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:149 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:150 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:151 http://deb.debian.org/debian stretch/main amd64 libfile-mimeinfo-perl all 0.27-1 [50.2 kB] Get:152 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:153 http://deb.debian.org/debian stretch/main amd64 libfontenc1 amd64 1:1.1.3-1+b2 [24.4 kB] Get:154 http://deb.debian.org/debian stretch/main amd64 libllvm3.9 amd64 1:3.9.1-9 [11.3 MB] Get:155 http://deb.debian.org/debian stretch/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:156 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-dri amd64 13.0.6-1+b2 [4536 kB] Get:157 http://deb.debian.org/debian stretch/main amd64 libglapi-mesa amd64 13.0.6-1+b2 [58.9 kB] Get:158 http://deb.debian.org/debian stretch/main amd64 libx11-xcb1 amd64 2:1.6.4-3+deb9u1 [183 kB] Get:159 http://deb.debian.org/debian stretch/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:160 http://deb.debian.org/debian stretch/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:161 http://deb.debian.org/debian stretch/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:162 http://deb.debian.org/debian stretch/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:163 http://deb.debian.org/debian stretch/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:164 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:165 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:166 http://deb.debian.org/debian stretch/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:167 http://deb.debian.org/debian stretch/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:168 http://deb.debian.org/debian stretch/main amd64 libgl1-mesa-glx amd64 13.0.6-1+b2 [167 kB] Get:169 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:170 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:171 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:172 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:173 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:174 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:175 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:176 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:177 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:178 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:179 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:180 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:181 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:182 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:183 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:184 http://deb.debian.org/debian stretch/main amd64 libicu-dev amd64 57.1-6+deb9u4 [16.5 MB] Get:185 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:186 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:187 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:188 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:189 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo-dev amd64 1:1.5.1-2 [210 kB] Get:190 http://deb.debian.org/debian stretch/main amd64 libjpeg-dev all 1:1.5.1-2 [56.1 kB] Get:191 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:192 http://deb.debian.org/debian stretch/main amd64 liblapack-dev amd64 3.7.0-2 [2170 kB] Get:193 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:194 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:195 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:196 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:197 http://deb.debian.org/debian stretch/main amd64 liblzma-dev amd64 5.2.2-1.2+b1 [292 kB] Get:198 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:199 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:200 http://deb.debian.org/debian stretch/main amd64 libtinfo-dev amd64 6.0+20161126-1+deb9u2 [79.2 kB] Get:201 http://deb.debian.org/debian stretch/main amd64 libncurses5-dev amd64 6.0+20161126-1+deb9u2 [175 kB] Get:202 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:203 http://deb.debian.org/debian stretch/main amd64 libxml-twig-perl all 1:3.50-1 [179 kB] Get:204 http://deb.debian.org/debian stretch/main amd64 libnet-dbus-perl amd64 1.1.0-4+b1 [179 kB] Get:205 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:206 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:207 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:208 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:209 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:210 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:211 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:212 http://deb.debian.org/debian stretch/main amd64 libpcre16-3 amd64 2:8.39-3 [258 kB] Get:213 http://deb.debian.org/debian stretch/main amd64 libpcre32-3 amd64 2:8.39-3 [248 kB] Get:214 http://deb.debian.org/debian stretch/main amd64 libpcre3-dev amd64 2:8.39-3 [647 kB] Get:215 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:216 http://deb.debian.org/debian stretch/main amd64 libpng-dev amd64 1.6.28-1+deb9u1 [250 kB] Get:217 http://deb.debian.org/debian stretch/main amd64 libpng-tools amd64 1.6.28-1+deb9u1 [133 kB] Get:218 http://deb.debian.org/debian stretch/main amd64 libreadline-dev amd64 7.0-3 [132 kB] Get:219 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [102 kB] Get:220 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:221 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:222 http://deb.debian.org/debian stretch/main amd64 libtext-iconv-perl amd64 1.7-5+b4 [15.3 kB] Get:223 http://deb.debian.org/debian stretch/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:224 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:225 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:226 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:227 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:228 http://deb.debian.org/debian stretch/main amd64 libx11-protocol-perl all 0.56-7 [150 kB] Get:229 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:230 http://deb.debian.org/debian stretch/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:231 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:232 http://deb.debian.org/debian stretch/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:233 http://deb.debian.org/debian stretch/main amd64 libxcb-shape0 amd64 1.12-1 [96.2 kB] Get:234 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:235 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:236 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:237 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:238 http://deb.debian.org/debian stretch/main amd64 libxml-xpathengine-perl all 0.13-1 [39.1 kB] Get:239 http://deb.debian.org/debian stretch/main amd64 libxmuu1 amd64 2:1.1.2-2 [23.5 kB] Get:240 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:241 http://deb.debian.org/debian stretch/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:242 http://deb.debian.org/debian stretch/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:243 http://deb.debian.org/debian stretch/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:244 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:245 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:246 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:247 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:248 http://deb.debian.org/debian stretch/main amd64 r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:249 http://deb.debian.org/debian stretch/main amd64 littler all 0.3.1-1 [11.7 kB] Get:250 http://deb.debian.org/debian stretch/main amd64 manpages-dev all 4.10-2 [2145 kB] Get:251 http://deb.debian.org/debian stretch/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:252 http://deb.debian.org/debian stretch/main amd64 xauth amd64 1:1.0.9-1+b2 [39.6 kB] Get:253 http://deb.debian.org/debian stretch/main amd64 r-base-dev all 3.3.3-1 [4402 B] Get:254 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocgenerics all 0.20.0-1 [483 kB] Get:255 http://deb.debian.org/debian stretch/main amd64 r-bioc-biobase amd64 2.34.0-1 [1989 kB] Get:256 http://deb.debian.org/debian stretch/main amd64 r-bioc-s4vectors amd64 0.12.1-2+b1 [1114 kB] Get:257 http://deb.debian.org/debian stretch/main amd64 r-bioc-iranges amd64 2.8.1-1+b1 [1438 kB] Get:258 http://deb.debian.org/debian stretch/main amd64 r-cran-dbi amd64 0.5-1-1 [332 kB] Get:259 http://deb.debian.org/debian stretch/main amd64 r-cran-digest amd64 0.6.11-1 [112 kB] Get:260 http://deb.debian.org/debian stretch/main amd64 r-cran-memoise all 1.0.0-1 [24.4 kB] Get:261 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:262 http://deb.debian.org/debian stretch/main amd64 r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:263 http://deb.debian.org/debian stretch/main amd64 r-cran-rsqlite amd64 1.1-2-1 [745 kB] Get:264 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationdbi all 1.36.1-2 [4190 kB] Get:265 http://deb.debian.org/debian stretch/main amd64 r-cran-lambda.r all 1.1.9-1 [66.7 kB] Get:266 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.options all 1.0.0-2 [15.4 kB] Get:267 http://deb.debian.org/debian stretch/main amd64 r-cran-futile.logger all 1.4.3-1 [90.8 kB] Get:268 http://deb.debian.org/debian stretch/main amd64 r-cran-snow all 1:0.4.2-1 [65.0 kB] Get:269 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocparallel all 1.8.1-1 [633 kB] Get:270 http://deb.debian.org/debian stretch/main amd64 r-cran-xml amd64 3.98-1.5-1 [1652 kB] Get:271 http://deb.debian.org/debian stretch/main amd64 r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:272 http://deb.debian.org/debian stretch/main amd64 r-cran-rcurl amd64 1.95-4.8-2 [607 kB] Get:273 http://deb.debian.org/debian stretch/main amd64 r-bioc-biomart all 2.30.0-1 [183 kB] Get:274 http://deb.debian.org/debian stretch/main amd64 r-bioc-xvector amd64 0.14.0-1+b1 [338 kB] Get:275 http://deb.debian.org/debian stretch/main amd64 r-bioc-biostrings amd64 2.42.1-1 [13.5 MB] Get:276 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomeinfodb all 1.10.3-1 [14.7 MB] Get:277 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicranges amd64 1.26.2-1+b1 [1474 kB] Get:278 http://deb.debian.org/debian stretch/main amd64 r-bioc-rsamtools amd64 1.26.1-2+b1 [3241 kB] Get:279 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:280 http://deb.debian.org/debian stretch/main amd64 r-cran-matrix amd64 1.2-7.1-1 [2311 kB] Get:281 http://deb.debian.org/debian stretch/main amd64 r-bioc-summarizedexperiment all 1.4.0-2 [1354 kB] Get:282 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicalignments amd64 1.10.0-1+b1 [1487 kB] Get:283 http://deb.debian.org/debian stretch/main amd64 r-bioc-rtracklayer amd64 1.34.1-1 [1831 kB] Get:284 http://deb.debian.org/debian stretch/main amd64 r-bioc-bsgenome all 1.42.0-2 [6483 kB] Get:285 http://deb.debian.org/debian stretch/main amd64 r-bioc-genomicfeatures all 1.26.2-1 [1054 kB] Get:286 http://deb.debian.org/debian stretch/main amd64 r-bioc-variantannotation amd64 1.20.2-1+b1 [2233 kB] Get:287 http://deb.debian.org/debian stretch/main amd64 r-cran-boot all 1.3-18-2 [577 kB] Get:288 http://deb.debian.org/debian stretch/main amd64 r-cran-mass amd64 7.3-45-1 [1017 kB] Get:289 http://deb.debian.org/debian stretch/main amd64 r-cran-class amd64 7.3-14-1 [80.9 kB] Get:290 http://deb.debian.org/debian stretch/main amd64 r-cran-cluster amd64 2.0.5-1 [490 kB] Get:291 http://deb.debian.org/debian stretch/main amd64 r-cran-codetools all 0.2-15-1 [46.2 kB] Get:292 http://deb.debian.org/debian stretch/main amd64 r-cran-foreign amd64 0.8.67-1 [211 kB] Get:293 http://deb.debian.org/debian stretch/main amd64 r-cran-kernsmooth amd64 2.23-15-2 [81.7 kB] Get:294 http://deb.debian.org/debian stretch/main amd64 r-cran-nlme amd64 3.1.129-1 [2042 kB] Get:295 http://deb.debian.org/debian stretch/main amd64 r-cran-mgcv amd64 1.8-16-1 [2106 kB] Get:296 http://deb.debian.org/debian stretch/main amd64 r-cran-nnet amd64 7.3-12-1 [96.9 kB] Get:297 http://deb.debian.org/debian stretch/main amd64 r-cran-survival amd64 2.40-1-1 [4863 kB] Get:298 http://deb.debian.org/debian stretch/main amd64 r-cran-rpart amd64 4.1-10-2 [861 kB] Get:299 http://deb.debian.org/debian stretch/main amd64 r-cran-spatial amd64 7.3-11-1 [118 kB] Get:300 http://deb.debian.org/debian stretch/main amd64 r-doc-html all 3.3.3-1 [551 kB] Get:301 http://deb.debian.org/debian stretch/main amd64 r-recommended all 3.3.3-1 [2706 B] Get:302 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:303 http://deb.debian.org/debian stretch/main amd64 x11-utils amd64 7.7+3+b1 [202 kB] Get:304 http://deb.debian.org/debian stretch/main amd64 x11-xserver-utils amd64 7.7+7+b1 [167 kB] Get:305 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:306 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:307 http://deb.debian.org/debian stretch/main amd64 gnupg-l10n all 2.1.18-8~deb9u4 [893 kB] Get:308 http://deb.debian.org/debian stretch/main amd64 libtxc-dxtn-s2tc amd64 1.0+git20151227-2 [48.4 kB] Get:309 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 241 MB in 1s (134 MB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../001-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. 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Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../008-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../009-fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../010-libfontconfig1_2.11.0-6.7+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7+b1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../011-fontconfig_2.11.0-6.7+b1_amd64.deb ... Unpacking fontconfig (2.11.0-6.7+b1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../012-liblocale-gettext-perl_1.07-3+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b1) ... Selecting previously unselected package libpcrecpp0v5:amd64. Preparing to unpack .../013-libpcrecpp0v5_2%3a8.39-3_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.39-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../014-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../015-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../016-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../017-libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../018-libx11-data_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../019-libx11-6_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../020-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../021-lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) ... Selecting previously unselected package x11-common. Preparing to unpack .../022-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../023-libxss1_1%3a1.2.2-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.2-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../024-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package tzdata. Preparing to unpack .../025-tzdata_2020a-0+deb9u1_all.deb ... Unpacking tzdata (2020a-0+deb9u1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../026-libassuan0_2.4.3-2_amd64.deb ... Unpacking libassuan0:amd64 (2.4.3-2) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../027-pinentry-curses_1.0.0-2_amd64.deb ... Unpacking pinentry-curses (1.0.0-2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../028-libnpth0_1.3-1_amd64.deb ... Unpacking libnpth0:amd64 (1.3-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../029-readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../030-libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package gnupg-agent. Preparing to unpack .../031-gnupg-agent_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg-agent (2.1.18-8~deb9u4) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../032-libksba8_1.3.5-2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../033-libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Selecting previously unselected package gnupg. Preparing to unpack .../034-gnupg_2.1.18-8~deb9u4_amd64.deb ... Unpacking gnupg (2.1.18-8~deb9u4) ... Selecting previously unselected package libssl1.0.2:amd64. Preparing to unpack .../035-libssl1.0.2_1.0.2u-1~deb9u1_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../036-libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package netbase. Preparing to unpack .../037-netbase_5.4_all.deb ... Unpacking netbase (5.4) ... Selecting previously unselected package bzip2. Preparing to unpack .../038-bzip2_1.0.6-8.1_amd64.deb ... Unpacking bzip2 (1.0.6-8.1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../039-libapparmor1_2.11.0-3+deb9u2_amd64.deb ... Unpacking libapparmor1:amd64 (2.11.0-3+deb9u2) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../040-libdbus-1-3_1.10.32-0+deb9u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Selecting previously unselected package dbus. Preparing to unpack .../041-dbus_1.10.32-0+deb9u1_amd64.deb ... Unpacking dbus (1.10.32-0+deb9u1) ... Selecting previously unselected package krb5-locales. Preparing to unpack .../042-krb5-locales_1.15-1+deb9u1_all.deb ... Unpacking krb5-locales (1.15-1+deb9u1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../043-libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../044-libedit2_3.1-20160903-3_amd64.deb ... Unpacking libedit2:amd64 (3.1-20160903-3) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../045-libgmp10_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../046-libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../047-libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../048-libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../049-libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../050-libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../051-libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../052-libgnutls30_3.5.8-5+deb9u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u5) ... Selecting previously unselected package libgpm2:amd64. Preparing to unpack .../053-libgpm2_1.20.4-6.2+b1_amd64.deb ... Unpacking libgpm2:amd64 (1.20.4-6.2+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../054-libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) ... Selecting previously unselected package libkrb5support0:amd64. 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Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up manpages-dev (4.10-2) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libitm1:amd64 (6.3.0-18+deb9u1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up r-doc-html (3.3.3-1) ... Setting up netbase (5.4) ... 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Setting up libipc-system-simple-perl (1.25-3) ... Setting up libfile-basedir-perl (0.07-1) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up libio-html-perl (1.001-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-9) ... Setting up libgfortran-6-dev:amd64 (6.3.0-18+deb9u1) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libdpkg-perl (1.18.25) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libicu-dev (57.1-6+deb9u4) ... Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libncurses5-dev:amd64 (6.0+20161126-1+deb9u2) ... 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Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxcb-shape0:amd64 (1.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up dirmngr (2.1.18-8~deb9u4) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libhttp-negotiate-perl (6.00-2) ... Setting up gfortran-6 (6.3.0-18+deb9u1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up gcc (4:6.3.0-4) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up xauth (1:1.0.9-1+b2) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up g++ (4:6.3.0-4) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up gfortran (4:6.3.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libmailtools-perl (2.18-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libblas-dev (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up build-essential (12.3) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libgl1-mesa-glx:amd64 (13.0.6-1+b2) ... Setting up x11-xserver-utils (7.7+7+b1) ... Setting up liblapack-dev (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up x11-utils (7.7+3+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.1-1) ... Setting up littler (0.3.1-1) ... Setting up r-cran-nnet (7.3-12-1) ... Setting up r-base-dev (3.3.3-1) ... Setting up r-bioc-biocgenerics (0.20.0-1) ... Setting up r-bioc-biobase (2.34.0-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-cran-dbi (0.5-1-1) ... Setting up r-cran-spatial (7.3-11-1) ... Setting up r-cran-pkgkitten (0.1.4-1) ... Setting up r-cran-futile.options (1.0.0-2) ... Setting up r-cran-rcpp (0.12.9-1) ... Setting up r-cran-mass (7.3-45-1) ... Setting up r-cran-rcurl (1.95-4.8-2) ... Setting up r-cran-digest (0.6.11-1) ... Setting up r-cran-cluster (2.0.5-1) ... Setting up r-cran-lambda.r (1.1.9-1) ... Setting up r-cran-snow (1:0.4.2-1) ... Setting up r-cran-memoise (1.0.0-1) ... Setting up r-bioc-s4vectors (0.12.1-2+b1) ... Setting up r-cran-boot (1.3-18-2) ... Setting up r-cran-xml (3.98-1.5-1) ... Setting up r-cran-codetools (0.2-15-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-nlme (3.1.129-1) ... Setting up r-cran-foreign (0.8.67-1) ... Setting up r-cran-class (7.3-14-1) ... Setting up r-cran-kernsmooth (2.23-15-2) ... Setting up r-cran-futile.logger (1.4.3-1) ... Setting up r-cran-rsqlite (1.1-2-1) ... Setting up r-bioc-iranges (2.8.1-1+b1) ... Setting up r-bioc-biocparallel (1.8.1-1) ... Setting up r-cran-matrix (1.2-7.1-1) ... Setting up r-bioc-genomeinfodb (1.10.3-1) ... Setting up r-bioc-xvector (0.14.0-1+b1) ... Setting up r-cran-mgcv (1.8-16-1) ... Setting up r-bioc-biostrings (2.42.1-1) ... Setting up r-bioc-annotationdbi (1.36.1-2) ... Setting up r-cran-survival (2.40-1-1) ... Setting up r-bioc-genomicranges (1.26.2-1+b1) ... Setting up r-bioc-summarizedexperiment (1.4.0-2) ... Setting up r-bioc-biomart (2.30.0-1) ... Setting up r-cran-rpart (4.1-10-2) ... Setting up r-bioc-rsamtools (1.26.1-2+b1) ... Setting up r-bioc-genomicalignments (1.10.0-1+b1) ... Setting up r-recommended (3.3.3-1) ... Setting up r-bioc-rtracklayer (1.34.1-1) ... Setting up r-bioc-genomicfeatures (1.26.2-1) ... Setting up r-bioc-bsgenome (1.42.0-2) ... Setting up r-bioc-variantannotation (1.20.2-1+b1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libwww-perl (6.15-1) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libxml-twig-perl (1:3.50-1) ... Setting up libnet-dbus-perl (1.1.0-4+b1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-y', 'install', 'r-bioc-variantannotation'] 0m38.7s INFO: Running scripts post_install 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_install_exceptions'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_install_exceptions'] 0m38.