Start: 2023-03-26 22:49:17 GMT [stretch] Package: gasic Version: 0.0.r19-1 Installed-Size: 74 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, python-matplotlib, bowtie, bowtie2, bwa, seqan-apps Description: genome abundance similarity correction Homepage: http://sourceforge.net/projects/gasic/ Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-1_amd64.deb Size: 19922 MD5sum: 72c96ac61c52ec65dab1caeee027c422 SHA256: cf8500919e647641eba13e8fc31d18a0d74640eb895016f01ce0e83316b16bc1 [stretch-lts] Package: gasic Version: 0.0.r19-1 Installed-Size: 74 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, python-matplotlib, bowtie, bowtie2, bwa, seqan-apps Description: genome abundance similarity correction Homepage: http://sourceforge.net/projects/gasic/ Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-1_amd64.deb Size: 19922 MD5sum: 72c96ac61c52ec65dab1caeee027c422 SHA256: cf8500919e647641eba13e8fc31d18a0d74640eb895016f01ce0e83316b16bc1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt gasic=0.0.r19-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt gasic=0.0.r19-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpm8m2acde 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpm8m2acde 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpm8m2acde/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'update'] 0m2.7s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'update'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-yf', 'dist-upgrade'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_dummy_users'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_dummy_users'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_minimize'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_minimize'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_zz_backports'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_setup_zz_backports'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat 0m4.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m5.0s INFO: Running scripts is_testable 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/is_testable_uninstallable'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/is_testable_uninstallable'] 0m5.0s INFO: Running scripts pre_test 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_test_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_test_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_test_root_password'] 0m5.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_test_root_password'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m5.2s DUMP: Package: gasic Version: 0.0.r19-1 Installed-Size: 74 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, python-matplotlib, bowtie, bowtie2, bwa, seqan-apps Description-en: genome abundance similarity correction One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Homepage: http://sourceforge.net/projects/gasic/ Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-1_amd64.deb Size: 19922 MD5sum: 72c96ac61c52ec65dab1caeee027c422 SHA256: cf8500919e647641eba13e8fc31d18a0d74640eb895016f01ce0e83316b16bc1 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m5.2s INFO: apt-cache knows about the following packages: gasic 0m5.2s INFO: Running scripts pre_install 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy'] 0m5.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy', 'gasic'] 0m5.4s DUMP: gasic: Installed: (none) Candidate: 0.0.r19-1 Version table: 0.0.r19-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy', 'gasic'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-y', 'install', 'gasic'] 0m32.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bowtie bowtie2 bwa fontconfig fontconfig-config fonts-lyx gnome-icon-theme gtk-update-icon-cache hicolor-icon-theme libatk1.0-0 libatk1.0-data libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libbsd0 libcairo2 libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libexpat1 libffi6 libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhogweed4 libhts1 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpixman-1-0 libpng16-16 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libtasn1-6 libtbb2 libthai-data libthai0 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 mime-support python python-biopython python-cycler python-dateutil python-decorator python-functools32 python-matplotlib python-matplotlib-data python-minimal python-numpy python-pyparsing python-pysam python-reportlab python-reportlab-accel python-scipy python-six python-subprocess32 python-tz python2.7 python2.7-minimal readline-common seqan-apps shared-mime-info ttf-bitstream-vera tzdata ucf Suggested packages: bowtie-examples bowtie2-examples samtools cups-common gnutls-bin krb5-doc krb5-user gvfs libjs-jquery-ui-docs librsvg2-bin python-doc python-tk clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python-mysqldb python-pil python-rdflib python-renderpm python-psycopg2 raxml t-coffee wise python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi python-configobj python-excelerator python-gobject python-gtk2 python-matplotlib-doc python-nose python-qt4 python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft gcc gfortran python-dev python-numpy-dbg python-numpy-doc python-pyparsing-doc pdf-viewer python-egenix-mxtexttools python-reportlab-doc python-scipy-doc python2.7-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates dbus libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin javascript-common krb5-locales publicsuffix libsasl2-modules xml-core bzip2 file xz-utils python-biopython-doc ncbi-blast+ python-glade2 python-imaging python-tk python-renderpm python-pil g++ | c++-compiler python-dev The following NEW packages will be installed: bowtie bowtie2 bwa fontconfig fontconfig-config fonts-lyx gasic gnome-icon-theme gtk-update-icon-cache hicolor-icon-theme libatk1.0-0 libatk1.0-data libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libbsd0 libcairo2 libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libexpat1 libffi6 libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhogweed4 libhts1 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpixman-1-0 libpng16-16 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libtasn1-6 libtbb2 libthai-data libthai0 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 mime-support python python-biopython python-cycler python-dateutil python-decorator python-functools32 python-matplotlib python-matplotlib-data python-minimal python-numpy python-pyparsing python-pysam python-reportlab python-reportlab-accel python-scipy python-six python-subprocess32 python-tz python2.7 python2.7-minimal readline-common seqan-apps shared-mime-info ttf-bitstream-vera tzdata ucf 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 84.9 MB of archives. After this operation, 330 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u3 [389 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u3 [1382 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u3 [1897 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 python2.7 amd64 2.7.13-2+deb9u3 [285 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 python amd64 2.7.13-2 [154 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 fontconfig amd64 2.11.0-6.7+b1 [404 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 tzdata all 2020a-0+deb9u1 [278 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libkrb5support0 amd64 1.15-1+deb9u1 [61.9 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libk5crypto3 amd64 1.15-1+deb9u1 [119 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 libkrb5-3 amd64 1.15-1+deb9u1 [311 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u1 [155 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 bwa amd64 0.7.15-2+deb9u1 [194 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 fonts-lyx all 2.2.2-1 [197 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 python-decorator all 4.0.11-1 [13.3 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 libblas-common amd64 3.7.0-2 [14.2 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 libblas3 amd64 3.7.0-2 [155 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 liblapack3 amd64 3.7.0-2 [2141 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 python-numpy amd64 1:1.12.1-3 [1936 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 python-scipy amd64 0.18.1-2 [8933 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 python-reportlab-accel amd64 3.3.0-2+deb9u1 [36.8 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 python-reportlab