Start: 2022-12-08 18:06:57 GMT [stretch] Package: spades Version: 3.9.1+dfsg-1 Installed-Size: 17258 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libhat-trie0, libjemalloc1 (>= 2.1.1), libnlopt0 (>= 2.2.4), libssw0, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), python, python-joblib, python-yaml, bwa, bamtools, samtools Description: genome assembler for single-cell and isolates data sets Homepage: http://bioinf.spbau.ru/en/spades Description-md5: a8af60ccfdd2e159193efb52065bef14 Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, scope::utility, works-with::biological-sequence, works-with::file Section: science Priority: optional Filename: pool/main/s/spades/spades_3.9.1+dfsg-1_amd64.deb Size: 3449736 MD5sum: 7babab4f83d9622eb2503fb257104b32 SHA256: b2212137f2175a8d7e623d9a5d4b94c14c3f88046a91a53e2d34b095d6e3d92f [buster] Package: spades Version: 3.13.0+dfsg2-2 Installed-Size: 23056 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libhat-trie0, libnlopt0 (>= 2.2.4), libssw0, libstdc++6 (>= 6), zlib1g (>= 1:1.2.3.3), python, python-joblib, python-yaml, bwa, bamtools, samtools Description: genome assembler for single-cell and isolates data sets Homepage: http://cab.spbu.ru/software/spades/ Description-md5: a8af60ccfdd2e159193efb52065bef14 Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, scope::utility, works-with::biological-sequence, works-with::file Section: science Priority: optional Filename: pool/main/s/spades/spades_3.13.0+dfsg2-2_amd64.deb Size: 4755188 MD5sum: 4f03853de5a2b271302b8ecaded12e52 SHA256: a38a37cd56b239a55562331a5ed9ddd15170e0584b00adf3f3c59ca4038236d2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt spades=3.13.0+dfsg2-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat --apt spades=3.13.0+dfsg2-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9h5q32il 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9h5q32il 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9h5q32il/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'update'] 0m2.3s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'update'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2buster-rcmd/reference-chroot-metadata.dat 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s INFO: Running scripts pre_test 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'show', '--no-all-versions', 'spades'] 0m4.8s DUMP: Package: spades Version: 3.9.1+dfsg-1 Installed-Size: 17258 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libhat-trie0, libjemalloc1 (>= 2.1.1), libnlopt0 (>= 2.2.4), libssw0, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), python, python-joblib, python-yaml, bwa, bamtools, samtools Description-en: genome assembler for single-cell and isolates data sets The SPAdes ?? St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads. Description-md5: a8af60ccfdd2e159193efb52065bef14 Homepage: http://bioinf.spbau.ru/en/spades Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, scope::utility, works-with::biological-sequence, works-with::file Section: science Priority: optional Filename: pool/main/s/spades/spades_3.9.1+dfsg-1_amd64.deb Size: 3449736 MD5sum: 7babab4f83d9622eb2503fb257104b32 SHA256: b2212137f2175a8d7e623d9a5d4b94c14c3f88046a91a53e2d34b095d6e3d92f 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'show', '--no-all-versions', 'spades'] 0m4.8s INFO: apt-cache knows about the following packages: spades 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy'] 0m4.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy', 'spades'] 0m5.0s DUMP: spades: Installed: (none) Candidate: 3.9.1+dfsg-1 Version table: 3.9.1+dfsg-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy', 'spades'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-y', 'install', 'spades'] 0m16.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bamtools bwa bzip2 ca-certificates file krb5-locales libbamtools2.4.0 libblas-common libblas3 libcurl3-gnutls libexpat1 libffi6 libgfortran3 libgmp10 libgnutls30 libgomp1 libgpm2 libgssapi-krb5-2 libhat-trie0 libhogweed4 libhts1 libidn11 libidn2-0 libjemalloc1 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libncurses5 libnettle6 libnghttp2-14 libnlopt0 libp11-kit0 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libssw0 libtasn1-6 libunistring0 libyaml-0-2 mime-support openssl publicsuffix python python-joblib python-minimal python-numpy python-pkg-resources python-py python-pytest python-simplejson python-yaml python2.7 python2.7-minimal readline-common samtools xz-utils Suggested packages: bzip2-doc gnutls-bin gpm krb5-doc krb5-user libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql python-doc python-tk gcc gfortran python-dev python-nose python-numpy-dbg python-numpy-doc python-setuptools subversion python-pytest-xdist python-mock python2.7-doc binutils binfmt-support readline-doc The following NEW packages will be installed: bamtools bwa bzip2 ca-certificates file krb5-locales libbamtools2.4.0 libblas-common libblas3 libcurl3-gnutls libexpat1 libffi6 libgfortran3 libgmp10 libgnutls30 libgomp1 libgpm2 libgssapi-krb5-2 libhat-trie0 libhogweed4 libhts1 libidn11 libidn2-0 libjemalloc1 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libncurses5 libnettle6 libnghttp2-14 libnlopt0 libp11-kit0 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libssw0 libtasn1-6 libunistring0 libyaml-0-2 mime-support openssl publicsuffix python python-joblib python-minimal python-numpy python-pkg-resources python-py python-pytest python-simplejson python-yaml python2.7 python2.7-minimal readline-common samtools spades xz-utils 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After this operation, 86.7 MB of additional disk space will be used. 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libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 bzip2 amd64 1.0.6-8.1 [47.5 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libmagic-mgc amd64 1:5.30-1+deb9u3 [222 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libmagic1 amd64 1:5.30-1+deb9u3 [111 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 file amd64 1:5.30-1+deb9u3 [64.2 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 krb5-locales all 1.15-1+deb9u1 [93.8 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libgpm2 amd64 1.20.4-6.2+b1 [34.2 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 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stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 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amd64 1.1-1+b1 [16.5 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 python-joblib all 0.10.3+git55-g660fe5d-1 [115 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 python-numpy amd64 1:1.12.1-3 [1936 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 python-pkg-resources all 33.1.1-1 [166 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 python-py all 1.4.32-3 [82.8 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 python-pytest all 3.0.6-1 [184 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 python-simplejson amd64 3.10.0-1 [70.5 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 python-yaml amd64 3.12-1 [119 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 samtools amd64 1.3.1-3 [254 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libjemalloc1 amd64 3.6.0-9.1 [89.8 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 spades amd64 3.9.1+dfsg-1 [3450 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 publicsuffix all 20190415.1030-0+deb9u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.8 MB in 0s (93.5 MB/s) Selecting previously unselected package libpython2.7-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-libpython2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../01-python2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2+deb9u3) ... Selecting previously unselected package python-minimal. 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Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../14-libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../15-libkrb5support0_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../16-libk5crypto3_1.15-1+deb9u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../17-libkrb5-3_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../18-libgssapi-krb5-2_1.15-1+deb9u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libsasl2-modules-db:amd64. 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Preparing to unpack .../24-libbamtools2.4.0_2.4.1+dfsg-1_amd64.deb ... Unpacking libbamtools2.4.0 (2.4.1+dfsg-1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../25-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package bamtools. Preparing to unpack .../26-bamtools_2.4.1+dfsg-1_amd64.deb ... Unpacking bamtools (2.4.1+dfsg-1) ... Selecting previously unselected package bwa. Preparing to unpack .../27-bwa_0.7.15-2+deb9u1_amd64.deb ... Unpacking bwa (0.7.15-2+deb9u1) ... Selecting previously unselected package openssl. Preparing to unpack .../28-openssl_1.1.0l-1~deb9u1_amd64.deb ... Unpacking openssl (1.1.0l-1~deb9u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../29-ca-certificates_20200601~deb9u1_all.deb ... Unpacking ca-certificates (20200601~deb9u1) ... Selecting previously unselected package libblas-common. Preparing to unpack .../30-libblas-common_3.7.0-2_amd64.deb ... Unpacking libblas-common (3.7.0-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../31-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../32-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libblas3. Preparing to unpack .../33-libblas3_3.7.0-2_amd64.deb ... Unpacking libblas3 (3.7.0-2) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../34-libunistring0_0.9.6+really0.9.3-0.1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../35-libidn2-0_0.16-1+deb9u1_amd64.deb ... Unpacking libidn2-0:amd64 (0.16-1+deb9u1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../36-libnghttp2-14_1.18.1-1+deb9u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../37-libpsl5_0.17.0-3_amd64.deb ... Unpacking libpsl5:amd64 (0.17.0-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../38-librtmp1_2.4+20151223.gitfa8646d.1-1+b1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../39-libssh2-1_1.7.0-1+deb9u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.7.0-1+deb9u1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../40-libcurl3-gnutls_7.52.1-5+deb9u10_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../41-libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libhat-trie0:amd64. Preparing to unpack .../42-libhat-trie0_0.0~git25f9e946-2_amd64.deb ... Unpacking libhat-trie0:amd64 (0.0~git25f9e946-2) ... Selecting previously unselected package libhts1:amd64. Preparing to unpack .../43-libhts1_1.3.2-2_amd64.deb ... Unpacking libhts1:amd64 (1.3.2-2) ... Selecting previously unselected package liblapack3. Preparing to unpack .../44-liblapack3_3.7.0-2_amd64.deb ... Unpacking liblapack3 (3.7.0-2) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../45-libncurses5_6.0+20161126-1+deb9u2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Selecting previously unselected package libnlopt0:amd64. Preparing to unpack .../46-libnlopt0_2.4.2+dfsg-2+b2_amd64.deb ... Unpacking libnlopt0:amd64 (2.4.2+dfsg-2+b2) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../47-libsasl2-modules_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libssw0:amd64. Preparing to unpack .../48-libssw0_1.1-1+b1_amd64.deb ... Unpacking libssw0:amd64 (1.1-1+b1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../49-libyaml-0-2_0.1.7-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.1.7-2) ... Selecting previously unselected package python-joblib. Preparing to unpack .../50-python-joblib_0.10.3+git55-g660fe5d-1_all.deb ... Unpacking python-joblib (0.10.3+git55-g660fe5d-1) ... Selecting previously unselected package python-numpy. Preparing to unpack .../51-python-numpy_1%3a1.12.1-3_amd64.deb ... Unpacking python-numpy (1:1.12.1-3) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../52-python-pkg-resources_33.1.1-1_all.deb ... Unpacking python-pkg-resources (33.1.1-1) ... Selecting previously unselected package python-py. Preparing to unpack .../53-python-py_1.4.32-3_all.deb ... Unpacking python-py (1.4.32-3) ... Selecting previously unselected package python-pytest. Preparing to unpack .../54-python-pytest_3.0.6-1_all.deb ... Unpacking python-pytest (3.0.6-1) ... Selecting previously unselected package python-simplejson. Preparing to unpack .../55-python-simplejson_3.10.0-1_amd64.deb ... Unpacking python-simplejson (3.10.0-1) ... Selecting previously unselected package python-yaml. Preparing to unpack .../56-python-yaml_3.12-1_amd64.deb ... Unpacking python-yaml (3.12-1) ... Selecting previously unselected package samtools. Preparing to unpack .../57-samtools_1.3.1-3_amd64.deb ... Unpacking samtools (1.3.1-3) ... Selecting previously unselected package libjemalloc1. Preparing to unpack .../58-libjemalloc1_3.6.0-9.1_amd64.deb ... Unpacking libjemalloc1 (3.6.0-9.1) ... Selecting previously unselected package spades. Preparing to unpack .../59-spades_3.9.1+dfsg-1_amd64.deb ... Unpacking spades (3.9.1+dfsg-1) ... Selecting previously unselected package publicsuffix. Preparing to unpack .../60-publicsuffix_20190415.1030-0+deb9u1_all.deb ... Unpacking publicsuffix (20190415.1030-0+deb9u1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up bwa (0.7.15-2+deb9u1) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up mime-support (3.60) ... Setting up libjemalloc1 (3.6.0-9.1) ... Setting up libgpm2:amd64 (1.20.4-6.2+b1) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up libbamtools2.4.0 (2.4.1+dfsg-1) ... Setting up libssw0:amd64 (1.1-1+b1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libmagic-mgc (1:5.30-1+deb9u3) ... Setting up bzip2 (1.0.6-8.1) ... Setting up libmagic1:amd64 (1:5.30-1+deb9u3) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Setting up krb5-locales (1.15-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up publicsuffix (20190415.1030-0+deb9u1) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up xz-utils (5.2.2-1.2+b1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up libsasl2-modules:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libnlopt0:amd64 (2.4.2+dfsg-2+b2) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libhat-trie0:amd64 (0.0~git25f9e946-2) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up bamtools (2.4.1+dfsg-1) ... Setting up file (1:5.30-1+deb9u3) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up python (2.7.13-2) ... Setting up python-simplejson (3.10.0-1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up python-yaml (3.12-1) ... Setting up python-joblib (0.10.3+git55-g660fe5d-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up python-pkg-resources (33.1.1-1) ... Setting up python-numpy (1:1.12.1-3) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up python-py (1.4.32-3) ... Setting up python-pytest (3.0.6-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up samtools (1.3.1-3) ... Setting up spades (3.9.1+dfsg-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-y', 'install', 'spades'] 0m16.5s INFO: Running scripts post_install 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_install_exceptions'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_install_exceptions'] 0m16.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 0m16.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9h5q32il to buster 0m16.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m16.9s INFO: Running scripts pre_distupgrade 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'update'] 0m20.2s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 2s (6020 kB/s) Reading package lists... 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'update'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-yf', 'dist-upgrade'] 1m18.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libbamtools2.4.0 libblas-common libgfortran3 libhts1 libidn11 libjemalloc1 libunistring0 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 cwltool e2fsprogs-l10n fdisk fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings g++ g++-8 gcc gcc-8 gcc-8-base gdal-data javascript-common libaec0 libarmadillo9 libarpack2 libasan5 libatomic1 libbamtools2.5.1 libbinutils libbrotli1 libc-ares2 libc-dev-bin libc6-dev libcc1-0 libcharls2 libcom-err2 libdap25 libdapclient6v5 libdapserver7v5 libdeflate0 libepsilon1 libext2fs2 libfontconfig1 libfreetype6 libfreexl1 libfyba0 libgcc-8-dev libgdal20 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran5 libgif7 libgpg-error-l10n libhdf4-0-alt libhdf5-103 libhts2 libicu63 libimagequant0 libisl19 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c3 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 liblcms2-2 liblsan0 libltdl7 libmariadb3 libminizip1 libmpc3 libmpdec2 libmpfr6 libmpx2 libncurses6 libncursesw6 libnetcdf13 libnode64 libnspr4 libnss3 libodbc1 libogdi3.2 libopenjp2-7 libpng16-16 libpoppler82 libpopt0 libpq5 libprocps7 libproj13 libpython2-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libseccomp2 libspatialite7 libstdc++-8-dev libsuperlu5 libsz2 libtiff5 libtinfo6 libtsan0 libubsan1 libunistring2 liburiparser1 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libxerces-c3.2 libxml2 libxslt1.1 libzstd1 linux-libc-dev lsb-base manpages manpages-dev mariadb-common mysql-common nodejs nodejs-doc odbcinst odbcinst1debian2 poppler-data procps proj-bin proj-data psmisc python-atomicwrites python-attr python-configparser python-funcsigs python-future python-lz4 python-more-itertools python-pathlib2 python-pluggy python-psutil python-scandir python-six python2 python2-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal tzdata ucf The following packages will be upgraded: adduser apt bamtools base-files base-passwd bash bsdutils bwa bzip2 ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs file findutils gpgv grep gzip hostname init-system-helpers krb5-locales libacl1 libapt-pkg5.0 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbz2-1.0 libc-bin libc6 libcap-ng0 libcomerr2 libcurl3-gnutls libdb5.3 libdebconfclient0 libexpat1 libfdisk1 libffi6 libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgpm2 libgssapi-krb5-2 libhat-trie0 libhogweed4 libidn11 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblz4-1 liblzma5 libmagic-mgc libmagic1 libmount1 libncurses5 libncursesw5 libnettle6 libnghttp2-14 libnlopt0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssh2-1 libssl1.1 libssw0 libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libudev1 libuuid1 libyaml-0-2 login mime-support mount multiarch-support ncurses-base ncurses-bin openssl passwd perl-base publicsuffix python python-joblib python-minimal python-numpy python-pkg-resources python-py python-pytest python-simplejson python-yaml python2.7 python2.7-minimal readline-common samtools sed sensible-utils spades sysvinit-utils tar util-linux xz-utils zlib1g 138 upgraded, 193 newly installed, 0 to remove and 0 not upgraded. Need to get 176 MB of archives. After this operation, 508 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:4 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:7 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:10 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:22 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:26 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:33 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:37 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:38 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:41 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:42 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:45 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:46 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:47 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:50 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:51 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:52 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:53 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:57 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:58 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:59 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:60 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:61 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:62 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:69 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:70 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:71 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:72 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:73 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:74 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:75 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:77 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:78 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libncurses5 amd64 6.1+20181013-2+deb10u2 [96.2 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:82 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:83 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:85 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:86 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:90 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:91 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get:92 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:95 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:99 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:101 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:102 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:103 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:106 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:107 http://deb.debian.org/debian buster/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:109 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:110 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:113 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:115 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:117 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:121 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:122 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:124 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:125 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:126 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:129 http://deb.debian.org/debian buster/main amd64 krb5-locales all 1.17-3+deb10u4 [95.6 kB] Get:130 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:131 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:132 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-3 [154 kB] Get:134 http://deb.debian.org/debian buster/main amd64 bamtools amd64 2.5.1+dfsg-3 [171 kB] Get:135 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:136 