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 0m40.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 0m40.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmprz3y4fko to buster 0m40.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m40.1s INFO: Running scripts pre_distupgrade 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_exceptions'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_exceptions'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'update'] 0m43.2s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 2s (5864 kB/s) Reading package lists... 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'update'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-yf', 'dist-upgrade'] 1m57.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: cdbs g++-6 gnupg-agent libblas-common libgdbm3 libgl1-mesa-glx libicu57 libidn11 libperl5.24 libssl1.0.2 libstdc++-6-dev libtinfo-dev libtxc-dxtn-s2tc libunistring0 rename sgml-base xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libcurl3 libllvm3.9 libsensors4 The following NEW packages will be installed: autoconf automake binutils-common binutils-x86-64-linux-gnu cpp-8 e2fsprogs-l10n fdisk file fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++-8 gcc-7-base gcc-8 gcc-8-base gfortran-8 gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm ibverbs-providers javascript-common libasan5 libbinutils libbrotli1 libc-ares2 libcaf-openmpi-3 libcoarrays-dev libcoarrays-openmpi-dev libcom-err2 libcurl4 libdata-dump-perl libdrm-common libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libext2fs2 libfabric1 libfribidi0 libgcc-8-dev libgdbm-compat4 libgdbm6 libgfortran-8-dev libgfortran5 libgl1 libglvnd0 libglx-mesa0 libglx0 libgpg-error-l10n libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63 libio-stringy-perl libisl19 libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libllvm7 libltdl-dev libltdl7 liblua5.1-0 libmagic-mgc libmagic1 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnode64 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libperl5.28 libpmix2 libpsm-infinipath1 libpsm2-2 libqhull7 librdmacm1 libseccomp2 libsensors-config libsensors5 libsigsegv2 libstdc++-8-dev libtinfo6 libtool libtry-tiny-perl libubsan1 libunistring2 libuv1 libwebp6 libyaml-0-2 libzstd1 m4 mpi-default-bin node-highlight.js node-normalize.css nodejs nodejs-doc ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pandoc pandoc-data perl-modules-5.28 r-bioc-annotate r-bioc-annotationfilter r-bioc-biovizbase r-bioc-delayedarray r-bioc-ensembldb r-bioc-genefilter r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-protgenerics r-bioc-shortread r-bioc-snpstats r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchjobs r-cran-batchtools r-cran-bbmisc r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-blob r-cran-brew r-cran-caret r-cran-catools r-cran-checkmate r-cran-chron r-cran-cli r-cran-colorspace r-cran-crayon r-cran-curl r-cran-cvst r-cran-data.table r-cran-dbitest r-cran-ddalpha r-cran-deoptimr r-cran-desc r-cran-dichromat r-cran-dimred r-cran-domc r-cran-doparallel r-cran-dplyr r-cran-drr r-cran-e1071 r-cran-earth r-cran-evaluate r-cran-fansi r-cran-fastica r-cran-fastmatch r-cran-filehash r-cran-foreach r-cran-formatr r-cran-formula r-cran-fs r-cran-gdata r-cran-generics r-cran-geometry r-cran-ggplot2 r-cran-glue r-cran-gower r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-ipred r-cran-iterators r-cran-jsonlite r-cran-kernlab r-cran-knitr r-cran-labeling r-cran-later r-cran-latticeextra r-cran-lava r-cran-lazyeval r-cran-lubridate r-cran-magic r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-markdown r-cran-matrixstats r-cran-mda r-cran-mime r-cran-mlbench r-cran-mlmetrics r-cran-mockery r-cran-mockr r-cran-modelmetrics r-cran-multicore r-cran-munsell r-cran-numderiv r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-plotmo r-cran-plotrix r-cran-pls r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-prodlim r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpproll r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-rmpi r-cran-robustbase r-cran-rocr r-cran-rprojroot r-cran-rstudioapi r-cran-runit r-cran-scales r-cran-sendmailr r-cran-sfsmisc r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-squarem r-cran-stringi r-cran-stringr r-cran-sys r-cran-teachingdemos r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tikzdevice r-cran-timedate r-cran-tinytex r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-webutils r-cran-withr r-cran-xfun r-cran-xml2 r-cran-xtable r-cran-yaml The following packages will be upgraded: adduser apt autotools-dev base-files base-passwd bash binutils bsdutils build-essential bzip2 bzip2-doc ca-certificates cdbs coreutils cpp dash dbus debconf debian-archive-keyring debianutils diffutils dirmngr dpkg dpkg-dev e2fslibs e2fsprogs fakeroot findutils fontconfig fontconfig-config g++ gcc gfortran gnupg gnupg-agent gnupg-l10n gpgv grep gzip hostname icu-devtools init-system-helpers krb5-locales libacl1 libalgorithm-diff-perl libalgorithm-diff-xs-perl libapparmor1 libapt-pkg5.0 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libblas-dev libblas3 libblkid1 libbsd0 libbz2-1.0 libbz2-dev libc-bin libc-dev-bin libc6 libc6-dev libcairo2 libcap-ng0 libcc1-0 libcilkrts5 libcomerr2 libdatrie1 libdb5.3 libdbus-1-3 libdebconfclient0 libdpkg-perl libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfakeroot libfdisk1 libffi6 libfile-basedir-perl libfile-fcntllock-perl libfile-mimeinfo-perl libfontconfig1 libfreetype6 libgcc1 libgcrypt20 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpg-error0 libgpm2 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libhtml-parser-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-message-perl libhttp-negotiate-perl libicu-dev libidn11 libidn2-0 libio-socket-ssl-perl libipc-system-simple-perl libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblocale-gettext-perl liblsan0 liblwp-protocol-https-perl liblz4-1 liblzma-dev liblzma5 libmount1 libmpc3 libmpx2 libncurses5 libncurses5-dev libncursesw5 libnet-dbus-perl libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libnpth0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre16-3 libpcre3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpsl5 libquadmath0 libreadline-dev libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsm6 libsmartcols1 libsqlite3-0 libss2 libssh2-1 libssl1.1 libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtinfo5 libtk8.6 libtsan0 libubsan0 libudev1 liburi-perl libuuid1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcursor1 libxdamage1 libxft2 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxshmfence1 libxss1 libxt6 linux-libc-dev littler login lsb-base make manpages manpages-dev mount multiarch-support ncurses-base ncurses-bin netbase openssl passwd patch perl perl-base pinentry-curses pkg-config publicsuffix r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-bitops r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-dbi r-cran-digest r-cran-foreign r-cran-futile.logger r-cran-futile.options r-cran-kernsmooth r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-rcpp r-cran-rcurl r-cran-rpart r-cran-rsqlite r-cran-snow r-cran-spatial r-cran-survival r-cran-xml r-doc-html r-recommended readline-common rename sed sensible-utils shared-mime-info sysvinit-utils tar tzdata ucf unzip util-linux x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zlib1g zlib1g-dev 320 upgraded, 289 newly installed, 3 to remove and 0 not upgraded. Need to get 470 MB of archives. After this operation, 837 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:4 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:7 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:10 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:11 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:12 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:13 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:25 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:29 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:39 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u1 [210 kB] Get:40 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get:42 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:64 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get:65 http://deb.debian.org/debian buster/main amd64 x11-utils amd64 7.7+4 [202 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-glx amd64 18.3.6-2+deb10u1 [47.4 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get:78 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:82 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:83 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:86 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:88 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:89 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:90 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1+deb10u1 [210 kB] Get:91 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:94 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:95 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:96 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:97 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:98 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:102 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:103 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:104 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:105 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:106 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:107 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:114 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:115 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:116 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:117 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:118 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+deb10u1 [308 kB] Get:121 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:125 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:126 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:127 http://deb.debian.org/debian buster/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:130 http://deb.debian.org/debian buster/main amd64 libtext-iconv-perl amd64 1.7-5+b7 [15.4 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-xs-perl amd64 0.04-5+b1 [11.8 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libfile-fcntllock-perl amd64 0.22-3+b5 [35.4 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libnet-dbus-perl amd64 1.1.0-5+b1 [181 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:135 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:136 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libhttp-daemon-perl all 6.01-3 [16.6 kB] Get:142 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:143 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:144 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:146 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:147 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libapparmor1 amd64 2.13.2-10 [94.7 kB] Get:152 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get:153 http://deb.debian.org/debian buster/main amd64 dbus amd64 1.12.20-0+deb10u1 [236 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libxml-twig-perl all 1:3.50-1.1 [179 kB] Get:155 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:157 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:158 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:159 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:160 http://deb.debian.org/debian buster/main amd64 libncurses5-dev amd64 6.1+20181013-2+deb10u2 [948 B] Get:161 http://deb.debian.org/debian buster/main amd64 libtinfo-dev amd64 6.1+20181013-2+deb10u2 [940 B] Get:162 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get:163 http://deb.debian.org/debian buster/main amd64 libncurses5 amd64 6.1+20181013-2+deb10u2 [96.2 kB] Get:164 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:166 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:167 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:168 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get:169 http://deb.debian.org/debian buster/main amd64 r-cran-memoise all 1.1.0-2 [38.6 kB] Get:170 http://deb.debian.org/debian buster/main amd64 r-bioc-biocgenerics all 0.28.0-2 [644 kB] Get:171 http://deb.debian.org/debian buster/main amd64 r-bioc-iranges amd64 2.16.0-1 [2130 kB] Get:172 http://deb.debian.org/debian buster/main amd64 r-cran-bitops amd64 1.0-6-4 [24.3 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:174 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:177 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:178 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:182 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:184 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:185 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:186 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicfeatures all 1.34.3+dfsg-1 [1559 kB] Get:187 http://deb.debian.org/debian buster/main amd64 r-cran-snow all 1:0.4.3-1 [108 kB] Get:188 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicranges amd64 1.34.0+dfsg-1 [1769 kB] Get:189 http://deb.debian.org/debian buster/main amd64 r-cran-lambda.r all 1.2.3-2 [117 kB] Get:190 http://deb.debian.org/debian buster/main amd64 r-cran-cluster amd64 2.0.7-1-1+b3 [531 kB] Get:191 http://deb.debian.org/debian buster/main amd64 r-cran-rsqlite amd64 2.1.1-2+b1 [858 kB] Get:192 http://deb.debian.org/debian buster/main amd64 r-bioc-genomicalignments amd64 1.18.1-1 [2102 kB] Get:193 http://deb.debian.org/debian buster/main amd64 r-cran-rcurl amd64 1.95-4.11-1 [715 kB] Get:194 http://deb.debian.org/debian buster/main amd64 r-cran-survival amd64 2.43-3-1 [4637 kB] Get:195 http://deb.debian.org/debian buster/main amd64 r-cran-futile.logger all 1.4.3-3 [102 kB] Get:196 http://deb.debian.org/debian buster/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get:197 http://deb.debian.org/debian buster/main amd64 r-bioc-annotationdbi all 1.44.0-1 [4629 kB] Get:198 http://deb.debian.org/debian buster/main amd64 r-bioc-rsamtools amd64 1.34.1-1 [3531 kB] Get:199 http://deb.debian.org/debian buster/main amd64 r-bioc-rtracklayer amd64 1.42.1-2 [2440 kB] Get:200 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get:201 http://deb.debian.org/debian buster/main amd64 r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:202 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:203 http://deb.debian.org/debian buster/main amd64 r-bioc-biostrings amd64 2.50.2-1 [14.1 MB] Get:204 http://deb.debian.org/debian buster/main amd64 r-cran-spatial amd64 7.3-11-2+b2 [127 kB] Get:205 http://deb.debian.org/debian buster/main amd64 r-cran-rpart amd64 4.1-13-1+b1 [890 kB] Get:206 http://deb.debian.org/debian buster/main amd64 r-cran-dbi all 1.0.0-2 [789 kB] Get:207 http://deb.debian.org/debian buster/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get:208 http://deb.debian.org/debian buster/main amd64 r-bioc-biobase amd64 2.42.0-1 [2216 kB] Get:209 http://deb.debian.org/debian buster/main amd64 r-bioc-bsgenome all 1.50.0-1 [6995 kB] Get:210 http://deb.debian.org/debian buster/main amd64 r-cran-nnet amd64 7.3-12-2+b2 [111 kB] Get:211 http://deb.debian.org/debian buster/main amd64 r-cran-kernsmooth amd64 2.23-15-3+b4 [90.6 kB] Get:212 http://deb.debian.org/debian buster/main amd64 r-bioc-biomart all 2.38.0+dfsg-1 [261 kB] Get:213 http://deb.debian.org/debian buster/main amd64 r-cran-class amd64 7.3-15-1 [86.6 kB] Get:214 http://deb.debian.org/debian buster/main amd64 r-bioc-xvector amd64 0.22.0-1 [603 kB] Get:215 http://deb.debian.org/debian buster/main amd64 r-cran-foreign amd64 0.8.71-1 [245 kB] Get:216 http://deb.debian.org/debian buster/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get:217 http://deb.debian.org/debian buster/main amd64 r-bioc-variantannotation amd64 1.28.10-1 [2995 kB] Get:218 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get:219 http://deb.debian.org/debian buster/main amd64 r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1886 kB] Get:220 http://deb.debian.org/debian buster/main amd64 r-bioc-genomeinfodb all 1.18.1-1 [3692 kB] Get:221 http://deb.debian.org/debian buster/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get:222 http://deb.debian.org/debian buster/main amd64 r-bioc-biocparallel amd64 1.16.6-1 [1063 kB] Get:223 http://deb.debian.org/debian buster/main amd64 r-cran-codetools all 0.2-16-1 [90.1 kB] Get:224 http://deb.debian.org/debian buster/main amd64 r-cran-xml amd64 3.98-1.17-1 [1947 kB] Get:225 http://deb.debian.org/debian buster/main amd64 r-cran-boot all 1.3-20-2 [619 kB] Get:226 http://deb.debian.org/debian buster/main amd64 r-bioc-s4vectors amd64 0.20.1-2 [1815 kB] Get:227 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:228 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:229 http://deb.debian.org/debian buster/main amd64 r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB] Get:230 http://deb.debian.org/debian buster/main amd64 r-cran-matrixstats amd64 0.54.0-1 [618 kB] Get:231 http://deb.debian.org/debian buster/main amd64 r-cran-formatr all 1.5-3 [149 kB] Get:232 http://deb.debian.org/debian buster/main amd64 r-bioc-delayedarray amd64 0.8.0+dfsg-2 [1286 kB] Get:233 http://deb.debian.org/debian buster/main amd64 libblas-dev amd64 3.8.0-2 [154 kB] Get:234 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:235 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:236 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:237 http://deb.debian.org/debian buster/main amd64 liblapack-dev amd64 3.8.0-2 [2140 kB] Get:238 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:239 http://deb.debian.org/debian buster/main amd64 r-bioc-zlibbioc all 1.28.0+dfsg-1 [8540 B] Get:240 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:241 http://deb.debian.org/debian buster/main amd64 r-cran-bit amd64 1.1-14-1+b1 [221 kB] Get:242 http://deb.debian.org/debian buster/main amd64 r-cran-bit64 amd64 0.9-7-3 [438 kB] Get:243 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:244 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:245 http://deb.debian.org/debian buster/main amd64 r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get:246 http://deb.debian.org/debian buster/main amd64 r-cran-blob all 1.1.1-2 [25.0 kB] Get:247 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get:248 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:249 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get:250 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get:251 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:252 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get:253 http://deb.debian.org/debian buster/main amd64 r-cran-hms all 0.4.2-2 [59.1 kB] Get:254 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get:255 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get:256 http://deb.debian.org/debian buster/main amd64 r-cran-progress all 1.2.0-1 [80.3 kB] Get:257 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get:258 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get:259 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get:260 http://deb.debian.org/debian buster/main amd64 r-cran-curl amd64 3.3+dfsg-1 [128 kB] Get:261 http://deb.debian.org/debian buster/main amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get:262 http://deb.debian.org/debian buster/main amd64 r-cran-mime amd64 0.6-1 [35.1 kB] Get:263 http://deb.debian.org/debian buster/main amd64 r-cran-sys amd64 2.1-1 [58.7 kB] Get:264 http://deb.debian.org/debian buster/main amd64 r-cran-askpass amd64 1.1-1 [21.9 kB] Get:265 http://deb.debian.org/debian buster/main amd64 r-cran-openssl amd64 1.2.2+dfsg-1 [347 kB] Get:266 http://deb.debian.org/debian buster/main amd64 r-cran-httr all 1.4.0-3 [464 kB] Get:267 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:268 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:269 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:270 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:271 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:272 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get:273 http://deb.debian.org/debian buster/main amd64 libpng-tools