all 3.3.0-2+deb9u1 [478 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 python-biopython amd64 1.68+dfsg-3 [1201 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libunistring0 amd64 0.9.6+really0.9.3-0.1 [279 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libidn2-0 amd64 0.16-1+deb9u1 [60.7 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libpsl5 amd64 0.17.0-3 [41.8 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libssh2-1 amd64 1.7.0-1+deb9u1 [139 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u10 [290 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libhts1 amd64 1.3.2-2 [257 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 python-pysam amd64 0.10.0+ds-2 [1301 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 python-six all 1.10.0-3 [14.4 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 python-dateutil all 2.5.3-2 [51.3 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 python-tz all 2016.7-0.3 [33.7 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 libjs-jquery all 3.1.1-2+deb9u1 [154 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 python-cycler all 0.10.0-1 [7448 B] Get:72 http://deb.debian.org/debian stretch/main amd64 python-functools32 all 3.2.3.2-3 [11.0 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 python-subprocess32 amd64 3.2.7-2 [28.9 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u2 [2692 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 libatk1.0-data all 2.22.0-1 [172 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libatk1.0-0 amd64 2.22.0-1 [78.4 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 libcairo2 amd64 1.14.8-1 [771 kB] Get:88 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 shared-mime-info amd64 1.8-1+deb9u1 [731 kB] Get:92 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-common all 2.36.5-2+deb9u2 [311 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libgdk-pixbuf2.0-0 amd64 2.36.5-2+deb9u2 [170 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-common all 2.24.31-2 [2693 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libavahi-common-data amd64 0.6.32-2 [118 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 libavahi-common3 amd64 0.6.32-2 [52.0 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libdbus-1-3 amd64 1.10.32-0+deb9u1 [196 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libavahi-client3 amd64 0.6.32-2 [55.3 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 libcups2 amd64 2.2.1-8+deb9u6 [307 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 libthai-data all 0.1.26-1 [166 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 libdatrie1 amd64 0.2.10-4+b1 [36.4 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libthai0 amd64 0.1.26-1 [52.1 kB] Get:103 http://deb.debian.org/debian stretch/main amd64 libpango-1.0-0 amd64 1.40.5-1 [320 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libgraphite2-3 amd64 1.3.10-1 [84.2 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libharfbuzz0b amd64 1.4.2-1 [671 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libpangoft2-1.0-0 amd64 1.40.5-1 [205 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libpangocairo-1.0-0 amd64 1.40.5-1 [193 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libxcursor1 amd64 1:1.1.14-1+deb9u2 [34.9 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:114 http://deb.debian.org/debian stretch/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:115 http://deb.debian.org/debian stretch/main amd64 hicolor-icon-theme all 0.15-1 [9550 B] Get:116 http://deb.debian.org/debian stretch/main amd64 gtk-update-icon-cache amd64 3.22.11-1 [76.6 kB] Get:117 http://deb.debian.org/debian stretch/main amd64 libcroco3 amd64 0.6.11-3 [143 kB] Get:118 http://deb.debian.org/debian stretch/main amd64 librsvg2-2 amd64 2.40.16-1+b1 [281 kB] Get:119 http://deb.debian.org/debian stretch/main amd64 librsvg2-common amd64 2.40.16-1+b1 [194 kB] Get:120 http://deb.debian.org/debian stretch/main amd64 gnome-icon-theme all 3.12.0-2 [9890 kB] Get:121 http://deb.debian.org/debian stretch/main amd64 libgtk2.0-0 amd64 2.24.31-2 [1800 kB] Get:122 http://deb.debian.org/debian stretch/main amd64 python-matplotlib amd64 2.0.0+dfsg1-2 [1598 kB] Get:123 http://deb.debian.org/debian stretch/main amd64 bowtie amd64 1.1.2-6 [1618 kB] Get:124 http://deb.debian.org/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8966 B] Get:125 http://deb.debian.org/debian stretch/main amd64 libtbb2 amd64 4.3~20150611-2 [136 kB] Get:126 http://deb.debian.org/debian stretch/main amd64 bowtie2 amd64 2.3.0-2 [1166 kB] Get:127 http://deb.debian.org/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73.3 kB] Get:128 http://deb.debian.org/debian stretch/main amd64 seqan-apps amd64 2.3.1+dfsg-4 [11.5 MB] Get:129 http://deb.debian.org/debian stretch/main amd64 gasic amd64 0.0.r19-1 [19.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.9 MB in 4s (17.5 MB/s) Selecting previously unselected package libpython2.7-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-libpython2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../01-python2.7-minimal_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2+deb9u3) ... Selecting previously unselected package python-minimal. Preparing to unpack .../02-python-minimal_2.7.13-2_amd64.deb ... Unpacking python-minimal (2.7.13-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.60_all.deb ... Unpacking mime-support (3.60) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../04-libexpat1_2.2.0-2+deb9u3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u3) ... Selecting previously unselected package libffi6:amd64. Preparing to unpack .../05-libffi6_3.2.1-6_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../07-libreadline7_7.0-3_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../08-libsqlite3-0_3.16.2-5+deb9u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../09-libssl1.1_1.1.0l-1~deb9u1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../10-libpython2.7-stdlib_2.7.13-2+deb9u3_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Selecting previously unselected package python2.7. Preparing to unpack .../11-python2.7_2.7.13-2+deb9u3_amd64.deb ... Unpacking python2.7 (2.7.13-2+deb9u3) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../12-libpython-stdlib_2.7.13-2_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.13-2) ... Setting up libpython2.7-minimal:amd64 (2.7.13-2+deb9u3) ... Setting up python2.7-minimal (2.7.13-2+deb9u3) ... Setting up python-minimal (2.7.13-2) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5237 files and directories currently installed.) Preparing to unpack .../000-python_2.7.13-2_amd64.deb ... Unpacking python (2.7.13-2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../001-libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../002-libfreetype6_2.6.3-3.2+deb9u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../004-ttf-bitstream-vera_1.10-8_all.deb ... Unpacking ttf-bitstream-vera (1.10-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../005-fontconfig-config_2.11.0-6.7_all.deb ... Unpacking fontconfig-config (2.11.0-6.7) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../006-libfontconfig1_2.11.0-6.7+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.11.0-6.7+b1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../007-fontconfig_2.11.0-6.7+b1_amd64.deb ... Unpacking fontconfig (2.11.0-6.7+b1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../008-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../009-tzdata_2020a-0+deb9u1_all.deb ... Unpacking tzdata (2020a-0+deb9u1) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../010-libgmp10_2%3a6.1.2+dfsg-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../011-libnettle6_3.3-1+b2_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+b2) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../012-libhogweed4_3.3-1+b2_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+b2) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../013-libidn11_1.33-1+deb9u1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1+deb9u1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../014-libp11-kit0_0.23.3-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../015-libtasn1-6_4.10-1.1+deb9u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../016-libgnutls30_3.5.8-5+deb9u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../017-libkeyutils1_1.5.9-9_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../018-libkrb5support0_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../019-libk5crypto3_1.15-1+deb9u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../020-libkrb5-3_1.15-1+deb9u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../021-libgssapi-krb5-2_1.15-1+deb9u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../022-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../023-libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../024-libldap-common_2.4.44+dfsg-5+deb9u4_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../025-libldap-2.4-2_2.4.44+dfsg-5+deb9u4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../026-libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../027-libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Selecting