Start: 2023-04-19 09:22:07 GMT [stretch] Package: r-bioc-geneplotter Version: 1.52.0-2 Installed-Size: 1537 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-biobase, r-bioc-biocgenerics, r-cran-lattice, r-bioc-annotate, r-bioc-annotationdbi, r-cran-rcolorbrewer Description: R package of functions for plotting genomic data Homepage: https://bioconductor.org/packages/geneplotter/ Description-md5: 2c0add4008d983f078fba50ad32d266a Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-geneplotter/r-bioc-geneplotter_1.52.0-2_all.deb Size: 1492192 MD5sum: e8c6080c65a2979400b79b21f5c6755a SHA256: a92c92880eac5d09c2c37b130cb8deeabfb9866331af97fa946b64dbb06295e5 [buster] Package: r-bioc-geneplotter Version: 1.60.0-1 Installed-Size: 1592 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-biobase, r-bioc-biocgenerics, r-cran-lattice, r-bioc-annotate, r-bioc-annotationdbi, r-cran-rcolorbrewer Description: R package of functions for plotting genomic data Homepage: https://bioconductor.org/packages/geneplotter/ Description-md5: 2c0add4008d983f078fba50ad32d266a Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-geneplotter/r-bioc-geneplotter_1.60.0-1_all.deb Size: 1548200 MD5sum: 1250f8dac1f9a11f00a070a8b6b62e6d SHA256: d2845096bbcf137ee7fc1dace1b2242ce2bfc08544a78bd916514bc241786ec8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster/reference-chroot-metadata.dat --apt r-bioc-geneplotter=1.60.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d buster -B /srv/piuparts.debian.org/slave/refchroot/stretch2buster/reference-chroot-metadata.dat --apt r-bioc-geneplotter=1.60.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp650efi5u 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp650efi5u 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp650efi5u', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp650efi5u', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp650efi5u/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp650efi5u/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp650efi5u/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'update'] 0m2.9s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-yf', 'dist-upgrade'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s INFO: Running scripts post_setup 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_dummy_users'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2buster/reference-chroot-metadata.dat 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_test_root_password'] 0m4.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_test_root_password'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-geneplotter'] 0m5.0s DUMP: Package: r-bioc-geneplotter Version: 1.52.0-2 Installed-Size: 1537 Maintainer: Debian Med Packaging Team Architecture: all Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-biobase, r-bioc-biocgenerics, r-cran-lattice, r-bioc-annotate, r-bioc-annotationdbi, r-cran-rcolorbrewer Description-en: R package of functions for plotting genomic data geneplotter contains plotting functions for microarrays Description-md5: 2c0add4008d983f078fba50ad32d266a Homepage: https://bioconductor.org/packages/geneplotter/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-geneplotter/r-bioc-geneplotter_1.52.0-2_all.deb Size: 1492192 MD5sum: e8c6080c65a2979400b79b21f5c6755a SHA256: a92c92880eac5d09c2c37b130cb8deeabfb9866331af97fa946b64dbb06295e5 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-geneplotter'] 0m5.0s INFO: apt-cache knows about the following packages: r-bioc-geneplotter 0m5.0s INFO: Running scripts pre_install 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy'] 0m5.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy', 'r-bioc-geneplotter'] 0m5.0s DUMP: r-bioc-geneplotter: Installed: (none) Candidate: 1.52.0-2 Version table: 1.52.0-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy', 'r-bioc-geneplotter'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-y', 'install', 'r-bioc-geneplotter'] 0m32.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.2 libssl1.1 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base openssl r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-iranges r-bioc-s4vectors r-cran-bitops r-cran-dbi r-cran-digest r-cran-lattice r-cran-littler r-cran-memoise r-cran-pkgkitten r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-xml r-cran-xtable readline-common tzdata ucf unzip x11-common xdg-utils zip Suggested packages: gnutls-bin krb5-doc krb5-user tcl8.6 tk8.6 ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-genefilter r-bioc-biostrings r-bioc-go.db r-cran-runit r-bioc-graph r-cran-knitr r-bioc-xvector r-bioc-genomicranges r-bioc-genomicfeatures r-bioc-genomicalignments r-cran-matrix r-bioc-shortread r-cran-data.table r-cran-rmysql r-cran-getopt r-cran-testthat r-cran-inline r-cran-dbitest readline-doc gvfs-bin Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules xml-core r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libbsd0 libcairo2 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.2 libssl1.1 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base openssl r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-geneplotter r-bioc-iranges r-bioc-s4vectors r-cran-bitops r-cran-dbi r-cran-digest r-cran-lattice r-cran-littler r-cran-memoise r-cran-pkgkitten r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-xml r-cran-xtable readline-common tzdata ucf unzip x11-common xdg-utils zip 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 73.9 MB of archives. After this operation, 174 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 x11-common all 1:7.7+19 [251 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libcurl3 amd64 7.52.1-5+deb9u10 [292 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1+b1 [985 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libtk8.6 amd64 8.6.6-1+b1 [754 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 unzip amd64 6.0-21+deb9u2 [172 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 xdg-utils all 1.1.1-1+deb9u2 [71.5 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 r-base-core amd64 3.3.3-1 [21.2 MB] Get:87 http://deb.debian.org/debian stretch/main amd64 r-cran-littler amd64 0.3.1-1 [59.1 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 littler all 0.3.1-1 [11.7 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 r-bioc-biocgenerics all 0.20.0-1 [483 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 r-bioc-biobase amd64 2.34.0-1 [1989 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 r-bioc-s4vectors amd64 0.12.1-2+b1 [1114 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 