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:137 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:138 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:139 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get:140 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:141 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:143 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:145 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:146 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:147 http://deb.debian.org/debian buster/main amd64 python3-typed-ast amd64 1.3.1-1 [138 kB] Get:148 http://deb.debian.org/debian buster/main amd64 python3-mypy-extensions all 0.4.1-1 [5234 B] Get:149 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get:150 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:151 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:152 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:153 http://deb.debian.org/debian buster/main amd64 python3-mypy all 0.670-2 [781 kB] Get:154 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:155 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get:159 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u4 [1163 kB] Get:160 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:161 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get:162 http://deb.debian.org/debian buster/main amd64 python3-isodate all 0.6.0-1 [24.9 kB] Get:163 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:164 http://deb.debian.org/debian buster/main amd64 python3-rdflib all 4.2.2-2 [258 kB] Get:165 http://deb.debian.org/debian buster/main amd64 python3-prov all 1.5.2-1 [94.4 kB] Get:166 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:167 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:168 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:169 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:170 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:171 http://deb.debian.org/debian buster/main amd64 python3-ruamel.yaml amd64 0.15.34-1+b1 [248 kB] Get:172 http://deb.debian.org/debian buster/main amd64 python3-cachecontrol all 0.11.7-1 [15.2 kB] Get:173 http://deb.debian.org/debian buster/main amd64 python3-lockfile all 1:0.12.2-2 [17.1 kB] Get:174 http://deb.debian.org/debian buster/main amd64 python3-mistune all 0.8.4-1 [16.1 kB] Get:175 http://deb.debian.org/debian buster/main amd64 python3-rdflib-jsonld all 0.4.0-4 [12.3 kB] Get:176 http://deb.debian.org/debian buster/main amd64 python3-typing-extensions all 3.7.2-1 [23.0 kB] Get:177 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:178 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:179 http://deb.debian.org/debian buster/main amd64 python3-schema-salad all 3.0.20181206233650-2 [272 kB] Get:180 http://deb.debian.org/debian buster/main amd64 python3-shellescape all 3.4.1-3 [4800 B] Get:181 http://deb.debian.org/debian buster/main amd64 cwltool all 1.0.20181217162649+dfsg-10 [176 kB] Get:182 http://deb.debian.org/debian buster/main amd64 e2fsprogs-l10n all 1.44.5-1+deb10u3 [504 kB] Get:183 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:184 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:185 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:186 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:187 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:188 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:189 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:190 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:191 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:192 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:193 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:195 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:196 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:197 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:198 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:200 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:201 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:202 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:203 http://deb.debian.org/debian buster/main amd64 gdal-data all 2.4.0+dfsg-1 [744 kB] Get:204 http://deb.debian.org/debian buster/main amd64 javascript-common all 11 [6120 B] Get:205 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:206 http://deb.debian.org/debian buster/main amd64 libarpack2 amd64 3.7.0-2 [102 kB] Get:207 http://deb.debian.org/debian buster/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [161 kB] Get:208 http://deb.debian.org/debian buster/main amd64 libarmadillo9 amd64 1:9.200.7+dfsg-1 [88.6 kB] Get:209 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get:210 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get:211 http://deb.debian.org/debian buster/main amd64 libcharls2 amd64 2.0.0+dfsg-1 [64.3 kB] Get:212 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:213 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:214 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:215 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:216 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:217 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:218 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:219 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:220 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:221 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:222 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:223 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:224 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:225 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:226 http://deb.debian.org/debian buster/main amd64 libdap25 amd64 3.20.3-1 [557 kB] Get:227 http://deb.debian.org/debian buster/main amd64 libdapclient6v5 amd64 3.20.3-1 [202 kB] Get:228 http://deb.debian.org/debian buster/main amd64 libdapserver7v5 amd64 3.20.3-1 [131 kB] Get:229 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:230 http://deb.debian.org/debian buster/main amd64 libpopt0 amd64 1.16-12 [49.4 kB] Get:231 http://deb.debian.org/debian buster/main amd64 libepsilon1 amd64 0.9.2+dfsg-4 [42.0 kB] Get:232 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:233 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:234 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:235 http://deb.debian.org/debian buster/main amd64 libfreexl1 amd64 1.0.5-3 [34.1 kB] Get:236 http://deb.debian.org/debian buster/main amd64 libfyba0 amd64 4.1.1-6 [114 kB] Get:237 http://deb.debian.org/debian buster/main amd64 libgeos-3.7.1 amd64 3.7.1-1 [735 kB] Get:238 http://deb.debian.org/debian buster/main amd64 libgeos-c1v5 amd64 3.7.1-1 [299 kB] Get:239 http://deb.debian.org/debian buster/main amd64 proj-data all 5.2.0-1 [6986 kB] Get:240 http://deb.debian.org/debian buster/main amd64 libproj13 amd64 5.2.0-1 [225 kB] Get:241 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:242 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:243 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:244 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:245 http://deb.debian.org/debian buster/main amd64 libgeotiff2 amd64 1.4.3-1 [72.0 kB] Get:246 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get:247 http://deb.debian.org/debian buster/main amd64 libhdf4-0-alt amd64 4.2.13-4 [277 kB] Get:248 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:249 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:250 http://deb.debian.org/debian buster/main amd64 libjson-c3 amd64 0.12.1+ds-2+deb10u1 [27.3 kB] Get:251 http://deb.debian.org/debian buster/main amd64 libminizip1 amd64 1.1-8+b1 [20.4 kB] Get:252 http://deb.debian.org/debian buster/main amd64 liburiparser1 amd64 0.9.1-1+deb10u1 [48.1 kB] Get:253 http://deb.debian.org/debian buster/main amd64 libkmlbase1 amd64 1.3.0-7 [48.9 kB] Get:254 http://deb.debian.org/debian buster/main amd64 libkmldom1 amd64 1.3.0-7 [172 kB] Get:255 http://deb.debian.org/debian buster/main amd64 libkmlengine1 amd64 1.3.0-7 [78.4 kB] Get:256 http://deb.debian.org/debian buster/main amd64 libkmlconvenience1 amd64 1.3.0-7 [50.1 kB] Get:257 http://deb.debian.org/debian buster/main amd64 libkmlregionator1 amd64 1.3.0-7 [25.1 kB] Get:258 http://deb.debian.org/debian buster/main amd64 libkmlxsd1 amd64 1.3.0-7 [34.6 kB] Get:259 http://deb.debian.org/debian buster/main amd64 mysql-common all 5.8+1.0.5 [7324 B] Get:260 http://deb.debian.org/debian buster/main amd64 mariadb-common all 1:10.3.34-0+deb10u1 [33.0 kB] Get:261 http://deb.debian.org/debian buster/main amd64 libmariadb3 amd64 1:10.3.34-0+deb10u1 [173 kB] Get:262 http://deb.debian.org/debian buster/main amd64 libnetcdf13 amd64 1:4.6.2-1 [403 kB] Get:263 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:264 http://deb.debian.org/debian buster/main amd64 libodbc1 amd64 2.3.6-0.1 [223 kB] Get:265 http://deb.debian.org/debian buster/main amd64 libogdi3.2 amd64 3.2.1+ds-4 [241 kB] Get:266 http://deb.debian.org/debian buster/main amd64 libopenjp2-7 amd64 2.3.0-2+deb10u2 [158 kB] Get:267 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:268 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:269 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u5 [1160 kB] Get:270 http://deb.debian.org/debian buster/main amd64 libpoppler82 amd64 0.71.0-5 [1507 kB] Get:271 http://deb.debian.org/debian buster/main amd64 libpq5 amd64 11.16-0+deb10u1 [172 kB] Get:272 http://deb.debian.org/debian buster/main amd64 libqhull7 amd64 2015.2-4 [196 kB] Get:273 http://deb.debian.org/debian buster/main amd64 libspatialite7 amd64 4.3.0a-5+b2 [1256 kB] Get:274 http://deb.debian.org/debian buster/main amd64 libxerces-c3.2 amd64 3.2.2+debian-1+deb10u1 [886 kB] Get:275 http://deb.debian.org/debian buster/main amd64 odbcinst amd64 2.3.6-0.1 [48.4 kB] Get:276 http://deb.debian.org/debian buster/main amd64 odbcinst1debian2 amd64 2.3.6-0.1 [78.1 kB] Get:277 http://deb.debian.org/debian buster/main amd64 libgdal20 amd64 2.4.0+dfsg-1+b1 [6171 kB] Get:278 http://deb.debian.org/debian buster/main amd64 libgpg-error-l10n all 1.35-1 [97.6 kB] Get:279 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:280 http://deb.debian.org/debian buster/main amd64 libhat-trie0 amd64 0.1.2-2 [11.8 kB] Get:281 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get:282 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:283 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:284 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:285 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get:286 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get:287 http://deb.debian.org/debian buster/main amd64 libnlopt0 amd64 2.4.2+dfsg-8+b1 [165 kB] Get:288 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get:289 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get:290 http://deb.debian.org/debian buster/main amd64 libsasl2-modules amd64 2.1.27+dfsg-1+deb10u2 [104 kB] Get:291 http://deb.debian.org/debian buster/main amd64 libssw0 amd64 1.1-2 [16.5 kB] Get:292 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:293 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:294 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:295 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:296 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] Get:297 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get:298 http://deb.debian.org/debian buster/main amd64 