Start: 2022-12-16 14:05:45 GMT [stretch] Package: ruby-bio Version: 1.5.0-2 Installed-Size: 3031 Maintainer: Debian Ruby Extras Maintainers Architecture: all Depends: ruby | ruby-interpreter Recommends: blast2, hmmer, mafft, muscle, probcons, sim4, t-coffee Suggests: clustalw, emboss Description: Ruby tools for computational molecular biology Homepage: http://bioruby.org/ Description-md5: 9551e5ebe8c49f9d9485b7f15547f082 Ruby-Versions: all Section: ruby Priority: optional Filename: pool/main/r/ruby-bio/ruby-bio_1.5.0-2_all.deb Size: 700714 MD5sum: 5663504b90d48e9a1e161092c50c2114 SHA256: a8ddf161c996ae5f972b983ece41efbbd36eb00136b5da082f4fa8fc913dec4a [buster] Package: ruby-bio Version: 1.5.2-1 Installed-Size: 3040 Maintainer: Debian Ruby Extras Maintainers Architecture: all Depends: ruby | ruby-interpreter Recommends: blast2, hmmer, mafft, muscle, probcons, sim4, t-coffee Suggests: clustalw, emboss Description: Ruby tools for computational molecular biology Homepage: http://bioruby.org/ Description-md5: 9551e5ebe8c49f9d9485b7f15547f082 Ruby-Versions: all Section: ruby Priority: optional Filename: pool/main/r/ruby-bio/ruby-bio_1.5.2-1_all.deb Size: 700908 MD5sum: 8bda3afb6d3c96287ff04dcef6a409e1 SHA256: 09b2c1955f0a7ec40f599708f7504f48ba77a766e9465ff5acaab8012e8fda01 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt ruby-bio=1.5.2-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt ruby-bio=1.5.2-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpjn_i8rg_ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpjn_i8rg_ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m2.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m2.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/proc'] 0m2.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/proc'] 0m2.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/pts'] 0m2.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/pts'] 0m2.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/ptmx'] 0m2.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/ptmx'] 0m2.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/console'] 0m2.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/console'] 0m2.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/shm'] 0m2.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/shm'] 0m2.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m2.8s DEBUG: Created policy-rc.d and chmodded it. 0m2.8s DEBUG: Created resolv.conf. 0m2.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpjn_i8rg_/tmp/scripts/ 0m2.9s INFO: Running scripts post_chroot_unpack 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'update'] 0m4.1s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'update'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-yf', 'dist-upgrade'] 0m4.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-yf', 'dist-upgrade'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.6s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.6s INFO: Running scripts post_setup 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_minimize'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_minimize'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_zz_backports'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_setup_zz_backports'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.7s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 0m6.0s INFO: Running scripts is_testable 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/is_testable_uninstallable'] 0m6.0s INFO: Running scripts pre_test 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_test_root_password'] 0m6.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_test_root_password'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'show', '--no-all-versions', 'ruby-bio'] 0m6.3s DUMP: Package: ruby-bio Version: 1.5.0-2 Installed-Size: 3031 Maintainer: Debian Ruby Extras Maintainers Architecture: all Depends: ruby | ruby-interpreter Recommends: blast2, hmmer, mafft, muscle, probcons, sim4, t-coffee Suggests: clustalw, emboss Description-en: Ruby tools for computational molecular biology BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language. Design philosophy of the BioRuby library is KISS (keep it simple, stupid) to maximize the usability and the efficiency for biologists as a daily tool. The project was started in Japan and supported by University of Tokyo (Human Genome Center), Kyoto University (Bioinformatics Center) and the Open Bio Foundation. Description-md5: 9551e5ebe8c49f9d9485b7f15547f082 Homepage: http://bioruby.org/ Ruby-Versions: all Section: ruby Priority: optional Filename: pool/main/r/ruby-bio/ruby-bio_1.5.0-2_all.deb Size: 700714 MD5sum: 5663504b90d48e9a1e161092c50c2114 SHA256: a8ddf161c996ae5f972b983ece41efbbd36eb00136b5da082f4fa8fc913dec4a 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'show', '--no-all-versions', 'ruby-bio'] 0m6.3s INFO: apt-cache knows about the following packages: ruby-bio 0m6.3s INFO: Running scripts pre_install 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy'] 0m6.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy', 'ruby-bio'] 0m6.4s DUMP: ruby-bio: Installed: (none) Candidate: 1.5.0-2 Version table: 1.5.0-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy', 'ruby-bio'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-y', 'install', 'ruby-bio'] 0m32.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: amap-align blast2 blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libconvert-binhex-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmime-tools-perl libmpfr4 libncurses5 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libossp-uuid-perl libossp-uuid16 libp11-kit0 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libruby2.3 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl1.0.2 libssl1.1 libtask-weaken-perl libtasn1-6 libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft med-config menu mime-support mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase openssl perl perl-modules-5.24 perl-openssl-defaults poa prank probcons proda python python-minimal python2.7 python2.7-minimal rake readline-common rename ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration sgml-base shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xml-core xz-utils zip Suggested packages: blends-doc bzip2-doc clustalx seaview wise gawk-doc hmmer-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl gnutls-bin gpm libdata-dump-perl libcrypt-ssleay-perl uuid libapache2-mod-perl2 libmime-lite-perl libnet-jabber-perl libauthen-ntlm-perl menu-l10n gksu | kde-runtime | ktsuss mustang-testdata perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make probcons-extra python-doc python-tk python2.7-doc binutils binfmt-support readline-doc ri ruby-dev emboss bundler sgml-base-doc boxshade t-coffee-examples pymol rasmol debhelper The following NEW packages will be installed: amap-align blast2 blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libconvert-binhex-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-perl libffi6 libfile-listing-perl libfont-afm-perl libgdbm3 libgfortran3 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpm2 libhogweed4 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmime-tools-perl libmpfr4 libncurses5 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnettle6 libossp-uuid-perl libossp-uuid16 libp11-kit0 libperl5.24 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libruby2.3 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl1.0.2 libssl1.1 libtask-weaken-perl libtasn1-6 libtimedate-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft med-config menu mime-support mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase openssl perl perl-modules-5.24 perl-openssl-defaults poa prank probcons proda python python-minimal python2.7 python2.7-minimal rake readline-common rename ruby ruby-bio ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration sgml-base shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xml-core xz-utils zip 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 71.0 MB of archives. After this operation, 305 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 fonts-lato all 2.0-1 [2684 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libmpfr4 amd64 3.1.5-1 [556 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libsigsegv2 amd64 2.10-5 [28.9 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 gawk amd64 1:4.1.4+dfsg-1 [571 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 sgml-base all 1.29 [14.8 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 xz-utils amd64 5.2.2-1.2+b1 [266 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 amap-align amd64 2.2-6 [129 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb9u1 [3555 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+ amd64 2.6.0-1 [9591 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 ncbi-blast+-legacy all 2.6.0-1 [9604 B] Get:47 http://deb.debian.org/debian stretch/main amd64 blast2 all 1:2.6.0-1 [9084 B] Get:48 http://deb.debian.org/debian