previously unselected package bwa. Preparing to unpack .../028-bwa_0.7.15-2+deb9u1_amd64.deb ... Unpacking bwa (0.7.15-2+deb9u1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../029-fonts-lyx_2.2.2-1_all.deb ... Unpacking fonts-lyx (2.2.2-1) ... Selecting previously unselected package python-decorator. Preparing to unpack .../030-python-decorator_4.0.11-1_all.deb ... Unpacking python-decorator (4.0.11-1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../031-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../032-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libblas-common. Preparing to unpack .../033-libblas-common_3.7.0-2_amd64.deb ... Unpacking libblas-common (3.7.0-2) ... Selecting previously unselected package libblas3. Preparing to unpack .../034-libblas3_3.7.0-2_amd64.deb ... Unpacking libblas3 (3.7.0-2) ... Selecting previously unselected package liblapack3. Preparing to unpack .../035-liblapack3_3.7.0-2_amd64.deb ... Unpacking liblapack3 (3.7.0-2) ... Selecting previously unselected package python-numpy. Preparing to unpack .../036-python-numpy_1%3a1.12.1-3_amd64.deb ... Unpacking python-numpy (1:1.12.1-3) ... Selecting previously unselected package python-scipy. Preparing to unpack .../037-python-scipy_0.18.1-2_amd64.deb ... Unpacking python-scipy (0.18.1-2) ... Selecting previously unselected package python-reportlab-accel:amd64. Preparing to unpack .../038-python-reportlab-accel_3.3.0-2+deb9u1_amd64.deb ... Unpacking python-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Selecting previously unselected package python-reportlab. Preparing to unpack .../039-python-reportlab_3.3.0-2+deb9u1_all.deb ... Unpacking python-reportlab (3.3.0-2+deb9u1) ... Selecting previously unselected package python-biopython. Preparing to unpack .../040-python-biopython_1.68+dfsg-3_amd64.deb ... Unpacking python-biopython (1.68+dfsg-3) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../041-libunistring0_0.9.6+really0.9.3-0.1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../042-libidn2-0_0.16-1+deb9u1_amd64.deb ... Unpacking libidn2-0:amd64 (0.16-1+deb9u1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../043-libnghttp2-14_1.18.1-1+deb9u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../044-libpsl5_0.17.0-3_amd64.deb ... Unpacking libpsl5:amd64 (0.17.0-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../045-librtmp1_2.4+20151223.gitfa8646d.1-1+b1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../046-libssh2-1_1.7.0-1+deb9u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.7.0-1+deb9u1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../047-libcurl3-gnutls_7.52.1-5+deb9u10_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Selecting previously unselected package libhts1:amd64. Preparing to unpack .../048-libhts1_1.3.2-2_amd64.deb ... Unpacking libhts1:amd64 (1.3.2-2) ... Selecting previously unselected package python-pysam. Preparing to unpack .../049-python-pysam_0.10.0+ds-2_amd64.deb ... Unpacking python-pysam (0.10.0+ds-2) ... Selecting previously unselected package python-six. Preparing to unpack .../050-python-six_1.10.0-3_all.deb ... Unpacking python-six (1.10.0-3) ... Selecting previously unselected package python-dateutil. Preparing to unpack .../051-python-dateutil_2.5.3-2_all.deb ... Unpacking python-dateutil (2.5.3-2) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../052-python-matplotlib-data_2.0.0+dfsg1-2_all.deb ... Unpacking python-matplotlib-data (2.0.0+dfsg1-2) ... Selecting previously unselected package python-pyparsing. Preparing to unpack .../053-python-pyparsing_2.1.10+dfsg1-1_all.deb ... Unpacking python-pyparsing (2.1.10+dfsg1-1) ... Selecting previously unselected package python-tz. Preparing to unpack .../054-python-tz_2016.7-0.3_all.deb ... Unpacking python-tz (2016.7-0.3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../055-libjs-jquery_3.1.1-2+deb9u1_all.deb ... Unpacking libjs-jquery (3.1.1-2+deb9u1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../056-libjs-jquery-ui_1.12.1+dfsg-4_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-4) ... Selecting previously unselected package python-cycler. Preparing to unpack .../057-python-cycler_0.10.0-1_all.deb ... Unpacking python-cycler (0.10.0-1) ... Selecting previously unselected package python-functools32. Preparing to unpack .../058-python-functools32_3.2.3.2-3_all.deb ... Unpacking python-functools32 (3.2.3.2-3) ... Selecting previously unselected package python-subprocess32. Preparing to unpack .../059-python-subprocess32_3.2.7-2_amd64.deb ... Unpacking python-subprocess32 (3.2.7-2) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../060-libglib2.0-0_2.50.3-2+deb9u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... Selecting previously unselected package libatk1.0-data. Preparing to unpack .../061-libatk1.0-data_2.22.0-1_all.deb ... Unpacking libatk1.0-data (2.22.0-1) ... Selecting previously unselected package libatk1.0-0:amd64. Preparing to unpack .../062-libatk1.0-0_2.22.0-1_amd64.deb ... Unpacking libatk1.0-0:amd64 (2.22.0-1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../063-libpixman-1-0_0.34.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.34.0-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../064-libbsd0_0.8.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../065-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../066-libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../067-libx11-data_2%3a1.6.4-3+deb9u1_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../068-libx11-6_2%3a1.6.4-3+deb9u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../069-libxcb-render0_1.12-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../070-libxcb-shm0_1.12-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.12-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../071-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../072-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../073-libcairo2_1.14.8-1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.8-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../074-libjpeg62-turbo_1%3a1.5.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../075-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../076-libtiff5_4.0.8-2+deb9u5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.8-2+deb9u5) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../077-shared-mime-info_1.8-1+deb9u1_amd64.deb ... Unpacking shared-mime-info (1.8-1+deb9u1) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../078-libgdk-pixbuf2.0-common_2.36.5-2+deb9u2_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Selecting previously unselected package libgdk-pixbuf2.0-0:amd64. Preparing to unpack .../079-libgdk-pixbuf2.0-0_2.36.5-2+deb9u2_amd64.deb ... Unpacking libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Selecting previously unselected package libgtk2.0-common. Preparing to unpack .../080-libgtk2.0-common_2.24.31-2_all.deb ... Unpacking libgtk2.0-common (2.24.31-2) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../081-libavahi-common-data_0.6.32-2_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.32-2) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../082-libavahi-common3_0.6.32-2_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.32-2) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../083-libdbus-1-3_1.10.32-0+deb9u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../084-libavahi-client3_0.6.32-2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.32-2) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../085-libcups2_2.2.1-8+deb9u6_amd64.deb ... Unpacking libcups2:amd64 (2.2.1-8+deb9u6) ... Selecting previously unselected package libthai-data. Preparing to unpack .../086-libthai-data_0.1.26-1_all.deb ... Unpacking libthai-data (0.1.26-1) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../087-libdatrie1_0.2.10-4+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.10-4+b1) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../088-libthai0_0.1.26-1_amd64.deb ... Unpacking libthai0:amd64 (0.1.26-1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../089-libpango-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.40.5-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../090-libgraphite2-3_1.3.10-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.10-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../091-libharfbuzz0b_1.4.2-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.4.2-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../092-libpangoft2-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.40.5-1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../093-libpangocairo-1.0-0_1.40.5-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.40.5-1) ... Selecting previously unselected package libxcomposite1:amd64. Preparing to unpack .../094-libxcomposite1_1%3a0.4.4-2_amd64.deb ... Unpacking libxcomposite1:amd64 (1:0.4.4-2) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../095-libxfixes3_1%3a5.0.3-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-1) ... Selecting previously unselected package libxcursor1:amd64. Preparing to unpack .../096-libxcursor1_1%3a1.1.14-1+deb9u2_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../097-libxdamage1_1%3a1.1.4-2+b3_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-2+b3) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../098-libxi6_2%3a1.7.9-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.9-1) ... Selecting previously unselected package libxinerama1:amd64. Preparing to unpack .../099-libxinerama1_2%3a1.1.3-1+b3_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.3-1+b3) ... Selecting previously unselected package libxrandr2:amd64. Preparing to unpack .../100-libxrandr2_2%3a1.5.1-1_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.5.1-1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../101-hicolor-icon-theme_0.15-1_all.deb ... Unpacking hicolor-icon-theme (0.15-1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../102-gtk-update-icon-cache_3.22.11-1_amd64.deb ... No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. Unpacking gtk-update-icon-cache (3.22.11-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../103-libcroco3_0.6.11-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.11-3) ... Selecting previously unselected package librsvg2-2:amd64. Preparing to unpack .../104-librsvg2-2_2.40.16-1+b1_amd64.deb ... Unpacking librsvg2-2:amd64 (2.40.16-1+b1) ... Selecting previously unselected package librsvg2-common:amd64. Preparing to unpack .../105-librsvg2-common_2.40.16-1+b1_amd64.deb ... Unpacking librsvg2-common:amd64 (2.40.16-1+b1) ... Selecting previously unselected package gnome-icon-theme. Preparing to unpack .../106-gnome-icon-theme_3.12.0-2_all.deb ... Unpacking gnome-icon-theme (3.12.0-2) ... Selecting previously unselected package libgtk2.0-0:amd64. Preparing to unpack .../107-libgtk2.0-0_2.24.31-2_amd64.deb ... Unpacking libgtk2.0-0:amd64 (2.24.31-2) ... Selecting previously unselected package python-matplotlib. Preparing to unpack .../108-python-matplotlib_2.0.0+dfsg1-2_amd64.deb ... Unpacking python-matplotlib (2.0.0+dfsg1-2) ... Selecting previously unselected package bowtie. Preparing to unpack .../109-bowtie_1.1.2-6_amd64.deb ... Unpacking bowtie (1.1.2-6) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../110-libatomic1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libatomic1:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libtbb2:amd64. Preparing to unpack .../111-libtbb2_4.3~20150611-2_amd64.deb ... Unpacking libtbb2:amd64 (4.3~20150611-2) ... Selecting previously unselected package bowtie2. Preparing to unpack .../112-bowtie2_2.3.0-2_amd64.deb ... Unpacking bowtie2 (2.3.0-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../113-libgomp1_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgomp1:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package seqan-apps. Preparing to unpack .../114-seqan-apps_2.3.1+dfsg-4_amd64.deb ... Unpacking seqan-apps (2.3.1+dfsg-4) ... Selecting previously unselected package gasic. Preparing to unpack .../115-gasic_0.0.r19-1_amd64.deb ... Unpacking gasic (0.0.r19-1) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up libatomic1:amd64 (6.3.0-18+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up bwa (0.7.15-2+deb9u1) ... Setting up libgtk2.0-common (2.24.31-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up mime-support (3.60) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 26 22:49:41 UTC 2023. Universal Time is now: Sun Mar 26 22:49:41 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libtbb2:amd64 (4.3~20150611-2) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Setting up libdatrie1:amd64 (0.2.10-4+b1) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up libgraphite2-3:amd64 (1.3.10-1) ... Setting up libatk1.0-data (2.22.0-1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libssh2-1:amd64 (1.7.0-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9) ... Setting up seqan-apps (2.3.1+dfsg-4) ... Setting up hicolor-icon-theme (0.15-1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Setting up libavahi-common-data:amd64 (0.6.32-2) ... Setting up fonts-lyx (2.2.2-1) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up libidn2-0:amd64 (0.16-1+deb9u1) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2) ... Setting up libpsl5:amd64 (0.17.0-3) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u2) ... No schema files found: doing nothing. Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libthai0:amd64 (0.1.26-1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libcroco3:amd64 (0.6.11-3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up libatk1.0-0:amd64 (2.22.0-1) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up shared-mime-info (1.8-1+deb9u1) ... Setting up libavahi-common3:amd64 (0.6.32-2) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up python (2.7.13-2) ... Setting up python-pyparsing (2.1.10+dfsg1-1) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u1) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up bowtie (1.1.2-6) ... Setting up python-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Setting up python-reportlab (3.3.0-2+deb9u1) ... Setting up python-tz (2016.7-0.3) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up python-numpy (1:1.12.1-3) ... Setting up bowtie2 (2.3.0-2) ... Setting up python-six (1.10.0-3) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.6.32-2) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u1) ... Setting up python-decorator (4.0.11-1) ... Setting up python-subprocess32 (3.2.7-2) ... Setting up fontconfig (2.11.0-6.7+b1) ... Regenerating fonts cache... done. Setting up python-biopython (1.68+dfsg-3) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up python-scipy (0.18.1-2) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Setting up python-cycler (0.10.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u1) ... Setting up python-dateutil (2.5.3-2) ... Setting up gtk-update-icon-cache (3.22.11-1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Setting up libpango-1.0-0:amd64 (1.40.5-1) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libcups2:amd64 (2.2.1-8+deb9u6) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libcairo2:amd64 (1.14.8-1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u10) ... Setting up libpangoft2-1.0-0:amd64 (1.40.5-1) ... Setting up libhts1:amd64 (1.3.2-2) ... Setting up python-pysam (0.10.0+ds-2) ... Setting up libpangocairo-1.0-0:amd64 (1.40.5-1) ... Setting up librsvg2-2:amd64 (2.40.16-1+b1) ... Setting up librsvg2-common:amd64 (2.40.16-1+b1) ... Setting up gnome-icon-theme (3.12.0-2) ... update-alternatives: using /usr/share/icons/gnome/scalable/places/debian-swirl.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode Setting up libgtk2.0-0:amd64 (2.24.31-2) ... Setting up python-matplotlib (2.0.0+dfsg1-2) ... Setting up gasic (0.0.r19-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-y', 'install', 'gasic'] 0m32.6s INFO: Running scripts post_install 0m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_install_exceptions'] 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_install_exceptions'] 0m32.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m33.