r-bioc-iranges amd64 2.8.1-1+b1 [1438 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 r-cran-dbi amd64 0.5-1-1 [332 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 r-cran-digest amd64 0.6.11-1 [112 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 r-cran-memoise all 1.0.0-1 [24.4 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 r-cran-pkgkitten all 0.1.4-1 [18.7 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 r-cran-rcpp amd64 0.12.9-1 [2168 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 r-cran-rsqlite amd64 1.1-2-1 [745 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotationdbi all 1.36.1-2 [4190 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 r-cran-xml amd64 3.98-1.5-1 [1652 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 r-cran-xtable all 1:1.8-2-1 [694 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 r-cran-bitops amd64 1.0-6-1 [22.3 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 r-cran-rcurl amd64 1.95-4.8-2 [607 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 r-bioc-annotate amd64 1.52.1+dfsg-1 [1908 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 r-cran-lattice amd64 0.20-34-1 [713 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 r-bioc-geneplotter all 1.52.0-2 [1492 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.9 MB in 7s (9759 kB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../001-libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../002-libfreetype6_2.6.3-3.2+deb9u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../004-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../005-fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../006-libfontconfig1_2.11.0-6.7+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7+b1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../007-fontconfig_2.11.0-6.7+b1_amd64.deb ... Unpacking fontconfig (2.11.0-6.7+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../008-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../009-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../010-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../011-libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../012-libx11-data_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../013-libx11-6_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u1) ... 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Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up unzip (6.0-21+deb9u2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up zip (3.0-11+b1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up lsb-base (9.20161125) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libtcl8.6:amd64 (8.6.6+dfsg-1+b1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1+deb9u2) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libcurl3:amd64 (7.52.1-5+deb9u10) ... Setting up libtk8.6:amd64 (8.6.6-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up r-base-core (3.3.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.1-1) ... Setting up littler (0.3.1-1) ... Setting up r-bioc-biocgenerics (0.20.0-1) ... Setting up r-bioc-biobase (2.34.0-1) ... Setting up r-cran-rcolorbrewer (1.1-2-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-cran-dbi (0.5-1-1) ... Setting up r-cran-pkgkitten (0.1.4-1) ... Setting up r-cran-rcpp (0.12.9-1) ... Setting up r-cran-rcurl (1.95-4.8-2) ... Setting up r-cran-digest (0.6.11-1) ... Setting up r-cran-xtable (1:1.8-2-1) ... Setting up r-cran-memoise (1.0.0-1) ... Setting up r-bioc-s4vectors (0.12.1-2+b1) ... Setting up r-cran-xml (3.98-1.5-1) ... Setting up r-cran-lattice (0.20-34-1) ... Setting up r-cran-rsqlite (1.1-2-1) ... Setting up r-bioc-iranges (2.8.1-1+b1) ... Setting up r-bioc-annotationdbi (1.36.1-2) ... Setting up r-bioc-annotate (1.52.1+dfsg-1) ... Setting up r-bioc-geneplotter (1.52.0-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-y', 'install', 'r-bioc-geneplotter'] 0m32.4s INFO: Running scripts post_install 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_install_exceptions'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_install_exceptions'] 0m32.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 0m32.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 0m32.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp650efi5u to buster 0m32.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m32.9s INFO: Running scripts pre_distupgrade 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_exceptions'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_exceptions'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'update'] 0m37.3s DUMP: Get:1 http://deb.debian.org/debian buster InRelease [122 kB] Get:2 http://deb.debian.org/debian buster/main amd64 Packages [7909 kB] Get:3 http://deb.debian.org/debian buster/main Translation-en [5969 kB] Fetched 14.0 MB in 3s (4274 kB/s) Reading package lists... 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'update'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-yf', 'dist-upgrade'] 1m21.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libblas-common libgfortran3 libicu57 libidn11 libssl1.0.2 libunistring0 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libcurl3 The following NEW packages will be installed: fdisk gcc-8-base libcom-err2 libcurl4 libext2fs2 libfribidi0 libgfortran5 libicu63 libncursesw6 libseccomp2 libtinfo6 libunistring2 libwebp6 libzstd1 r-cran-assertthat r-cran-bit r-cran-bit64 r-cran-blob r-cran-magrittr r-cran-pkgconfig r-cran-prettyunits The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils fontconfig fontconfig-config gpgv grep gzip hostname init-system-helpers libacl1 libapt-pkg5.0 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbsd0 libbz2-1.0 libc-bin libc6 libcairo2 libcap-ng0 libcomerr2 libdatrie1 libdb5.3 libdebconfclient0 libexpat1 libfdisk1 libffi6 libfontconfig1 libfreetype6 libgcc1 libgcrypt20 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libidn11 libidn2-0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblz4-1 liblzma5 libmount1 libncursesw5 libnettle6 libnghttp2-14 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsm6 libsmartcols1 libss2 libssh2-1 libssl1.1 libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff5 libtinfo5 libtk8.6 libudev1 libuuid1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxft2 libxml2 libxss1 libxt6 littler login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl passwd perl-base r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-geneplotter r-bioc-iranges r-bioc-s4vectors r-cran-bitops r-cran-dbi r-cran-digest r-cran-lattice r-cran-littler r-cran-memoise r-cran-pkgkitten r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-xml r-cran-xtable readline-common sed sensible-utils sysvinit-utils tar tzdata ucf unzip util-linux xdg-utils zlib1g 164 upgraded, 21 newly installed, 1 to remove and 0 not upgraded. Need to get 110 MB of archives. After this operation, 62.