amd64 1.6.36-6 [140 kB] Get:274 http://deb.debian.org/debian buster/main amd64 libpng-dev amd64 1.6.36-6 [300 kB] Get:275 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:276 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:277 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:278 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:279 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:280 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:281 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:282 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:283 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:284 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get:285 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:286 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:287 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:288 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:289 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:290 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:291 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:292 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:293 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:294 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:295 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:296 http://deb.debian.org/debian buster/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Get:297 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:298 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:299 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:300 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:301 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:302 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:303 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:304 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:305 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:306 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:307 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:308 http://deb.debian.org/debian buster/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:309 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:310 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:311 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:312 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:313 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:314 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:315 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:316 http://deb.debian.org/debian buster/main amd64 krb5-locales all 1.17-3+deb10u4 [95.6 kB] Get:317 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:318 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:319 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get:320 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:321 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:322 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:323 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get:324 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:325 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get:326 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:327 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:328 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:329 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:330 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:331 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:332 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:333 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:334 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:335 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:336 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:337 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:338 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:339 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:340 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:341 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:342 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:343 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:344 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:345 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:346 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:347 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:348 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:349 http://deb.debian.org/debian buster/main amd64 make amd64 4.2.1-1.2 [341 kB] Get:350 http://deb.debian.org/debian buster/main amd64 dpkg-dev all 1.19.8 [1776 kB] Get:351 http://deb.debian.org/debian buster/main amd64 libdpkg-perl all 1.19.8 [1415 kB] Get:352 http://deb.debian.org/debian buster/main amd64 patch amd64 2.7.6-3+deb10u1 [126 kB] Get:353 http://deb.debian.org/debian buster/main amd64 build-essential amd64 12.6 [7576 B] Get:354 http://deb.debian.org/debian buster/main amd64 bzip2-doc all 1.0.6-9.2~deb10u1 [493 kB] Get:355 http://deb.debian.org/debian buster/main amd64 cdbs all 0.4.159 [83.7 kB] Get:356 http://deb.debian.org/debian buster/main amd64 gnupg-l10n all 2.2.12-1+deb10u2 [1009 kB] Get:357 http://deb.debian.org/debian buster/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:358 http://deb.debian.org/debian buster/main amd64 dirmngr amd64 2.2.12-1+deb10u2 [712 kB] Get:359 http://deb.debian.org/debian buster/main amd64 gnupg all 2.2.12-1+deb10u2 [715 kB] Get:360 http://deb.debian.org/debian buster/main amd64 gnupg-agent all 2.2.12-1+deb10u2 [393 kB] Get:361 http://deb.debian.org/debian buster/main amd64 gpgconf amd64 2.2.12-1+deb10u2 [510 kB] Get:362 http://deb.debian.org/debian buster/main amd64 pinentry-curses amd64 1.1.0-2 [64.5 kB] Get:363 http://deb.debian.org/debian buster/main amd64 libnpth0 amd64 1.6-1 [18.4 kB] Get:364 http://deb.debian.org/debian buster/main amd64 gpg-agent amd64 2.2.12-1+deb10u2 [617 kB] Get:365 http://deb.debian.org/debian buster/main amd64 gnupg-utils amd64 2.2.12-1+deb10u2 [861 kB] Get:366 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:367 http://deb.debian.org/debian buster/main amd64 gpg amd64 2.2.12-1+deb10u2 [865 kB] Get:368 http://deb.debian.org/debian buster/main amd64 gpg-wks-client amd64 2.2.12-1+deb10u2 [485 kB] Get:369 http://deb.debian.org/debian buster/main amd64 gpg-wks-server amd64 2.2.12-1+deb10u2 [478 kB] Get:370 http://deb.debian.org/debian buster/main amd64 gpgsm amd64 2.2.12-1+deb10u2 [604 kB] Get:371 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:372 http://deb.debian.org/debian buster/main amd64 libfakeroot amd64 1.23-1 [45.9 kB] Get:373 http://deb.debian.org/debian buster/main amd64 fakeroot amd64 1.23-1 [85.8 kB] Get:374 http://deb.debian.org/debian buster/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB] Get:375 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:376 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:377 http://deb.debian.org/debian buster/main amd64 gcc-7-base amd64 7.4.0-6 [190 kB] Get:378 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get:379 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get:380 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get:381 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:382 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:383 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:384 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get:385 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u3 [9183 kB] Get:386 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u3 [189 kB] Get:387 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:388 http://deb.debian.org/debian buster/main amd64 javascript-common all 11 [6120 B] Get:389 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get:390 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get:391 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:392 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:393 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:394 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:395 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:396 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:397 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:398 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:399 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:400 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:401 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:402 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:403 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get:404 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get:405 http://deb.debian.org/debian buster/main amd64 libcaf-openmpi-3 amd64 2.4.0-2 [35.6 kB] Get:406 http://deb.debian.org/debian buster/main amd64 libcilkrts5 amd64 7.4.0-6 [42.2 kB] Get:407 http://deb.debian.org/debian buster/main amd64 libcoarrays-dev amd64 2.4.0-2 [29.1 kB] Get:408 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:409 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get:410 http://deb.debian.org/debian buster/main amd64 libcoarrays-openmpi-dev amd64 2.4.0-2 [35.2 kB] Get:411 http://deb.debian.org/debian buster/main amd64 libdata-dump-perl all 1.23-1 [29.5 kB] Get:412 http://deb.debian.org/debian buster/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:413 http://deb.debian.org/debian buster/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:414 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get:415 http://deb.debian.org/debian buster/main amd64 libfile-mimeinfo-perl all 0.29-1 [46.5 kB] Get:416 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get:417 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:418 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:419 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get:420 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get:421 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get:422 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get:423 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get:424 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get:425 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:426 http://deb.debian.org/debian buster/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:427 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get:428 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:429 http://deb.debian.org/debian buster/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:430 http://deb.debian.org/debian buster/main amd64 libjs-es5-shim all 4.5.12-1 [42.6 kB] Get:431 http://deb.debian.org/debian buster/main amd64 libjs-highlight.js all 9.12.0+dfsg1-4+deb10u1 [300 kB] Get:432 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:433 http://deb.debian.org/debian buster/main amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB] Get:434 http://deb.debian.org/debian buster/main amd64 libjs-sifter.js all 0.5.3+dfsg-1 [11.9 kB] Get:435 http://deb.debian.org/debian buster/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1 [3430 B] Get:436 http://deb.debian.org/debian buster/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1 [51.9 kB] Get:437 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:438 http://deb.debian.org/debian buster/main amd64 libjs-json all 0~20180723-2 [29.3 kB] Get:439 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:440 http://deb.debian.org/debian buster/main amd64 libjs-modernizr all 2.6.2+ds1-3 [46.7 kB] Get:441 http://deb.debian.org/debian buster/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:442 http://deb.debian.org/debian buster/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [32.0 kB] Get:443 http://deb.debian.org/debian buster/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:444 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get:445 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get:446 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get:447 http://deb.debian.org/debian buster/main amd64 libqhull7 amd64 2015.2-4 [196 kB] Get:448 http://deb.debian.org/debian buster/main amd64 libsasl2-modules amd64 2.1.27+dfsg-1+deb10u2 [104 kB] Get:449 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get:450 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get:451 http://deb.debian.org/debian buster/main amd64 libubsan0 amd64 7.4.0-6 [124 kB] Get:452 http://deb.debian.org/debian buster/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get:453 http://deb.debian.org/debian buster/main amd64 libxcursor1 amd64 1:1.1.15-2 [36.6 kB] Get:454 http://deb.debian.org/debian buster/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get:455 http://deb.debian.org/debian buster/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:456 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:457 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:458 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:459 http://deb.debian.org/debian buster/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get:460 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:461 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get:462 http://deb.debian.org/debian buster/main amd64 node-highlight.js all 9.12.0+dfsg1-4+deb10u1 [237 kB] Get:463 http://deb.debian.org/debian buster/main amd64 nodejs-doc all 10.24.0~dfsg-1~deb10u1 [974 kB] Get:464 http://deb.debian.org/debian buster/main amd64 pandoc-data all 2.2.1-3 [329 kB] Get:465 http://deb.debian.org/debian buster/main amd64 pandoc amd64 2.2.1-3+b2 [14.7 MB] Get:466 http://deb.debian.org/debian buster/main amd64 publicsuffix all 20220811.1734-0+deb10u1 [127 kB] Get:467 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] Get:468 http://deb.debian.org/debian buster/main amd64 r-base-dev all 3.5.2-1 [4480 B] Get:469 http://deb.debian.org/debian buster/main amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get:470 http://deb.debian.org/debian buster/main amd64 r-bioc-annotate all 1.60.0+dfsg-1 [2102 kB] Get:471 http://deb.debian.org/debian buster/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get:472 http://deb.debian.org/debian buster/main amd64 r-bioc-annotationfilter all 1.6.0+dfsg-1 [192 kB] Get:473 http://deb.debian.org/debian buster/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get:474 http://deb.debian.org/debian buster/main amd64 r-cran-colorspace amd64 1.4-0+dfsg-1 [1580 kB] Get:475 http://deb.debian.org/debian buster/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get:476 http://deb.debian.org/debian buster/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get:477 http://deb.debian.org/debian buster/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get:478 http://deb.debian.org/debian buster/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get:479 http://deb.debian.org/debian buster/main amd64 r-cran-formula all 1.2-3-2 [178 kB] Get:480 http://deb.debian.org/debian buster/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get:481 http://deb.debian.org/debian buster/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get:482 http://deb.debian.org/debian buster/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get:483 http://deb.debian.org/debian buster/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get:484 http://deb.debian.org/debian buster/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get:485 http://deb.debian.org/debian buster/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get:486 http://deb.debian.org/debian buster/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get:487 http://deb.debian.org/debian buster/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get:488 http://deb.debian.org/debian buster/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get:489 http://deb.debian.org/debian buster/main amd64 r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get:490 http://deb.debian.org/debian buster/main amd64 r-cran-latticeextra amd64 0.6-28-2+b2 [2182 kB] Get:491 http://deb.debian.org/debian buster/main amd64 r-cran-acepack amd64 1.4.1-2+b4 [59.8 kB] Get:492 http://deb.debian.org/debian buster/main amd64 r-cran-gridextra all 2.3-2 [1023 kB] Get:493 http://deb.debian.org/debian buster/main amd64 r-cran-data.table amd64 1.12.0+dfsg-1 [1359 kB] Get:494 http://deb.debian.org/debian buster/main amd64 r-cran-evaluate all 0.13-1 [78.5 kB] Get:495 http://deb.debian.org/debian buster/main amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB] Get:496 http://deb.debian.org/debian buster/main amd64 r-cran-markdown amd64 0.9+dfsg-1 [126 kB] Get:497 http://deb.debian.org/debian buster/main amd64 r-cran-yaml amd64 2.2.0-1 [101 kB] Get:498 http://deb.debian.org/debian buster/main amd64 r-cran-xfun all 0.4-1 [145 kB] Get:499 http://deb.debian.org/debian buster/main amd64 r-cran-knitr all 1.21+dfsg-2 [855 kB] Get:500 http://deb.debian.org/debian buster/main amd64 r-cran-backports amd64 1.1.3-1 [55.6 kB] Get:501 http://deb.debian.org/debian buster/main amd64 r-cran-checkmate amd64 1.9.1-1 [595 kB] Get:502 http://deb.debian.org/debian buster/main amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB] Get:503 http://deb.debian.org/debian buster/main amd64 r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB] Get:504 http://deb.debian.org/debian buster/main amd64 r-cran-rstudioapi all 0.9.0-1 [168 kB] Get:505 http://deb.debian.org/debian buster/main amd64 r-cran-bindr all 0.1.1-2 [18.1 kB] Get:506 http://deb.debian.org/debian buster/main amd64 r-cran-bindrcpp amd64 0.2.2-2 [71.4 kB] Get:507 http://deb.debian.org/debian buster/main amd64 r-cran-purrr amd64 0.3.0-1 [384 kB] Get:508 http://deb.debian.org/debian buster/main amd64 r-cran-tidyselect amd64 0.2.5-1 [117 kB] Get:509 http://deb.debian.org/debian buster/main amd64 r-cran-dplyr amd64 0.7.8-1 [1693 kB] Get:510 http://deb.debian.org/debian buster/main amd64 r-cran-tidyr amd64 0.8.2-1 [421 kB] Get:511 http://deb.debian.org/debian buster/main amd64 r-cran-htmltable all 1.13.1-1 [303 kB] Get:512 http://deb.debian.org/debian buster/main amd64 r-cran-viridis all 0.5.1-2 [1846 kB] Get:513 http://deb.debian.org/debian buster/main amd64 r-cran-base64enc amd64 0.1-3-2 [27.7 kB] Get:514 http://deb.debian.org/debian buster/main amd64 r-cran-chron amd64 2.3-53-1 [193 kB] Get:515 http://deb.debian.org/debian buster/main amd64 r-cran-hmisc amd64 4.2-0-1 [3035 kB] Get:516 http://deb.debian.org/debian buster/main amd64 r-cran-dichromat all 1:2.0-0-2 [148 kB] Get:517 http://deb.debian.org/debian buster/main amd64 r-bioc-protgenerics all 1.14.0-1 [30.6 kB] Get:518 http://deb.debian.org/debian buster/main amd64 r-bioc-ensembldb all 2.6.5+dfsg-1 [1448 kB] Get:519 http://deb.debian.org/debian buster/main amd64 r-bioc-biovizbase amd64 1.30.1-1 [2776 kB] Get:520 http://deb.debian.org/debian buster/main amd64 r-bioc-genefilter amd64 1.64.0-1 [1692 kB] Get:521 http://deb.debian.org/debian buster/main amd64 r-bioc-go.db all 3.7.0-1 [16.1 MB] Get:522 http://deb.debian.org/debian buster/main amd64 r-cran-hwriter all 1.3.2-3 [162 kB] Get:523 http://deb.debian.org/debian buster/main amd64 r-bioc-shortread amd64 1.40.0-1 [5023 kB] Get:524 http://deb.debian.org/debian buster/main amd64 r-bioc-snpstats amd64 1.32.0+dfsg-1 [7410 kB] Get:525 http://deb.debian.org/debian buster/main amd64 r-cran-abind all 1.4-5-1.2 [64.3 kB] Get:526 http://deb.debian.org/debian buster/main amd64 r-cran-base64url amd64 1.4-1 [26.1 kB] Get:527 http://deb.debian.org/debian buster/main amd64 r-cran-bbmisc amd64 1.11-3 [311 kB] Get:528 http://deb.debian.org/debian buster/main amd64 r-cran-brew all 1.0-6-3 [70.1 kB] Get:529 http://deb.debian.org/debian buster/main amd64 r-cran-sendmailr all 1.2-1-4 [39.1 kB] Get:530 http://deb.debian.org/debian buster/main amd64 r-cran-batchjobs all 1.7-2 [494 kB] Get:531 http://deb.debian.org/debian buster/main amd64 r-cran-fs amd64 1.2.6+dfsg-1 [230 kB] Get:532 http://deb.debian.org/debian buster/main amd64 r-cran-rappdirs amd64 0.3.1-1+b1 [95.1 kB] Get:533 http://deb.debian.org/debian buster/main amd64 r-cran-batchtools amd64 0.9.11-2 [1029 kB] Get:534 http://deb.debian.org/debian buster/main amd64 r-cran-iterators all 1.0.10-1 [330 kB] Get:535 http://deb.debian.org/debian buster/main amd64 r-cran-foreach all 1.4.4-2 [401 kB] Get:536 http://deb.debian.org/debian buster/main amd64 r-cran-modelmetrics amd64 1.2.2-1 [127 kB] Get:537 http://deb.debian.org/debian buster/main amd64 r-cran-generics all 0.0.2-2 [65.8 kB] Get:538 http://deb.debian.org/debian buster/main amd64 r-cran-gower amd64 0.1.2-2 [33.4 kB] Get:539 http://deb.debian.org/debian buster/main amd64 r-cran-numderiv all 2016.8-1-2 [115 kB] Get:540 http://deb.debian.org/debian buster/main amd64 r-cran-squarem all 2017.10-1-2 [288 kB] Get:541 http://deb.debian.org/debian buster/main amd64 r-cran-lava all 1.6.4-1 [2261 kB] Get:542 http://deb.debian.org/debian buster/main amd64 r-cran-prodlim amd64 2018.04.18-2 [395 kB] Get:543 http://deb.debian.org/debian buster/main amd64 r-cran-ipred amd64 0.9-8-1 [394 kB] Get:544 http://deb.debian.org/debian buster/main amd64 r-cran-lubridate amd64 1.7.4-2 [1028 kB] Get:545 http://deb.debian.org/debian buster/main amd64 r-cran-rcpproll amd64 0.3.0-1 [82.9 kB] Get:546 http://deb.debian.org/debian buster/main amd64 r-cran-timedate amd64 3043.102-1+b1 [1436 kB] Get:547 http://deb.debian.org/debian buster/main amd64 r-cran-recipes all 0.1.4-2 [1370 kB] Get:548 http://deb.debian.org/debian buster/main amd64 r-cran-caret amd64 6.0-81-2 [6028 kB] Get:549 http://deb.debian.org/debian buster/main amd64 r-cran-catools amd64 