nodejs-doc all 10.24.0~dfsg-1~deb10u1 [974 kB] Get:299 http://deb.debian.org/debian buster/main amd64 proj-bin amd64 5.2.0-1 [105 kB] Get:300 http://deb.debian.org/debian buster/main amd64 psmisc amd64 23.2-1+deb10u1 [126 kB] Get:301 http://deb.debian.org/debian buster/main amd64 publicsuffix all 20220811.1734-0+deb10u1 [127 kB] Get:302 http://deb.debian.org/debian buster/main amd64 python-atomicwrites all 1.1.5-2 [6808 B] Get:303 http://deb.debian.org/debian buster/main amd64 python-attr all 18.2.0-1 [37.2 kB] Get:304 http://deb.debian.org/debian buster/main amd64 python-configparser all 3.5.0b2-1 [59.2 kB] Get:305 http://deb.debian.org/debian buster/main amd64 python-funcsigs all 1.0.2-4 [13.7 kB] Get:306 http://deb.debian.org/debian buster/main amd64 python-future all 0.16.0-1 [348 kB] Get:307 http://deb.debian.org/debian buster/main amd64 python-joblib all 0.13.0-2 [190 kB] Get:308 http://deb.debian.org/debian buster/main amd64 python-lz4 amd64 1.1.0+dfsg-1 [24.9 kB] Get:309 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get:310 http://deb.debian.org/debian buster/main amd64 python-more-itertools all 4.2.0-1 [42.3 kB] Get:311 http://deb.debian.org/debian buster/main amd64 python-scandir amd64 1.9.0-2 [18.3 kB] Get:312 http://deb.debian.org/debian buster/main amd64 python-pathlib2 all 2.3.3-1 [18.3 kB] Get:313 http://deb.debian.org/debian buster/main amd64 python-pluggy all 0.8.0-1 [20.5 kB] Get:314 http://deb.debian.org/debian buster/main amd64 python-psutil amd64 5.5.1-1 [166 kB] Get:315 http://deb.debian.org/debian buster/main amd64 python-py all 1.7.0-2 [86.5 kB] Get:316 http://deb.debian.org/debian buster/main amd64 python-pytest all 3.10.1-2 [243 kB] Get:317 http://deb.debian.org/debian buster/main amd64 python-simplejson amd64 3.16.0-1 [72.6 kB] Get:318 http://deb.debian.org/debian buster/main amd64 python-yaml amd64 3.13-2 [127 kB] Get:319 http://deb.debian.org/debian buster/main amd64 python3-soupsieve all 1.8+dfsg-1 [27.6 kB] Get:320 http://deb.debian.org/debian buster/main amd64 python3-bs4 all 4.7.1-1 [94.1 kB] Get:321 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:322 http://deb.debian.org/debian buster/main amd64 python3-gdal amd64 2.4.0+dfsg-1+b1 [601 kB] Get:323 http://deb.debian.org/debian buster/main amd64 python3-webencodings all 0.5.1-1 [10.9 kB] Get:324 http://deb.debian.org/debian buster/main amd64 python3-html5lib all 1.0.1-1 [89.5 kB] Get:325 http://deb.debian.org/debian buster/main amd64 python3-olefile all 0.46-1 [35.9 kB] Get:326 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:327 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:328 http://deb.debian.org/debian buster/main amd64 python3-sparqlwrapper all 1.8.2-0.1 [28.4 kB] Get:329 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get:330 http://deb.debian.org/debian buster/main amd64 samtools amd64 1.9-4 [443 kB] Get:331 http://deb.debian.org/debian buster/main amd64 spades amd64 3.13.0+dfsg2-2 [4755 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 176 MB in 2s (74.8 MB/s) (Reading database ... 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Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7002 files and directories currently installed.) Preparing to unpack .../debconf_1.5.71+deb10u1_all.deb ... Unpacking debconf (1.5.71+deb10u1) over (1.5.61) ... Setting up debconf (1.5.71+deb10u1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6984 files and directories currently installed.) Preparing to unpack .../libsepol1_2.8-1_amd64.deb ... Unpacking libsepol1:amd64 (2.8-1) over (2.6-2) ... Setting up libsepol1:amd64 (2.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6983 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.6-2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6991 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.4-1+deb10u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.4-1+deb10u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.4-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6990 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u8_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6990 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u8_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libudev1:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6990 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-6_amd64.deb ... Unpacking tar (1.30+dfsg-6) over (1.29b-1.1) ... Setting up tar (1.30+dfsg-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6988 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.19.8_amd64.deb ... Unpacking dpkg (1.19.8) over (1.18.25) ... Setting up dpkg (1.19.8) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6986 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-5_amd64.deb ... Unpacking dash (0.5.10.2-5) over (0.5.8-2.4) ... Setting up dash (0.5.10.2-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6992 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fslibs:amd64 (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Selecting previously unselected package libext2fs2:amd64. Preparing to unpack .../libext2fs2_1.44.5-1+deb10u3_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.5-1+deb10u3) ... Setting up libext2fs2:amd64 (1.44.5-1+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6995 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1+deb10u3_amd64.deb ... Unpacking e2fsprogs (1.44.5-1+deb10u3) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.44.5-1+deb10u3) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6978 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20190209-2_amd64.deb ... Unpacking findutils (4.6.0+git+20190209-2) over (4.6.0+git+20161106-2) ... Setting up findutils (4.6.0+git+20190209-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6980 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_amd64.deb ... Unpacking grep (3.3-1) over (2.27-2) ... Setting up grep (3.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6980 files and directories currently installed.) Preparing to unpack .../gzip_1.9-3+deb10u1_amd64.deb ... Unpacking gzip (1.9-3+deb10u1) over (1.6-5+b1) ... Setting up gzip (1.9-3+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6979 files and directories currently installed.) Preparing to unpack .../hostname_3.21_amd64.deb ... Unpacking hostname (3.21) over (3.18+b1) ... Setting up hostname (3.21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6978 files and directories currently installed.) Preparing to unpack .../libuuid1_2.33.1-0.1_amd64.deb ... Unpacking libuuid1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libuuid1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6978 files and directories currently installed.) Preparing to unpack .../libblkid1_2.33.1-0.1_amd64.deb ... Unpacking libblkid1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libblkid1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6978 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.33.1-0.1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libsmartcols1:amd64 (2.33.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6978 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.33.1-0.1_amd64.deb ... Unpacking libfdisk1:amd64 (2.33.1-0.1) over (2.29.2-1+deb9u1) ... Setting up libfdisk1:amd64 (2.33.1-0.1) ... Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6978 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... 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Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 8 18:07:55 UTC 2022. Universal Time is now: Thu Dec 8 18:07:55 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libasan5:amd64 (8.3.0-6) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up libhat-trie0:amd64 (0.1.2-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up libmpfr6:amd64 (4.0.2-1) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up xz-utils (5.2.4-1+deb10u1) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-3) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (8.3.0-6) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up libgeos-c1v5:amd64 (3.7.1-1) ... Setting up libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Setting up libmpx2:amd64 (8.3.0-6) ... Setting up libubsan1:amd64 (8.3.0-6) ... Setting up libgif7:amd64 (5.1.4-3) ... Setting up liburiparser1:amd64 (0.9.1-1+deb10u1) ... Setting up libisl19:amd64 (0.20-2) ... Setting up mount (2.33.1-0.1) ... Setting up libfreexl1:amd64 (1.0.5-3) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up bamtools (2.5.1+dfsg-3) ... Setting up libfyba0:amd64 (4.1.1-6) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libkmlbase1:amd64 (1.3.0-7) ... Setting up libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up libbinutils:amd64 (2.31.1-16) ... Setting up cpp-8 (8.3.0-6) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Setting up libgpg-error-l10n (1.35-1) ... Setting up libssw0:amd64 (1.1-2) ... Setting up readline-common (7.0-5) ... Setting up publicsuffix (20220811.1734-0+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up libcc1-0:amd64 (8.3.0-6) ... Setting up liblsan0:amd64 (8.3.0-6) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libitm1:amd64 (8.3.0-6) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libkmlxsd1:amd64 (1.3.0-7) ... Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Setting up libpopt0:amd64 (1.16-12) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up libkmldom1:amd64 (1.3.0-7) ... Setting up libspatialite7:amd64 (4.3.0a-5+b2) ... Setting up manpages-dev (4.16-2) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libogdi3.2 (3.2.1+ds-4) ... Setting up libkmlengine1:amd64 (1.3.0-7) ... Setting up libkmlconvenience1:amd64 (1.3.0-7) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up libdap25:amd64 (3.20.3-1) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u5) ... Setting up binutils (2.31.1-16) ... Setting up libepsilon1:amd64 (0.9.2+dfsg-4) ... Setting up libdapserver7v5:amd64 (3.20.3-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libgeotiff2:amd64 (1.4.3-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libkmlregionator1:amd64 (1.3.0-7) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libodbc1:amd64 (2.3.6-0.1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up cpp (4:8.3.0-1) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gcc-8 (8.3.0-6) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libarpack2:amd64 (3.7.0-2) ... Setting up libpq5:amd64 (11.16-0+deb10u1) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up libnetcdf13:amd64 (1:4.6.2-1) ... Setting up python3 (3.7.3-1) ... Setting up nodejs (10.24.0~dfsg-1~deb10u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up python2 (2.7.16-1) ... Setting up python3-webencodings (0.5.1-1) ... Setting up python3-psutil (5.5.1-1) ... Setting up gcc (4:8.3.0-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-isodate (0.6.0-1) ... Setting up python3-pil:amd64 (5.4.1-2+deb10u3) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-typing-extensions (3.7.2-1) ... Setting up python3-html5lib (1.0.1-1) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-ruamel.yaml (0.15.34-1+b1) ... Setting up g++-8 (8.3.0-6) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u4) ... Setting up python3-rdflib (4.2.2-2) ... Setting up libdapclient6v5:amd64 (3.20.3-1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up python3-shellescape (3.4.1-3) ... Setting up libarmadillo9 (1:9.200.7+dfsg-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-mistune (0.8.4-1) ... Setting up python3-soupsieve (1.8+dfsg-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up python3-lockfile (1:0.12.2-2) ... Setting up python3-rdflib-jsonld (0.4.0-4) ... Setting up libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Setting up python3-sparqlwrapper (1.8.2-0.1) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up python3-typed-ast (1.3.1-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up python3-mypy-extensions (0.4.1-1) ... Setting up python3-olefile (0.46-1) ... Setting up libpoppler82:amd64 (0.71.0-5) ... Setting up python3-yaml (3.13-2) ... Setting up python-simplejson (3.16.0-1) ... Setting up python-attr (18.2.0-1) ... Setting up python3-networkx (2.2-1) ... Setting up python3-bs4 (4.7.1-1) ... Setting up python3-prov (1.5.2-1) ... Setting up samtools (1.9-4) ... Setting up python-atomicwrites (1.1.5-2) ... Setting up python-six (1.12.0-1) ... Setting up python-more-itertools (4.2.