stretch/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 blends-common all 0.6.96 [23.3 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 clustalo amd64 1.2.4-1 [263 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 clustalw amd64 2.1+lgpl-5 [286 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 dialign-tx-data all 1.0.2-9 [869 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 dialign-tx amd64 1.0.2-9 [85.7 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 exonerate amd64 2.4.0-2 [1476 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 mummer amd64 3.23+dfsg-2 [809 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 fsa amd64 1.15.9+dfsg-3 [753 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 hmmer amd64 3.1b2+dfsg-5 [1122 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 javascript-common all 11 [6120 B] Get:64 http://deb.debian.org/debian stretch/main amd64 kalign amd64 1:2.03+20110620-3 [99.7 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libclass-inspector-perl all 1.31-1 [18.7 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libfcgi-perl amd64 0.78-2 [38.2 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libglib2.0-data all 2.50.3-2+deb9u2 [2517 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:91 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:92 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libio-stringy-perl all 2.111-2 [61.2 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:100 http://deb.debian.org/debian stretch/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:101 http://deb.debian.org/debian stretch/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libmime-tools-perl all 5.508-1 [212 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b4 [38.3 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b4 [28.7 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libtask-weaken-perl all 1.04-1 [7990 B] Get:107 http://deb.debian.org/debian stretch/main amd64 libxml-parser-perl amd64 2.44-2+b1 [212 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libsoap-lite-perl all 1.20-1 [259 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libxml-sax-expat-perl all 0.40-2 [12.9 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 libxmlrpc-lite-perl all 0.717-1 [26.1 kB] Get:116 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 lynx-common all 2.8.9dev11-1 [1098 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 mafft amd64 7.307-1 [889 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 muscle amd64 1:3.8.31+dfsg-2 [151 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 mustang amd64 3.2.3-1 [113 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 poa amd64 2.0+20060928-4+b1 [45.4 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 prank amd64 0.0.150803-2 [374 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 probcons amd64 1.12-11 [107 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 proda amd64 1.0-10 [60.1 kB] Get:125 http://deb.debian.org/debian stretch/main amd64 rubygems-integration all 1.11 [4994 B] Get:126 http://deb.debian.org/debian stretch/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 ruby-minitest all 5.9.0-1 [51.1 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:129 http://deb.debian.org/debian stretch/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:130 http://deb.debian.org/debian stretch/main amd64 ruby-test-unit all 3.1.7-2 [69.6 kB] Get:131 http://deb.debian.org/debian stretch/main amd64 libruby2.3 amd64 2.3.3-1+deb9u8 [3108 kB] Get:132 http://deb.debian.org/debian stretch/main amd64 ruby2.3 amd64 2.3.3-1+deb9u8 [189 kB] Get:133 http://deb.debian.org/debian stretch/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:134 http://deb.debian.org/debian stretch/main amd64 rake all 10.5.0-2+deb9u1 [49.7 kB] Get:135 http://deb.debian.org/debian stretch/main amd64 rename all 0.20-4 [12.5 kB] Get:136 http://deb.debian.org/debian stretch/main amd64 ruby-bio all 1.5.0-2 [701 kB] Get:137 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:138 http://deb.debian.org/debian stretch/main amd64 sim4 amd64 0.0.20121010-4 [396 kB] Get:139 http://deb.debian.org/debian stretch/main amd64 t-coffee amd64 11.00.8cbe486-5 [1918 kB] Get:140 http://deb.debian.org/debian stretch/main amd64 tm-align amd64 20160521+dfsg-2 [868 kB] Get:141 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:142 http://deb.debian.org/debian stretch/main amd64 xdg-user-dirs amd64 0.15-2+b1 [52.2 kB] Get:143 http://deb.debian.org/debian stretch/main amd64 xml-core all 0.17 [23.2 kB] Get:144 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:145 http://deb.debian.org/debian stretch/main amd64 lynx amd64 2.8.9dev11-1 [632 kB] Get:146 http://deb.debian.org/debian stretch/main amd64 med-config all 3.0.1 [17.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.0 MB in 1s (40.3 MB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../01-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. 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Unpacking libhtml-tree-perl (5.03-2) ... Selecting previously unselected package libhtml-format-perl. Preparing to unpack .../063-libhtml-format-perl_2.12-1_all.deb ... Unpacking libhtml-format-perl (2.12-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../064-libhttp-cookies-perl_6.01-1_all.deb ... Unpacking libhttp-cookies-perl (6.01-1) ... Selecting previously unselected package libhttp-daemon-perl. Preparing to unpack .../065-libhttp-daemon-perl_6.01-1_all.deb ... Unpacking libhttp-daemon-perl (6.01-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../066-libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libio-sessiondata-perl. Preparing to unpack .../067-libio-sessiondata-perl_1.03-1_all.deb ... Unpacking libio-sessiondata-perl (1.03-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. 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Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../074-libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../075-libwww-perl_6.15-1_all.deb ... Unpacking libwww-perl (6.15-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../076-liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../077-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../078-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libmime-tools-perl. Preparing to unpack .../079-libmime-tools-perl_5.508-1_all.deb ... Unpacking libmime-tools-perl (5.508-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../080-libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Selecting previously unselected package libossp-uuid16:amd64. Preparing to unpack .../081-libossp-uuid16_1.6.2-1.5+b4_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Selecting previously unselected package libossp-uuid-perl. Preparing to unpack .../082-libossp-uuid-perl_1.6.2-1.5+b4_amd64.deb ... Unpacking libossp-uuid-perl (1.6.2-1.5+b4) ... Selecting previously unselected package libtask-weaken-perl. Preparing to unpack .../083-libtask-weaken-perl_1.04-1_all.deb ... Unpacking libtask-weaken-perl (1.04-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../084-libxml-parser-perl_2.44-2+b1_amd64.deb ... Unpacking libxml-parser-perl (2.44-2+b1) ... Selecting previously unselected package libsoap-lite-perl. Preparing to unpack .../085-libsoap-lite-perl_1.20-1_all.deb ... Unpacking libsoap-lite-perl (1.20-1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../086-libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../087-libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../088-libxml-sax-perl_0.99+dfsg-2_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../089-libxml-libxml-perl_2.0128+dfsg-1+deb9u1_amd64.deb ... Unpacking libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... Selecting previously unselected package libxml-sax-expat-perl. Preparing to unpack .../090-libxml-sax-expat-perl_0.40-2_all.deb ... Unpacking libxml-sax-expat-perl (0.40-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../091-libxml-simple-perl_2.22-1_all.deb ... Unpacking libxml-simple-perl (2.22-1) ... Selecting previously unselected package libxmlrpc-lite-perl. Preparing to unpack .../092-libxmlrpc-lite-perl_0.717-1_all.deb ... Unpacking libxmlrpc-lite-perl (0.717-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../093-libyaml-0-2_0.1.7-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.7-2) ... Selecting previously unselected package lynx-common. Preparing to unpack .../094-lynx-common_2.8.9dev11-1_all.deb ... Unpacking lynx-common (2.8.9dev11-1) ... Selecting previously unselected package mafft. Preparing to unpack .../095-mafft_7.307-1_amd64.deb ... Unpacking mafft (7.307-1) ... Selecting previously unselected package muscle. Preparing to unpack .../096-muscle_1%3a3.8.31+dfsg-2_amd64.deb ... Unpacking muscle (1:3.8.31+dfsg-2) ... Selecting previously unselected package mustang. Preparing to unpack .../097-mustang_3.2.3-1_amd64.deb ... Unpacking mustang (3.2.3-1) ... Selecting previously unselected package poa. Preparing to unpack .../098-poa_2.0+20060928-4+b1_amd64.deb ... Unpacking poa (2.0+20060928-4+b1) ... Selecting previously unselected package prank. Preparing to unpack .../099-prank_0.0.150803-2_amd64.deb ... Unpacking prank (0.0.150803-2) ... Selecting previously unselected package probcons. Preparing to unpack .../100-probcons_1.12-11_amd64.deb ... Unpacking probcons (1.12-11) ... Selecting previously unselected package proda. Preparing to unpack .../101-proda_1.0-10_amd64.deb ... Unpacking proda (1.0-10) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../102-rubygems-integration_1.11_all.deb ... Unpacking rubygems-integration (1.11) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../103-ruby-did-you-mean_1.0.0-2_all.deb ... Unpacking ruby-did-you-mean (1.0.0-2) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../104-ruby-minitest_5.9.0-1_all.deb ... Unpacking ruby-minitest (5.9.0-1) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../105-ruby-net-telnet_0.1.1-2_all.deb ... Unpacking ruby-net-telnet (0.1.1-2) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../106-ruby-power-assert_0.3.0-1_all.deb ... Unpacking ruby-power-assert (0.3.0-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../107-ruby-test-unit_3.1.7-2_all.deb ... Unpacking ruby-test-unit (3.1.7-2) ... Selecting previously unselected package libruby2.3:amd64. Preparing to unpack .../108-libruby2.3_2.3.3-1+deb9u8_amd64.deb ... Unpacking libruby2.3:amd64 (2.3.3-1+deb9u8) ... Selecting previously unselected package ruby2.3. Preparing to unpack .../109-ruby2.3_2.3.3-1+deb9u8_amd64.deb ... Unpacking ruby2.3 (2.3.3-1+deb9u8) ... Selecting previously unselected package ruby. Preparing to unpack .../110-ruby_1%3a2.3.3_amd64.deb ... Unpacking ruby (1:2.3.3) ... Selecting previously unselected package rake. Preparing to unpack .../111-rake_10.5.0-2+deb9u1_all.deb ... Unpacking rake (10.5.0-2+deb9u1) ... Selecting previously unselected package rename. Preparing to unpack .../112-rename_0.20-4_all.deb ... Unpacking rename (0.20-4) ... Selecting previously unselected package ruby-bio. Preparing to unpack .../113-ruby-bio_1.5.0-2_all.deb ... Unpacking ruby-bio (1.5.0-2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../114-shared-mime-info_1.8-1+deb9u1_amd64.deb ... Unpacking shared-mime-info (1.8-1+deb9u1) ... Selecting previously unselected package sim4. Preparing to unpack .../115-sim4_0.0.20121010-4_amd64.deb ... Unpacking sim4 (0.0.20121010-4) ... Selecting previously unselected package t-coffee. Preparing to unpack .../116-t-coffee_11.00.8cbe486-5_amd64.deb ... Unpacking t-coffee (11.00.8cbe486-5) ... Selecting previously unselected package tm-align. Preparing to unpack .../117-tm-align_20160521+dfsg-2_amd64.deb ... Unpacking tm-align (20160521+dfsg-2) ... Selecting previously unselected package unzip. Preparing to unpack .../118-unzip_6.0-21+deb9u2_amd64.deb ... Unpacking unzip (6.0-21+deb9u2) ... Selecting previously unselected package xdg-user-dirs. Preparing to unpack .../119-xdg-user-dirs_0.15-2+b1_amd64.deb ... Unpacking xdg-user-dirs (0.15-2+b1) ... Selecting previously unselected package xml-core. Preparing to unpack .../120-xml-core_0.17_all.deb ... Unpacking xml-core (0.17) ... Selecting previously unselected package zip. Preparing to unpack .../121-zip_3.0-11+b1_amd64.deb ... Unpacking zip (3.0-11+b1) ... Selecting previously unselected package lynx. Preparing to unpack .../122-lynx_2.8.9dev11-1_amd64.deb ... Unpacking lynx (2.8.9dev11-1) ... Selecting previously unselected package med-config. Preparing to unpack .../123-med-config_3.0.1_all.deb ... Unpacking med-config (3.0.1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libargtable2-0 (13-1) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up prank (0.0.150803-2) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up kalign (1:2.03+20110620-3) ... Setting up clustalo (1.2.4-1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libdivsufsort3:amd64 (2.0.1-2) ... Setting up mime-support (3.60) ... Setting up t-coffee (11.00.8cbe486-5) ... Setting up libgpm2:amd64 (1.20.4-6.2+b1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b4) ... Setting up probcons (1.12-11) ... Setting up unzip (6.0-21+deb9u2) ... Setting up menu (2.1.47+b1) ... Setting up sgml-base (1.29) ... Setting up gawk (1:4.1.4+dfsg-1) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up zip (3.0-11+b1) ... Setting up tm-align (20160521+dfsg-2) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up dialign-tx-data (1.0.2-9) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up fonts-lato (2.0-1) ... Setting up sim4 (0.0.20121010-4) ... Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up amap-align (2.2-6) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb9u1) ... Setting up hmmer (3.1b2+dfsg-5) ... Setting up proda (1.0-10) ... Setting up libglib2.0-data (2.50.3-2+deb9u2) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liburi-perl (1.71-1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up openssl (1.1.0l-1~deb9u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libnet-http-perl (6.12-1) ... Setting up poa (2.0+20060928-4+b1) ... Setting up muscle (1:3.8.31+dfsg-2) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up xml-core (0.17) ... Setting up javascript-common (11) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up ruby-minitest (5.9.0-1) ... Setting up lynx-common (2.8.9dev11-1) ... Setting up mustang (3.2.3-1) ... Setting up clustalw (2.1+lgpl-5) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libfcgi-perl (0.78-2) ... Setting up xdg-user-dirs (0.15-2+b1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libclass-inspector-perl (1.31-1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up netbase (5.4) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up mafft (7.307-1) ... Setting up libio-stringy-perl (2.111-2) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up ruby-test-unit (3.1.7-2) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up perl-openssl-defaults:amd64 (3) ... Setting up mummer (3.23+dfsg-2) ... Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up dialign-tx (1.0.2-9) ... Setting up libio-html-perl (1.001-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b4) ... Setting up exonerate (2.4.0-2) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up file (1:5.30-1+deb9u3) ... Setting up fsa (1.15.9+dfsg-3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up rubygems-integration (1.11) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up python (2.7.13-2) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-date-perl (6.02-1) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-negotiate-perl (6.00-2) ... Setting up lynx (2.8.9dev11-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libhtml-format-perl (2.12-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up ncbi-blast+ (2.6.0-1) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libxml-simple-perl (2.22-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up ncbi-blast+-legacy (2.6.0-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up blast2 (1:2.6.0-1) ... Setting up libmime-tools-perl (5.508-1) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.6.96) ... Setting up med-config (3.0.1) ... Adding group `med' (GID 150) ... Done. Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up ruby2.3 (2.3.3-1+deb9u8) ... Setting up ruby (1:2.3.3) ... Setting up libwww-perl (6.15-1) ... Setting up rake (10.5.0-2+deb9u1) ... Setting up ruby-bio (1.5.0-2) ... Setting up libxml-parser-perl (2.44-2+b1) ... Setting up libruby2.3:amd64 (2.3.3-1+deb9u8) ... Setting up libxml-sax-expat-perl (0.40-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libsoap-lite-perl (1.20-1) ... Setting up libxmlrpc-lite-perl (0.717-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for sgml-base (1.29) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-y', 'install', 'ruby-bio'] 0m32.4s INFO: Running scripts post_install 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_install_exceptions'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_install_exceptions'] 0m32.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 0m33.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 0m33.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpjn_i8rg_ to buster 0m33.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m33.1s INFO: Running scripts pre_distupgrade 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'update'] 0m37.0s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 2s (4868 kB/s) Reading package lists... 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'update'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-yf', 'dist-upgrade'] 1m23.