1.17.1.1-1 [204 kB] Get:550 http://deb.debian.org/debian buster/main amd64 r-cran-kernlab amd64 0.9-27-1 [2040 kB] Get:551 http://deb.debian.org/debian buster/main amd64 r-cran-cvst all 0.2-2-2 [85.7 kB] Get:552 http://deb.debian.org/debian buster/main amd64 r-cran-rprojroot all 1.3-2-2 [96.9 kB] Get:553 http://deb.debian.org/debian buster/main amd64 r-cran-desc all 1.2.0-2 [290 kB] Get:554 http://deb.debian.org/debian buster/main amd64 r-cran-praise all 1.0.0-3 [19.7 kB] Get:555 http://deb.debian.org/debian buster/main amd64 r-cran-testthat amd64 2.0.1-1 [954 kB] Get:556 http://deb.debian.org/debian buster/main amd64 r-cran-dbitest all 1.5-2-2 [432 kB] Get:557 http://deb.debian.org/debian buster/main amd64 r-cran-deoptimr amd64 1.0-8-1+b2 [41.3 kB] Get:558 http://deb.debian.org/debian buster/main amd64 r-cran-robustbase amd64 0.93-3-1 [3065 kB] Get:559 http://deb.debian.org/debian buster/main amd64 r-cran-sfsmisc all 1.1-3-1 [608 kB] Get:560 http://deb.debian.org/debian buster/main amd64 r-cran-magic all 1.5-9-1 [365 kB] Get:561 http://deb.debian.org/debian buster/main amd64 r-cran-geometry amd64 0.3-6+dfsg-2 [250 kB] Get:562 http://deb.debian.org/debian buster/main amd64 r-cran-ddalpha amd64 1.3.8-1 [1166 kB] Get:563 http://deb.debian.org/debian buster/main amd64 r-cran-drr all 0.0.3-2 [144 kB] Get:564 http://deb.debian.org/debian buster/main amd64 r-cran-dimred amd64 0.2.2-1 [1271 kB] Get:565 http://deb.debian.org/debian buster/main amd64 r-cran-multicore amd64 0.2-1+b2 [22.5 kB] Get:566 http://deb.debian.org/debian buster/main amd64 r-cran-domc all 1.3.5-2 [163 kB] Get:567 http://deb.debian.org/debian buster/main amd64 r-cran-doparallel all 1.0.14-1 [198 kB] Get:568 http://deb.debian.org/debian buster/main amd64 r-cran-e1071 amd64 1.7-0.1-1 [796 kB] Get:569 http://deb.debian.org/debian buster/main amd64 r-cran-plotrix all 3.7-4-1 [1037 kB] Get:570 http://deb.debian.org/debian buster/main amd64 r-cran-teachingdemos all 2.10-3 [2052 kB] Get:571 http://deb.debian.org/debian buster/main amd64 r-cran-plotmo all 3.5.2-1 [1467 kB] Get:572 http://deb.debian.org/debian buster/main amd64 r-cran-earth amd64 4.7.0-1 [1751 kB] Get:573 http://deb.debian.org/debian buster/main amd64 r-cran-fastica amd64 1.2-1-1+b2 [41.6 kB] Get:574 http://deb.debian.org/debian buster/main amd64 r-cran-fastmatch amd64 1.1-0-2 [32.4 kB] Get:575 http://deb.debian.org/debian buster/main amd64 r-cran-filehash amd64 2.4-1-3 [305 kB] Get:576 http://deb.debian.org/debian buster/main amd64 r-cran-gtools amd64 3.8.1-1 [321 kB] Get:577 http://deb.debian.org/debian buster/main amd64 r-cran-gdata all 2.18.0-2 [1029 kB] Get:578 http://deb.debian.org/debian buster/main amd64 r-cran-gplots all 3.0.1.1-1 [661 kB] Get:579 http://deb.debian.org/debian buster/main amd64 r-cran-hexbin amd64 1.27.2-2+b1 [826 kB] Get:580 http://deb.debian.org/debian buster/main amd64 r-cran-later amd64 0.7.5+dfsg-2 [71.1 kB] Get:581 http://deb.debian.org/debian buster/main amd64 r-cran-promises amd64 1.0.1-2 [161 kB] Get:582 http://deb.debian.org/debian buster/main amd64 r-cran-httpuv amd64 1.4.5.1+dfsg-1 [292 kB] Get:583 http://deb.debian.org/debian buster/main amd64 r-cran-maps amd64 3.3.0-2 [2243 kB] Get:584 http://deb.debian.org/debian buster/main amd64 r-cran-mapproj amd64 1.2.6-2 [53.7 kB] Get:585 http://deb.debian.org/debian buster/main amd64 r-cran-mda amd64 0.4-10-2 [330 kB] Get:586 http://deb.debian.org/debian buster/main amd64 r-cran-mlbench amd64 2.1-1-3 [1046 kB] Get:587 http://deb.debian.org/debian buster/main amd64 r-cran-rocr all 1.0-7-4 [211 kB] Get:588 http://deb.debian.org/debian buster/main amd64 r-cran-mlmetrics all 1.1.1-2 [70.6 kB] Get:589 http://deb.debian.org/debian buster/main amd64 r-cran-mockery all 0.4.1.1+dfsg-1 [39.1 kB] Get:590 http://deb.debian.org/debian buster/main amd64 r-cran-mockr all 0.1-2 [23.7 kB] Get:591 http://deb.debian.org/debian buster/main amd64 r-cran-pls all 2.7-0-1 [1218 kB] Get:592 http://deb.debian.org/debian buster/main amd64 r-cran-png amd64 0.1-7-3 [40.4 kB] Get:593 http://deb.debian.org/debian buster/main amd64 r-cran-tinytex all 0.10-1 [89.6 kB] Get:594 http://deb.debian.org/debian buster/main amd64 r-cran-sourcetools amd64 0.1.7-2 [45.2 kB] Get:595 http://deb.debian.org/debian buster/main amd64 r-cran-shiny all 1.2.0+dfsg-1 [3013 kB] Get:596 http://deb.debian.org/debian buster/main amd64 r-cran-rmarkdown all 1.11+dfsg-1 [2271 kB] Get:597 http://deb.debian.org/debian buster/main amd64 r-cran-rmpi amd64 0.6-9-1 [265 kB] Get:598 http://deb.debian.org/debian buster/main amd64 r-cran-runit all 0.4.32-2 [293 kB] Get:599 http://deb.debian.org/debian buster/main amd64 r-cran-sp amd64 1:1.3-1-1 [1822 kB] Get:600 http://deb.debian.org/debian buster/main amd64 r-cran-testit all 0.9-1 [32.2 kB] Get:601 http://deb.debian.org/debian buster/main amd64 r-cran-tikzdevice amd64 0.12-1 [1074 kB] Get:602 http://deb.debian.org/debian buster/main amd64 r-cran-webutils amd64 0.6-2 [47.0 kB] Get:603 http://deb.debian.org/debian buster/main amd64 r-cran-xml2 amd64 1.2.0-3 [338 kB] Get:604 http://deb.debian.org/debian buster/main amd64 r-doc-html all 3.5.2-1 [563 kB] Get:605 http://deb.debian.org/debian buster/main amd64 r-recommended all 3.5.2-1 [2772 B] Get:606 http://deb.debian.org/debian buster/main amd64 rename all 1.10-1 [17.2 kB] Get:607 http://deb.debian.org/debian buster/main amd64 x11-xserver-utils amd64 7.7+8 [168 kB] Get:608 http://deb.debian.org/debian buster/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:609 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 470 MB in 4s (112 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23565 files and directories currently installed.) Preparing to unpack .../base-files_10.3+deb10u13_amd64.deb ... Unpacking base-files (10.3+deb10u13) over (9.9+deb9u13) ... Setting up base-files (10.3+deb10u13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23566 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.28-10+deb10u1_amd64.deb ... Unpacking libc6-dev:amd64 (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../libc-dev-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-dev-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../linux-libc-dev_4.19.249-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.19.249-2) over (4.9.228-1) ... Preparing to unpack .../libc6_2.28-10+deb10u1_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc6:amd64 (2.28-10+deb10u1) ... Installing new version of config file /etc/ld.so.conf.d/x86_64-linux-gnu.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23705 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc-bin (2.28-10+deb10u1) ... Updating /etc/nsswitch.conf to current default. Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23705 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.3.0-6_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-6) ... Setting up gcc-8-base:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23711 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.3.0-6_amd64.deb ... Unpacking libgcc1:amd64 (1:8.3.0-6) over (1:6.3.0-18+deb9u1) ... Setting up libgcc1:amd64 (1:8.3.0-6) ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23711 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23721 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6.1_amd64.deb ... Unpacking debianutils (4.8.6.1) over (4.8.1.1) ... Setting up debianutils (4.8.6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23721 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-4_amd64.deb ... Unpacking bash (5.0-4) over (4.4-5) ... Setting up bash (5.0-4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23722 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.33.1-0.1_amd64.deb ... Unpacking bsdutils (1:2.33.1-0.1) over (1:2.29.2-1+deb9u1) ... Setting up bsdutils (1:2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23722 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3_amd64.deb ... Unpacking coreutils (8.30-3) over (8.26-3) ... Setting up coreutils (8.30-3) ... Selecting previously unselected package libzstd1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23722 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3+deb10u2_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23728 files and directories currently installed.) Preparing to unpack .../libnettle6_3.4.1-1+deb10u1_amd64.deb ... Unpacking libnettle6:amd64 (3.4.1-1+deb10u1) over (3.3-1+b2) ... Setting up libnettle6:amd64 (3.4.1-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23729 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.4.1-1+deb10u1_amd64.deb ... Unpacking libhogweed4:amd64 (3.4.1-1+deb10u1) over (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23729 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-4+deb10u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) over (2:6.1.2+dfsg-1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23729 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23735 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) over (0.16-1+deb9u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23760 files and directories currently installed.) Preparing to unpack .../libffi6_3.2.1-9_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-9) over (3.2.1-6) ... Setting up libffi6:amd64 (3.2.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23760 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.15-2+deb10u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.15-2+deb10u1) over (0.23.3-2) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23760 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3) over (4.10-1.1+deb9u1) ... Setting up libtasn1-6:amd64 (4.13-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23761 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-4_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.3-4) ... Setting up libseccomp2:amd64 (2.3.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23767 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2019.1+deb10u1_all.deb ... Unpacking debian-archive-keyring (2019.1+deb10u1) over (2017.5+deb9u1) ... Setting up debian-archive-keyring (2019.1+deb10u1) ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23776 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.4-3_all.deb ... Unpacking libaudit-common (1:2.8.4-3) over (1:2.6.7-2) ... Setting up libaudit-common (1:2.8.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23776 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2) over (0.7.7-3+b1) ... Setting up libcap-ng0:amd64 (0.7.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23775 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.4-3_amd64.deb ... Unpacking libaudit1:amd64 (1:2.8.4-3) over (1:2.6.7-2) ... Setting up libaudit1:amd64 (1:2.8.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23775 files and directories currently installed.) Preparing to unpack .../debconf_1.5.71+deb10u1_all.deb ... Unpacking debconf (1.5.71+deb10u1) over (1.5.61) ... Setting up debconf (1.5.71+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23756 files and directories currently installed.) Preparing to unpack .../libpam0g_1.3.1-5_amd64.deb ... Unpacking libpam0g:amd64 (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam0g:amd64 (1.3.1-5) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23756 files and directories currently installed.) Preparing to unpack .../0-libpcre3-dev_2%3a8.39-12_amd64.deb ... Unpacking libpcre3-dev:amd64 (2:8.39-12) over (2:8.39-3) ... Preparing to unpack .../1-libpcre16-3_2%3a8.39-12_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.39-12) over (2:8.39-3) ... Preparing to unpack .../2-libpcre32-3_2%3a8.39-12_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.39-12) over (2:8.39-3) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../3-libdrm-common_2.4.97-1_all.deb ... Unpacking libdrm-common (2.4.97-1) ... Preparing to unpack .../4-libdrm2_2.4.97-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.97-1) over (2.4.74-1) ... Preparing to unpack .../5-libdrm-amdgpu1_2.4.97-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.97-1) over (2.4.74-1) ... Preparing to unpack .../6-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) over (0.8.3-1) ... Preparing to unpack .../7-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) over (3.1-20160903-3) ... Preparing to unpack .../8-zlib1g-dev_1%3a1.2.11.dfsg-1+deb10u1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) over (1:1.2.8.dfsg-5) ... Preparing to unpack .../9-zlib1g_1%3a1.2.11.dfsg-1+deb10u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Selecting previously unselected package libllvm7:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23763 files and directories currently installed.) Preparing to unpack .../libllvm7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Preparing to unpack .../libgl1-mesa-dri_18.3.6-2+deb10u1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) over (13.0.6-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23770 files and directories currently installed.) Removing libsensors4:amd64 (1:3.4.0-4) ... Selecting previously unselected package libsensors-config. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23761 files and directories currently installed.) Preparing to unpack .../00-libsensors-config_1%3a3.5.0-3_all.deb ... Unpacking libsensors-config (1:3.5.0-3) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../01-libsensors5_1%3a3.5.0-3_amd64.deb ... Unpacking libsensors5:amd64 (1:3.5.0-3) ... Preparing to unpack .../02-libpciaccess0_0.14-1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.14-1) over (0.13.4-1+b2) ... Preparing to unpack .../03-libdrm-intel1_2.4.97-1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.97-1) over (2.4.74-1) ... Preparing to unpack .../04-libdrm-nouveau2_2.4.97-1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.97-1) over (2.4.74-1) ... Preparing to unpack .../05-libdrm-radeon1_2.4.97-1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.97-1) over (2.4.74-1) ... Preparing to unpack .../06-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) over (0.168-1) ... Preparing to unpack .../07-libexpat1_2.2.6-2+deb10u4_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u4) over (2.2.0-2+deb9u3) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../08-libglvnd0_1.1.0-1_amd64.deb ... Unpacking libglvnd0:amd64 (1.1.0-1) ... Preparing to unpack .../09-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) over (1:1.0.8-1) ... Preparing to unpack .../10-libxcb1_1.13.1-2_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-2) over (1.12-1) ... Preparing to unpack .../11-libxcb-dri3-0_1.13.1-2_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.13.1-2) over (1.12-1) ... Preparing to unpack .../12-libx11-data_2%3a1.6.7-1+deb10u2_all.deb ... Unpacking libx11-data (2:1.6.7-1+deb10u2) over (2:1.6.4-3+deb9u1) ... Preparing to unpack .../13-libx11-6_2%3a1.6.7-1+deb10u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.7-1+deb10u2) over (2:1.6.4-3+deb9u1) ... Preparing to unpack .../14-libx11-xcb1_2%3a1.6.7-1+deb10u2_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) over (2:1.6.4-3+deb9u1) ... Preparing to unpack .../15-libxcb-dri2-0_1.13.1-2_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.13.1-2) over (1.12-1) ... Preparing to unpack .../16-libxcb-glx0_1.13.1-2_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.13.1-2) over (1.12-1) ... Preparing to unpack .../17-libxcb-present0_1.13.1-2_amd64.deb ... Unpacking libxcb-present0:amd64 (1.13.1-2) over (1.12-1) ... Preparing to unpack .../18-libxcb-sync1_1.13.1-2_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.13.1-2) over (1.12-1) ... Preparing to unpack .../19-libxdamage1_1%3a1.1.4-3+b3_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-3+b3) over (1:1.1.4-2+b3) ... Preparing to unpack .../20-libxshmfence1_1.3-1_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3-1) over (1.2-1+b2) ... Selecting previously unselected package libglx-mesa0:amd64. Preparing to unpack .../21-libglx-mesa0_18.3.6-2+deb10u1_amd64.deb ... Unpacking libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Preparing to unpack .../22-x11-utils_7.7+4_amd64.deb ... Unpacking x11-utils (7.7+4) over (7.7+3+b1) ... Preparing to unpack .../23-libgl1-mesa-glx_18.3.6-2+deb10u1_amd64.deb ... Unpacking libgl1-mesa-glx:amd64 (18.3.6-2+deb10u1) over (13.0.6-1+b2) ... Selecting previously unselected package libglx0:amd64. Preparing to unpack .../24-libglx0_1.1.0-1_amd64.deb ... Unpacking libglx0:amd64 (1.1.0-1) ... Selecting previously unselected package libgl1:amd64. Preparing to unpack .../25-libgl1_1.1.0-1_amd64.deb ... Unpacking libgl1:amd64 (1.1.0-1) ... Preparing to unpack .../26-libglapi-mesa_18.3.6-2+deb10u1_amd64.deb ... Unpacking libglapi-mesa:amd64 (18.3.6-2+deb10u1) over (13.0.6-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23798 files and directories currently installed.) Removing libllvm3.9:amd64 (1:3.9.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23791 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.3.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (8.3.0-6) over (6.3.0-18+deb9u1) ... Setting up libstdc++6:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23791 files and directories currently installed.) Preparing to unpack .../libpcrecpp0v5_2%3a8.39-12_amd64.deb ... Unpacking libpcrecpp0v5:amd64 (2:8.39-12) over (2:8.39-3) ... Preparing to unpack .../libpcre3_2%3a8.39-12_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-12) over (2:8.39-3) ... Setting up libpcre3:amd64 (2:8.39-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23791 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (2.8-1+b1) over (2.6-3+b3) ... Setting up libselinux1:amd64 (2.8-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23790 files and directories currently installed.) Preparing to unpack .../libsepol1_2.8-1_amd64.deb ... Unpacking libsepol1:amd64 (2.8-1) over (2.6-2) ... Setting up libsepol1:amd64 (2.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23789 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.6-2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23788 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_amd64.deb ... Unpacking libsemanage1:amd64 (2.8-2) over (2.6-2) ... Setting up libsemanage1:amd64 (2.8-2) ... (Reading database ... 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Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23787 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5_amd64.deb ... Unpacking libpam-modules-bin (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam-modules-bin (1.3.1-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23769 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1+deb10u2_amd64.deb ... Unpacking gpgv (2.2.12-1+deb10u2) over (2.1.18-8~deb9u4) ... Setting up gpgv (2.2.12-1+deb10u2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23797 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.3-1+deb10u1_amd64.deb ... Unpacking liblz4-1:amd64 (1.8.3-1+deb10u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (1.8.3-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23796 files and directories currently installed.) Preparing to unpack .../liblzma-dev_5.2.4-1+deb10u1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.2.4-1+deb10u1) over (5.2.2-1.2+b1) ... Preparing to unpack .../liblzma5_5.2.4-1+deb10u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.4-1+deb10u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.4-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23794 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u8_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23794 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u8_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libudev1:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23794 files and directories currently installed.) Preparing to unpack .../lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) over (9.20161125) ... Preparing to unpack .../tar_1.30+dfsg-6_amd64.deb ... Unpacking tar (1.30+dfsg-6) over (1.29b-1.1) ... Setting up tar (1.30+dfsg-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23792 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.19.8_amd64.deb ... Unpacking dpkg (1.19.8) over (1.18.25) ... Setting up dpkg (1.19.8) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23790 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-5_amd64.deb ... Unpacking dash (0.5.10.2-5) over (0.5.8-2.4) ... Setting up dash (0.5.10.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23791 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.7-3_amd64.deb ... Unpacking diffutils (1:3.7-3) over (1:3.5-3) ... Setting up diffutils (1:3.7-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23793 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libcomerr2:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../libcom-err2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libcom-err2:amd64 (1.44.5-1+deb10u3) ... Setting up libcom-err2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23796 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fslibs:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libext2fs2:amd64. Preparing to unpack .../libext2fs2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.5-1+deb10u3) ... Setting up libext2fs2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23799 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fsprogs (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.44.5-1+deb10u3) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23782 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20190209-2_amd64.deb ... Unpacking findutils (4.6.0+git+20190209-2) over (4.6.0+git+20161106-2) ... Setting up findutils (4.6.0+git+20190209-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23784 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_amd64.deb ... Unpacking grep (3.3-1) over (2.27-2) ... Setting up grep (3.