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 base-files amd64 10.3+deb10u13 [69.9 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libc6 amd64 2.28-10+deb10u1 [2863 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libc-bin amd64 2.28-10+deb10u1 [795 kB] Get:4 http://deb.debian.org/debian buster/main amd64 gcc-8-base amd64 8.3.0-6 [191 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libgcc1 amd64 1:8.3.0-6 [40.6 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u2 [325 kB] Get:7 http://deb.debian.org/debian buster/main amd64 debianutils amd64 4.8.6.1 [100 kB] Get:8 http://deb.debian.org/debian buster/main amd64 bash amd64 5.0-4 [1378 kB] Get:9 http://deb.debian.org/debian buster/main amd64 bsdutils amd64 1:2.33.1-0.1 [121 kB] Get:10 http://deb.debian.org/debian buster/main amd64 coreutils amd64 8.30-3 [2708 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libzstd1 amd64 1.3.8+dfsg-3+deb10u2 [237 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libnettle6 amd64 3.4.1-1+deb10u1 [215 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libhogweed4 amd64 3.4.1-1+deb10u1 [141 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4+deb10u1 [251 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libunistring2 amd64 0.9.10-1 [381 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libidn2-0 amd64 2.0.5-1+deb10u1 [76.7 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libffi6 amd64 3.2.1-9 [20.8 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libp11-kit0 amd64 0.23.15-2+deb10u1 [316 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libtasn1-6 amd64 4.13-3 [51.9 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libgnutls30 amd64 3.6.7-4+deb10u8 [1126 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libseccomp2 amd64 2.3.3-4 [41.4 kB] Get:22 http://deb.debian.org/debian buster/main amd64 debian-archive-keyring all 2019.1+deb10u1 [93.5 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libaudit-common all 1:2.8.4-3 [22.4 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libcap-ng0 amd64 0.7.9-2 [14.3 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libaudit1 amd64 1:2.8.4-3 [57.3 kB] Get:26 http://deb.debian.org/debian buster/main amd64 debconf all 1.5.71+deb10u1 [145 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libpam0g amd64 1.3.1-5 [126 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpcre3 amd64 2:8.39-12 [341 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libselinux1 amd64 2.8-1+b1 [86.9 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libsepol1 amd64 2.8-1 [263 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libsemanage-common all 2.8-2 [17.7 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libsemanage1 amd64 2.8-2 [96.5 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u1 [45.3 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libpam-modules-bin amd64 1.3.1-5 [107 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libpam-modules amd64 1.3.1-5 [309 kB] Get:36 http://deb.debian.org/debian buster/main amd64 passwd amd64 1:4.5-1.1 [1005 kB] Get:37 http://deb.debian.org/debian buster/main amd64 adduser all 3.118 [240 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libgpg-error0 amd64 1.35-1 [71.1 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libgcrypt20 amd64 1.8.4-5+deb10u1 [556 kB] Get:40 http://deb.debian.org/debian buster/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u1 [90.8 kB] Get:41 http://deb.debian.org/debian buster/main amd64 gpgv amd64 2.2.12-1+deb10u2 [584 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libstdc++6 amd64 8.3.0-6 [395 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libapt-pkg5.0 amd64 1.8.2.3 [967 kB] Get:44 http://deb.debian.org/debian buster/main amd64 apt amd64 1.8.2.3 [1418 kB] Get:45 http://deb.debian.org/debian buster/main amd64 liblz4-1 amd64 1.8.3-1+deb10u1 [53.3 kB] Get:46 http://deb.debian.org/debian buster/main amd64 liblzma5 amd64 5.2.4-1+deb10u1 [153 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libsystemd0 amd64 241-7~deb10u8 [331 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libudev1 amd64 241-7~deb10u8 [151 kB] Get:49 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:50 http://deb.debian.org/debian buster/main amd64 tar amd64 1.30+dfsg-6 [780 kB] Get:51 http://deb.debian.org/debian buster/main amd64 dpkg amd64 1.19.8 [2210 kB] Get:52 http://deb.debian.org/debian buster/main amd64 dash amd64 0.5.10.2-5 [112 kB] Get:53 http://deb.debian.org/debian buster/main amd64 diffutils amd64 1:3.7-3 [371 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libcom-err2 amd64 1.44.5-1+deb10u3 [68.4 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libcomerr2 amd64 1.44.5-1+deb10u3 [64.2 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libext2fs2 amd64 1.44.5-1+deb10u3 [221 kB] Get:57 http://deb.debian.org/debian buster/main amd64 e2fslibs amd64 1.44.5-1+deb10u3 [64.2 kB] Get:58 http://deb.debian.org/debian buster/main amd64 e2fsprogs amd64 1.44.5-1+deb10u3 [576 kB] Get:59 http://deb.debian.org/debian buster/main amd64 findutils amd64 4.6.0+git+20190209-2 [684 kB] Get:60 http://deb.debian.org/debian buster/main amd64 grep amd64 3.3-1 [373 kB] Get:61 http://deb.debian.org/debian buster/main amd64 gzip amd64 1.9-3+deb10u1 [128 kB] Get:62 http://deb.debian.org/debian buster/main amd64 hostname amd64 3.21 [14.8 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libuuid1 amd64 2.33.1-0.1 [78.3 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libblkid1 amd64 2.33.1-0.1 [195 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libsmartcols1 amd64 2.33.1-0.1 [150 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libfdisk1 amd64 2.33.1-0.1 [234 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u2 [132 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libmount1 amd64 2.33.1-0.1 [207 kB] Get:69 http://deb.debian.org/debian buster/main amd64 fdisk amd64 2.33.1-0.1 [179 kB] Get:70 http://deb.debian.org/debian buster/main amd64 login amd64 1:4.5-1.1 [751 kB] Get:71 http://deb.debian.org/debian buster/main amd64 util-linux amd64 2.33.1-0.1 [1062 kB] Get:72 http://deb.debian.org/debian buster/main amd64 mount amd64 2.33.1-0.1 [174 kB] Get:73 http://deb.debian.org/debian