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm3 libgfortran3 libicu57 libmpfr4 libperl5.24 libruby2.3 libssl1.0.2 rename ruby2.3 sgml-base xml-core Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: e2fsprogs-l10n fdisk gcc-8-base libcom-err2 libdata-dump-perl libext2fs2 libgdbm-compat4 libgdbm6 libgfortran5 libgpg-error-l10n libicu63 libidn2-0 liblmdb0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpfr6 libncurses6 libncursesw6 libperl5.28 libpython2-stdlib libruby2.5 libseccomp2 libtinfo6 libtry-tiny-perl libunistring2 libzstd1 perl-modules-5.28 python2 python2-minimal ruby-xmlrpc ruby2.5 The following packages will be upgraded: adduser amap-align apt base-files base-passwd bash blast2 blends-common bsdutils bzip2 ca-certificates clustalo clustalw coreutils dash debconf debian-archive-keyring debianutils dialign-tx dialign-tx-data diffutils dpkg e2fslibs e2fsprogs exonerate file findutils fonts-lato fsa gawk gpgv grep gzip hmmer hostname init-system-helpers kalign libacl1 libapt-pkg5.0 libattr1 libaudit-common libaudit1 libblkid1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libclass-inspector-perl libcomerr2 libdb5.3 libdebconfclient0 libdivsufsort3 libexpat1 libfcgi-perl libfdisk1 libffi6 libgcc1 libgcrypt20 libglib2.0-0 libglib2.0-data libgmp10 libgnutls30 libgomp1 libgpg-error0 libgpm2 libhogweed4 libhtml-parser-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-message-perl libhttp-negotiate-perl libidn11 libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblwp-protocol-https-perl liblz4-1 liblzma5 libmagic-mgc libmagic1 libmime-tools-perl libmount1 libncurses5 libncursesw5 libnet-http-perl libnet-ssleay-perl libnettle6 libossp-uuid-perl libossp-uuid16 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libselinux1 libsemanage-common libsemanage1 libsepol1 libsigsegv2 libsmartcols1 libsoap-lite-perl libsqlite3-0 libss2 libssl1.1 libstdc++6 libsystemd0 libtask-weaken-perl libtasn1-6 libtimedate-perl libtinfo5 libudev1 liburi-perl libuuid1 libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 login lynx lynx-common mafft med-config mime-support mount multiarch-support mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data ncurses-base ncurses-bin netbase openssl passwd perl perl-base poa prank probcons proda python python-minimal python2.7 python2.7-minimal rake readline-common rename ruby ruby-bio ruby-did-you-mean ruby-minitest ruby-power-assert ruby-test-unit rubygems-integration sed sensible-utils shared-mime-info sim4 sysvinit-utils t-coffee tar tm-align ucf unzip util-linux xdg-user-dirs xml-core xz-utils zlib1g 187 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 126 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:4 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:7 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:10 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:22 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:26 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:33 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:37 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:38 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:41 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:42 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:45 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:46 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:47 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:50 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:51 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:52 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:53 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:57 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:58 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:59 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:60 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:61 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:62 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:69 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:70 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:71 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:72 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:73 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+deb10u1 [308 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libfcgi-perl amd64 0.78-2+b3 [39.0 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b7 [28.7 kB] Get:81 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:85 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:86 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:92 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:93 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:96 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libhttp-daemon-perl all 6.01-3 [16.6 kB] Get:103 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:104 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:105 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:107 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:108 http://deb.debian.org/debian buster/main amd64 libxmlrpc-lite-perl all 0.717-2 [22.3 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libclass-inspector-perl all 1.32-1 [19.1 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libmime-tools-perl all 5.509-1 [212 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b7 [38.1 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libtask-weaken-perl all 1.06-1 [9252 B] Get:114 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libsoap-lite-perl all 1.27-1 [258 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:118 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:120 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:121 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libncurses5 amd64 6.1+20181013-2+deb10u2 [96.2 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:125 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:126 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:127 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:128 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:129 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:130 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:133 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:135 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:136 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:137 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:140 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:141 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:143 http://deb.debian.org/debian buster/main amd64 gawk amd64 1:4.2.1+dfsg-1 [660 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:147 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:148 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:151 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:152 http://deb.debian.org/debian buster/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-1 [131 kB] Get:153 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:155 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:159 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:160 http://deb.debian.org/debian buster/main amd64 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] Get:161 http://deb.debian.org/debian buster/main amd64 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] Get:162 http://deb.debian.org/debian buster/main amd64 blends-common all 0.7.2 [24.7 kB] Get:163 http://deb.debian.org/debian buster/main amd64 clustalo amd64 1.2.4-2 [265 kB] Get:164 http://deb.debian.org/debian buster/main amd64 clustalw amd64 2.1+lgpl-6 [282 kB] Get:165 http://deb.debian.org/debian buster/main amd64 dialign-tx amd64 1.0.2-12 [76.9 kB] Get:166 http://deb.debian.org/debian buster/main amd64 dialign-tx-data all 1.0.2-12 [869 kB] Get:167 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:168 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:169 http://deb.debian.org/debian buster/main amd64 exonerate amd64 2.4.0-4 [1544 kB] Get:170 http://deb.debian.org/debian buster/main amd64 mummer amd64 3.23+dfsg-4 [809 kB] Get:171 http://deb.debian.org/debian buster/main amd64 fsa amd64 1.15.9+dfsg-4 [740 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get:173 http://deb.debian.org/debian buster/main amd64 hmmer amd64 3.2.1+dfsg-1 [1169 kB] Get:174 http://deb.debian.org/debian buster/main amd64 kalign amd64 1:2.03+20110620-5 [92.9 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libdata-dump-perl all 1.23-1 [29.5 kB] Get:177 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:178 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:182 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:184 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:185 http://deb.debian.org/debian buster/main amd64 rubygems-integration all 1.11+deb10u1 [5212 B] Get:186 http://deb.debian.org/debian buster/main amd64 ruby2.5 amd64 2.5.5-3+deb10u4 [400 kB] Get:187 http://deb.debian.org/debian buster/main amd64 ruby amd64 1:2.5.1 [11.3 kB] Get:188 http://deb.debian.org/debian buster/main amd64 rake all 12.3.1-3+deb10u1 [67.1 kB] Get:189 http://deb.debian.org/debian buster/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get:190 http://deb.debian.org/debian buster/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get:191 http://deb.debian.org/debian buster/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get:192 