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23784 files and directories currently installed.) Preparing to unpack .../gzip_1.9-3+deb10u1_amd64.deb ... Unpacking gzip (1.9-3+deb10u1) over (1.6-5+b1) ... Setting up gzip (1.9-3+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23783 files and directories currently installed.) Preparing to unpack .../hostname_3.21_amd64.deb ... Unpacking hostname (3.21) over (3.18+b1) ... Setting up hostname (3.21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23782 files and directories currently installed.) Preparing to unpack .../libuuid1_2.33.1-0.1_amd64.deb ... Unpacking libuuid1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libuuid1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23782 files and directories currently installed.) Preparing to unpack .../libblkid1_2.33.1-0.1_amd64.deb ... Unpacking libblkid1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libblkid1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23782 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.33.1-0.1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libsmartcols1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23782 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.33.1-0.1_amd64.deb ... Unpacking libfdisk1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libfdisk1:amd64 (2.33.1-0.1) ... Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23782 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23791 files and directories currently installed.) Preparing to unpack .../libmount1_2.33.1-0.1_amd64.deb ... Unpacking libmount1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libmount1:amd64 (2.33.1-0.1) ... (Reading database ... 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Setting up xz-utils (5.2.4-1+deb10u1) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libjs-d3 (3.5.17-2) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libpcre32-3:amd64 (2:8.39-12) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (8.3.0-6) ... Setting up patch (2.7.6-3+deb10u1) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up ucf (3.0038+nmu1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Setting up libmpx2:amd64 (8.3.0-6) ... Setting up liblzma-dev:amd64 (5.2.4-1+deb10u1) ... Setting up libubsan1:amd64 (8.3.0-6) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up libisl19:amd64 (0.20-2) ... Setting up libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libcilkrts5:amd64 (7.4.0-6) ... Setting up xml-core (0.18+nmu1) ... Setting up libubsan0:amd64 (7.4.0-6) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up netbase (5.6) ... Installing new version of config file /etc/services ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up pandoc-data (2.2.1-3) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up libbinutils:amd64 (2.31.1-16) ... Setting up cpp-8 (8.3.0-6) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up cdbs (0.4.159) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up readline-common (7.0-5) ... Setting up publicsuffix (20220811.1734-0+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libcc1-0:amd64 (8.3.0-6) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up liblsan0:amd64 (8.3.0-6) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libitm1:amd64 (8.3.0-6) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up gnupg-utils (2.2.12-1+deb10u2) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up pinentry-curses (1.1.0-2) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libpaper1:amd64 (1.1.28) ... Setting up manpages-dev (4.16-2) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libpng-tools (1.6.36-6) ... Setting up fontconfig-config (2.13.1-2) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up m4 (1.4.18-2) ... Setting up binutils (2.31.1-16) ... Setting up libpaper-utils (1.1.28) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libjs-jquery-datatables (1.10.19+dfsg-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up pandoc (2.2.1-3+b2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up shared-mime-info (1.10-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up xauth (1:1.0.10-1) ... Setting up cpp (4:8.3.0-1) ... Setting up gpgconf (2.2.12-1+deb10u2) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up gpg (2.2.12-1+deb10u2) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up libibverbs1:amd64 (22.1-1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gcc-8 (8.3.0-6) ... Setting up gpg-agent (2.2.12-1+deb10u2) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up libtool (2.4.6-9) ... Setting up libpcre3-dev:amd64 (2:8.39-12) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up gfortran-8 (8.3.0-6) ... Setting up gpgsm (2.2.12-1+deb10u2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing obsolete conffile /etc/drirc ... Setting up libreadline-dev:amd64 (7.0-5) ... Setting up x11-xserver-utils (7.7+8) ... Setting up nodejs (10.24.0~dfsg-1~deb10u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up gcc (4:8.3.0-1) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up dirmngr (2.2.12-1+deb10u2) ... Setting up perl (5.28.1-6+deb10u1) ... Removing obsolete conffile /etc/perl/sitecustomize.pl ... Setting up libdata-dump-perl (1.23-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up gnupg-agent (2.2.12-1+deb10u2) ... Setting up libdpkg-perl (1.19.8) ... Setting up autoconf (2.69-11) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up gpg-wks-server (2.2.12-1+deb10u2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Setting up g++-8 (8.3.0-6) ... Setting up libncurses5-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up liburi-perl (1.76-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libnet-ssleay-perl (1.85-2+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up librdmacm1:amd64 (22.1-1) ... Setting up libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up gpg-wks-client (2.2.12-1+deb10u2) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libfile-fcntllock-perl (0.22-3+b5) ... Setting up libalgorithm-diff-perl (1.19.03-2) ... Setting up libio-stringy-perl (2.111-3) ... Setting up libpng-dev:amd64 (1.6.36-6) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up libnet-http-perl (6.18-1) ... Setting up rename (1.10-1) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up gfortran (4:8.3.0-1) ... Setting up dpkg-dev (1.19.8) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up pkg-config (0.29-6) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libgl1-mesa-glx:amd64 (18.3.6-2+deb10u1) ... Setting up g++ (4:8.3.0-1) ... Setting up libhttp-daemon-perl (6.01-3) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gnupg (2.2.12-1+deb10u2) ... Setting up build-essential (12.6) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up libalgorithm-diff-xs-perl (0.04-5+b1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libfabric1 (1.6.2-3) ... Setting up libfile-mimeinfo-perl (0.29-1) ... Setting up libcoarrays-dev:amd64 (2.4.0-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up libcaf-openmpi-3:amd64 (2.4.0-2) ... Setting up icu-devtools (63.1-6+deb10u3) ... Setting up libicu-dev:amd64 (63.1-6+deb10u3) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.13) ... Setting up libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libwww-perl (6.36-2) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libxml-twig-perl (1:3.50-1.1) ... Setting up libnet-dbus-perl (1.1.0-5+b1) ... Processing triggers for sgml-base (1.29) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up x11-utils (7.7+4) ... Installing new version of config file /etc/X11/app-defaults/Editres ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up r-base-core (3.5.2-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Installing new version of config file /etc/R/Rprofile.site ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4) ... Setting up r-cran-squarem (2017.10-1-2) ... Setting up r-cran-multicore (0.2-1+b2) ... Setting up r-cran-fastmatch (1.1-0-2) ... Setting up r-cran-gtable (0.2.0-3) ... Setting up r-cran-labeling (0.3-3) ... Setting up r-cran-sourcetools (0.1.7-2) ... Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-nlme (3.1.137-1+b3) ... Setting up r-cran-pls (2.7-0-1) ... Setting up r-cran-formatr (1.5-3) ... Setting up r-cran-formula (1.2-3-2) ... Setting up r-cran-hexbin (1.27.2-2+b1) ... Setting up r-cran-xml (3.98-1.17-1) ... Setting up r-cran-viridislite (0.3.0-3) ... Setting up r-cran-cluster (2.0.7-1-1+b3) ... Setting up r-cran-nnet (7.3-12-2+b2) ... Setting up r-cran-lazyeval (0.2.1-3) ... Setting up r-cran-r6 (2.4.0-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-chron (2.3-53-1) ... Setting up r-cran-numderiv (2016.8-1-2) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-cran-testit (0.9-1) ... Setting up r-cran-rappdirs (0.3.1-1+b1) ... Setting up r-bioc-genomeinfodbdata (1.2.0-1) ... Setting up r-cran-littler (0.3.6-1) ... Setting up r-cran-filehash (2.4-1-3) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-cran-curl (3.3+dfsg-1) ... Setting up r-cran-codetools (0.2-16-1) ... Setting up r-cran-bindr (0.1.1-2) ... Setting up r-cran-boot (1.3-20-2) ... Setting up r-cran-maps (3.3.0-2) ... Setting up r-bioc-biocgenerics (0.28.0-2) ... Setting up r-cran-rlang (0.3.1-2) ... Setting up r-cran-matrixstats (0.54.0-1) ... Setting up r-base-dev (3.5.2-1) ... Setting up r-cran-assertthat (0.2.0-2) ... Setting up littler (0.3.6-1) ... Setting up r-cran-bindrcpp (0.2.2-2) ... Setting up r-cran-xfun (0.4-1) ... Setting up r-cran-sys (2.1-1) ... Setting up r-cran-deoptimr (1.0-8-1+b2) ... Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-backports (1.1.3-1) ... Setting up r-cran-mime (0.6-1) ... Setting up r-cran-praise (1.0.0-3) ... Setting up r-cran-generics (0.0.2-2) ... Setting up r-cran-base64enc (0.1-3-2) ... Setting up r-cran-iterators (1.0.10-1) ... Setting up r-cran-spatial (7.3-11-2+b2) ... Setting up r-cran-abind (1.4-5-1.2) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-sfsmisc (1.1-3-1) ... Setting up r-cran-yaml (2.2.0-1) ... Setting up r-cran-lambda.r (1.2.3-2) ... Setting up r-cran-xml2 (1.2.0-3) ... Setting up r-bioc-protgenerics (1.14.0-1) ... Setting up r-cran-gower (0.1.2-2) ... Setting up r-cran-evaluate (0.13-1) ... Setting up r-cran-dbi (1.0.0-2) ... Setting up r-cran-timedate (3043.102-1+b1) ... Setting up r-cran-highr (0.7+dfsg-1) ... Setting up r-cran-foreach (1.4.4-2) ... Setting up r-cran-prettyunits (1.0.2-3) ... Setting up r-cran-fansi (0.4.0-1) ... Setting up r-cran-mass (7.3-51.1-1) ... Setting up r-cran-sendmailr (1.2-1-4) ... Setting up r-cran-mockr (0.1-2) ... Setting up r-cran-checkmate (1.9.1-1) ... Setting up r-cran-acepack (1.4.1-2+b4) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-cran-gtools (3.8.1-1) ... Setting up r-cran-kernlab (0.9-27-1) ... Setting up r-cran-data.table (1.12.0+dfsg-1) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-foreign (0.8.71-1) ... Setting up r-cran-bit (1.1-14-1+b1) ... Setting up r-cran-xtable (1:1.8-3-1) ... Setting up r-cran-cli (1.0.1-1) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-cran-rprojroot (1.3-2-2) ... Setting up r-cran-mlbench (2.1-1-3) ... Setting up r-cran-bit64 (0.9-7-3) ... Setting up r-cran-dichromat (1:2.0-0-2) ... Setting up r-bioc-zlibbioc (1.28.0+dfsg-1) ... Setting up r-cran-askpass (1.1-1) ... Setting up r-cran-rmpi (0.6-9-1) ... Setting up r-cran-png (0.1-7-3) ... Setting up r-bioc-biobase (2.42.0-1) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up r-cran-rstudioapi (0.9.0-1) ... Setting up r-cran-pkgconfig (2.0.2-1) ... Setting up r-cran-testthat (2.0.1-1) ... Setting up r-cran-mapproj (1.2.6-2) ... Setting up r-cran-sp (1:1.3-1-1) ... Setting up r-cran-utf8 (1.1.4-1+b1) ... Setting up r-cran-brew (1.0-6-3) ... Setting up r-cran-colorspace (1.4-0+dfsg-1) ... Setting up r-cran-mockery (0.4.1.1+dfsg-1) ... Setting up r-cran-stringi (1.2.4-2) ... Setting up r-cran-hwriter (1.3.2-3) ... Setting up r-cran-markdown (0.9+dfsg-1) ... Setting up r-cran-plotrix (3.7-4-1) ... Setting up r-cran-plyr (1.8.4-2) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-bioc-s4vectors (0.20.1-2) ... Setting up r-cran-runit (0.4.32-2) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-teachingdemos (2.10-3) ... Setting up r-cran-gridextra (2.3-2) ... Setting up r-cran-hms (0.4.2-2) ... Setting up r-cran-memoise (1.1.0-2) ... Setting up r-cran-purrr (0.3.0-1) ... Setting up r-cran-later (0.7.5+dfsg-2) ... Setting up r-cran-blob (1.1.1-2) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up r-cran-doparallel (1.0.14-1) ... Setting up r-cran-magic (1.5-9-1) ... Setting up r-cran-htmltools (0.3.6-2) ... Setting up r-cran-tinytex (0.10-1) ... Setting up r-cran-kernsmooth (2.23-15-3+b4) ... Setting up r-cran-mgcv (1.8-27-1) ... Setting up r-cran-plotmo (3.5.2-1) ... Setting up r-cran-robustbase (0.93-3-1) ... Setting up r-cran-domc (1.3.5-2) ... Setting up r-cran-tikzdevice (0.12-1) ... Setting up r-cran-rcpproll (0.3.0-1) ... Setting up r-cran-catools (1.17.1.1-1) ... Setting up r-bioc-iranges (2.16.0-1) ... Setting up r-cran-cvst (0.2-2-2) ... Setting up r-cran-rsqlite (2.1.1-2+b1) ... Setting up r-cran-rcurl (1.95-4.11-1) ... Setting up r-cran-progress (1.2.0-1) ... Setting up r-cran-gdata (2.18.0-2) ... Setting up r-cran-webutils (0.6-2) ... Setting up r-cran-bbmisc (1.11-3) ... Setting up r-cran-pillar (1.3.1-1) ... Setting up r-cran-fs (1.2.6+dfsg-1) ... Setting up r-cran-openssl (1.2.2+dfsg-1) ... Setting up r-cran-base64url (1.4-1) ... Setting up r-cran-stringr (1.4.0-1) ... Setting up r-cran-class (7.3-15-1) ... Setting up r-bioc-biocparallel (1.16.6-1) ... Setting up r-cran-modelmetrics (1.2.2-1) ... Setting up r-bioc-annotationdbi (1.44.0-1) ... Setting up r-cran-desc (1.2.0-2) ... Setting up r-bioc-go.db (3.7.0-1) ... Setting up r-cran-mda (0.4-10-2) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up r-cran-tibble (2.0.1-1) ... Setting up r-cran-fastica (1.2-1-1+b2) ... Setting up r-cran-survival (2.43-3-1) ... Setting up r-cran-latticeextra (0.6-28-2+b2) ... Setting up r-cran-batchjobs (1.7-2) ... Setting up r-cran-geometry (0.3-6+dfsg-2) ... Setting up r-cran-htmlwidgets (1.3+dfsg-1) ... Setting up r-cran-tidyselect (0.2.5-1) ... Setting up r-bioc-snpstats (1.32.0+dfsg-1) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-bioc-genomeinfodb (1.18.1-1) ... Setting up r-cran-httr (1.4.0-3) ... Setting up r-bioc-annotate (1.60.0+dfsg-1) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-cran-lava (1.6.4-1) ... Setting up r-cran-promises (1.0.1-2) ... Setting up r-cran-e1071 (1.7-0.1-1) ... Setting up r-bioc-biomart (2.38.0+dfsg-1) ... Setting up r-cran-dbitest (1.5-2-2) ... Setting up r-bioc-genefilter (1.64.0-1) ... Setting up r-bioc-xvector (0.22.0-1) ... Setting up r-cran-knitr (1.21+dfsg-2) ... Setting up r-cran-earth (4.7.0-1) ... Setting up r-cran-batchtools (0.9.11-2) ... Setting up r-cran-dplyr (0.7.8-1) ... Setting up r-cran-drr (0.0.3-2) ... Setting up r-cran-gplots (3.0.1.1-1) ... Setting up r-bioc-delayedarray (0.8.0+dfsg-2) ... Setting up r-cran-lubridate (1.7.4-2) ... Setting up r-cran-rocr (1.0-7-4) ... Setting up r-cran-prodlim (2018.04.18-2) ... Setting up r-cran-mlmetrics (1.1.1-2) ... Setting up r-cran-ddalpha (1.3.8-1) ... Setting up r-cran-ggplot2 (3.1.0-1) ... Setting up r-bioc-genomicranges (1.34.0+dfsg-1) ... Setting up r-cran-dimred (0.2.2-1) ... Setting up r-cran-httpuv (1.4.5.1+dfsg-1) ... Setting up r-cran-rpart (4.1-13-1+b1) ... Setting up r-bioc-biostrings (2.50.2-1) ... Setting up r-bioc-annotationfilter (1.6.0+dfsg-1) ... Setting up r-cran-shiny (1.2.0+dfsg-1) ... Setting up r-cran-ipred (0.9-8-1) ... Setting up r-cran-viridis (0.5.1-2) ... Setting up r-cran-rmarkdown (1.11+dfsg-1) ... Setting up r-cran-tidyr (0.8.2-1) ... Setting up r-bioc-rsamtools (1.34.1-1) ... Setting up r-cran-recipes (0.1.4-2) ... Setting up r-recommended (3.5.2-1) ... Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Setting up r-cran-htmltable (1.13.1-1) ... Setting up r-cran-caret (6.0-81-2) ... Setting up r-bioc-genomicalignments (1.18.1-1) ... Setting up r-bioc-rtracklayer (1.42.1-2) ... Setting up r-bioc-genomicfeatures (1.34.3+dfsg-1) ... Setting up r-cran-hmisc (4.2-0-1) ... Setting up r-bioc-shortread (1.40.0-1) ... Setting up r-bioc-bsgenome (1.50.0-1) ... Setting up r-bioc-ensembldb (2.6.5+dfsg-1) ... Setting up r-bioc-variantannotation (1.28.10-1) ... Setting up r-bioc-biovizbase (1.30.1-1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-yf', 'dist-upgrade'] 1m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m59.0s DUMP: f6fc0f2636004ef589309651dfd778f4 - 1m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-variantannotation'] 1m59.2s DUMP: Package: r-bioc-variantannotation Version: 1.28.10-1 Installed-Size: 4043 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.2-1), r-api-3.5, r-api-bioc-3.8, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-bioc-summarizedexperiment (>= 1.9.9), r-bioc-rsamtools (>= 1.33.6), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.17.24), r-bioc-iranges (>= 2.13.13), r-bioc-xvector (>= 0.19.7), r-bioc-biostrings (>= 2.47.6), r-bioc-annotationdbi (>= 1.27.9), r-bioc-rtracklayer (>= 1.39.7), r-bioc-bsgenome (>= 1.47.3), r-bioc-genomicfeatures (>= 1.31.3), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3) Recommends: r-cran-runit, r-bioc-snpstats Suggests: r-bioc-annotationhub, r-cran-ggplot2 Description-en: BioConductor annotation of genetic variants This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes. Description-md5: 17670e83de551a30abddcb85706e9bf5 Homepage: https://bioconductor.org/packages/VariantAnnotation/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.28.10-1_amd64.deb Size: 2995440 MD5sum: 5a73575e59ec9a4ac27741f27a804580 SHA256: cb0be6a108742b3df2d2bd013ab97c4c6c2f48cea5cd8ca1a7ff7e2878a6cfd1 1m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-variantannotation'] 1m59.2s INFO: apt-cache knows about the following packages: r-bioc-variantannotation 1m59.2s INFO: Running scripts pre_install 1m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_database-server'] 1m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_database-server'] 1m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_exceptions'] 1m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_exceptions'] 1m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_extras'] 1m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_extras'] 1m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture'] 1m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture'] 1m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy'] 1m59.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy'] 1m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy', 'r-bioc-variantannotation'] 1m59.4s DUMP: r-bioc-variantannotation: Installed: 1.28.10-1 Candidate: 1.28.10-1 Version table: *** 1.28.10-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy', 'r-bioc-variantannotation'] 1m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-y', 'install', 'r-bioc-variantannotation'] 1m59.7s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-variantannotation is already the newest version (1.28.10-1). The following packages were automatically installed and are no longer required: cdbs g++-6 gnupg-agent libblas-common libgdbm3 libgl1-mesa-glx libicu57 libidn11 libncurses5 libperl5.24 libssl1.0.2 libstdc++-6-dev libtinfo-dev libtxc-dxtn-s2tc libunistring0 rename sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-y', 'install', 'r-bioc-variantannotation'] 1m59.7s INFO: Running scripts post_install 1m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_install_exceptions'] 1m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_install_exceptions'] 1m59.7s INFO: Running scripts post_distupgrade 1m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_exceptions'] 1m59.8s DUMP: Normalized /etc/ca-certificates.conf removed empty directory '/etc/dbus-1/system.d' 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_exceptions'] 1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_zz_backports'] 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_distupgrade_zz_backports'] 1m59.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m1.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m1.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m3.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m3.5s INFO: Running scripts pre_install 2m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_database-server'] 2m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_database-server'] 2m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_exceptions'] 2m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_exceptions'] 2m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_extras'] 2m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_extras'] 2m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture'] 2m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture'] 2m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy'] 2m3.