buster/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u2 [406 kB] Get:74 http://deb.debian.org/debian buster/main amd64 perl-base amd64 5.28.1-6+deb10u1 [1514 kB] Get:75 http://deb.debian.org/debian buster/main amd64 sed amd64 4.7-1 [310 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libdebconfclient0 amd64 0.249 [49.1 kB] Get:77 http://deb.debian.org/debian buster/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:78 http://deb.debian.org/debian buster/main amd64 init-system-helpers all 1.56+nmu1 [46.8 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libtinfo5 amd64 6.1+20181013-2+deb10u2 [321 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libncursesw5 amd64 6.1+20181013-2+deb10u2 [118 kB] Get:81 http://deb.debian.org/debian buster/main amd64 ncurses-base all 6.1+20181013-2+deb10u2 [258 kB] Get:82 http://deb.debian.org/debian buster/main amd64 sysvinit-utils amd64 2.93-8 [78.4 kB] Get:83 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get:84 http://deb.debian.org/debian buster/main amd64 r-cran-memoise all 1.1.0-2 [38.6 kB] Get:85 http://deb.debian.org/debian buster/main amd64 r-bioc-biocgenerics all 0.28.0-2 [644 kB] Get:86 http://deb.debian.org/debian buster/main amd64 r-bioc-iranges amd64 2.16.0-1 [2130 kB] Get:87 http://deb.debian.org/debian buster/main amd64 r-bioc-s4vectors amd64 0.20.1-2 [1815 kB] Get:88 http://deb.debian.org/debian buster/main amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get:89 http://deb.debian.org/debian buster/main amd64 r-cran-bit amd64 1.1-14-1+b1 [221 kB] Get:90 http://deb.debian.org/debian buster/main amd64 r-cran-bit64 amd64 0.9-7-3 [438 kB] Get:91 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:92 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:93 http://deb.debian.org/debian buster/main amd64 r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get:94 http://deb.debian.org/debian buster/main amd64 r-cran-blob all 1.1.1-2 [25.0 kB] Get:95 http://deb.debian.org/debian buster/main amd64 r-cran-dbi all 1.0.0-2 [789 kB] Get:96 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:102 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:103 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get:104 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get:105 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:106 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get:107 http://deb.debian.org/debian buster/main amd64 r-cran-rsqlite amd64 2.1.1-2+b1 [858 kB] Get:108 http://deb.debian.org/debian buster/main amd64 r-cran-bitops amd64 1.0-6-4 [24.3 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.5 [683 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:122 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:124 http://deb.debian.org/debian buster/main amd64 r-cran-rcurl amd64 1.95-4.11-1 [715 kB] Get:125 http://deb.debian.org/debian buster/main amd64 r-bioc-geneplotter all 1.60.0-1 [1548 kB] Get:126 http://deb.debian.org/debian buster/main amd64 r-bioc-annotationdbi all 1.44.0-1 [4629 kB] Get:127 http://deb.debian.org/debian buster/main amd64 r-bioc-biobase amd64 2.42.0-1 [2216 kB] Get:128 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get:129 http://deb.debian.org/debian buster/main amd64 r-bioc-annotate all 1.60.0+dfsg-1 [2102 kB] Get:130 http://deb.debian.org/debian buster/main amd64 r-cran-xml amd64 3.98-1.17-1 [1947 kB] Get:131 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:132 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:134 http://deb.debian.org/debian buster/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get:135 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:136 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:137 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:140 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:143 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:145 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:147 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:152 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:155 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:156 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:159 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:160 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:161 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:162 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:163 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:164 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:166 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:167 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:168 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:169 http://deb.debian.org/debian buster/main amd64 tzdata all 2021a-0+deb10u6 [265 kB] Get:170 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:171 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:174 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:177 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:178 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libpam-runtime all 1.3.1-5 [211 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libattr1 amd64 1:2.4.48-4 [21.3 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libacl1 amd64 2.2.53-4 [30.4 kB] Get:182 http://deb.debian.org/debian buster/main amd64 libss2 amd64 1.44.5-1+deb10u3 [72.9 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:184 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:185 http://deb.debian.org/debian buster/main amd64 multiarch-support amd64 2.28-10+deb10u1 [216 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 110 MB in 11s (9719 kB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11299 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3_amd64.deb ... Unpacking coreutils (8.30-3) over (8.26-3) ... Setting up coreutils (8.30-3) ... Selecting previously unselected package libzstd1:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11306 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-4+deb10u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) over (2:6.1.2+dfsg-1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-4+deb10u1) ... Selecting previously unselected package libunistring2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11306 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-1_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-1) ... Setting up libunistring2:amd64 (0.9.