http://deb.debian.org/debian buster/main amd64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get:193 http://deb.debian.org/debian buster/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:195 http://deb.debian.org/debian buster/main amd64 libruby2.5 amd64 2.5.5-3+deb10u4 [3442 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:197 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get:198 http://deb.debian.org/debian buster/main amd64 libxml-sax-expat-perl all 0.51-1 [12.0 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:200 http://deb.debian.org/debian buster/main amd64 lynx-common all 2.8.9rel.1-3+deb10u1 [1212 kB] Get:201 http://deb.debian.org/debian buster/main amd64 lynx amd64 2.8.9rel.1-3+deb10u1 [642 kB] Get:202 http://deb.debian.org/debian buster/main amd64 mafft amd64 7.407-2 [999 kB] Get:203 http://deb.debian.org/debian buster/main amd64 med-config all 3.3 [18.7 kB] Get:204 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:205 http://deb.debian.org/debian buster/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get:206 http://deb.debian.org/debian buster/main amd64 mustang amd64 3.2.3-3 [105 kB] Get:207 http://deb.debian.org/debian buster/main amd64 poa amd64 2.0+20060928-7 [53.0 kB] Get:208 http://deb.debian.org/debian buster/main amd64 prank amd64 0.0.170427+dfsg-2 [375 kB] Get:209 http://deb.debian.org/debian buster/main amd64 probcons amd64 1.12-12 [116 kB] Get:210 http://deb.debian.org/debian buster/main amd64 proda amd64 1.0-12 [63.7 kB] Get:211 http://deb.debian.org/debian buster/main amd64 rename all 1.10-1 [17.2 kB] Get:212 http://deb.debian.org/debian buster/main amd64 ruby-bio all 1.5.2-1 [701 kB] Get:213 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get:214 http://deb.debian.org/debian buster/main amd64 sim4 amd64 0.0.20121010-5 [396 kB] Get:215 http://deb.debian.org/debian buster/main amd64 t-coffee amd64 12.00.7fb08c2-4 [1520 kB] Get:216 http://deb.debian.org/debian buster/main amd64 tm-align amd64 20170708+dfsg-2 [871 kB] Get:217 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:218 http://deb.debian.org/debian buster/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:219 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 5s (18.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../base-files_10.3+deb10u13_amd64.deb ... Unpacking base-files (10.3+deb10u13) over (9.9+deb9u13) ... Setting up base-files (10.3+deb10u13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12678 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Setting up libc-bin (2.28-10+deb10u1) ... Updating /etc/nsswitch.conf to current default. Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12678 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.3.0-6_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-6) ... Setting up gcc-8-base:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.3.0-6_amd64.deb ... Unpacking libgcc1:amd64 (1:8.3.0-6) over (1:6.3.0-18+deb9u1) ... Setting up libgcc1:amd64 (1:8.3.0-6) ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12694 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6.1_amd64.deb ... Unpacking debianutils (4.8.6.1) over (4.8.1.1) ... Setting up debianutils (4.8.6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12694 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-4_amd64.deb ... Unpacking bash (5.0-4) over (4.4-5) ... Setting up bash (5.0-4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12695 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.33.1-0.1_amd64.deb ... Unpacking bsdutils (1:2.33.1-0.1) over (1:2.29.2-1+deb9u1) ... Setting up bsdutils (1:2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12695 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3_amd64.deb ... Unpacking coreutils (8.30-3) over (8.26-3) ... Setting up coreutils (8.30-3) ... Selecting previously unselected package libzstd1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12695 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3+deb10u2_amd64.deb ... Unpacking libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... Setting up libzstd1:amd64 (1.3.8+dfsg-3+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12701 files and directories currently installed.) Preparing to unpack .../libnettle6_3.4.1-1+deb10u1_amd64.deb ... Unpacking libnettle6:amd64 (3.4.1-1+deb10u1) over (3.3-1+b2) ... Setting up libnettle6:amd64 (3.4.1-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12702 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.4.1-1+deb10u1_amd64.deb ... Unpacking libhogweed4:amd64 (3.4.1-1+deb10u1) over (3.3-1+b2) ... Setting up libhogweed4:amd64 (3.4.1-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12702 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-4+deb10u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) over (2:6.1.2+dfsg-1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12702 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... Selecting previously unselected package libidn2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12708 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... (Reading database ... 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Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12738 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.6-2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12718 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.4-5+deb10u1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.4-5+deb10u1) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.8.4-5+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12718 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12718 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1+deb10u2_amd64.deb ... Unpacking gpgv (2.2.12-1+deb10u2) over (2.1.18-8~deb9u4) ... Setting up gpgv (2.2.12-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12718 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.3.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (8.3.0-6) over (6.3.0-18+deb9u1) ... Setting up libstdc++6:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12718 files and directories currently installed.) Preparing to unpack .../archives/apt_1.8.2.3_amd64.deb ... Unpacking apt (1.8.2.3) over (1.4.10) ... Preparing to unpack .../libapt-pkg5.0_1.8.2.3_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.8.2.3) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.8.2.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12747 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.3-1+deb10u1_amd64.deb ... Unpacking liblz4-1:amd64 (1.8.3-1+deb10u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (1.8.3-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12746 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.4-1+deb10u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.4-1+deb10u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.4-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12745 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u8_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12745 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u8_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libudev1:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12745 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-6_amd64.deb ... Unpacking tar (1.30+dfsg-6) over (1.29b-1.1) ... Setting up tar (1.30+dfsg-6) ... (Reading database ... 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Unpacking lynx-common (2.8.9rel.1-3+deb10u1) over (2.8.9dev11-1) ... Preparing to unpack .../53-lynx_2.8.9rel.1-3+deb10u1_amd64.deb ... Unpacking lynx (2.8.9rel.1-3+deb10u1) over (2.8.9dev11-1) ... Preparing to unpack .../54-mafft_7.407-2_amd64.deb ... Unpacking mafft (7.407-2) over (7.307-1) ... Preparing to unpack .../55-med-config_3.3_all.deb ... Unpacking med-config (3.3) over (3.0.1) ... Preparing to unpack .../56-multiarch-support_2.28-10+deb10u1_amd64.deb ... Unpacking multiarch-support (2.28-10+deb10u1) over (2.24-11+deb9u4) ... Preparing to unpack .../57-muscle_1%3a3.8.1551-2_amd64.deb ... Unpacking muscle (1:3.8.1551-2) over (1:3.8.31+dfsg-2) ... Preparing to unpack .../58-mustang_3.2.3-3_amd64.deb ... Unpacking mustang (3.2.3-3) over (3.2.3-1) ... Preparing to unpack .../59-poa_2.0+20060928-7_amd64.deb ... Unpacking poa (2.0+20060928-7) over (2.0+20060928-4+b1) ... Preparing to unpack .../60-prank_0.0.170427+dfsg-2_amd64.deb ... Unpacking prank (0.0.170427+dfsg-2) over (0.0.150803-2) ... Preparing to unpack .../61-probcons_1.12-12_amd64.deb ... Unpacking probcons (1.12-12) over (1.12-11) ... Preparing to unpack .../62-proda_1.0-12_amd64.deb ... Unpacking proda (1.0-12) over (1.0-10) ... Preparing to unpack .../63-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) over (0.20-4) ... Preparing to unpack .../64-ruby-bio_1.5.2-1_all.deb ... Unpacking ruby-bio (1.5.2-1) over (1.5.0-2) ... Preparing to unpack .../65-shared-mime-info_1.10-1_amd64.deb ... Unpacking shared-mime-info (1.10-1) over (1.8-1+deb9u1) ... Preparing to unpack .../66-sim4_0.0.20121010-5_amd64.deb ... Unpacking sim4 (0.0.20121010-5) over (0.0.20121010-4) ... Preparing to unpack .../67-t-coffee_12.00.7fb08c2-4_amd64.deb ... Unpacking t-coffee (12.00.7fb08c2-4) over (11.00.8cbe486-5) ... Preparing to unpack .../68-tm-align_20170708+dfsg-2_amd64.deb ... Unpacking tm-align (20170708+dfsg-2) over (20160521+dfsg-2) ... Preparing to unpack .../69-unzip_6.0-23+deb10u2_amd64.deb ... Unpacking unzip (6.0-23+deb10u2) over (6.0-21+deb9u2) ... Preparing to unpack .../70-xdg-user-dirs_0.17-2_amd64.deb ... Unpacking xdg-user-dirs (0.17-2) over (0.15-2+b1) ... dpkg: warning: unable to delete old directory '/etc/X11/Xsession.d': Directory not empty dpkg: warning: unable to delete old directory '/etc/X11': Directory not empty Preparing to unpack .../71-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) over (0.17) ... Setting up perl-modules-5.28 (5.28.1-6+deb10u1) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u4) ... Setting up liblmdb0:amd64 (0.9.22-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Setting up apt (1.8.2.