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy'] 2m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy', 'r-bioc-variantannotation'] 2m3.7s DUMP: r-bioc-variantannotation: Installed: 1.28.10-1 Candidate: 1.28.10-1 Version table: *** 1.28.10-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 2m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-cache', 'policy', 'r-bioc-variantannotation'] 2m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-y', 'install', 'r-bioc-variantannotation=1.28.10-1'] 2m4.0s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-variantannotation is already the newest version (1.28.10-1). The following packages were automatically installed and are no longer required: cdbs g++-6 gnupg-agent libblas-common libgdbm3 libgl1-mesa-glx libicu57 libidn11 libncurses5 libperl5.24 libssl1.0.2 libstdc++-6-dev libtinfo-dev libtxc-dxtn-s2tc libunistring0 rename sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', '-y', 'install', 'r-bioc-variantannotation=1.28.10-1'] 2m4.0s INFO: Running scripts post_install 2m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_install_exceptions'] 2m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_install_exceptions'] 2m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m8.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', '-ac', '--ignore-obsolete'] 2m13.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', '-ac', '--ignore-obsolete'] 2m13.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m13.9s DUMP: 0.15.6 2m13.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m13.9s INFO: Running adequate version 0.15.6 now. 2m13.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'r-bioc-variantannotation'] 2m14.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'r-bioc-variantannotation'] 2m14.0s INFO: Running scripts pre_remove 2m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_exceptions'] 2m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/pre_remove_exceptions'] 2m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m27.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed autoconf autoconf 2.69-11 install ok installed automake automake 1:1.16.1-4 install ok installed autotools-dev autotools-dev 20180224.1 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed build-essential build-essential 12.6 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed bzip2-doc bzip2-doc 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed cdbs cdbs 0.4.159 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-6 cpp-6 6.3.0-18+deb9u1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed dash dash 0.5.10.2-5 install ok installed dbus dbus 1.12.20-0+deb10u1 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dirmngr dirmngr 2.2.12-1+deb10u2 install ok installed dpkg dpkg 1.19.8 install ok installed dpkg-dev dpkg-dev 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed fakeroot fakeroot 1.23-1 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-6 g++-6 6.3.0-18+deb9u1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-6 gcc-6 6.3.0-18+deb9u1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-7-base:amd64 gcc-7-base 7.4.0-6 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gfortran gfortran 4:8.3.0-1 install ok installed gfortran-6 gfortran-6 6.3.0-18+deb9u1 install ok installed gfortran-8 gfortran-8 8.3.0-6 install ok installed gnupg gnupg 2.2.12-1+deb10u2 install ok installed gnupg-agent gnupg-agent 2.2.12-1+deb10u2 install ok installed gnupg-l10n gnupg-l10n 2.2.12-1+deb10u2 install ok installed gnupg-utils gnupg-utils 2.2.12-1+deb10u2 install ok installed gpg gpg 2.2.12-1+deb10u2 install ok installed gpg-agent gpg-agent 2.2.12-1+deb10u2 install ok installed gpg-wks-client gpg-wks-client 2.2.12-1+deb10u2 install ok installed gpg-wks-server gpg-wks-server 2.2.12-1+deb10u2 install ok installed gpgconf gpgconf 2.2.12-1+deb10u2 install ok installed gpgsm gpgsm 2.2.12-1+deb10u2 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed ibverbs-providers:amd64 ibverbs-providers 22.1-1 install ok installed icu-devtools icu-devtools 63.1-6+deb10u3 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed krb5-locales krb5-locales 1.17-3+deb10u4 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-2 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-5+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-3 install ok installed libapparmor1:amd64 libapparmor1 2.13.2-10 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libasan3:amd64 libasan3 6.3.0-18+deb9u1 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libassuan0:amd64 libassuan0 2.5.2-1 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas-dev:amd64 libblas-dev 3.8.0-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.7-2+deb10u1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-9.2~deb10u1 install ok installed libc-ares2:amd64 libc-ares2 1.14.0-1+deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcaf-openmpi-3:amd64 libcaf-openmpi-3 2.4.0-2 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcilkrts5:amd64 libcilkrts5 7.4.0-6 install ok installed libcoarrays-dev:amd64 libcoarrays-dev 2.4.0-2 install ok installed libcoarrays-openmpi-dev:amd64 libcoarrays-openmpi-dev 2.4.0-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.20-0+deb10u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdpkg-perl libdpkg-perl 1.19.8 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.97-1 install ok installed libdrm-common libdrm-common 2.4.97-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.97-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.97-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.97-1 install ok installed libdrm2:amd64 libdrm2 2.4.97-1 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libelf1:amd64 libelf1 0.176-1.1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libevent-2.1-6:amd64 libevent-2.1-6 2.1.8-stable-4 install ok installed libevent-core-2.1-6:amd64 libevent-core-2.1-6 2.1.8-stable-4 install ok installed libevent-pthreads-2.1-6:amd64 libevent-pthreads-2.1-6 2.1.8-stable-4 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfabric1 libfabric1 1.6.2-3 install ok installed libfakeroot:amd64 libfakeroot 1.23-1 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfile-basedir-perl libfile-basedir-perl 0.08-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.22-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-3+b5 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.29-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.3-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libgcc-6-dev:amd64 libgcc-6-dev 6.3.0-18+deb9u1 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran-6-dev:amd64 libgfortran-6-dev 6.3.0-18+deb9u1 install ok installed libgfortran-8-dev:amd64 libgfortran-8-dev 8.3.0-6 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgl1:amd64 libgl1 1.1.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 18.3.6-2+deb10u1 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 18.3.6-2+deb10u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 18.3.6-2+deb10u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libglib2.0-data libglib2.0-data 2.58.3-2+deb10u3 install ok installed libglvnd0:amd64 libglvnd0 1.1.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 18.3.6-2+deb10u1 install ok installed libglx0:amd64 libglx0 1.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.04-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-3 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhwloc-dev:amd64 libhwloc-dev 1.11.12-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs-dev:amd64 libibverbs-dev 22.1-1 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu-dev:amd64 libicu-dev 63.1-6+deb10u3 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.060-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.25-4 install ok installed libisl15:amd64 libisl15 0.18-1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg-dev libjpeg-dev 1:1.5.2-2+deb10u1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:1.5.2-2+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-d3 libjs-d3 3.5.17-2 install ok installed libjs-es5-shim libjs-es5-shim 4.5.12-1 install ok installed libjs-highlight.js libjs-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.19+dfsg-1 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5 install ok installed libjs-json libjs-json 0~20180723-2 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-3 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.5.3+dfsg-1 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed libksba8:amd64 libksba8 1.3.5-2 install ok installed liblapack-dev:amd64 liblapack-dev 3.8.0-2 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed libllvm7:amd64 libllvm7 1:7.0.1-8+deb10u2 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-3+b4 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-9 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblua5.1-0:amd64 liblua5.1-0 5.1.5-8.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma-dev:amd64 liblzma-dev 5.2.4-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncurses-dev:amd64 libncurses-dev 6.1+20181013-2+deb10u2 install ok installed libncurses5:amd64 libncurses5 6.1+20181013-2+deb10u2 install ok installed libncurses5-dev:amd64 libncurses5-dev 6.1+20181013-2+deb10u2 install ok installed libncurses6:amd64 libncurses6 6.1+20181013-2+deb10u2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.1.0-5+b1 install ok installed libnet-http-perl libnet-http-perl 6.18-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.85-2+deb10u1 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1 install ok installed libnl-3-dev:amd64 libnl-3-dev 3.4.0-1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1 install ok installed libnl-route-3-dev:amd64 libnl-route-3-dev 3.4.0-1 install ok installed libnode64:amd64 libnode64 10.24.0~dfsg-1~deb10u1 install ok installed libnpth0:amd64 libnpth0 1.6-1 install ok installed libnuma-dev:amd64 libnuma-dev 2.0.12-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libopenmpi-dev:amd64 libopenmpi-dev 3.1.3-11 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-11 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre16-3:amd64 libpcre16-3 2:8.39-12 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.39-12 install ok installed libpcre32-3:amd64 libpcre32-3 2:8.39-12 install ok installed libpcrecpp0v5:amd64 libpcrecpp0v5 2:8.39-12 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpmix2:amd64 libpmix2 3.1.2-3 install ok installed libpng-dev:amd64 libpng-dev 1.6.36-6 install ok installed libpng-tools libpng-tools 1.6.36-6 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libqhull7:amd64 libqhull7 2015.2-4 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libreadline-dev:amd64 libreadline-dev 7.0-5 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsensors-config libsensors-config 1:3.5.0-3 deinstall ok config-files libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsensors5:amd64 libsensors5 1:3.5.0-3 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++-6-dev:amd64 libstdc++-6-dev 6.3.0-18+deb9u1 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b7 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb10u1 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.1+20181013-2+deb10u2 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libtool libtool 2.4.6-9 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libtxc-dxtn-s2tc:amd64 libtxc-dxtn-s2tc 1.0+git20151227-2 install ok installed libubsan0:amd64 libubsan0 7.4.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libuv1:amd64 libuv1 1.24.1-1+deb10u1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwww-perl libwww-perl 6.36-2 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-7 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.13.1-2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.13.1-2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.13.1-2 install ok installed libxcb-present0:amd64 libxcb-present0 1.13.1-2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.15-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-3+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-2 install ok installed libxml-parser-perl libxml-parser-perl 2.44-4 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1.1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed littler littler 0.3.6-1 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed m4 m4 1.4.18-2 install ok installed make make 4.2.1-1.2 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed mpi-default-bin mpi-default-bin 1.13 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed netbase netbase 5.6 install ok installed node-highlight.js node-highlight.js 9.12.0+dfsg1-4+deb10u1 install ok installed node-normalize.css node-normalize.css 8.0.1-3 install ok installed nodejs nodejs 10.24.0~dfsg-1~deb10u1 install ok installed nodejs-doc nodejs-doc 10.24.0~dfsg-1~deb10u1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed openmpi-bin openmpi-bin 3.1.3-11 install ok installed openmpi-common openmpi-common 3.1.3-11 install ok installed openssh-client openssh-client 1:7.9p1-10+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed pandoc pandoc 2.2.1-3+b2 install ok installed pandoc-data pandoc-data 2.2.1-3 install ok installed passwd passwd 1:4.5-1.1 install ok installed patch patch 2.7.6-3+deb10u1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed pinentry-curses pinentry-curses 1.1.0-2 install ok installed pkg-config pkg-config 0.29-6 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb10u1 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed r-base-dev r-base-dev 3.5.2-1 install ok installed r-bioc-annotate r-bioc-annotate 1.60.0+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.44.0-1 install ok installed r-bioc-annotationfilter r-bioc-annotationfilter 1.6.0+dfsg-1 install ok installed r-bioc-biobase r-bioc-biobase 2.42.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.28.0-2 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.16.6-1 install ok installed r-bioc-biomart r-bioc-biomart 2.38.0+dfsg-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.50.2-1 install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.30.1-1 install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.50.0-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.8.0+dfsg-2 install ok installed r-bioc-ensembldb r-bioc-ensembldb 2.6.5+dfsg-1 install ok installed r-bioc-genefilter r-bioc-genefilter 1.64.0-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.18.1-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.0-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.18.1-1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.34.3+dfsg-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.34.0+dfsg-1 install ok installed r-bioc-go.db r-bioc-go.db 3.7.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.16.0-1 install ok installed r-bioc-protgenerics r-bioc-protgenerics 1.14.0-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 1.34.1-1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.42.1-2 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.20.1-2 install ok installed r-bioc-shortread r-bioc-shortread 1.40.0-1 install ok installed r-bioc-snpstats r-bioc-snpstats 1.32.0+dfsg-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.12.0+dfsg-1 install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.28.10-1 install ok installed r-bioc-xvector r-bioc-xvector 0.22.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.28.0+dfsg-1 install ok installed r-cran-abind r-cran-abind 1.4-5-1.2 install ok installed r-cran-acepack r-cran-acepack 1.4.1-2+b4 install ok installed r-cran-askpass r-cran-askpass 1.1-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-backports r-cran-backports 1.1.3-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-2 install ok installed r-cran-base64url r-cran-base64url 1.4-1 install ok installed r-cran-batchjobs r-cran-batchjobs 1.7-2 install ok installed r-cran-batchtools r-cran-batchtools 0.9.11-2 install ok installed r-cran-bbmisc r-cran-bbmisc 1.11-3 install ok installed r-cran-bindr r-cran-bindr 0.1.1-2 install ok installed r-cran-bindrcpp r-cran-bindrcpp 0.2.2-2 install ok installed r-cran-bit r-cran-bit 1.1-14-1+b1 install ok installed r-cran-bit64 r-cran-bit64 0.9-7-3 install ok installed r-cran-bitops r-cran-bitops 1.0-6-4 install ok installed r-cran-blob r-cran-blob 1.1.1-2 install ok installed r-cran-boot r-cran-boot 1.3-20-2 install ok installed r-cran-brew r-cran-brew 1.0-6-3 install ok installed r-cran-caret r-cran-caret 6.0-81-2 install ok installed r-cran-catools r-cran-catools 1.17.1.1-1 install ok installed r-cran-checkmate r-cran-checkmate 1.9.1-1 install ok installed r-cran-chron r-cran-chron 2.3-53-1 install ok installed r-cran-class r-cran-class 7.3-15-1 install ok installed r-cran-cli r-cran-cli 1.0.1-1 install ok installed r-cran-cluster r-cran-cluster 2.0.7-1-1+b3 install ok installed r-cran-codetools r-cran-codetools 0.2-16-1 install ok installed r-cran-colorspace r-cran-colorspace 1.4-0+dfsg-1 install ok installed r-cran-crayon r-cran-crayon 1.3.4-4 install ok installed r-cran-curl r-cran-curl 3.3+dfsg-1 install ok installed r-cran-cvst r-cran-cvst 0.2-2-2 install ok installed r-cran-data.table r-cran-data.table 1.12.0+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.0.0-2 install ok installed r-cran-dbitest r-cran-dbitest 1.5-2-2 install ok installed r-cran-ddalpha r-cran-ddalpha 1.3.8-1 install ok installed r-cran-deoptimr r-cran-deoptimr 1.0-8-1+b2 install ok installed r-cran-desc r-cran-desc 1.2.0-2 install ok installed r-cran-dichromat r-cran-dichromat 1:2.0-0-2 install ok installed r-cran-digest r-cran-digest 0.6.18-1 install ok installed r-cran-dimred r-cran-dimred 0.2.2-1 install ok installed r-cran-domc r-cran-domc 1.3.5-2 install ok installed r-cran-doparallel r-cran-doparallel 1.0.14-1 install ok installed r-cran-dplyr r-cran-dplyr 0.7.8-1 install ok installed r-cran-drr r-cran-drr 0.0.3-2 install ok installed r-cran-e1071 r-cran-e1071 1.7-0.1-1 install ok installed r-cran-earth r-cran-earth 4.7.0-1 install ok installed r-cran-evaluate r-cran-evaluate 0.13-1 install ok installed r-cran-fansi r-cran-fansi 0.4.0-1 install ok installed r-cran-fastica r-cran-fastica 1.2-1-1+b2 install ok installed r-cran-fastmatch r-cran-fastmatch 1.1-0-2 install ok installed r-cran-filehash r-cran-filehash 2.4-1-3 install ok installed r-cran-foreach r-cran-foreach 1.4.4-2 install ok installed r-cran-foreign r-cran-foreign 0.8.71-1 install ok installed r-cran-formatr r-cran-formatr 1.5-3 install ok installed r-cran-formula r-cran-formula 1.2-3-2 install ok installed r-cran-fs r-cran-fs 1.2.6+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-3 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-2 install ok installed r-cran-gdata r-cran-gdata 2.18.0-2 install ok installed r-cran-generics r-cran-generics 0.0.2-2 install ok installed r-cran-geometry r-cran-geometry 0.3-6+dfsg-2 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.1.0-1 install ok installed r-cran-glue r-cran-glue 1.3.0-1 install ok installed r-cran-gower r-cran-gower 0.1.2-2 install ok installed r-cran-gplots r-cran-gplots 3.0.1.1-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-2 install ok installed r-cran-gtable r-cran-gtable 0.2.0-3 install ok installed r-cran-gtools r-cran-gtools 3.8.1-1 install ok installed r-cran-hexbin r-cran-hexbin 1.27.2-2+b1 install ok installed r-cran-highr r-cran-highr 0.7+dfsg-1 install ok installed r-cran-hmisc r-cran-hmisc 4.2-0-1 install ok installed r-cran-hms r-cran-hms 0.4.2-2 install ok installed r-cran-htmltable r-cran-htmltable 1.13.1-1 install ok installed r-cran-htmltools r-cran-htmltools 0.3.6-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.3+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.4.5.1+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.0-3 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2-3 install ok installed r-cran-ipred r-cran-ipred 0.9-8-1 install ok installed r-cran-iterators r-cran-iterators 1.0.10-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.6+dfsg-1 install ok installed r-cran-kernlab r-cran-kernlab 0.9-27-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-15-3+b4 install ok installed r-cran-knitr r-cran-knitr 1.21+dfsg-2 install ok installed r-cran-labeling r-cran-labeling 0.3-3 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.3-2 install ok installed r-cran-later r-cran-later 0.7.5+dfsg-2 install ok installed r-cran-lattice r-cran-lattice 0.20-38-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-28-2+b2 install ok installed r-cran-lava r-cran-lava 1.6.4-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.1-3 install ok installed r-cran-littler r-cran-littler 0.3.6-1 install ok installed r-cran-lubridate r-cran-lubridate 1.7.4-2 install ok installed r-cran-magic r-cran-magic 1.5-9-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-mapproj r-cran-mapproj 1.2.6-2 install ok installed r-cran-maps r-cran-maps 3.3.0-2 install ok installed r-cran-markdown r-cran-markdown 0.9+dfsg-1 install ok installed r-cran-mass r-cran-mass 7.3-51.1-1 install ok installed r-cran-matrix r-cran-matrix 1.2-15-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.54.0-1 install ok installed r-cran-mda r-cran-mda 0.4-10-2 install ok installed r-cran-memoise r-cran-memoise 1.1.0-2 install ok installed r-cran-mgcv r-cran-mgcv 1.8-27-1 install ok installed r-cran-mime r-cran-mime 0.6-1 install ok installed r-cran-mlbench r-cran-mlbench 2.1-1-3 install ok installed r-cran-mlmetrics r-cran-mlmetrics 1.1.1-2 install ok installed r-cran-mockery r-cran-mockery 0.4.1.1+dfsg-1 install ok installed