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11312 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.0.5-1+deb10u1_amd64.deb ... Unpacking libidn2-0:amd64 (2.0.5-1+deb10u1) over (0.16-1+deb9u1) ... Setting up libidn2-0:amd64 (2.0.5-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11337 files and directories currently installed.) Preparing to unpack .../libffi6_3.2.1-9_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-9) over (3.2.1-6) ... Setting up libffi6:amd64 (3.2.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11337 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.15-2+deb10u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.15-2+deb10u1) over (0.23.3-2) ... Setting up libp11-kit0:amd64 (0.23.15-2+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11337 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3) over (4.10-1.1+deb9u1) ... Setting up libtasn1-6:amd64 (4.13-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11337 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u8_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u8) over (3.5.8-5+deb9u5) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u8) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-4_amd64.deb ... Unpacking libseccomp2:amd64 (2.3.3-4) ... Setting up libseccomp2:amd64 (2.3.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11344 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2019.1+deb10u1_all.deb ... Unpacking debian-archive-keyring (2019.1+deb10u1) over (2017.5+deb9u1) ... Setting up debian-archive-keyring (2019.1+deb10u1) ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-security-automatic.gpg ... Installing new version of config file /etc/apt/trusted.gpg.d/debian-archive-stretch-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-jessie-stable.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11353 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.4-3_all.deb ... Unpacking libaudit-common (1:2.8.4-3) over (1:2.6.7-2) ... Setting up libaudit-common (1:2.8.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11353 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2) over (0.7.7-3+b1) ... Setting up libcap-ng0:amd64 (0.7.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11352 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.4-3_amd64.deb ... Unpacking libaudit1:amd64 (1:2.8.4-3) over (1:2.6.7-2) ... Setting up libaudit1:amd64 (1:2.8.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11352 files and directories currently installed.) Preparing to unpack .../debconf_1.5.71+deb10u1_all.deb ... Unpacking debconf (1.5.71+deb10u1) over (1.5.61) ... Setting up debconf (1.5.71+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11333 files and directories currently installed.) Preparing to unpack .../libpam0g_1.3.1-5_amd64.deb ... Unpacking libpam0g:amd64 (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam0g:amd64 (1.3.1-5) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11333 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-12_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-12) over (2:8.39-3) ... Setting up libpcre3:amd64 (2:8.39-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11333 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (2.8-1+b1) over (2.6-3+b3) ... Setting up libselinux1:amd64 (2.8-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11332 files and directories currently installed.) Preparing to unpack .../libsepol1_2.8-1_amd64.deb ... Unpacking libsepol1:amd64 (2.8-1) over (2.6-2) ... Setting up libsepol1:amd64 (2.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11331 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.6-2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11330 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_amd64.deb ... Unpacking libsemanage1:amd64 (2.8-2) over (2.6-2) ... Setting up libsemanage1:amd64 (2.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11329 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u1) over (1.0.6-8.1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11329 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5_amd64.deb ... Unpacking libpam-modules-bin (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam-modules-bin (1.3.1-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11329 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5_amd64.deb ... Unpacking libpam-modules:amd64 (1.3.1-5) over (1.1.8-3.6) ... Setting up libpam-modules:amd64 (1.3.1-5) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/limits.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11330 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.5-1.1_amd64.deb ... Unpacking passwd (1:4.5-1.1) over (1:4.4-4.1) ... Setting up passwd (1:4.5-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11330 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.118_all.deb ... Unpacking adduser (3.118) over (3.115) ... Setting up adduser (3.118) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11330 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.35-1_amd64.deb ... Unpacking libgpg-error0:amd64 (1.35-1) over (1.26-2) ... Setting up libgpg-error0:amd64 (1.35-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11311 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.4-5+deb10u1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.4-5+deb10u1) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.8.4-5+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11311 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11311 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1+deb10u2_amd64.deb ... Unpacking gpgv (2.2.12-1+deb10u2) over (2.1.18-8~deb9u4) ... Setting up gpgv (2.2.12-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11311 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.3.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (8.3.0-6) over (6.3.0-18+deb9u1) ... Setting up libstdc++6:amd64 (8.3.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11311 files and directories currently installed.) Preparing to unpack .../archives/apt_1.8.2.3_amd64.deb ... Unpacking apt (1.8.2.3) over (1.4.10) ... Preparing to unpack .../libapt-pkg5.0_1.8.2.3_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.8.2.3) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.8.2.