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python-configparser (3.5.0b2-1) ... Setting up python-pluggy (0.8.0-1) ... Setting up python3-requests (2.21.0-1) ... Setting up python3-mypy (0.670-2) ... Setting up python-joblib (0.13.0-2) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python-psutil (5.5.1-1) ... Setting up python-funcsigs (1.0.2-4) ... Setting up g++ (4:8.3.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python-scandir (1.9.0-2) ... Setting up python-yaml (3.13-2) ... Setting up python3-cachecontrol (0.11.7-1) ... Setting up python-future (0.16.0-1) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python-py (1.7.0-2) ... Setting up python3-scipy (1.1.0-7) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python3-schema-salad (3.0.20181206233650-2) ... Setting up python-pathlib2 (2.3.3-1) ... Setting up cwltool (1.0.20181217162649+dfsg-10) ... Setting up python-pytest (3.10.1-2) ... Setting up python-lz4 (1.1.0+dfsg-1) ... Setting up spades (3.13.0+dfsg2-2) ... Setting up odbcinst (2.3.6-0.1) ... Setting up odbcinst1debian2:amd64 (2.3.6-0.1) ... Setting up libgdal20 (2.4.0+dfsg-1+b1) ... Setting up python3-gdal (2.4.0+dfsg-1+b1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-yf', 'dist-upgrade'] 1m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m20.0s DUMP: f6fc0f2636004ef589309651dfd778f4 - 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'show', '--no-all-versions', 'spades'] 1m20.3s DUMP: Package: spades Version: 3.13.0+dfsg2-2 Installed-Size: 23056 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.27), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libhat-trie0, libnlopt0 (>= 2.2.4), libssw0, libstdc++6 (>= 6), zlib1g (>= 1:1.2.3.3), python, python-joblib, python-yaml, bwa, bamtools, samtools Description-en: genome assembler for single-cell and isolates data sets The SPAdes ?? St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads. Description-md5: a8af60ccfdd2e159193efb52065bef14 Homepage: http://cab.spbu.ru/software/spades/ Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::c++, implemented-in::python, interface::commandline, role::program, scope::utility, works-with::biological-sequence, works-with::file Section: science Priority: optional Filename: pool/main/s/spades/spades_3.13.0+dfsg2-2_amd64.deb Size: 4755188 MD5sum: 4f03853de5a2b271302b8ecaded12e52 SHA256: a38a37cd56b239a55562331a5ed9ddd15170e0584b00adf3f3c59ca4038236d2 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'show', '--no-all-versions', 'spades'] 1m20.3s INFO: apt-cache knows about the following packages: spades 1m20.3s INFO: Running scripts pre_install 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_database-server'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_database-server'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_exceptions'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_exceptions'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_extras'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_extras'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy'] 1m20.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy'] 1m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy', 'spades'] 1m20.4s DUMP: spades: Installed: 3.13.0+dfsg2-2 Candidate: 3.13.0+dfsg2-2 Version table: *** 3.13.0+dfsg2-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy', 'spades'] 1m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-y', 'install', 'spades'] 1m20.7s DUMP: Reading package lists... Building dependency tree... Reading state information... spades is already the newest version (3.13.0+dfsg2-2). The following packages were automatically installed and are no longer required: libbamtools2.4.0 libblas-common libgfortran3 libhts1 libidn11 libjemalloc1 libncurses5 libunistring0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-y', 'install', 'spades'] 1m20.7s INFO: Running scripts post_install 1m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_install_exceptions'] 1m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_install_exceptions'] 1m20.7s INFO: Running scripts post_distupgrade 1m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_exceptions'] 1m20.7s DUMP: Normalized /etc/ca-certificates.conf 1m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_exceptions'] 1m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_zz_backports'] 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_distupgrade_zz_backports'] 1m20.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m22.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m23.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m23.7s INFO: Running scripts pre_install 1m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_database-server'] 1m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_database-server'] 1m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_exceptions'] 1m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_exceptions'] 1m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_extras'] 1m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_extras'] 1m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy'] 1m23.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy', 'spades'] 1m23.8s DUMP: spades: Installed: 3.13.0+dfsg2-2 Candidate: 3.13.0+dfsg2-2 Version table: *** 3.13.0+dfsg2-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-cache', 'policy', 'spades'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-y', 'install', 'spades=3.13.0+dfsg2-2'] 1m24.2s DUMP: Reading package lists... Building dependency tree... Reading state information... spades is already the newest version (3.13.0+dfsg2-2). The following packages were automatically installed and are no longer required: libbamtools2.4.0 libblas-common libgfortran3 libhts1 libidn11 libjemalloc1 libncurses5 libunistring0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', '-y', 'install', 'spades=3.13.0+dfsg2-2'] 1m24.2s INFO: Running scripts post_install 1m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_install_exceptions'] 1m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_install_exceptions'] 1m24.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m25.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m26.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', '-ac', '--ignore-obsolete'] 1m29.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', '-ac', '--ignore-obsolete'] 1m29.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m29.0s DUMP: 0.15.6 1m29.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m29.0s INFO: Running adequate version 0.15.6 now. 1m29.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'spades'] 1m29.1s DUMP: spades: py-file-not-bytecompiled /usr/lib/spades/bin/spades_init.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/SeqIO.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/__init__.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/alignment.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/parallel_launcher.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/sam_parser.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/corrector_logic.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/hammer_logic.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/lucigen_nxmate.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/options_storage.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/process_cfg.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/spades_logic.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/support.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/barcode_extraction.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/break_by_coverage.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/generate_quality.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/id_generation.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/launch_options.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/moleculo_filter_contigs.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/moleculo_postprocessing.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/reference_construction.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/string_dist_utils.py 1m29.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'spades'] 1m29.1s ERROR: WARN: Inadequate results from running adequate! spades: py-file-not-bytecompiled /usr/lib/spades/bin/spades_init.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/SeqIO.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/__init__.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/alignment.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/parallel_launcher.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/common/sam_parser.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/corrector_logic.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/hammer_logic.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/lucigen_nxmate.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/options_storage.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/process_cfg.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/spades_logic.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/support.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/barcode_extraction.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/break_by_coverage.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/generate_quality.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/id_generation.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/launch_options.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/moleculo_filter_contigs.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/moleculo_postprocessing.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/reference_construction.py spades: py-file-not-bytecompiled /usr/share/spades/spades_pipeline/truspades/string_dist_utils.py 1m29.1s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 1m29.1s INFO: Running scripts pre_remove 1m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_exceptions'] 1m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/pre_remove_exceptions'] 1m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m33.