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m33.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpm8m2acde to stretch-lts 0m33.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main 0m33.2s INFO: Running scripts pre_distupgrade 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'update'] 0m34.9s DUMP: Get:1 http://security.debian.org stretch/updates InRelease [59.1 kB] Ign:2 http://deb.debian.org/debian stretch InRelease Hit:3 http://deb.debian.org/debian stretch Release Get:4 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:5 http://security.debian.org stretch/updates/main Translation-en [368 kB] Fetched 1209 kB in 0s (2100 kB/s) Reading package lists... 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'update'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-yf', 'dist-upgrade'] 0m43.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt debian-archive-keyring dpkg e2fslibs e2fsprogs gzip libapt-pkg5.0 libavahi-client3 libavahi-common-data libavahi-common3 libbsd0 libcairo2 libcomerr2 libcups2 libcurl3-gnutls libexpat1 libfreetype6 libgcrypt20 libglib2.0-0 libgmp10 libgnutls30 libgssapi-krb5-2 libhogweed4 libicu57 libjpeg62-turbo libjs-jquery libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblz4-1 liblzma5 libnettle6 libnghttp2-14 libp11-kit0 libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common libsasl2-2 libsasl2-modules-db libsqlite3-0 libss2 libssh2-1 libssl1.1 libsystemd0 libtiff5 libudev1 libx11-6 libx11-data libxml2 login passwd python2.7 python2.7-minimal tar tzdata zlib1g 59 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 33.9 MB of archives. After this operation, 264 kB disk space will be freed. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:11 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:12 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:13 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:14 http://security.debian.org stretch/updates/main amd64 python2.7 amd64 2.7.13-2+deb9u6 [286 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libexpat1 amd64 2.2.0-2+deb9u5 [84.7 kB] Get:16 http://security.debian.org stretch/updates/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u3 [574 kB] Get:17 http://security.debian.org stretch/updates/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u6 [1360 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u6 [1898 kB] Get:19 http://security.debian.org stretch/updates/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u6 [1382 kB] Get:20 http://security.debian.org stretch/updates/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u6 [390 kB] Get:21 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:22 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:23 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:24 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:25 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] Get:26 http://security.debian.org stretch/updates/main amd64 tzdata all 2021a-0+deb9u4 [281 kB] Get:27 http://security.debian.org stretch/updates/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1+deb9u1 [253 kB] Get:28 http://security.debian.org stretch/updates/main amd64 libhogweed4 amd64 3.3-1+deb9u1 [136 kB] Get:29 http://security.debian.org stretch/updates/main amd64 libnettle6 amd64 3.3-1+deb9u1 [192 kB] Get:30 http://security.debian.org stretch/updates/main amd64 libp11-kit0 amd64 0.23.3-2+deb9u1 [112 kB] Get:31 http://security.debian.org stretch/updates/main amd64 libgnutls30 amd64 3.5.8-5+deb9u6 [897 kB] Get:32 http://security.debian.org stretch/updates/main amd64 libgssapi-krb5-2 amd64 1.15-1+deb9u3 [155 kB] Get:33 http://security.debian.org stretch/updates/main amd64 libkrb5-3 amd64 1.15-1+deb9u3 [312 kB] Get:34 http://security.debian.org stretch/updates/main amd64 libkrb5support0 amd64 1.15-1+deb9u3 [62.3 kB] Get:35 http://security.debian.org stretch/updates/main amd64 libk5crypto3 amd64 1.15-1+deb9u3 [120 kB] Get:36 http://security.debian.org stretch/updates/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u2 [68.5 kB] Get:37 http://security.debian.org stretch/updates/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u2 [105 kB] Get:38 http://security.debian.org stretch/updates/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u9 [86.3 kB] Get:39 http://security.debian.org stretch/updates/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u9 [220 kB] Get:40 http://security.debian.org stretch/updates/main amd64 libicu57 amd64 57.1-6+deb9u5 [7700 kB] Get:41 http://security.debian.org stretch/updates/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u7 [920 kB] Get:42 http://security.debian.org stretch/updates/main amd64 libavahi-common-data amd64 0.6.32-2+deb9u1 [118 kB] Get:43 http://security.debian.org stretch/updates/main amd64 libavahi-common3 amd64 0.6.32-2+deb9u1 [52.3 kB] Get:44 http://security.debian.org stretch/updates/main amd64 libavahi-client3 amd64 0.6.32-2+deb9u1 [55.6 kB] Get:45 http://security.debian.org stretch/updates/main amd64 libbsd0 amd64 0.8.3-1+deb9u1 [82.9 kB] Get:46 http://security.debian.org stretch/updates/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u2 [438 kB] Get:47 http://security.debian.org stretch/updates/main amd64 libx11-data all 2:1.6.4-3+deb9u4 [291 kB] Get:48 http://security.debian.org stretch/updates/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u4 [748 kB] Get:49 http://security.debian.org stretch/updates/main amd64 libcairo2 amd64 1.14.8-1+deb9u1 [771 kB] Get:50 http://security.debian.org stretch/updates/main amd64 libcups2 amd64 2.2.1-8+deb9u8 [307 kB] Get:51 http://security.debian.org stretch/updates/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u2 [79.4 kB] Get:52 http://security.debian.org stretch/updates/main amd64 libssh2-1 amd64 1.7.0-1+deb9u2 [139 kB] Get:53 http://security.debian.org stretch/updates/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u16 [296 kB] Get:54 http://security.debian.org stretch/updates/main amd64 libglib2.0-0 amd64 2.50.3-2+deb9u3 [2693 kB] Get:55 http://security.debian.org stretch/updates/main amd64 libjpeg62-turbo amd64 1:1.5.1-2+deb9u2 [134 kB] Get:56 http://security.debian.org stretch/updates/main amd64 libjs-jquery all 3.1.1-2+deb9u2 [154 kB] Get:57 http://security.debian.org stretch/updates/main amd64 librsvg2-common amd64 2.40.21-0+deb9u1 [16.6 kB] Get:58 http://security.debian.org stretch/updates/main amd64 librsvg2-2 amd64 2.40.21-0+deb9u1 [108 kB] Get:59 http://security.debian.org stretch/updates/main amd64 libtiff5 amd64 4.0.8-2+deb9u8 [239 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.9 MB in 0s (66.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1+deb9u1_amd64.deb ... Unpacking tar (1.29b-1.1+deb9u1) over (1.29b-1.1) ... Setting up tar (1.29b-1.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.26_amd64.deb ... Unpacking dpkg (1.18.26) over (1.18.25) ... Setting up dpkg (1.18.26) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fslibs:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fslibs:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fsprogs (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../gzip_1.6-5+deb9u1_amd64.deb ... Unpacking gzip (1.6-5+deb9u1) over (1.6-5+b1) ... Setting up gzip (1.6-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19148 files and directories currently installed.) Preparing to unpack .../login_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking login (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up login (1:4.4-4.1+deb9u1) ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19148 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5+deb9u2_all.deb ... Unpacking debian-archive-keyring (2017.5+deb9u2) over (2017.5+deb9u1) ... Setting up debian-archive-keyring (2017.5+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19151 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+deb9u1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+deb9u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (0.0~r131-2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19150 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.2-1.2+deb9u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.2-1.2+deb9u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.2-1.2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4.11_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.11) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.11_amd64.deb ... Unpacking apt (1.4.11) over (1.4.10) ... Setting up apt (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u14_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19149 files and directories currently installed.) Preparing to unpack .../0-python2.7_2.7.13-2+deb9u6_amd64.deb ... Unpacking python2.7 (2.7.13-2+deb9u6) over (2.7.13-2+deb9u3) ... Preparing to unpack .../1-libexpat1_2.2.0-2+deb9u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u5) over (2.2.0-2+deb9u3) ... Preparing to unpack .../2-libsqlite3-0_3.16.2-5+deb9u3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u3) over (3.16.2-5+deb9u1) ... Preparing to unpack .../3-libssl1.1_1.1.0l-1~deb9u6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u6) over (1.1.0l-1~deb9u1) ... Preparing to unpack .../4-libpython2.7-stdlib_2.7.13-2+deb9u6_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.13-2+deb9u6) over (2.7.13-2+deb9u3) ... Preparing to unpack .../5-python2.7-minimal_2.7.13-2+deb9u6_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2+deb9u6) over (2.7.13-2+deb9u3) ... Preparing to unpack .../6-libpython2.7-minimal_2.7.13-2+deb9u6_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) over (2.7.13-2+deb9u3) ... Preparing to unpack .../7-libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19150 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19150 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking passwd (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up passwd (1:4.4-4.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19150 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u14_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libudev1:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19150 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u4) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19150 files and directories currently installed.) Preparing to unpack .../00-tzdata_2021a-0+deb9u4_all.deb ... Unpacking tzdata (2021a-0+deb9u4) over (2020a-0+deb9u1) ... Preparing to unpack .../01-libgmp10_2%3a6.1.2+dfsg-1+deb9u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1+deb9u1) over (2:6.1.2+dfsg-1) ... Preparing to unpack .../02-libhogweed4_3.3-1+deb9u1_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+deb9u1) over (3.3-1+b2) ... Preparing to unpack .../03-libnettle6_3.3-1+deb9u1_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+deb9u1) over (3.3-1+b2) ... Preparing to unpack .../04-libp11-kit0_0.23.3-2+deb9u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2+deb9u1) over (0.23.3-2) ... Preparing to unpack .../05-libgnutls30_3.5.8-5+deb9u6_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u6) over (3.5.8-5+deb9u5) ... Preparing to unpack .../06-libgssapi-krb5-2_1.15-1+deb9u3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../07-libkrb5-3_1.15-1+deb9u3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../08-libkrb5support0_1.15-1+deb9u3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../09-libk5crypto3_1.15-1+deb9u3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.15-1+deb9u3) over (1.15-1+deb9u1) ... Preparing to unpack .../10-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) over (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Preparing to unpack .../11-libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) over (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Preparing to unpack .../12-libldap-common_2.4.44+dfsg-5+deb9u9_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u9) over (2.4.44+dfsg-5+deb9u4) ... Preparing to unpack .../13-libldap-2.4-2_2.4.44+dfsg-5+deb9u9_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u9) over (2.4.44+dfsg-5+deb9u4) ... Preparing to unpack .../14-libicu57_57.1-6+deb9u5_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u5) over (57.1-6+deb9u4) ... Preparing to unpack .../15-libxml2_2.9.4+dfsg1-2.2+deb9u7_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) over (2.9.4+dfsg1-2.2+deb9u2) ... Preparing to unpack .../16-libavahi-common-data_0.6.32-2+deb9u1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.6.32-2+deb9u1) over (0.6.32-2) ... Preparing to unpack .../17-libavahi-common3_0.6.32-2+deb9u1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.6.32-2+deb9u1) over (0.6.32-2) ... Preparing to unpack .../18-libavahi-client3_0.6.32-2+deb9u1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.6.32-2+deb9u1) over (0.6.32-2) ... Preparing to unpack .../19-libbsd0_0.8.3-1+deb9u1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1+deb9u1) over (0.8.3-1) ... Preparing to unpack .../20-libfreetype6_2.6.3-3.2+deb9u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u2) over (2.6.3-3.2+deb9u1) ... Preparing to unpack .../21-libx11-data_2%3a1.6.4-3+deb9u4_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u4) over (2:1.6.4-3+deb9u1) ... Preparing to unpack .../22-libx11-6_2%3a1.6.4-3+deb9u4_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u4) over (2:1.6.4-3+deb9u1) ... Preparing to unpack .../23-libcairo2_1.14.8-1+deb9u1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.8-1+deb9u1) over (1.14.8-1) ... Preparing to unpack .../24-libcups2_2.2.1-8+deb9u8_amd64.deb ... Unpacking libcups2:amd64 (2.2.1-8+deb9u8) over (2.2.1-8+deb9u6) ... Preparing to unpack .../25-libnghttp2-14_1.18.1-1+deb9u2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1+deb9u2) over (1.18.1-1+deb9u1) ... Preparing to unpack .../26-libssh2-1_1.7.0-1+deb9u2_amd64.deb ... Unpacking libssh2-1:amd64 (1.7.0-1+deb9u2) over (1.7.0-1+deb9u1) ... Preparing to unpack .../27-libcurl3-gnutls_7.52.1-5+deb9u16_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.52.1-5+deb9u16) over (7.52.1-5+deb9u10) ... Preparing to unpack .../28-libglib2.0-0_2.50.3-2+deb9u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.50.3-2+deb9u3) over (2.50.3-2+deb9u2) ... Preparing to unpack .../29-libjpeg62-turbo_1%3a1.5.1-2+deb9u2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2+deb9u2) over (1:1.5.1-2) ... Preparing to unpack .../30-libjs-jquery_3.1.1-2+deb9u2_all.deb ... Unpacking libjs-jquery (3.1.1-2+deb9u2) over (3.1.1-2+deb9u1) ... Preparing to unpack .../31-librsvg2-common_2.40.21-0+deb9u1_amd64.deb ... Unpacking librsvg2-common:amd64 (2.40.21-0+deb9u1) over (2.40.16-1+b1) ... Preparing to unpack .../32-librsvg2-2_2.40.21-0+deb9u1_amd64.deb ... Unpacking librsvg2-2:amd64 (2.40.21-0+deb9u1) over (2.40.16-1+b1) ... Preparing to unpack .../33-libtiff5_4.0.8-2+deb9u8_amd64.deb ... Unpacking libtiff5:amd64 (4.0.8-2+deb9u8) over (4.0.8-2+deb9u5) ... Setting up libjs-jquery (3.1.1-2+deb9u2) ... Setting up libnettle6:amd64 (3.3-1+deb9u1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u5) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2+deb9u2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u2) ... Processing triggers for mime-support (3.60) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u9) ... Setting up tzdata (2021a-0+deb9u4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 26 22:49:59 UTC 2023. Universal Time is now: Sun Mar 26 22:49:59 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libglib2.0-0:amd64 (2.50.3-2+deb9u3) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u8) ... Setting up libicu57:amd64 (57.1-6+deb9u5) ... Setting up libbsd0:amd64 (0.8.3-1+deb9u1) ... Setting up libkrb5support0:amd64 (1.15-1+deb9u3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1+deb9u1) ... Setting up libssh2-1:amd64 (1.7.0-1+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u6) ... Setting up libp11-kit0:amd64 (0.23.3-2+deb9u1) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u3) ... Setting up libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... Setting up libx11-data (2:1.6.4-3+deb9u4) ... Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u6) ... Setting up python2.7-minimal (2.7.13-2+deb9u6) ... Setting up libavahi-common-data:amd64 (0.6.32-2+deb9u1) ... Setting up libk5crypto3:amd64 (1.15-1+deb9u3) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u4) ... Setting up python2.7 (2.7.13-2+deb9u6) ... Setting up libhogweed4:amd64 (3.3-1+deb9u1) ... Setting up libkrb5-3:amd64 (1.15-1+deb9u3) ... Setting up libavahi-common3:amd64 (0.6.32-2+deb9u1) ... Setting up libcairo2:amd64 (1.14.8-1+deb9u1) ... Setting up librsvg2-2:amd64 (2.40.21-0+deb9u1) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u6) ... Setting up librsvg2-common:amd64 (2.40.21-0+deb9u1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u9) ... Setting up libavahi-client3:amd64 (0.6.32-2+deb9u1) ... Setting up libcups2:amd64 (2.2.1-8+deb9u8) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5+deb9u16) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-yf', 'dist-upgrade'] 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m43.8s DUMP: f0660a0a38f941b755664f52e8306b99 - 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m44.0s DUMP: Package: gasic Version: 0.0.r19-1 Installed-Size: 74 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, python-matplotlib, bowtie, bowtie2, bwa, seqan-apps Description-en: genome abundance similarity correction One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Homepage: http://sourceforge.net/projects/gasic/ Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-1_amd64.deb Size: 19922 MD5sum: 72c96ac61c52ec65dab1caeee027c422 SHA256: cf8500919e647641eba13e8fc31d18a0d74640eb895016f01ce0e83316b16bc1 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m44.0s INFO: apt-cache knows about the following packages: gasic 0m44.0s INFO: Running scripts pre_install 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_database-server'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_database-server'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_exceptions'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_extras'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_extras'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy'] 0m44.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy'] 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy', 'gasic'] 0m44.2s DUMP: gasic: Installed: 0.0.r19-1 Candidate: 0.0.r19-1 Version table: *** 0.0.r19-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy', 'gasic'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-y', 'install', 'gasic'] 0m44.5s DUMP: Reading package lists... Building dependency tree... Reading state information... gasic is already the newest version (0.0.r19-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-y', 'install', 'gasic'] 0m44.5s INFO: Running scripts post_install 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_install_exceptions'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_install_exceptions'] 0m44.6s INFO: Running scripts post_distupgrade 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_zz_backports'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_distupgrade_zz_backports'] 0m44.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m45.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m45.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m46.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m46.4s INFO: Running scripts pre_install 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_database-server'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_database-server'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_exceptions'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_exceptions'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_extras'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_extras'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy'] 0m46.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy'] 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy', 'gasic'] 0m46.5s DUMP: gasic: Installed: 0.0.r19-1 Candidate: 0.0.r19-1 Version table: *** 0.0.r19-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-cache', 'policy', 'gasic'] 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-y', 'install', 'gasic=0.0.r19-1'] 0m46.8s DUMP: Reading package lists... Building dependency tree... Reading state information... gasic is already the newest version (0.0.r19-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', '-y', 'install', 'gasic=0.0.r19-1'] 0m46.8s INFO: Running scripts post_install 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_install_exceptions'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_install_exceptions'] 0m46.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m47.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m48.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', '-ac', '--ignore-obsolete'] 0m50.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', '-ac', '--ignore-obsolete'] 0m50.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.3s DUMP: 0.15.6 0m50.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m50.3s INFO: Running adequate version 0.15.6 now. 0m50.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'gasic'] 0m50.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'gasic'] 0m50.4s INFO: Running scripts pre_remove 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m53.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m53.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m53.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m53.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m53.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_exceptions'] 0m53.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/pre_remove_exceptions'] 0m53.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m53.9s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.11 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bowtie bowtie 1.1.2-6 install ok installed bowtie2 bowtie2 2.3.0-2 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed bwa bwa 0.7.15-2+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig fontconfig 2.11.0-6.7+b1 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-lyx fonts-lyx 2.2.2-1 install ok installed gasic gasic 0.0.r19-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gnome-icon-theme gnome-icon-theme 3.12.0-2 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.22.11-1 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.15-1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.22.0-1 install ok installed libatk1.0-data libatk1.0-data 2.22.0-1 install ok installed libatomic1:amd64 libatomic1 6.3.0-18+deb9u1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.32-2+deb9u1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.32-2+deb9u1 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.32-2+deb9u1 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcairo2:amd64 libcairo2 1.14.8-1+deb9u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libcroco3:amd64 libcroco3 0.6.11-3 install ok installed libcups2:amd64 libcups2 2.2.1-8+deb9u8 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.52.1-5+deb9u16 install ok installed libdatrie1:amd64 libdatrie1 0.2.10-4+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.10.32-0+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u5 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u2 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.36.5-2+deb9u2 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.36.5-2+deb9u2 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.50.3-2+deb9u3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1+deb9u1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u6 install ok installed libgomp1:amd64 libgomp1 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.10-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.15-1+deb9u3 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.31-2 install ok installed libgtk2.0-common libgtk2.0-common 2.24.31-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.4.2-1 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+deb9u1 install ok installed libhts1:amd64 libhts1 1.3.2-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u5 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libidn2-0:amd64 libidn2-0 0.16-1+deb9u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2+deb9u2 install ok installed libjs-jquery libjs-jquery 3.1.1-2+deb9u2 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.15-1+deb9u3 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9 install ok installed libkrb5-3:amd64 libkrb5-3 1.15-1+deb9u3 install ok installed libkrb5support0:amd64 libkrb5support0 1.15-1+deb9u3 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u9 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u9 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnettle6:amd64 libnettle6 3.3-1+deb9u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2+deb9u1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.40.5-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.40.5-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.40.5-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libpsl5:amd64 libpsl5 0.17.0-3 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u6 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u6 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed librsvg2-2:amd64 librsvg2-2 2.40.21-0+deb9u1 install ok installed