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Setting up fonts-lato (2.0-2) ... Setting up libgpm2:amd64 (1.20.7-5) ... Setting up mime-support (3.62) ... Installing new version of config file /etc/mime.types ... Setting up e2fslibs:amd64 (1.44.5-1+deb10u3) ... Setting up probcons (1.12-12) ... Setting up poa (2.0+20060928-7) ... Setting up xdg-user-dirs (0.17-2) ... Removing obsolete conffile /etc/X11/Xsession.d/60xdg-user-dirs-update ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up e2fsprogs-l10n (1.44.5-1+deb10u3) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up unzip (6.0-23+deb10u2) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up muscle (1:3.8.1551-2) ... Setting up bzip2 (1.0.6-9.2~deb10u1) ... Setting up libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up t-coffee (12.00.7fb08c2-4) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up ruby-minitest (5.11.3-1) ... Setting up kalign (1:2.03+20110620-5) ... Setting up libglib2.0-data (2.58.3-2+deb10u3) ... Setting up dialign-tx-data (1.0.2-12) ... Setting up mustang (3.2.3-3) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up proda (1.0-12) ... Setting up sim4 (0.0.20121010-5) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up xz-utils (5.2.4-1+deb10u1) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up ucf (3.0038+nmu1) ... Setting up lynx-common (2.8.9rel.1-3+deb10u1) ... Installing new version of config file /etc/lynx/lynx.cfg ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up dialign-tx (1.0.2-12) ... Setting up xml-core (0.18+nmu1) ... Setting up clustalw (2.1+lgpl-6) ... Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up netbase (5.6) ... Installing new version of config file /etc/services ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libdivsufsort3:amd64 (2.0.1-4) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up exonerate (2.4.0-4) ... Setting up prank (0.0.170427+dfsg-2) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up gawk (1:4.2.1+dfsg-1) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up clustalo (1.2.4-2) ... Setting up tm-align (20170708+dfsg-2) ... Setting up python2 (2.7.16-1) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up shared-mime-info (1.10-1) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up hmmer (3.2.1+dfsg-1) ... Setting up lynx (2.8.9rel.1-3+deb10u1) ... Setting up python (2.7.16-1) ... Setting up rubygems-integration (1.11+deb10u1) ... Setting up perl (5.28.1-6+deb10u1) ... Removing obsolete conffile /etc/perl/sitecustomize.pl ... Setting up libdata-dump-perl (1.23-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up mummer (3.23+dfsg-4) ... Setting up libfcgi-perl (0.78-2+b3) ... Setting up liburi-perl (1.76-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libnet-ssleay-perl (1.85-2+deb10u1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libtask-weaken-perl (1.06-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b7) ... Setting up libclass-inspector-perl (1.32-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up mafft (7.407-2) ... Setting up libio-stringy-perl (2.111-3) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libnet-http-perl (6.18-1) ... Setting up rename (1.10-1) ... Setting up fsa (1.15.9+dfsg-4) ... Setting up libmime-tools-perl (5.509-1) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhttp-daemon-perl (6.01-3) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up blast2 (1:2.8.1-1+deb10u1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-simple-perl (2.25-1) ... Setting up libwww-perl (6.36-2) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libruby2.5:amd64 (2.5.5-3+deb10u4) ... Setting up libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libsoap-lite-perl (1.27-1) ... Setting up ruby2.5 (2.5.5-3+deb10u4) ... Setting up ruby (1:2.5.1) ... Setting up libxmlrpc-lite-perl (0.717-2) ... Setting up ruby-bio (1.5.2-1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for sgml-base (1.29) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.7.2) ... Setting up med-config (3.3) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-yf', 'dist-upgrade'] 1m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m25.2s DUMP: f6fc0f2636004ef589309651dfd778f4 - 1m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'show', '--no-all-versions', 'ruby-bio'] 1m25.6s DUMP: Package: ruby-bio Version: 1.5.2-1 Installed-Size: 3040 Maintainer: Debian Ruby Extras Maintainers Architecture: all Depends: ruby | ruby-interpreter Recommends: blast2, hmmer, mafft, muscle, probcons, sim4, t-coffee Suggests: clustalw, emboss Description-en: Ruby tools for computational molecular biology BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language. Design philosophy of the BioRuby library is KISS (keep it simple, stupid) to maximize the usability and the efficiency for biologists as a daily tool. The project was started in Japan and supported by University of Tokyo (Human Genome Center), Kyoto University (Bioinformatics Center) and the Open Bio Foundation. Description-md5: 9551e5ebe8c49f9d9485b7f15547f082 Homepage: http://bioruby.org/ Ruby-Versions: all Section: ruby Priority: optional Filename: pool/main/r/ruby-bio/ruby-bio_1.5.2-1_all.deb Size: 700908 MD5sum: 8bda3afb6d3c96287ff04dcef6a409e1 SHA256: 09b2c1955f0a7ec40f599708f7504f48ba77a766e9465ff5acaab8012e8fda01 1m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'show', '--no-all-versions', 'ruby-bio'] 1m25.6s INFO: apt-cache knows about the following packages: ruby-bio 1m25.6s INFO: Running scripts pre_install 1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_database-server'] 1m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_database-server'] 1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_exceptions'] 1m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_exceptions'] 1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_extras'] 1m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_extras'] 1m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture'] 1m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture'] 1m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy'] 1m25.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy'] 1m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy', 'ruby-bio'] 1m25.9s DUMP: ruby-bio: Installed: 1.5.2-1 Candidate: 1.5.2-1 Version table: *** 1.5.2-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy', 'ruby-bio'] 1m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-y', 'install', 'ruby-bio'] 1m26.2s DUMP: Reading package lists... Building dependency tree... Reading state information... ruby-bio is already the newest version (1.5.2-1). The following packages were automatically installed and are no longer required: libgdbm3 libgfortran3 libicu57 libmpfr4 libncurses5 libperl5.24 libruby2.3 libssl1.0.2 rename ruby2.3 sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-y', 'install', 'ruby-bio'] 1m26.2s INFO: Running scripts post_install 1m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_install_exceptions'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_install_exceptions'] 1m26.3s INFO: Running scripts post_distupgrade 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_exceptions'] 1m26.3s DUMP: Normalized /etc/ca-certificates.conf 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_exceptions'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_zz_backports'] 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_distupgrade_zz_backports'] 1m26.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m26.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m26.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m27.