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11340 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.3-1+deb10u1_amd64.deb ... Unpacking liblz4-1:amd64 (1.8.3-1+deb10u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (1.8.3-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11339 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.4-1+deb10u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.4-1+deb10u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.4-1+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u8_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u8_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u8) over (232-25+deb9u12) ... Setting up libudev1:amd64 (241-7~deb10u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) over (9.20161125) ... Preparing to unpack .../tar_1.30+dfsg-6_amd64.deb ... Unpacking tar (1.30+dfsg-6) over (1.29b-1.1) ... Setting up tar (1.30+dfsg-6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11370 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.48) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11370 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo5:amd64 (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up libtinfo5:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11368 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncursesw5:amd64 (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up libncursesw5:amd64 (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11368 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u2_all.deb ... Unpacking ncurses-base (6.1+20181013-2+deb10u2) over (6.0+20161126-1+deb9u2) ... Setting up ncurses-base (6.1+20181013-2+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11370 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.93-8_amd64.deb ... Unpacking sysvinit-utils (2.93-8) over (2.88dsf-59.9) ... Setting up util-linux (2.33.1-0.1) ... update-alternatives: warning: alternative /usr/bin/pg (part of link group pager) doesn't exist; removing from list of alternatives Setting up sysvinit-utils (2.93-8) ... (Reading database ... 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Setting up libexpat1:amd64 (2.2.6-2+deb10u4) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up apt (1.8.2.3) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Setting up e2fslibs:amd64 (1.44.5-1+deb10u3) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up unzip (6.0-23+deb10u2) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u7) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up tzdata (2021a-0+deb10u6) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 19 09:23:20 UTC 2023. Universal Time is now: Wed Apr 19 09:23:20 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up multiarch-support (2.28-10+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up mount (2.33.1-0.1) ... Setting up libcomerr2:amd64 (1.44.5-1+deb10u3) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up openssl (1.1.1n-0+deb10u3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libpaper1:amd64 (1.1.28) ... Setting up fontconfig-config (2.13.1-2) ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up libpaper-utils (1.1.28) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxft2:amd64 (2.3.2-2) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up r-base-core (3.5.2-1) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Installing new version of config file /etc/R/Rprofile.site ... Installing new version of config file /etc/R/ldpaths ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-xml (3.98-1.17-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-cran-littler (0.3.6-1) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-bioc-biocgenerics (0.28.0-2) ... Setting up r-cran-assertthat (0.2.0-2) ... Setting up littler (0.3.6-1) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-dbi (1.0.0-2) ... Setting up r-cran-prettyunits (1.0.2-3) ... Setting up r-cran-bit (1.1-14-1+b1) ... Setting up r-cran-xtable (1:1.8-3-1) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-cran-bit64 (0.9-7-3) ... Setting up r-bioc-biobase (2.42.0-1) ... Setting up r-cran-pkgconfig (2.0.2-1) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-bioc-s4vectors (0.20.1-2) ... Setting up r-cran-memoise (1.1.0-2) ... Setting up r-cran-blob (1.1.1-2) ... Setting up r-bioc-iranges (2.16.0-1) ... Setting up r-cran-rsqlite (2.1.1-2+b1) ... Setting up r-cran-rcurl (1.95-4.11-1) ... Setting up r-bioc-annotationdbi (1.44.0-1) ... Setting up r-bioc-annotate (1.60.0+dfsg-1) ... Setting up r-bioc-geneplotter (1.60.0-1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-yf', 'dist-upgrade'] 1m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m23.0s DUMP: f6fc0f2636004ef589309651dfd778f4 - 1m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-geneplotter'] 1m23.2s DUMP: Package: r-bioc-geneplotter Version: 1.60.0-1 Installed-Size: 1592 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-biobase, r-bioc-biocgenerics, r-cran-lattice, r-bioc-annotate, r-bioc-annotationdbi, r-cran-rcolorbrewer Description-en: R package of functions for plotting genomic data geneplotter contains plotting functions for microarrays Description-md5: 2c0add4008d983f078fba50ad32d266a Homepage: https://bioconductor.org/packages/geneplotter/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-geneplotter/r-bioc-geneplotter_1.60.0-1_all.deb Size: 1548200 MD5sum: 1250f8dac1f9a11f00a070a8b6b62e6d SHA256: d2845096bbcf137ee7fc1dace1b2242ce2bfc08544a78bd916514bc241786ec8 1m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-geneplotter'] 1m23.2s INFO: apt-cache knows about the following packages: r-bioc-geneplotter 1m23.2s INFO: Running scripts pre_install 1m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_database-server'] 1m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_database-server'] 1m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_exceptions'] 1m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_exceptions'] 1m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_extras'] 1m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_extras'] 1m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture'] 1m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture'] 1m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy'] 1m23.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy'] 1m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy', 'r-bioc-geneplotter'] 1m23.4s DUMP: r-bioc-geneplotter: Installed: 1.60.0-1 Candidate: 1.60.0-1 Version table: *** 1.60.0-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy', 'r-bioc-geneplotter'] 1m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-y', 'install', 'r-bioc-geneplotter'] 1m23.8s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-geneplotter is already the newest version (1.60.0-1). The following packages were automatically installed and are no longer required: libblas-common libgfortran3 libicu57 libidn11 libssl1.0.2 libunistring0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-y', 'install', 'r-bioc-geneplotter'] 1m23.8s INFO: Running scripts post_install 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_install_exceptions'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_install_exceptions'] 1m23.8s INFO: Running scripts post_distupgrade 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_exceptions'] 1m23.8s DUMP: Normalized /etc/ca-certificates.conf 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_exceptions'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_zz_backports'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_distupgrade_zz_backports'] 1m23.