r-cran-mockr r-cran-mockr 0.1-2 install ok installed r-cran-modelmetrics r-cran-modelmetrics 1.2.2-1 install ok installed r-cran-multicore r-cran-multicore 0.2-1+b2 install ok installed r-cran-munsell r-cran-munsell 0.5.0-1 install ok installed r-cran-nlme r-cran-nlme 3.1.137-1+b3 install ok installed r-cran-nnet r-cran-nnet 7.3-12-2+b2 install ok installed r-cran-numderiv r-cran-numderiv 2016.8-1-2 install ok installed r-cran-openssl r-cran-openssl 1.2.2+dfsg-1 install ok installed r-cran-pillar r-cran-pillar 1.3.1-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-plotmo r-cran-plotmo 3.5.2-1 install ok installed r-cran-plotrix r-cran-plotrix 3.7-4-1 install ok installed r-cran-pls r-cran-pls 2.7-0-1 install ok installed r-cran-plyr r-cran-plyr 1.8.4-2 install ok installed r-cran-png r-cran-png 0.1-7-3 install ok installed r-cran-praise r-cran-praise 1.0.0-3 install ok installed r-cran-prettyunits r-cran-prettyunits 1.0.2-3 install ok installed r-cran-prodlim r-cran-prodlim 2018.04.18-2 install ok installed r-cran-progress r-cran-progress 1.2.0-1 install ok installed r-cran-promises r-cran-promises 1.0.1-2 install ok installed r-cran-purrr r-cran-purrr 0.3.0-1 install ok installed r-cran-r6 r-cran-r6 2.4.0-1 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.1-1+b1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-2 install ok installed r-cran-rcpp r-cran-rcpp 1.0.0-1 install ok installed r-cran-rcpproll r-cran-rcpproll 0.3.0-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.11-1 install ok installed r-cran-recipes r-cran-recipes 0.1.4-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.3-2 install ok installed r-cran-rlang r-cran-rlang 0.3.1-2 install ok installed r-cran-rmarkdown r-cran-rmarkdown 1.11+dfsg-1 install ok installed r-cran-rmpi r-cran-rmpi 0.6-9-1 install ok installed r-cran-robustbase r-cran-robustbase 0.93-3-1 install ok installed r-cran-rocr r-cran-rocr 1.0-7-4 install ok installed r-cran-rpart r-cran-rpart 4.1-13-1+b1 install ok installed r-cran-rprojroot r-cran-rprojroot 1.3-2-2 install ok installed r-cran-rsqlite r-cran-rsqlite 2.1.1-2+b1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.9.0-1 install ok installed r-cran-runit r-cran-runit 0.4.32-2 install ok installed r-cran-scales r-cran-scales 1.0.0-2 install ok installed r-cran-sendmailr r-cran-sendmailr 1.2-1-4 install ok installed r-cran-sfsmisc r-cran-sfsmisc 1.1-3-1 install ok installed r-cran-shiny r-cran-shiny 1.2.0+dfsg-1 install ok installed r-cran-snow r-cran-snow 1:0.4.3-1 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-2 install ok installed r-cran-sp r-cran-sp 1:1.3-1-1 install ok installed r-cran-spatial r-cran-spatial 7.3-11-2+b2 install ok installed r-cran-squarem r-cran-squarem 2017.10-1-2 install ok installed r-cran-stringi r-cran-stringi 1.2.4-2 install ok installed r-cran-stringr r-cran-stringr 1.4.0-1 install ok installed r-cran-survival r-cran-survival 2.43-3-1 install ok installed r-cran-sys r-cran-sys 2.1-1 install ok installed r-cran-teachingdemos r-cran-teachingdemos 2.10-3 install ok installed r-cran-testit r-cran-testit 0.9-1 install ok installed r-cran-testthat r-cran-testthat 2.0.1-1 install ok installed r-cran-tibble r-cran-tibble 2.0.1-1 install ok installed r-cran-tidyr r-cran-tidyr 0.8.2-1 install ok installed r-cran-tidyselect r-cran-tidyselect 0.2.5-1 install ok installed r-cran-tikzdevice r-cran-tikzdevice 0.12-1 install ok installed r-cran-timedate r-cran-timedate 3043.102-1+b1 install ok installed r-cran-tinytex r-cran-tinytex 0.10-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-1+b1 install ok installed r-cran-viridis r-cran-viridis 0.5.1-2 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-3 install ok installed r-cran-webutils r-cran-webutils 0.6-2 install ok installed r-cran-withr r-cran-withr 2.1.2-3 install ok installed r-cran-xfun r-cran-xfun 0.4-1 install ok installed r-cran-xml r-cran-xml 3.98-1.17-1 install ok installed r-cran-xml2 r-cran-xml2 1.2.0-3 install ok installed r-cran-xtable r-cran-xtable 1:1.8-3-1 install ok installed r-cran-yaml r-cran-yaml 2.2.0-1 install ok installed r-doc-html r-doc-html 3.5.2-1 install ok installed r-recommended r-recommended 3.5.2-1 install ok installed readline-common readline-common 7.0-5 install ok installed rename rename 1.10-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.10-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed x11-utils x11-utils 7.7+4 install ok installed x11-xserver-utils x11-xserver-utils 7.7+8 install ok installed xauth xauth 1:1.0.10-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-1+deb10u1 2m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'remove', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'cdbs', 'cpp', 'cpp-6', 'cpp-8', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++-', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gfortran', 'gfortran-6', 'gfortran-8', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'ibverbs-providers:amd64', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburi-perl', 'libuv1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'm4', 'make', 'manpages', 'manpages-dev', 'mpi-default-bin', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-snpstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-boot', 'r-cran-brew', 'r-cran-caret', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-ddalpha', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dimred', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-drr', 'r-cran-e1071', 'r-cran-earth', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastica', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-gdata', 'r-cran-generics', 'r-cran-geometry', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-ipred', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modelmetrics', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-runit', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-teachingdemos', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-webutils', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-variantannotation'] 2m32.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libsensors4' is not installed, so not removed The following packages will be REMOVED: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 bzip2-doc cdbs cpp cpp-6 cpp-8 dbus dirmngr dpkg-dev fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-6 g++-8 gcc gcc-6 gcc-7-base gcc-8 gfortran gfortran-6 gfortran-8 gnupg gnupg-agent gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm ibverbs-providers icu-devtools javascript-common krb5-locales libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapparmor1 libasan3 libasan5 libassuan0 libatomic1 libauthen-sasl-perl libbinutils libblas-common libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libc-ares2 libc-dev-bin libc6-dev libcaf-openmpi-3 libcairo2 libcc1-0 libcilkrts5 libcoarrays-dev libcoarrays-openmpi-dev libcurl4 libdata-dump-perl libdatrie1 libdbus-1-3 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfakeroot libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-6-dev libgcc-8-dev libgdbm-compat4 libgdbm3 libgdbm6 libgfortran-6-dev libgfortran-8-dev libgfortran3 libgfortran5 libgl1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu-dev libicu57 libicu63 libidn11 libio-html-perl libio-socket-ssl-perl libio-stringy-perl libipc-system-simple-perl libisl15 libisl19 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libllvm7 liblocale-gettext-perl liblsan0 libltdl-dev libltdl7 liblua5.1-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmailtools-perl libmpc3 libmpfr4 libmpfr6 libmpx2 libncurses-dev libncurses5 libncurses5-dev libncurses6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnode64 libnpth0 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.24 libperl5.28 libpixman-1-0 libpmix2 libpng-dev libpng-tools libpng16-16 libpsl5 libpsm-infinipath1 libpsm2-2 libqhull7 libquadmath0 librdmacm1 libreadline-dev libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsqlite3-0 libssh2-1 libssl1.0.2 libstdc++-6-dev libstdc++-8-dev libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libtry-tiny-perl libtsan0 libtxc-dxtn-s2tc libubsan0 libubsan1 libunistring0 liburi-perl libuv1 libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 linux-libc-dev littler lsb-base m4 make manpages manpages-dev mpi-default-bin netbase node-highlight.js node-normalize.css nodejs nodejs-doc ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pandoc pandoc-data patch perl perl-modules-5.24 perl-modules-5.28 perl-openssl-defaults pinentry-curses pkg-config publicsuffix r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-protgenerics r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-shortread r-bioc-snpstats r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchjobs r-cran-batchtools r-cran-bbmisc r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot r-cran-brew r-cran-caret r-cran-catools r-cran-checkmate r-cran-chron r-cran-class r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-crayon r-cran-curl r-cran-cvst r-cran-data.table r-cran-dbi r-cran-dbitest r-cran-ddalpha r-cran-deoptimr r-cran-desc r-cran-dichromat r-cran-digest r-cran-dimred r-cran-domc r-cran-doparallel r-cran-dplyr r-cran-drr r-cran-e1071 r-cran-earth r-cran-evaluate r-cran-fansi r-cran-fastica r-cran-fastmatch r-cran-filehash r-cran-foreach r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-generics r-cran-geometry r-cran-ggplot2 r-cran-glue r-cran-gower r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-ipred r-cran-iterators r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lazyeval r-cran-littler r-cran-lubridate r-cran-magic r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mda r-cran-memoise r-cran-mgcv r-cran-mime r-cran-mlbench r-cran-mlmetrics r-cran-mockery r-cran-mockr r-cran-modelmetrics r-cran-multicore r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotmo r-cran-plotrix r-cran-pls r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-prodlim r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpproll r-cran-rcurl r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-rmpi r-cran-robustbase r-cran-rocr r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-scales r-cran-sendmailr r-cran-sfsmisc r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-sp r-cran-spatial r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-teachingdemos r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tikzdevice r-cran-timedate r-cran-tinytex r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-webutils r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml r-doc-html r-recommended readline-common rename sgml-base shared-mime-info tzdata ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xml-core xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 572 to remove and 0 not upgraded. After this operation, 1617 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 46294 files and directories currently installed.) Removing libopenmpi-dev:amd64 (3.1.3-11) ... Removing libhwloc-dev:amd64 (1.11.12-3) ... Removing libltdl-dev:amd64 (2.4.6-9) ... Removing automake (1:1.16.1-4) ... Removing autoconf (2.69-11) ... Removing libtool (2.4.6-9) ... Removing autotools-dev (20180224.1) ... Removing g++-6 (6.3.0-18+deb9u1) ... Removing gfortran-6 (6.3.0-18+deb9u1) ... Removing gcc-6 (6.3.0-18+deb9u1) ... Removing r-base-dev (3.5.2-1) ... Removing build-essential (12.6) ... Removing dpkg-dev (1.19.8) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing bzip2-doc (1.0.6-9.2~deb10u1) ... Removing cdbs (0.4.159) ... Removing x11-xserver-utils (7.7+8) ... Removing cpp-6 (6.3.0-18+deb9u1) ... Removing libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Removing libcoarrays-dev:amd64 (2.4.0-2) ... Removing gfortran (4:8.3.0-1) ... Removing dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing gnupg (2.2.12-1+deb10u2) ... Removing gpg-wks-client (2.2.12-1+deb10u2) ... Removing dirmngr (2.2.12-1+deb10u2) ... Removing fakeroot (1.23-1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing file (1:5.35-4+deb10u2) ... Removing r-recommended (3.5.2-1) ... Removing r-cran-caret (6.0-81-2) ... Removing r-cran-recipes (0.1.4-2) ... Removing r-cran-ipred (0.9-8-1) ... Removing r-cran-prodlim (2018.04.18-2) ... Removing r-cran-ddalpha (1.3.8-1) ... Removing r-cran-geometry (0.3-6+dfsg-2) ... Removing r-cran-magic (1.5-9-1) ... Removing r-cran-abind (1.4-5-1.2) ... Removing r-bioc-biovizbase (1.30.1-1) ... Removing r-bioc-variantannotation (1.28.10-1) ... Removing r-cran-robustbase (0.93-3-1) ... Removing x11-utils (7.7+4) ... Removing r-cran-rmarkdown (1.11+dfsg-1) ... Removing r-cran-shiny (1.2.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/woff/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/svg/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/eot/font-awesome' not empty so not removed Removing r-cran-webutils (0.6-2) ... Removing r-cran-hmisc (4.2-0-1) ... Removing r-cran-htmltable (1.13.1-1) ... Removing r-cran-knitr (1.21+dfsg-2) ... Removing libjs-mathjax (2.7.4+dfsg-1) ... 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Removing r-cran-kernlab (0.9-27-1) ... Removing r-cran-fastica (1.2-1-1+b2) ... Removing libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Removing libbrotli1:amd64 (1.0.7-2+deb10u1) ... Removing libgl1-mesa-glx:amd64 (18.3.6-2+deb10u1) ... Removing libgl1:amd64 (1.1.0-1) ... Removing libglx0:amd64 (1.1.0-1) ... Removing libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing xauth (1:1.0.10-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Removing libc-ares2:amd64 (1.14.0-1+deb10u1) ... Removing r-bioc-ensembldb (2.6.5+dfsg-1) ... Removing r-bioc-genomicfeatures (1.34.3+dfsg-1) ... Removing libpng-dev:amd64 (1.6.36-6) ... Removing libnuma-dev:amd64 (2.0.12-1) ... Removing libpcre3-dev:amd64 (2:8.39-12) ... Removing libreadline-dev:amd64 (7.0-5) ... Removing libcaf-openmpi-3:amd64 (2.4.0-2) ... Removing r-bioc-genefilter (1.64.0-1) ... Removing r-bioc-annotate (1.60.0+dfsg-1) ... Removing r-bioc-biomart (2.38.0+dfsg-1) ... Removing r-cran-httr (1.4.0-3) ... Removing r-cran-curl (3.3+dfsg-1) ... Removing libdata-dump-perl (1.23-1) ... Removing libnet-dbus-perl (1.1.0-5+b1) ... Removing libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Removing pkg-config (0.29-6) ... Removing libdpkg-perl (1.19.8) ... Removing libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing libdrm-amdgpu1:amd64 (2.4.97-1) ... Removing libdrm-radeon1:amd64 (2.4.97-1) ... Removing libdrm-nouveau2:amd64 (2.4.97-1) ... Removing libdrm-intel1:amd64 (2.4.97-1) ... Removing r-cran-rmpi (0.6-9-1) ... Removing mpi-default-bin (1.13) ... Removing openmpi-bin (3.1.3-11) ... Removing openssh-client (1:7.9p1-10+deb10u2) ... Removing libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libelf1:amd64 (0.176-1.1) ... Removing libxml-twig-perl (1:3.50-1.1) ... Removing libxml-parser-perl (2.44-4) ... Removing libopenmpi3:amd64 (3.1.3-11) ... Removing libpmix2:amd64 (3.1.2-3) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing libfabric1 (1.6.2-3) ... Removing libfakeroot:amd64 (1.23-1) ... Removing libfile-mimeinfo-perl (0.29-1) ... Removing libfile-desktopentry-perl (0.22-1) ... Removing libfile-basedir-perl (0.08-1) ... Removing libfile-fcntllock-perl (0.22-3+b5) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing libfontenc1:amd64 (1:1.1.3-1+b2) ... Removing rename (1.10-1) ... Removing libmailtools-perl (2.18-1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing r-cran-mda (0.4-10-2) ... Removing r-cran-hexbin (1.27.2-2+b1) ... Removing libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Removing shared-mime-info (1.10-1) ... Removing libglib2.0-data (2.58.3-2+deb10u3) ... Removing libglvnd0:amd64 (1.1.0-1) ... Removing r-cran-gower (0.1.2-2) ... Removing r-cran-batchjobs (1.7-2) ... Removing libhtml-form-perl (6.03-1) ... Removing libhttp-daemon-perl (6.01-3) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing r-cran-xml2 (1.2.0-3) ... Removing r-cran-tidyr (0.8.2-1) ... Removing littler (0.3.6-1) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-system-simple-perl (1.25-4) ... Removing libisl15:amd64 (0.18-1) ... Removing libjpeg-dev (1:1.5.2-2+deb10u1) ... Removing libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-d3 (3.5.17-2) ... Removing libjs-es5-shim (4.5.12-1) ... Removing r-cran-highr (0.7+dfsg-1) ... Removing libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Removing libjs-jquery-ui (1.12.1+dfsg-5) ... Removing libjs-jquery-datatables (1.10.19+dfsg-1) ... Removing libjs-json (0~20180723-2) ... Removing libjs-microplugin.js (0.0.3+dfsg-1) ... Removing libjs-modernizr (2.6.2+ds1-3) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing libjs-sifter.js (0.5.3+dfsg-1) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Removing libksba8:amd64 (1.3.5-2) ... Removing r-cran-viridis (0.5.1-2) ... Removing r-cran-ggplot2 (3.1.0-1) ... Removing r-cran-mgcv (1.8-27-1) ... Removing liblocale-gettext-perl (1.07-3+b4) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Removing liblzma-dev:amd64 (5.2.4-1+deb10u1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Removing libncurses5-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing libnl-route-3-dev:amd64 (3.4.0-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-dev:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libnpth0:amd64 (1.6-1) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpcre16-3:amd64 (2:8.39-12) ... Removing libpcre32-3:amd64 (2:8.39-12) ... Removing libpcrecpp0v5:amd64 (2:8.39-12) ... Removing libpng-tools (1.6.36-6) ... Removing r-cran-tikzdevice (0.12-1) ... Removing r-cran-png (0.1-7-3) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libqhull7:amd64 (2015.2-4) ... Removing r-cran-earth (4.7.0-1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsensors5:amd64 (1:3.5.0-3) ... Removing libsensors-config (1:3.5.0-3) ... Removing m4 (1.4.18-2) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libtext-iconv-perl (1.7-5+b7) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing libtxc-dxtn-s2tc:amd64 (1.0+git20151227-2) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing r-cran-httpuv (1.4.5.1+dfsg-1) ... Removing r-cran-batchtools (0.9.11-2) ... Removing r-cran-fs (1.2.6+dfsg-1) ... Removing libuv1:amd64 (1.24.1-1+deb10u1) ... Removing libx11-protocol-perl (0.56-7) ... Removing libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb-dri2-0:amd64 (1.13.1-2) ... Removing libxcb-dri3-0:amd64 (1.13.1-2) ... Removing libxcb-glx0:amd64 (1.13.1-2) ... Removing libxcb-present0:amd64 (1.13.1-2) ... Removing libxcb-shape0:amd64 (1.13.1-2) ... Removing libxcb-sync1:amd64 (1.13.1-2) ... Removing libxcomposite1:amd64 (1:0.4.4-2) ... Removing libxcursor1:amd64 (1:1.1.15-2) ... Removing libxdamage1:amd64 (1:1.1.4-3+b3) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxinerama1:amd64 (2:1.1.4-2) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing make (4.2.1-1.2) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing node-normalize.css (8.0.1-3) ... Removing nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing openmpi-common (3.1.3-11) ... Removing pandoc-data (2.2.1-3) ... Removing patch (2.7.6-3+deb10u1) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing publicsuffix (20220811.1734-0+deb10u1) ... Removing r-bioc-go.db (3.7.0-1) ... Removing r-bioc-annotationdbi (1.44.0-1) ... Removing r-bioc-annotationfilter (1.6.0+dfsg-1) ... Removing r-bioc-shortread (1.40.0-1) ... Removing r-bioc-bsgenome (1.50.0-1) ... Removing r-bioc-snpstats (1.32.0+dfsg-1) ... Removing r-bioc-protgenerics (1.14.0-1) ... Removing r-cran-acepack (1.4.1-2+b4) ... Removing r-cran-openssl (1.2.2+dfsg-1) ... Removing r-cran-askpass (1.1-1) ... Removing r-cran-rsqlite (2.1.1-2+b1) ... Removing r-cran-dbitest (1.5-2-2) ... Removing r-cran-blob (1.1.1-2) ... Removing r-cran-progress (1.2.0-1) ... Removing r-cran-prettyunits (1.0.2-3) ... Removing r-cran-dplyr (0.7.8-1) ... Removing r-cran-desc (1.2.0-2) ... Removing r-cran-rprojroot (1.3-2-2) ... Removing r-cran-bbmisc (1.11-3) ... Removing r-cran-checkmate (1.9.1-1) ... Removing r-cran-sendmailr (1.2-1-4) ... Removing r-cran-base64enc (0.1-3-2) ... Removing r-cran-base64url (1.4-1) ... Removing r-cran-bindrcpp (0.2.2-2) ... Removing r-cran-bindr (0.1.1-2) ... Removing r-cran-bit64 (0.9-7-3) ... Removing r-cran-bit (1.1-14-1+b1) ... Removing r-cran-mlmetrics (1.1.1-2) ... Removing r-cran-rocr (1.0-7-4) ... Removing r-cran-gplots (3.0.1.1-1) ... Removing r-cran-catools (1.17.1.1-1) ... Removing r-cran-boot (1.3-20-2) ... Removing r-cran-brew (1.0-6-3) ... Removing r-cran-chron (2.3-53-1) ... Removing r-cran-e1071 (1.7-0.1-1) ... Removing r-cran-class (7.3-15-1) ... Removing r-cran-tibble (2.0.1-1) ... Removing r-cran-pillar (1.3.1-1) ... Removing r-cran-cluster (2.0.7-1-1+b3) ... Removing r-cran-doparallel (1.0.14-1) ... Removing r-cran-domc (1.3.5-2) ... Removing r-cran-foreach (1.4.4-2) ... Removing r-cran-codetools (0.2-16-1) ... Removing r-cran-scales (1.0.0-2) ... Removing r-cran-munsell (0.5.0-1) ... Removing r-cran-colorspace (1.4-0+dfsg-1) ... Removing r-cran-mockery (0.4.1.1+dfsg-1) ... Removing r-cran-testthat (2.0.1-1) ... Removing r-cran-modelmetrics (1.2.2-1) ... Removing r-cran-dbi (1.0.0-2) ... Removing r-cran-deoptimr (1.0-8-1+b2) ... Removing r-cran-dichromat (1:2.0-0-2) ... Removing r-cran-memoise (1.1.0-2) ... Removing r-cran-htmlwidgets (1.3+dfsg-1) ... Removing r-cran-htmltools (0.3.6-2) ... Removing r-cran-digest (0.6.18-1) ... Removing