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m27.4s INFO: Running scripts pre_install 1m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_database-server'] 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_database-server'] 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_exceptions'] 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_exceptions'] 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_extras'] 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_extras'] 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture'] 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture'] 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy'] 1m27.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy'] 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy', 'ruby-bio'] 1m27.6s DUMP: ruby-bio: Installed: 1.5.2-1 Candidate: 1.5.2-1 Version table: *** 1.5.2-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-cache', 'policy', 'ruby-bio'] 1m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-y', 'install', 'ruby-bio=1.5.2-1'] 1m28.0s DUMP: Reading package lists... Building dependency tree... Reading state information... ruby-bio is already the newest version (1.5.2-1). The following packages were automatically installed and are no longer required: libgdbm3 libgfortran3 libicu57 libmpfr4 libncurses5 libperl5.24 libruby2.3 libssl1.0.2 rename ruby2.3 sgml-base xml-core Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', '-y', 'install', 'ruby-bio=1.5.2-1'] 1m28.0s INFO: Running scripts post_install 1m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_install_exceptions'] 1m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_install_exceptions'] 1m28.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m28.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m29.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', '-ac', '--ignore-obsolete'] 1m31.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', '-ac', '--ignore-obsolete'] 1m31.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m31.5s DUMP: 0.15.6 1m31.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m31.5s INFO: Running adequate version 0.15.6 now. 1m31.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'ruby-bio'] 1m31.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'ruby-bio'] 1m31.7s INFO: Running scripts pre_remove 1m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_exceptions'] 1m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/pre_remove_exceptions'] 1m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m35.5s DUMP: install ok installed adduser adduser 3.118 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-1 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed blast2 blast2 1:2.8.1-1+deb10u1 install ok installed blends-common blends-common 0.7.2 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed clustalo clustalo 1.2.4-2 install ok installed clustalw clustalw 2.1+lgpl-6 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed dialign-tx dialign-tx 1.0.2-12 install ok installed dialign-tx-data dialign-tx-data 1.0.2-12 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed exonerate exonerate 2.4.0-4 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fonts-lato fonts-lato 2.0-2 install ok installed fsa fsa 1.15.9+dfsg-4 install ok installed gawk gawk 1:4.2.1+dfsg-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hmmer hmmer 3.2.1+dfsg-1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-5 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libclass-inspector-perl libclass-inspector-perl 1.32-1 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-4 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfcgi-perl libfcgi-perl 0.78-2+b3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libglib2.0-data libglib2.0-data 2.58.3-2+deb10u3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.04-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-3 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.060-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmime-tools-perl libmime-tools-perl 5.509-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpfr4:amd64 libmpfr4 3.1.5-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libncurses5:amd64 libncurses5 6.1+20181013-2+deb10u2 install ok installed libncurses6:amd64 libncurses6 6.1+20181013-2+deb10u2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnet-http-perl libnet-http-perl 6.18-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.85-2+deb10u1 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b7 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b7 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libruby2.3:amd64 libruby2.3 2.3.3-1+deb9u8 install ok installed libruby2.5:amd64 libruby2.5 2.5.5-3+deb10u4 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb10u1 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwww-perl libwww-perl 6.36-2 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-4 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-1 install ok installed libxml-sax-perl libxml-sax-perl 1.00+dfsg-1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed lynx lynx 2.8.9rel.1-3+deb10u1 install ok installed lynx-common lynx-common 2.8.9rel.1-3+deb10u1 install ok installed mafft mafft 7.407-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed med-config med-config 3.3 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed mummer mummer 3.23+dfsg-4 install ok installed muscle muscle 1:3.8.1551-2 install ok installed mustang mustang 3.2.3-3 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed netbase netbase 5.6 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed poa poa 2.0+20060928-7 install ok installed prank prank 0.0.170427+dfsg-2 install ok installed probcons probcons 1.12-12 install ok installed proda proda 1.0-12 install ok installed python python 2.7.16-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed rake rake 12.3.1-3+deb10u1 install ok installed readline-common readline-common 7.0-5 install ok installed rename rename 1.10-1 install ok installed ruby ruby 1:2.5.1 install ok installed ruby-bio ruby-bio 1.5.2-1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.2.1-1 install ok installed ruby-minitest ruby-minitest 5.11.3-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.1-1 install ok installed ruby-test-unit ruby-test-unit 3.2.8-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.3 ruby2.3 2.3.3-1+deb9u8 install ok installed ruby2.5 ruby2.5 2.5.5-3+deb10u4 install ok installed rubygems-integration rubygems-integration 1.11+deb10u1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed shared-mime-info shared-mime-info 1.10-1 install ok installed sim4 sim4 0.0.20121010-5 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed t-coffee t-coffee 12.00.7fb08c2-4 install ok installed tar tar 1.30+dfsg-6 install ok installed tm-align tm-align 20170708+dfsg-2 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xml-core xml-core 0.18+nmu1 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 1m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'remove', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'ruby-bio'] 1m39.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: amap-align blast2 blends-common bzip2 clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libconvert-binhex-perl libdata-dump-perl libdivsufsort3 libencode-locale-perl libexpat1 libfcgi-perl libfile-listing-perl libfont-afm-perl libgdbm-compat4 libgdbm3 libgdbm6 libgfortran3 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libicu63 libidn11 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmime-tools-perl libmpfr4 libmpfr6 libncurses5 libncurses6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libossp-uuid-perl libossp-uuid16 libperl5.24 libperl5.28 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libruby2.3 libruby2.5 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl1.0.2 libtask-weaken-perl libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft med-config menu mime-support mummer muscle mustang ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase perl perl-modules-5.24 perl-modules-5.28 perl-openssl-defaults poa prank probcons proda python python-minimal python2 python2-minimal python2.7 python2.7-minimal rake readline-common rename ruby ruby-bio ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.3 ruby2.5 rubygems-integration sgml-base shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xml-core xz-utils zip 0 upgraded, 0 newly installed, 155 to remove and 0 not upgraded. After this operation, 405 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15876 files and directories currently installed.) Removing amap-align (2.2+git20080214.600fc29+dfsg-1) ... Removing blast2 (1:2.8.1-1+deb10u1) ... Removing med-config (3.3) ... Removing blends-common (0.7.2) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing clustalo (1.2.4-2) ... Removing clustalw (2.1+lgpl-6) ... Removing dialign-tx (1.0.2-12) ... Removing dialign-tx-data (1.0.2-12) ... Removing fsa (1.15.9+dfsg-4) ... Removing exonerate (2.4.0-4) ... Removing file (1:5.35-4+deb10u2) ... Removing fonts-lato (2.0-2) ... Removing mummer (3.23+dfsg-4) ... Removing gawk (1:4.2.1+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing hmmer (3.2.1+dfsg-1) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-5) ... Removing