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m24.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m24.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m24.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m24.8s INFO: Running scripts pre_install 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_database-server'] 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_database-server'] 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_exceptions'] 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_exceptions'] 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_extras'] 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_extras'] 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture'] 1m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture'] 1m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy'] 1m24.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy'] 1m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy', 'r-bioc-geneplotter'] 1m25.0s DUMP: r-bioc-geneplotter: Installed: 1.60.0-1 Candidate: 1.60.0-1 Version table: *** 1.60.0-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-cache', 'policy', 'r-bioc-geneplotter'] 1m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-y', 'install', 'r-bioc-geneplotter=1.60.0-1'] 1m25.4s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-geneplotter is already the newest version (1.60.0-1). The following packages were automatically installed and are no longer required: libblas-common libgfortran3 libicu57 libidn11 libssl1.0.2 libunistring0 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', '-y', 'install', 'r-bioc-geneplotter=1.60.0-1'] 1m25.4s INFO: Running scripts post_install 1m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_install_exceptions'] 1m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_install_exceptions'] 1m25.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m26.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m26.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp650efi5u', '-ac', '--ignore-obsolete'] 1m28.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp650efi5u', '-ac', '--ignore-obsolete'] 1m28.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m28.3s DUMP: 0.15.6 1m28.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m28.3s INFO: Running adequate version 0.15.6 now. 1m28.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'r-bioc-geneplotter'] 1m28.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'r-bioc-geneplotter'] 1m28.4s INFO: Running scripts pre_remove 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_exceptions'] 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/pre_remove_exceptions'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m31.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fslibs:amd64 e2fslibs 1.44.5-1+deb10u3 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcomerr2:amd64 libcomerr2 1.44.5-1+deb10u3 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u4 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw5:amd64 libncursesw5 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtinfo5:amd64 libtinfo5 6.1+20181013-2+deb10u2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed littler littler 0.3.6-1 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed multiarch-support multiarch-support 2.28-10+deb10u1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed r-bioc-annotate r-bioc-annotate 1.60.0+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.44.0-1 install ok installed r-bioc-biobase r-bioc-biobase 2.42.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.28.0-2 install ok installed r-bioc-geneplotter r-bioc-geneplotter 1.60.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.16.0-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.20.1-2 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-bit r-cran-bit 1.1-14-1+b1 install ok installed r-cran-bit64 r-cran-bit64 0.9-7-3 install ok installed r-cran-bitops r-cran-bitops 1.0-6-4 install ok installed r-cran-blob r-cran-blob 1.1.1-2 install ok installed r-cran-dbi r-cran-dbi 1.0.0-2 install ok installed r-cran-digest r-cran-digest 0.6.18-1 install ok installed r-cran-lattice r-cran-lattice 0.20-38-1 install ok installed r-cran-littler r-cran-littler 0.3.6-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-memoise r-cran-memoise 1.1.0-2 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-prettyunits r-cran-prettyunits 1.0.2-3 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-2 install ok installed r-cran-rcpp r-cran-rcpp 1.0.0-1 install ok installed r-cran-rcurl r-cran-rcurl 1.95-4.11-1 install ok installed r-cran-rsqlite r-cran-rsqlite 2.1.1-2+b1 install ok installed r-cran-xml r-cran-xml 3.98-1.17-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-3-1 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-iranges', 'r-bioc-s4vectors', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-dbi', 'r-cran-digest', 'r-cran-lattice', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-memoise', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-prettyunits', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rsqlite', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-geneplotter'] 1m34.