r-cran-evaluate (0.13-1) ... Removing r-cran-fansi (0.4.0-1) ... Removing r-cran-fastmatch (1.1-0-2) ... Removing r-cran-filehash (2.4-1-3) ... Removing r-cran-foreign (0.8.71-1) ... Removing r-cran-formula (1.2-3-2) ... Removing r-cran-gdata (2.18.0-2) ... Removing r-cran-generics (0.0.2-2) ... Removing r-cran-reshape2 (1.4.3-2) ... Removing r-cran-gridextra (2.3-2) ... Removing r-cran-gtable (0.2.0-3) ... Removing r-cran-gtools (3.8.1-1) ... Removing r-cran-hms (0.4.2-2) ... Removing r-cran-hwriter (1.3.2-3) ... Removing r-cran-iterators (1.0.10-1) ... Removing r-cran-jsonlite (1.6+dfsg-1) ... Removing r-cran-kernsmooth (2.23-15-3+b4) ... Removing r-cran-labeling (0.3-3) ... Removing r-cran-promises (1.0.1-2) ... Removing r-cran-later (0.7.5+dfsg-2) ... Removing r-cran-nlme (3.1.137-1+b3) ... Removing r-cran-sp (1:1.3-1-1) ... Removing r-cran-latticeextra (0.6-28-2+b2) ... Removing r-cran-lava (1.6.4-1) ... Removing r-cran-mockr (0.1-2) ... Removing r-cran-lazyeval (0.2.1-3) ... Removing r-cran-lubridate (1.7.4-2) ... Removing r-cran-mapproj (1.2.6-2) ... Removing r-cran-maps (3.3.0-2) ... Removing r-cran-markdown (0.9+dfsg-1) ... Removing r-cran-mass (7.3-51.1-1) ... Removing r-cran-mime (0.6-1) ... Removing r-cran-mlbench (2.1-1-3) ... Removing r-cran-multicore (0.2-1+b2) ... Removing r-cran-nnet (7.3-12-2+b2) ... Removing r-cran-numderiv (2016.8-1-2) ... Removing r-cran-pkgconfig (2.0.2-1) ... Removing r-cran-plotmo (3.5.2-1) ... Removing r-cran-plotrix (3.7-4-1) ... Removing r-cran-pls (2.7-0-1) ... Removing r-cran-plyr (1.8.4-2) ... Removing r-cran-praise (1.0.0-3) ... Removing r-cran-r6 (2.4.0-1) ... Removing r-cran-rappdirs (0.3.1-1+b1) ... Removing r-cran-rcolorbrewer (1.1-2-2) ... Removing r-cran-rcpproll (0.3.0-1) ... Removing r-cran-rstudioapi (0.9.0-1) ... Removing r-cran-runit (0.4.32-2) ... Removing r-cran-sfsmisc (1.1-3-1) ... Removing r-cran-sourcetools (0.1.7-2) ... Removing r-cran-spatial (7.3-11-2+b2) ... Removing r-cran-squarem (2017.10-1-2) ... Removing r-cran-sys (2.1-1) ... Removing r-cran-teachingdemos (2.10-3) ... Removing r-cran-testit (0.9-1) ... Removing r-cran-timedate (3043.102-1+b1) ... Removing r-cran-tinytex (0.10-1) ... Removing r-cran-utf8 (1.1.4-1+b1) ... Removing r-cran-viridislite (0.3.0-3) ... Removing r-cran-withr (2.1.2-3) ... Removing r-cran-xfun (0.4-1) ... Removing r-cran-xtable (1:1.8-3-1) ... Removing r-cran-yaml (2.2.0-1) ... Removing r-doc-html (3.5.2-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing g++ (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing r-cran-rpart (4.1-13-1+b1) ... Removing r-cran-survival (2.43-3-1) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing g++-8 (8.3.0-6) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing r-bioc-rtracklayer (1.42.1-2) ... Removing libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Removing libdrm2:amd64 (2.4.97-1) ... Removing libdrm-common (2.4.97-1) ... Removing r-cran-data.table (1.12.0+dfsg-1) ... Removing r-cran-tidyselect (0.2.5-1) ... Removing r-cran-rcpp (1.0.0-1) ... Removing r-cran-littler (0.3.6-1) ... Removing r-cran-xml (3.98-1.17-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... dpkg: warning: while removing libjs-jquery, directory '/usr/share/javascript' not empty so not removed Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing r-bioc-genomicalignments (1.18.1-1) ... Removing r-bioc-rsamtools (1.34.1-1) ... Removing r-bioc-biostrings (2.50.2-1) ... Removing r-cran-backports (1.1.3-1) ... Removing r-cran-cli (1.0.1-1) ... Removing r-cran-crayon (1.3.4-4) ... Removing r-cran-stringr (1.4.0-1) ... Removing r-cran-glue (1.3.0-1) ... Removing r-cran-purrr (0.3.0-1) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing r-cran-rlang (0.3.1-2) ... Removing r-cran-stringi (1.2.4-2) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp (4:8.3.0-1) ... Removing cpp-8 (8.3.0-6) ... Removing r-bioc-summarizedexperiment (1.12.0+dfsg-1) ... Removing r-bioc-delayedarray (0.8.0+dfsg-2) ... Removing r-bioc-biocparallel (1.16.6-1) ... Removing r-cran-snow (1:0.4.3-1) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing r-cran-matrix (1.2-15-1) ... Removing r-bioc-zlibbioc (1.28.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing r-bioc-biobase (2.42.0-1) ... Removing r-bioc-genomicranges (1.34.0+dfsg-1) ... Removing r-bioc-xvector (0.22.0-1) ... Removing r-bioc-genomeinfodb (1.18.1-1) ... Removing r-bioc-iranges (2.16.0-1) ... Removing r-bioc-s4vectors (0.20.1-2) ... Removing r-bioc-biocgenerics (0.28.0-2) ... Removing r-bioc-genomeinfodbdata (1.2.0-1) ... Removing r-cran-assertthat (0.2.0-2) ... Removing r-cran-futile.logger (1.4.3-3) ... Removing r-cran-lambda.r (1.2.3-2) ... Removing r-cran-formatr (1.5-3) ... Removing r-cran-futile.options (1.0.1-2) ... Removing r-cran-lattice (0.20-38-1) ... Removing r-cran-matrixstats (0.54.0-1) ... Removing r-cran-rcurl (1.95-4.11-1) ... Removing r-cran-bitops (1.0-6-4) ... Removing r-base-core (3.5.2-1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libreadline7:amd64 (7.0-5) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing readline-common (7.0-5) ... Removing tzdata (2021a-0+deb10u6) ... Removing ucf (3.0038+nmu1) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing libwww-perl (6.36-2) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.04-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libnet-http-perl (6.18-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.04-1) ... Removing libio-socket-ssl-perl (2.060-3) ... Removing libnet-ssleay-perl (1.85-2+deb10u1) ... Removing libtry-tiny-perl (0.30-1) ... Removing netbase (5.6) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing liburi-perl (1.76-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2+deb10u1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 2m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'remove', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'cdbs', 'cpp', 'cpp-6', 'cpp-8', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++-', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gfortran', 'gfortran-6', 'gfortran-8', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'ibverbs-providers:amd64', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburi-perl', 'libuv1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'm4', 'make', 'manpages', 'manpages-dev', 'mpi-default-bin', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-snpstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-boot', 'r-cran-brew', 'r-cran-caret', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-ddalpha', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dimred', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-drr', 'r-cran-e1071', 'r-cran-earth', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastica', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-gdata', 'r-cran-generics', 'r-cran-geometry', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-ipred', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modelmetrics', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-runit', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-teachingdemos', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-webutils', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-variantannotation'] 2m32.5s INFO: Running scripts post_remove 2m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_remove_exceptions'] 2m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_remove_exceptions'] 2m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--purge', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'cdbs', 'cpp', 'cpp-6', 'cpp-8', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gfortran', 'gfortran-6', 'gfortran-8', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'ibverbs-providers:amd64', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburi-perl', 'libuv1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'm4', 'make', 'manpages', 'manpages-dev', 'mpi-default-bin', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-snpstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-boot', 'r-cran-brew', 'r-cran-caret', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-ddalpha', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dimred', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-drr', 'r-cran-e1071', 'r-cran-earth', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastica', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-gdata', 'r-cran-generics', 'r-cran-geometry', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-ipred', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modelmetrics', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-runit', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-teachingdemos', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-webutils', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m33.4s DUMP: (Reading database ... 5133 files and directories currently installed.) Purging configuration files for autoconf (2.69-11) ... dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed dpkg: warning: ignoring request to remove cdbs which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-6 which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed Purging configuration files for dbus (1.12.20-0+deb10u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory Purging configuration files for dirmngr (2.2.12-1+deb10u2) ... Purging configuration files for dpkg-dev (1.19.8) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-6 which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-6 which isn't installed dpkg: warning: ignoring request to remove gcc-7-base which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-6 which isn't installed dpkg: warning: ignoring request to remove gfortran-8 which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed Purging configuration files for gnupg-agent (2.2.12-1+deb10u2) ... dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed dpkg: warning: ignoring request to remove gpg which isn't installed Purging configuration files for gpg-agent (2.2.12-1+deb10u2) ... dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpg-wks-server which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed Purging configuration files for ibverbs-providers:amd64 (22.1-1) ... dpkg: warning: ignoring request to remove icu-devtools which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libasan3 which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libassuan0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove 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request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-fs which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-gdata which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-geometry which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gower which isn't installed dpkg: warning: ignoring request to remove r-cran-gplots which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-gtools which isn't installed dpkg: warning: ignoring request to remove r-cran-hexbin which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltable which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-ipred which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-kernlab which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lava which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-lubridate which isn't installed dpkg: warning: ignoring request to remove r-cran-magic which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mapproj which isn't installed dpkg: warning: ignoring request to remove r-cran-maps which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mda which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-mlbench which isn't installed dpkg: warning: ignoring request to remove r-cran-mlmetrics which isn't installed dpkg: warning: ignoring request to remove r-cran-mockery which isn't installed dpkg: warning: ignoring request to remove r-cran-mockr which isn't installed dpkg: warning: ignoring request to remove r-cran-modelmetrics which isn't installed dpkg: warning: ignoring request to remove r-cran-multicore which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-numderiv which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plotmo which isn't installed dpkg: warning: ignoring request to remove r-cran-plotrix which isn't installed dpkg: warning: ignoring request to remove r-cran-pls which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-prodlim which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpproll which isn't installed Purging configuration files for r-cran-rcurl (1.95-4.11-1) ... dpkg: warning: ignoring request to remove r-cran-recipes which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed Purging configuration files for r-cran-rmarkdown (1.11+dfsg-1) ... dpkg: warning: ignoring request to remove r-cran-rmpi which isn't installed dpkg: warning: ignoring request to remove r-cran-robustbase which isn't installed dpkg: warning: ignoring request to remove r-cran-rocr which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-runit which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-sendmailr which isn't installed dpkg: warning: ignoring request to remove r-cran-sfsmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-sp which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-squarem which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-teachingdemos which isn't installed dpkg: warning: ignoring request to remove r-cran-testit which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tikzdevice which isn't installed dpkg: warning: ignoring request to remove r-cran-timedate which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-viridis which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-webutils which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xml2 which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove rename which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.10-1) ... Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... Purging configuration files for x11-common (1:7.7+19) ... Purging configuration files for x11-utils (7.7+4) ... Purging configuration files for x11-xserver-utils (7.7+8) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 2m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--purge', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'bzip2-doc', 'cdbs', 'cpp', 'cpp-6', 'cpp-8', 'dbus', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++', 'g++-6', 'g++-8', 'gcc', 'gcc-6', 'gcc-7-base:amd64', 'gcc-8', 'gfortran', 'gfortran-6', 'gfortran-8', 'gnupg', 'gnupg-agent', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'ibverbs-providers:amd64', 'icu-devtools', 'javascript-common', 'krb5-locales', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libapparmor1:amd64', 'libasan3:amd64', 'libasan5:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libbinutils:amd64', 'libblas-common', 'libblas-dev:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcilkrts5:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-6-dev:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran-6-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libgl1-mesa-glx:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libipc-system-simple-perl', 'libisl15:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.1-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmpc3:amd64', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses-dev:amd64', 'libncurses5:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnpth0:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors4:amd64', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libstdc++-6-dev:amd64', 'libstdc++-8-dev:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtk8.6:amd64', 'libtool', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxc-dxtn-s2tc:amd64', 'libubsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburi-perl', 'libuv1:amd64', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'lsb-base', 'm4', 'make', 'manpages', 'manpages-dev', 'mpi-default-bin', 'netbase', 'node-highlight.js', 'node-normalize.css', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'publicsuffix', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genefilter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-go.db', 'r-bioc-iranges', 'r-bioc-protgenerics', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-snpstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bindr', 'r-cran-bindrcpp', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-boot', 'r-cran-brew', 'r-cran-caret', 'r-cran-catools', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-class', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-ddalpha', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dimred', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-drr', 'r-cran-e1071', 'r-cran-earth', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastica', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-gdata', 'r-cran-generics', 'r-cran-geometry', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-ipred', 'r-cran-iterators', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modelmetrics', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-rpart', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-runit', 'r-cran-scales', 'r-cran-sendmailr', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spatial', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-teachingdemos', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-webutils', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'r-doc-html', 'r-recommended', 'readline-common', 'rename', 'sgml-base', 'shared-mime-info', 'tzdata', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--purge', 'r-bioc-variantannotation'] 2m33.4s DUMP: dpkg: warning: ignoring request to remove r-bioc-variantannotation which isn't installed 2m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--purge', 'r-bioc-variantannotation'] 2m33.4s INFO: Running scripts post_purge 2m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_purge_exceptions'] 2m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_purge_exceptions'] 2m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--purge', '--pending'] 2m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--purge', '--pending'] 2m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--remove', '--pending'] 2m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg', '--remove', '--pending'] 2m33.4s INFO: Running scripts post_test 2m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_test_exceptions'] 2m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'tmp/scripts/post_test_exceptions'] 2m33.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m33.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg-divert', '--list'] 2m33.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'dpkg-divert', '--list'] 2m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'clean'] 2m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprz3y4fko', 'apt-get', 'clean'] 2m33.9s DEBUG: Recording chroot state 2m34.3s INFO: Warning: Package purging left files on system: /etc/ca-certificates.conf.dpkg-old not owned /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-mathjax, fonts-glyphicons-halflings, fonts-font-awesome, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/eot/ owned by: fonts-font-awesome /usr/share/fonts/eot/.uuid not owned /usr/share/fonts/eot/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/eot/font-awesome/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/svg/ owned by: fonts-font-awesome /usr/share/fonts/svg/.uuid not owned /usr/share/fonts/svg/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/svg/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-glyphicons-halflings, fonts-font-awesome, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/woff/ owned by: fonts-font-awesome /usr/share/fonts/woff/.uuid not owned /usr/share/fonts/woff/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/woff/font-awesome/.uuid not owned /usr/share/javascript/ owned by: libjs-twitter-bootstrap-datepicker, libjs-prettify, libjs-modernizr, libjs-mathjax, libjs-json, libjs-jquery-ui, libjs-jquery-selectize.js, libjs-microplugin.js, libjs-sifter.js, libjs-jquery-datatables, libjs-jquery, libjs-highlight.js, libjs-es5-shim, libjs-d3, libjs-bootstrap, javascript-common, fonts-mathjax, fonts-font-awesome, node-normalize.css /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned 2m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/shm'] 2m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/shm'] 2m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/console'] 2m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/console'] 2m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/ptmx'] 2m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/ptmx'] 2m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/pts'] 2m34.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/dev/pts'] 2m34.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/proc'] 2m34.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprz3y4fko/proc'] 2m34.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m34.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprz3y4fko'] 2m34.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmprz3y4fko 2m34.8s INFO: PASS: Upgrading between Debian distributions. 2m34.8s INFO: PASS: All tests. 2m34.8s INFO: piuparts run ends. ret=0 End: 2022-12-16 14:34:28 GMT