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed bamtools bamtools 2.5.1+dfsg-3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bwa bwa 0.7.17-3 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed cwltool cwltool 1.0.20181217162649+dfsg-10 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed e2fsprogs-l10n e2fsprogs-l10n 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gdal-data gdal-data 2.4.0+dfsg-1 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed krb5-locales krb5-locales 1.17-3+deb10u4 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libarmadillo9 libarmadillo9 1:9.200.7+dfsg-1 install ok installed libarpack2:amd64 libarpack2 3.7.0-2 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libbamtools2.4.0 libbamtools2.4.0 2.4.1+dfsg-1 install ok installed libbamtools2.5.1:amd64 libbamtools2.5.1 2.5.1+dfsg-3 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.7-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-ares2:amd64 libc-ares2 1.14.0-1+deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcharls2:amd64 libcharls2 2.0.0+dfsg-1 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libdap25:amd64 libdap25 3.20.3-1 install ok installed libdapclient6v5:amd64 libdapclient6v5 3.20.3-1 install ok installed libdapserver7v5:amd64 libdapserver7v5 3.20.3-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdeflate0:amd64 libdeflate0 1.2-1 install ok installed libepsilon1:amd64 libepsilon1 0.9.2+dfsg-4 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfreexl1:amd64 libfreexl1 1.0.5-3 install ok installed libfyba0:amd64 libfyba0 4.1.1-6 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgdal20 libgdal20 2.4.0+dfsg-1+b1 install ok installed libgeos-3.7.1:amd64 libgeos-3.7.1 3.7.1-1 install ok installed libgeos-c1v5:amd64 libgeos-c1v5 3.7.1-1 install ok installed libgeotiff2:amd64 libgeotiff2 1.4.3-1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgif7:amd64 libgif7 5.1.4-3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error-l10n libgpg-error-l10n 1.35-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libhat-trie0:amd64 libhat-trie0 0.1.2-2 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.13-4 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libhts2:amd64 libhts2 1.9-12~deb10u1 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjemalloc1 libjemalloc1 3.6.0-9.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.8.4-1 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1+deb10u1 install ok installed libjson-c3:amd64 libjson-c3 0.12.1+ds-2+deb10u1 install ok installed libjsoncpp1:amd64 libjsoncpp1 1.7.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkmlbase1:amd64 libkmlbase1 1.3.0-7 install ok installed libkmlconvenience1:amd64 libkmlconvenience1 1.3.0-7 install ok installed libkmldom1:amd64 libkmldom1 1.3.0-7 install ok installed libkmlengine1:amd64 libkmlengine1 1.3.0-7 install ok installed libkmlregionator1:amd64 libkmlregionator1 1.3.0-7 install ok installed libkmlxsd1:amd64 libkmlxsd1 1.3.0-7 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmariadb3:amd64 libmariadb3 1:10.3.34-0+deb10u1 install ok installed libminizip1:amd64 libminizip1 1.1-8+b1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncurses5:amd64 libncurses5 6.1+20181013-2+deb10u2 install ok installed libncurses6:amd64 libncurses6 6.1+20181013-2+deb10u2 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnetcdf13:amd64 libnetcdf13 1:4.6.2-1 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libnlopt0:amd64 libnlopt0 2.4.2+dfsg-8+b1 install ok installed libnode64:amd64 libnode64 10.24.0~dfsg-1~deb10u1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss3:amd64 libnss3 2:3.42.1-1+deb10u5 install ok installed libodbc1:amd64 libodbc1 2.3.6-0.1 install ok installed libogdi3.2 libogdi3.2 3.2.1+ds-4 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.3.0-2+deb10u2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpoppler82:amd64 libpoppler82 0.71.0-5 install ok installed libpopt0:amd64 libpopt0 1.16-12 install ok installed libpq5:amd64 libpq5 11.16-0+deb10u1 install ok installed libprocps7:amd64 libprocps7 2:3.3.15-2 install ok installed libproj13:amd64 libproj13 5.2.0-1 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libqhull7:amd64 libqhull7 2015.2-4 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libspatialite7:amd64 libspatialite7 4.3.0a-5+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libssw0:amd64 libssw0 1.1-2 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.1+dfsg1-4 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.1-1+deb10u1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libuv1:amd64 libuv1 1.24.1-1+deb10u1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u1 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u1 install ok installed libxerces-c3.2:amd64 libxerces-c3.2 3.2.2+debian-1+deb10u1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.32-2.2~deb10u1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mariadb-common mariadb-common 1:10.3.34-0+deb10u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed mysql-common mysql-common 5.8+1.0.5 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed nodejs nodejs 10.24.0~dfsg-1~deb10u1 install ok installed nodejs-doc nodejs-doc 10.24.0~dfsg-1~deb10u1 install ok installed odbcinst odbcinst 2.3.6-0.1 install ok installed odbcinst1debian2:amd64 odbcinst1debian2 2.3.6-0.1 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed poppler-data poppler-data 0.4.9-2 install ok installed procps procps 2:3.3.15-2 install ok installed proj-bin proj-bin 5.2.0-1 install ok installed proj-data proj-data 5.2.0-1 install ok installed psmisc psmisc 23.2-1+deb10u1 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb10u1 install ok installed python python 2.7.16-1 install ok installed python-atomicwrites python-atomicwrites 1.1.5-2 install ok installed python-attr python-attr 18.2.0-1 install ok installed python-configparser python-configparser 3.5.0b2-1 install ok installed python-funcsigs python-funcsigs 1.0.2-4 install ok installed python-future python-future 0.16.0-1 install ok installed python-joblib python-joblib 0.13.0-2 install ok installed python-lz4 python-lz4 1.1.0+dfsg-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python-more-itertools python-more-itertools 4.2.0-1 install ok installed python-numpy python-numpy 1:1.16.2-1 install ok installed python-pathlib2 python-pathlib2 2.3.3-1 install ok installed python-pkg-resources python-pkg-resources 40.8.0-1 install ok installed python-pluggy python-pluggy 0.8.0-1 install ok installed python-psutil python-psutil 5.5.1-1 install ok installed python-py python-py 1.7.0-2 install ok installed python-pytest python-pytest 3.10.1-2 install ok installed python-scandir python-scandir 1.9.0-2 install ok installed python-simplejson python-simplejson 3.16.0-1 install ok installed python-six python-six 1.12.0-1 install ok installed python-yaml python-yaml 3.13-2 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-bs4 python3-bs4 4.7.1-1 install ok installed python3-cachecontrol python3-cachecontrol 0.11.7-1 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-gdal python3-gdal 2.4.0+dfsg-1+b1 install ok installed python3-html5lib python3-html5lib 1.0.1-1 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-isodate python3-isodate 0.6.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2 install ok installed python3-lxml:amd64 python3-lxml 4.3.2-1+deb10u4 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-mistune python3-mistune 0.8.4-1 install ok installed python3-mypy python3-mypy 0.670-2 install ok installed python3-mypy-extensions python3-mypy-extensions 0.4.1-1 install ok installed python3-networkx python3-networkx 2.2-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-olefile python3-olefile 0.46-1 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-prov python3-prov 1.5.2-1 install ok installed python3-psutil python3-psutil 5.5.1-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-rdflib python3-rdflib 4.2.2-2 install ok installed python3-rdflib-jsonld python3-rdflib-jsonld 0.4.0-4 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.15.34-1+b1 install ok installed python3-schema-salad python3-schema-salad 3.0.20181206233650-2 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-shellescape python3-shellescape 3.4.1-3 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-soupsieve python3-soupsieve 1.8+dfsg-1 install ok installed python3-sparqlwrapper python3-sparqlwrapper 1.8.2-0.1 install ok installed python3-typed-ast python3-typed-ast 1.3.1-1 install ok installed python3-typing-extensions python3-typing-extensions 3.7.2-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed readline-common readline-common 7.0-5 install ok installed samtools samtools 1.9-4 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed spades spades 3.13.0+dfsg2-2 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 1m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'remove', 'bamtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bwa', 'bzip2', 'cpp', 'cpp-8', 'cwltool', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'g++-', 'g++-8', 'gcc', 'gcc-8', 'gdal-data', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libarmadillo9', 'libarpack2:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcharls2:amd64', 'libcurl3-gnutls:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdeflate0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgdal20', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhat-trie0:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhts1:amd64', 'libhts2:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c3:amd64', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmariadb3:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpq5:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-8-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtiff5:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxerces-c3.2:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mariadb-common', 'mime-support', 'mysql-common', 'nodejs', 'nodejs-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-atomicwrites', 'python-attr', 'python-configparser', 'python-funcsigs', 'python-future', 'python-joblib', 'python-lz4', 'python-minimal', 'python-more-itertools', 'python-numpy', 'python-pathlib2', 'python-pkg-resources', 'python-pluggy', 'python-psutil', 'python-py', 'python-pytest', 'python-scandir', 'python-simplejson', 'python-six', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'readline-common', 'samtools', 'tzdata', 'ucf', 'xz-utils', 'spades'] 1m40.