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas-common libblas3 libbsd0 libcairo2 libcurl4 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran3 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu57 libicu63 libidn11 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.2 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base openssl r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-geneplotter r-bioc-iranges r-bioc-s4vectors r-cran-assertthat r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-dbi r-cran-digest r-cran-lattice r-cran-littler r-cran-magrittr r-cran-memoise r-cran-pkgconfig r-cran-pkgkitten r-cran-prettyunits r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-xml r-cran-xtable readline-common tzdata ucf unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 110 to remove and 0 not upgraded. After this operation, 220 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11826 files and directories currently installed.) Removing r-bioc-geneplotter (1.60.0-1) ... Removing r-bioc-annotate (1.60.0+dfsg-1) ... Removing r-bioc-annotationdbi (1.44.0-1) ... Removing r-cran-rsqlite (2.1.1-2+b1) ... Removing r-cran-rcpp (1.0.0-1) ... Removing r-cran-rcolorbrewer (1.1-2-2) ... Removing r-cran-xtable (1:1.8-3-1) ... Removing r-cran-xml (3.98-1.17-1) ... Removing libblas-common (3.7.0-2) ... Removing littler (0.3.6-1) ... Removing r-cran-littler (0.3.6-1) ... Removing r-cran-rcurl (1.95-4.11-1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libicu57:amd64 (57.1-6+deb9u4) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing r-bioc-biobase (2.42.0-1) ... Removing r-bioc-iranges (2.16.0-1) ... Removing r-bioc-s4vectors (0.20.1-2) ... Removing r-bioc-biocgenerics (0.28.0-2) ... Removing r-cran-blob (1.1.1-2) ... Removing r-cran-prettyunits (1.0.2-3) ... Removing r-cran-assertthat (0.2.0-2) ... Removing r-cran-bit64 (0.9-7-3) ... Removing r-cran-bit (1.1-14-1+b1) ... Removing r-cran-bitops (1.0-6-4) ... Removing r-cran-dbi (1.0.0-2) ... Removing r-cran-memoise (1.1.0-2) ... Removing r-cran-digest (0.6.18-1) ... Removing r-cran-lattice (0.20-38-1) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-pkgconfig (2.0.2-1) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing r-base-core (3.5.2-1) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libreadline7:amd64 (7.0-5) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing openssl (1.1.1n-0+deb10u3) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing readline-common (7.0-5) ... Removing tzdata (2021a-0+deb10u6) ... Removing ucf (3.0038+nmu1) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-iranges', 'r-bioc-s4vectors', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-dbi', 'r-cran-digest', 'r-cran-lattice', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-memoise', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-prettyunits', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rsqlite', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-geneplotter'] 1m34.0s INFO: Running scripts post_remove 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_remove_exceptions'] 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_remove_exceptions'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-iranges', 'r-bioc-s4vectors', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-dbi', 'r-cran-digest', 'r-cran-lattice', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-memoise', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-prettyunits', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rsqlite', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m35.0s DUMP: (Reading database ... 4678 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for openssl (1.1.1n-0+deb10u3) ... Purging configuration files for r-base-core (3.5.2-1) ... dpkg: warning: ignoring request to remove r-bioc-annotate which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed Purging configuration files for r-cran-rcurl (1.95-4.11-1) ... dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed Purging configuration files for readline-common (7.0-5) ... Purging configuration files for tzdata (2021a-0+deb10u6) ... Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 1m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'libblas-common', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran3:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu57:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libunistring0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'lsb-base', 'openssl', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-iranges', 'r-bioc-s4vectors', 'r-cran-assertthat', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-dbi', 'r-cran-digest', 'r-cran-lattice', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-memoise', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-prettyunits', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-rsqlite', 'r-cran-xml', 'r-cran-xtable', 'readline-common', 'tzdata', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--purge', 'r-bioc-geneplotter'] 1m35.1s DUMP: dpkg: warning: ignoring request to remove r-bioc-geneplotter which isn't installed 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--purge', 'r-bioc-geneplotter'] 1m35.1s INFO: Running scripts post_purge 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_purge_exceptions'] 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_purge_exceptions'] 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--purge', '--pending'] 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--purge', '--pending'] 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--remove', '--pending'] 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg', '--remove', '--pending'] 1m35.1s INFO: Running scripts post_test 1m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_test_exceptions'] 1m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'tmp/scripts/post_test_exceptions'] 1m35.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m35.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg-divert', '--list'] 1m35.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'dpkg-divert', '--list'] 1m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'clean'] 1m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp650efi5u', 'apt-get', 'clean'] 1m35.5s DEBUG: Recording chroot state 1m35.8s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned 1m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/shm'] 1m36.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/shm'] 1m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/console'] 1m36.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/console'] 1m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/ptmx'] 1m36.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/ptmx'] 1m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/pts'] 1m36.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/dev/pts'] 1m36.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/proc'] 1m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp650efi5u/proc'] 1m36.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m36.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp650efi5u'] 1m36.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp650efi5u 1m36.2s INFO: PASS: Upgrading between Debian distributions. 1m36.2s INFO: PASS: All tests. 1m36.2s INFO: piuparts run ends. ret=0 End: 2023-04-19 09:23:43 GMT