libargtable2-0 (13-1) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing lynx (2.8.9rel.1-3+deb10u1) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libxmlrpc-lite-perl (0.717-2) ... Removing libsoap-lite-perl (1.27-1) ... Removing libclass-inspector-perl (1.32-1) ... Removing libmime-tools-perl (5.509-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libdata-dump-perl (1.23-1) ... Removing libdivsufsort3:amd64 (2.0.1-4) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-parser-perl (2.44-4) ... Removing ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing python (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing libfcgi-perl (0.78-2+b3) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing rename (1.10-1) ... Removing mafft (7.407-2) ... Removing libmailtools-perl (2.18-1) ... Removing libossp-uuid-perl (1.6.2-1.5+b7) ... Removing ruby-bio (1.5.2-1) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing ruby2.3 (2.3.3-1+deb9u8) ... Removing libruby2.3:amd64 (2.3.3-1+deb9u8) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing tm-align (20170708+dfsg-2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing shared-mime-info (1.10-1) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libglib2.0-data (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libhtml-form-perl (6.03-1) ... Removing libhttp-daemon-perl (6.01-3) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-stringy-perl (2.111-3) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libmpfr4:amd64 (3.1.5-1) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing python2-minimal (2.7.16-1) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libtask-weaken-perl (1.06-1) ... Removing libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-1) ... Removing libxml-sax-base-perl (1.09-1) ... Removing lynx-common (2.8.9rel.1-3+deb10u1) ... Removing menu (2.1.47+b1) ... Removing muscle (1:3.8.1551-2) ... Removing mustang (3.2.3-3) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Removing poa (2.0+20060928-7) ... Removing prank (0.0.170427+dfsg-2) ... Removing probcons (1.12-12) ... Removing proda (1.0-12) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing sim4 (0.0.20121010-5) ... Removing t-coffee (12.00.7fb08c2-4) ... Removing ucf (3.0038+nmu1) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing mime-support (3.62) ... Removing rake (12.3.1-3+deb10u1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing libwww-perl (6.36-2) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.04-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing ruby (1:2.5.1) ... Removing ruby2.5 (2.5.5-3+deb10u4) ... Removing libruby2.5:amd64 (2.5.5-3+deb10u4) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.04-1) ... Removing libio-socket-ssl-perl (2.060-3) ... Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing libnet-http-perl (6.18-1) ... Removing libnet-ssleay-perl (1.85-2+deb10u1) ... Removing libreadline7:amd64 (7.0-5) ... Removing libtry-tiny-perl (0.30-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing netbase (5.6) ... Removing perl-openssl-defaults:amd64 (3) ... Removing readline-common (7.0-5) ... Removing ruby-did-you-mean (1.2.1-1) ... Removing ruby-minitest (5.11.3-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.2.8-1) ... Removing ruby-power-assert (1.1.1-1) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing rubygems-integration (1.11+deb10u1) ... Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing liburi-perl (1.76-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libtimedate-perl (2.3000-2+deb10u1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'remove', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip', 'ruby-bio'] 1m39.5s INFO: Running scripts post_remove 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_remove_exceptions'] 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_remove_exceptions'] 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--purge', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 1m40.0s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed (Reading database ... 5055 files and directories currently installed.) Purging configuration files for blends-common (0.7.2) ... dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-6) ... dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fsa which isn't installed Purging configuration files for gawk (1:4.2.1+dfsg-1) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.35-4+deb10u2) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmpfr4 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libruby2.3 which isn't installed dpkg: warning: ignoring request to remove libruby2.5 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (1.00+dfsg-1) ... dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for lynx (2.8.9rel.1-3+deb10u1) ... Purging configuration files for lynx-common (2.8.9rel.1-3+deb10u1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for med-config (3.3) ... Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Purging configuration files for netbase (5.6) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed dpkg: warning: ignoring request to remove prank which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... dpkg: warning: ignoring request to remove rake which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove rename which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.3 which isn't installed dpkg: warning: ignoring request to remove ruby2.5 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed Purging configuration files for sgml-base (1.29) ... Purging configuration files for shared-mime-info (1.10-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... Purging configuration files for xdg-user-dirs (0.17-2) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--purge', 'amap-align', 'blast2', 'blends-common', 'bzip2', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-perl', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm3:amd64', 'libgdbm6:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libmpfr4:amd64', 'libmpfr6:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libperl5.24:amd64', 'libperl5.28:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libruby2.3:amd64', 'libruby2.5:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.24', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'rake', 'readline-common', 'rename', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.3', 'ruby2.5', 'rubygems-integration', 'sgml-base', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xml-core', 'xz-utils', 'zip'] 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--purge', 'ruby-bio'] 1m40.0s DUMP: dpkg: warning: ignoring request to remove ruby-bio which isn't installed 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--purge', 'ruby-bio'] 1m40.0s INFO: Running scripts post_purge 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_purge_exceptions'] 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_purge_exceptions'] 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--purge', '--pending'] 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--purge', '--pending'] 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--remove', '--pending'] 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg', '--remove', '--pending'] 1m40.0s INFO: Running scripts post_test 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_test_exceptions'] 1m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'tmp/scripts/post_test_exceptions'] 1m40.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m40.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg-divert', '--list'] 1m40.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'dpkg-divert', '--list'] 1m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'clean'] 1m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_', 'apt-get', 'clean'] 1m40.4s DEBUG: Recording chroot state 1m40.8s INFO: Warning: Package purging left files on system: /etc/X11/Xsession.d/ not owned /etc/ca-certificates.conf.dpkg-old not owned 1m41.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/shm'] 1m41.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/shm'] 1m41.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/console'] 1m41.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/console'] 1m41.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/ptmx'] 1m41.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/ptmx'] 1m41.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/pts'] 1m41.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/dev/pts'] 1m41.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/proc'] 1m41.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_/proc'] 1m41.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m41.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjn_i8rg_'] 1m41.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpjn_i8rg_ 1m41.2s INFO: PASS: Upgrading between Debian distributions. 1m41.2s INFO: PASS: All tests. 1m41.2s INFO: piuparts run ends. ret=0 End: 2022-12-16 14:07:27 GMT