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bamtools binutils binutils-common binutils-x86-64-linux-gnu bwa bzip2 cpp cpp-8 cwltool file fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings g++ g++-8 gcc gcc-8 gdal-data javascript-common krb5-locales libaec0 libarmadillo9 libarpack2 libasan5 libatomic1 libbamtools2.4.0 libbamtools2.5.1 libbinutils libblas-common libblas3 libbrotli1 libc-ares2 libc-dev-bin libc6-dev libcc1-0 libcharls2 libcurl3-gnutls libdap25 libdapclient6v5 libdapserver7v5 libdeflate0 libepsilon1 libexpat1 libfontconfig1 libfreetype6 libfreexl1 libfyba0 libgcc-8-dev libgdal20 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran3 libgfortran5 libgif7 libgomp1 libgssapi-krb5-2 libhat-trie0 libhdf4-0-alt libhdf5-103 libhts1 libhts2 libicu63 libidn11 libimagequant0 libisl19 libitm1 libjbig0 libjemalloc1 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c3 libjsoncpp1 libk5crypto3 libkeyutils1 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblsan0 libltdl7 libmagic-mgc libmagic1 libmariadb3 libminizip1 libmpc3 libmpdec2 libmpfr6 libmpx2 libncurses5 libncurses6 libnetcdf13 libnghttp2-14 libnlopt0 libnode64 libnspr4 libnss3 libodbc1 libogdi3.2 libopenjp2-7 libpng16-16 libpoppler82 libpopt0 libpq5 libprocps7 libproj13 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libspatialite7 libsqlite3-0 libssh2-1 libssw0 libstdc++-8-dev libsuperlu5 libsz2 libtiff5 libtsan0 libubsan1 libunistring0 liburiparser1 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libxerces-c3.2 libxml2 libxslt1.1 libyaml-0-2 linux-libc-dev lsb-base manpages manpages-dev mariadb-common mime-support mysql-common nodejs nodejs-doc odbcinst odbcinst1debian2 poppler-data procps proj-bin proj-data psmisc publicsuffix python python-atomicwrites python-attr python-configparser python-funcsigs python-future python-joblib python-lz4 python-minimal python-more-itertools python-numpy python-pathlib2 python-pkg-resources python-pluggy python-psutil python-py python-pytest python-scandir python-simplejson python-six python-yaml python2 python2-minimal python2.7 python2.7-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal readline-common samtools spades tzdata ucf xz-utils 0 upgraded, 0 newly installed, 244 to remove and 0 not upgraded. After this operation, 569 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23390 files and directories currently installed.) Removing spades (3.13.0+dfsg2-2) ... Removing bamtools (2.5.1+dfsg-3) ... Removing g++ (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing bwa (0.7.17-3) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing cpp (4:8.3.0-1) ... Removing cwltool (1.0.20181217162649+dfsg-10) ... Removing file (1:5.35-4+deb10u2) ... Removing python3-gdal (2.4.0+dfsg-1+b1) ... Removing libgdal20 (2.4.0+dfsg-1+b1) ... Removing libpoppler82:amd64 (0.71.0-5) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing python3-schema-salad (3.0.20181206233650-2) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... Removing g++-8 (8.3.0-6) ... Removing gdal-data (2.4.0+dfsg-1) ... Removing javascript-common (11) ... Removing krb5-locales (1.17-3+deb10u4) ... Removing libnetcdf13:amd64 (1:4.6.2-1) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libarmadillo9 (1:9.200.7+dfsg-1) ... Removing libarpack2:amd64 (3.7.0-2) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing nodejs (10.24.0~dfsg-1~deb10u1) ... Removing libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Removing libbamtools2.4.0 (2.4.1+dfsg-1) ... Removing libbamtools2.5.1:amd64 (2.5.1+dfsg-3) ... Removing libblas-common (3.7.0-2) ... Removing libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Removing python3-scipy (1.1.0-7) ... Removing python3-numpy (1:1.16.2-1) ... Removing python-numpy (1:1.16.2-1) ... Removing libbrotli1:amd64 (1.0.7-2+deb10u1) ... Removing libc-ares2:amd64 (1.14.0-1+deb10u1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libcharls2:amd64 (2.0.0+dfsg-1) ... Removing libhts1:amd64 (1.3.2-2) ... Removing libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Removing libdapserver7v5:amd64 (3.20.3-1) ... Removing libdapclient6v5:amd64 (3.20.3-1) ... Removing libdap25:amd64 (3.20.3-1) ... Removing samtools (1.9-4) ... Removing libhts2:amd64 (1.9-12~deb10u1) ... Removing libdeflate0:amd64 (1.2-1) ... Removing libepsilon1:amd64 (0.9.2+dfsg-4) ... Removing python3-mypy (0.670-2) ... Removing python3-distutils (3.7.3-1) ... Removing python3-sparqlwrapper (1.8.2-0.1) ... Removing python3-ruamel.yaml (0.15.34-1+b1) ... Removing python3-bs4 (4.7.1-1) ... Removing python3-soupsieve (1.8+dfsg-1) ... Removing python-simplejson (3.16.0-1) ... Removing python-pytest (3.10.1-2) ... Removing python-pathlib2 (2.3.3-1) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libspatialite7:amd64 (4.3.0a-5+b2) ... Removing libfreexl1:amd64 (1.0.5-3) ... Removing libfyba0:amd64 (4.1.1-6) ... Removing libgeos-c1v5:amd64 (3.7.1-1) ... Removing libgeos-3.7.1:amd64 (3.7.1-1) ... Removing libgeotiff2:amd64 (1.4.3-1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libgif7:amd64 (5.1.4-3) ... Removing libpq5:amd64 (11.16-0+deb10u1) ... Removing libhat-trie0:amd64 (0.1.2-2) ... Removing libhdf4-0-alt (4.2.13-4) ... Removing python3-prov (1.5.2-1) ... Removing python3-lxml:amd64 (4.3.2-1+deb10u4) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjemalloc1 (3.6.0-9.1) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing python-lz4 (1.1.0+dfsg-1) ... Removing python-future (0.16.0-1) ... Removing python-configparser (3.5.0b2-1) ... Removing libjs-sphinxdoc (1.8.4-1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Removing libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Removing libjsoncpp1:amd64 (1.7.4-3) ... Removing libkmlxsd1:amd64 (1.3.0-7) ... Removing libkmlregionator1:amd64 (1.3.0-7) ... Removing libkmlconvenience1:amd64 (1.3.0-7) ... Removing libkmlengine1:amd64 (1.3.0-7) ... Removing libkmldom1:amd64 (1.3.0-7) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing libodbc1:amd64 (2.3.6-0.1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Removing libncurses5:amd64 (6.1+20181013-2+deb10u2) ... Removing python-joblib (0.13.0-2) ... Removing procps (2:3.3.15-2) ... Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing libnlopt0:amd64 (2.4.2+dfsg-8+b1) ... Removing libnss3:amd64 (2:3.42.1-1+deb10u5) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libogdi3.2 (3.2.1+ds-4) ... Removing libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpopt0:amd64 (1.16-12) ... Removing libprocps7:amd64 (2:3.3.15-2) ... Removing proj-bin (5.2.0-1) ... Removing libproj13:amd64 (5.2.0-1) ... Removing libqhull7:amd64 (2015.2-4) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssw0:amd64 (1.1-2) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libuv1:amd64 (1.24.1-1+deb10u1) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Removing python3-yaml (3.13-2) ... Removing python-yaml (3.13-2) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing lsb-base (10.2019051400) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing mysql-common (5.8+1.0.5) ... Removing nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Removing poppler-data (0.4.9-2) ... Removing proj-data (5.2.0-1) ... Removing psmisc (23.2-1+deb10u1) ... Removing publicsuffix (20220811.1734-0+deb10u1) ... Removing python-atomicwrites (1.1.5-2) ... Removing python-attr (18.2.0-1) ... Removing python-funcsigs (1.0.2-4) ... Removing python-more-itertools (4.2.0-1) ... Removing python-py (1.7.0-2) ... Removing python-pkg-resources (40.8.0-1) ... Removing python-pluggy (0.8.0-1) ... Removing python-psutil (5.5.1-1) ... Removing python-scandir (1.9.0-2) ... Removing python3-cachecontrol (0.11.7-1) ... Removing python3-requests (2.21.0-1) ... Removing python3-certifi (2018.8.24-1) ... Removing python3-chardet (3.0.4-3) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-networkx (2.2-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-html5lib (1.0.1-1) ... Removing python3-idna (2.6-1) ... Removing python3-rdflib-jsonld (0.4.0-4) ... Removing python3-rdflib (4.2.2-2) ... Removing python3-isodate (0.6.0-1) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-lockfile (1:0.12.2-2) ... Removing python3-mistune (0.8.4-1) ... Removing python3-mypy-extensions (0.4.1-1) ... Removing python3-olefile (0.46-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-psutil (5.5.1-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-shellescape (3.4.1-3) ... Removing python3-urllib3 (1.24.1-1) ... Removing python3-six (1.12.0-1) ... Removing python3-typed-ast (1.3.1-1) ... Removing python3-typing-extensions (3.7.2-1) ... Removing python3-webencodings (0.5.1-1) ... Removing tzdata (2021a-0+deb10u6) ... Removing ucf (3.0038+nmu1) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp-8 (8.3.0-6) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing python-six (1.12.0-1) ... Removing python (2.7.16-1) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libkmlbase1:amd64 (1.3.0-7) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libminizip1:amd64 (1.1-8+b1) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (8.3.0-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing liburiparser1:amd64 (0.9.1-1+deb10u1) ... Removing python2-minimal (2.7.16-1) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing mime-support (3.62) ... Removing readline-common (7.0-5) ... Removing odbcinst (2.3.6-0.1) ... Removing odbcinst1debian2:amd64 (2.3.6-0.1) ... Removing libltdl7:amd64 (2.4.6-9) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'remove', 'bamtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bwa', 'bzip2', 'cpp', 'cpp-8', 'cwltool', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'g++-', 'g++-8', 'gcc', 'gcc-8', 'gdal-data', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libarmadillo9', 'libarpack2:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcharls2:amd64', 'libcurl3-gnutls:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdeflate0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgdal20', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhat-trie0:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhts1:amd64', 'libhts2:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c3:amd64', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmariadb3:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpq5:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-8-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtiff5:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxerces-c3.2:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mariadb-common', 'mime-support', 'mysql-common', 'nodejs', 'nodejs-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-atomicwrites', 'python-attr', 'python-configparser', 'python-funcsigs', 'python-future', 'python-joblib', 'python-lz4', 'python-minimal', 'python-more-itertools', 'python-numpy', 'python-pathlib2', 'python-pkg-resources', 'python-pluggy', 'python-psutil', 'python-py', 'python-pytest', 'python-scandir', 'python-simplejson', 'python-six', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'readline-common', 'samtools', 'tzdata', 'ucf', 'xz-utils', 'spades'] 1m40.3s INFO: Running scripts post_remove 1m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_remove_exceptions'] 1m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_remove_exceptions'] 1m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--purge', 'bamtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bwa', 'bzip2', 'cpp', 'cpp-8', 'cwltool', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'g++', 'g++-8', 'gcc', 'gcc-8', 'gdal-data', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libarmadillo9', 'libarpack2:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcharls2:amd64', 'libcurl3-gnutls:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdeflate0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgdal20', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhat-trie0:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhts1:amd64', 'libhts2:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c3:amd64', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmariadb3:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpq5:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-8-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtiff5:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxerces-c3.2:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mariadb-common', 'mime-support', 'mysql-common', 'nodejs', 'nodejs-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-atomicwrites', 'python-attr', 'python-configparser', 'python-funcsigs', 'python-future', 'python-joblib', 'python-lz4', 'python-minimal', 'python-more-itertools', 'python-numpy', 'python-pathlib2', 'python-pkg-resources', 'python-pluggy', 'python-psutil', 'python-py', 'python-pytest', 'python-scandir', 'python-simplejson', 'python-six', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'readline-common', 'samtools', 'tzdata', 'ucf', 'xz-utils'] 1m41.1s DUMP: dpkg: warning: ignoring request to remove bamtools which isn't installed dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed dpkg: warning: ignoring request to remove cwltool which isn't installed dpkg: warning: ignoring request to remove file which isn't installed (Reading database ... 5064 files and directories currently installed.) Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed dpkg: warning: ignoring request to remove gdal-data which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libarmadillo9 which isn't installed dpkg: warning: ignoring request to remove libarpack2 which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.4.0 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcharls2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdap25 which isn't installed dpkg: warning: ignoring request to remove libdapclient6v5 which isn't installed dpkg: warning: ignoring request to remove libdapserver7v5 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libepsilon1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreexl1 which isn't installed dpkg: warning: ignoring request to remove libfyba0 which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgdal20 which isn't installed dpkg: warning: ignoring request to remove libgeos-3.7.1 which isn't installed dpkg: warning: ignoring request to remove libgeos-c1v5 which isn't installed dpkg: warning: ignoring request to remove libgeotiff2 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libhat-trie0 which isn't installed dpkg: warning: ignoring request to remove libhdf4-0-alt which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libhts1 which isn't installed dpkg: warning: ignoring request to remove libhts2 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl19 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjemalloc1 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjson-c3 which isn't installed dpkg: warning: ignoring request to remove libjsoncpp1 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkmlbase1 which isn't installed dpkg: warning: ignoring request to remove libkmlconvenience1 which isn't installed dpkg: warning: ignoring request to remove libkmldom1 which isn't installed dpkg: warning: ignoring request to remove libkmlengine1 which isn't installed dpkg: warning: ignoring request to remove libkmlregionator1 which isn't installed dpkg: warning: ignoring request to remove libkmlxsd1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.35-4+deb10u2) ... dpkg: warning: ignoring request to remove libmariadb3 which isn't installed dpkg: warning: ignoring request to remove libminizip1 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmpx2 which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libnetcdf13 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnode64 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libodbc1 which isn't installed dpkg: warning: ignoring request to remove libogdi3.2 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpoppler82 which isn't installed dpkg: warning: ignoring request to remove libpopt0 which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libprocps7 which isn't installed dpkg: warning: ignoring request to remove libproj13 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull7 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libspatialite7 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-8-dev which isn't installed dpkg: warning: ignoring request to remove libsuperlu5 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove liburiparser1 which isn't installed dpkg: warning: ignoring request to remove libuv1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libxerces-c3.2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for mariadb-common (1:10.3.34-0+deb10u1) ... Purging configuration files for mime-support (3.62) ... Purging configuration files for mysql-common (5.8+1.0.5) ... dpkg: warning: ignoring request to remove nodejs which isn't installed dpkg: warning: ignoring request to remove nodejs-doc which isn't installed Purging configuration files for odbcinst (2.3.6-0.1) ... dpkg: warning: ignoring request to remove odbcinst1debian2 which isn't installed Purging configuration files for poppler-data (0.4.9-2) ... Purging configuration files for procps (2:3.3.15-2) ... dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed Purging configuration files for psmisc (23.2-1+deb10u1) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-atomicwrites which isn't installed dpkg: warning: ignoring request to remove python-attr which isn't installed dpkg: warning: ignoring request to remove python-configparser which isn't installed dpkg: warning: ignoring request to remove python-funcsigs which isn't installed dpkg: warning: ignoring request to remove python-future which isn't installed dpkg: warning: ignoring request to remove python-joblib which isn't installed dpkg: warning: ignoring request to remove python-lz4 which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-more-itertools which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python-pathlib2 which isn't installed dpkg: warning: ignoring request to remove python-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python-pluggy which isn't installed dpkg: warning: ignoring request to remove python-psutil which isn't installed dpkg: warning: ignoring request to remove python-py which isn't installed dpkg: warning: ignoring request to remove python-pytest which isn't installed dpkg: warning: ignoring request to remove python-scandir which isn't installed dpkg: warning: ignoring request to remove python-simplejson which isn't installed dpkg: warning: ignoring request to remove python-six which isn't installed dpkg: warning: ignoring request to remove python-yaml which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gdal which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lockfile which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mistune which isn't installed dpkg: warning: ignoring request to remove python3-mypy which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-rdflib-jsonld which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-shellescape which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-sparqlwrapper which isn't installed dpkg: warning: ignoring request to remove python3-typed-ast which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove samtools which isn't installed Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed 1m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--purge', 'bamtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bwa', 'bzip2', 'cpp', 'cpp-8', 'cwltool', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'g++', 'g++-8', 'gcc', 'gcc-8', 'gdal-data', 'javascript-common', 'krb5-locales', 'libaec0:amd64', 'libarmadillo9', 'libarpack2:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbamtools2.4.0', 'libbamtools2.5.1:amd64', 'libbinutils:amd64', 'libblas-common', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcharls2:amd64', 'libcurl3-gnutls:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdeflate0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgdal20', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhat-trie0:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhts1:amd64', 'libhts2:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjemalloc1', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c3:amd64', 'libjsoncpp1:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmariadb3:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses5:amd64', 'libncurses6:amd64', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpq5:amd64', 'libprocps7:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-8-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtiff5:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libunistring0:amd64', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxerces-c3.2:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mariadb-common', 'mime-support', 'mysql-common', 'nodejs', 'nodejs-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python', 'python-atomicwrites', 'python-attr', 'python-configparser', 'python-funcsigs', 'python-future', 'python-joblib', 'python-lz4', 'python-minimal', 'python-more-itertools', 'python-numpy', 'python-pathlib2', 'python-pkg-resources', 'python-pluggy', 'python-psutil', 'python-py', 'python-pytest', 'python-scandir', 'python-simplejson', 'python-six', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'readline-common', 'samtools', 'tzdata', 'ucf', 'xz-utils'] 1m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--purge', 'spades'] 1m41.1s DUMP: dpkg: warning: ignoring request to remove spades which isn't installed 1m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--purge', 'spades'] 1m41.1s INFO: Running scripts post_purge 1m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_purge_exceptions'] 1m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_purge_exceptions'] 1m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--purge', '--pending'] 1m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--purge', '--pending'] 1m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--remove', '--pending'] 1m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg', '--remove', '--pending'] 1m41.1s INFO: Running scripts post_test 1m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_test_exceptions'] 1m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'tmp/scripts/post_test_exceptions'] 1m41.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m41.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg-divert', '--list'] 1m41.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'dpkg-divert', '--list'] 1m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'clean'] 1m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9h5q32il', 'apt-get', 'clean'] 1m41.6s DEBUG: Recording chroot state 1m42.3s INFO: Warning: Package purging left files on system: /etc/ca-certificates.conf.dpkg-old not owned 1m42.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/shm'] 1m42.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/shm'] 1m42.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/console'] 1m42.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/console'] 1m42.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/ptmx'] 1m42.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/ptmx'] 1m42.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/pts'] 1m42.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/dev/pts'] 1m42.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/proc'] 1m42.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9h5q32il/proc'] 1m42.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m43.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9h5q32il'] 1m43.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9h5q32il 1m43.0s INFO: PASS: Upgrading between Debian distributions. 1m43.0s INFO: PASS: All tests. 1m43.0s INFO: piuparts run ends. ret=0 End: 2022-12-08 18:08:40 GMT