librsvg2-common:amd64 librsvg2-common 2.40.21-0+deb9u1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-1+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u2 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u3 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libssh2-1:amd64 libssh2-1 1.7.0-1+deb9u2 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u6 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libtbb2:amd64 libtbb2 4.3~20150611-2 install ok installed libthai-data libthai-data 0.1.26-1 install ok installed libthai0:amd64 libthai0 0.1.26-1 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u8 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed libunistring0:amd64 libunistring0 0.9.6+really0.9.3-0.1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u4 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u4 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.12-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.12-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.4-2 install ok installed libxcursor1:amd64 libxcursor1 1:1.1.14-1+deb9u2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-2+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.3-1+b3 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u7 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed python python 2.7.13-2 install ok installed python-biopython python-biopython 1.68+dfsg-3 install ok installed python-cycler python-cycler 0.10.0-1 install ok installed python-dateutil python-dateutil 2.5.3-2 install ok installed python-decorator python-decorator 4.0.11-1 install ok installed python-functools32 python-functools32 3.2.3.2-3 install ok installed python-matplotlib python-matplotlib 2.0.0+dfsg1-2 install ok installed python-matplotlib-data python-matplotlib-data 2.0.0+dfsg1-2 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python-numpy python-numpy 1:1.12.1-3 install ok installed python-pyparsing python-pyparsing 2.1.10+dfsg1-1 install ok installed python-pysam python-pysam 0.10.0+ds-2 install ok installed python-reportlab python-reportlab 3.3.0-2+deb9u1 install ok installed python-reportlab-accel:amd64 python-reportlab-accel 3.3.0-2+deb9u1 install ok installed python-scipy python-scipy 0.18.1-2 install ok installed python-six python-six 1.10.0-3 install ok installed python-subprocess32 python-subprocess32 3.2.7-2 install ok installed python-tz python-tz 2016.7-0.3 install ok installed python2.7 python2.7 2.7.13-2+deb9u6 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u6 install ok installed readline-common readline-common 7.0-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed seqan-apps seqan-apps 2.3.1+dfsg-4 install ok installed shared-mime-info shared-mime-info 1.8-1+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed tzdata tzdata 2021a-0+deb9u4 install ok installed ucf ucf 3.0036 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 0m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'remove', 'bowtie', 'bowtie2', 'bwa', 'fontconfig', 'fontconfig-config', 'fonts-lyx', 'gnome-icon-theme', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhts1:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'mime-support', 'python', 'python-biopython', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-functools32', 'python-matplotlib', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-pyparsing', 'python-pysam', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-scipy', 'python-six', 'python-subprocess32', 'python-tz', 'python2.7', 'python2.7-minimal', 'readline-common', 'seqan-apps', 'shared-mime-info', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'gasic'] 0m58.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bowtie bowtie2 bwa fontconfig fontconfig-config fonts-lyx gasic gnome-icon-theme gtk-update-icon-cache hicolor-icon-theme libatk1.0-0 libatk1.0-data libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libbsd0 libcairo2 libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libexpat1 libffi6 libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhogweed4 libhts1 libicu57 libidn11 libidn2-0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libnettle6 libnghttp2-14 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpixman-1-0 libpng16-16 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 libtasn1-6 libtbb2 libthai-data libthai0 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 mime-support python python-biopython python-cycler python-dateutil python-decorator python-functools32 python-matplotlib python-matplotlib-data python-minimal python-numpy python-pyparsing python-pysam python-reportlab python-reportlab-accel python-scipy python-six python-subprocess32 python-tz python2.7 python2.7-minimal readline-common seqan-apps shared-mime-info ttf-bitstream-vera tzdata ucf 0 upgraded, 0 newly installed, 129 to remove and 0 not upgraded. After this operation, 330 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19145 files and directories currently installed.) Removing gasic (0.0.r19-1) ... Removing bowtie (1.1.2-6) ... Removing bowtie2 (2.3.0-2) ... Removing bwa (0.7.15-2+deb9u1) ... Removing python-matplotlib (2.0.0+dfsg1-2) ... Removing libgtk2.0-0:amd64 (2.24.31-2) ... Removing gnome-icon-theme (3.12.0-2) ... update-alternatives: using /usr/share/icons/gnome/scalable/places/gnome-foot.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode update-alternatives: warning: skip creation of /usr/share/icons/gnome/256x256/places/start-here.png because associated file /usr/share/icons/gnome/256x256/places/gnome-foot.png (of link group start-here.svg) doesn't exist Removing librsvg2-common:amd64 (2.40.21-0+deb9u1) ... Removing librsvg2-2:amd64 (2.40.21-0+deb9u1) ... Removing libpangocairo-1.0-0:amd64 (1.40.5-1) ... Removing libpangoft2-1.0-0:amd64 (1.40.5-1) ... Removing libpango-1.0-0:amd64 (1.40.5-1) ... Removing fontconfig (2.11.0-6.7+b1) ... Removing libcairo2:amd64 (1.14.8-1+deb9u1) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing python-matplotlib-data (2.0.0+dfsg1-2) ... Removing fonts-lyx (2.2.2-1) ... Removing gtk-update-icon-cache (3.22.11-1) ... Removing hicolor-icon-theme (0.15-1) ... Removing libatk1.0-0:amd64 (2.22.0-1) ... Removing libatk1.0-data (2.22.0-1) ... Removing libtbb2:amd64 (4.3~20150611-2) ... Removing libatomic1:amd64 (6.3.0-18+deb9u1) ... Removing libcups2:amd64 (2.2.1-8+deb9u8) ... Removing libavahi-client3:amd64 (0.6.32-2+deb9u1) ... Removing libavahi-common3:amd64 (0.6.32-2+deb9u1) ... Removing libavahi-common-data:amd64 (0.6.32-2+deb9u1) ... Removing python-scipy (0.18.1-2) ... Removing python-biopython (1.68+dfsg-3) ... Removing python-numpy (1:1.12.1-3) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing libxcursor1:amd64 (1:1.1.14-1+deb9u2) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxcb-shm0:amd64 (1.12-1) ... Removing libcroco3:amd64 (0.6.11-3) ... Removing python-pysam (0.10.0+ds-2) ... Removing libhts1:amd64 (1.3.2-2) ... Removing libcurl3-gnutls:amd64 (7.52.1-5+deb9u16) ... Removing libthai0:amd64 (0.1.26-1) ... Removing libdatrie1:amd64 (0.2.10-4+b1) ... Removing libdbus-1-3:amd64 (1.10.32-0+deb9u1) ... Removing python-subprocess32 (3.2.7-2) ... Removing python-dateutil (2.5.3-2) ... Removing python-cycler (0.10.0-1) ... Removing python-six (1.10.0-3) ... Removing python-reportlab (3.3.0-2+deb9u1) ... Removing python-reportlab-accel:amd64 (3.3.0-2+deb9u1) ... Removing python-tz (2016.7-0.3) ... Removing libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u9) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Removing libgnutls30:amd64 (3.5.8-5+deb9u6) ... Removing libp11-kit0:amd64 (0.23.3-2+deb9u1) ... Removing libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... Removing shared-mime-info (1.8-1+deb9u1) ... Removing libharfbuzz0b:amd64 (1.4.2-1) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u2) ... Removing libgdk-pixbuf2.0-common (2.36.5-2+deb9u2) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libhogweed4:amd64 (3.3-1+deb9u1) ... Removing libgmp10:amd64 (2:6.1.2+dfsg-1+deb9u1) ... Removing seqan-apps (2.3.1+dfsg-4) ... Removing libgomp1:amd64 (6.3.0-18+deb9u1) ... Removing libgraphite2-3:amd64 (1.3.10-1) ... Removing libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Removing libgtk2.0-common (2.24.31-2) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Removing libicu57:amd64 (57.1-6+deb9u5) ... Removing libidn11:amd64 (1.33-1+deb9u1) ... Removing libpsl5:amd64 (0.17.0-3) ... Removing libidn2-0:amd64 (0.16-1+deb9u1) ... Removing libtiff5:amd64 (4.0.8-2+deb9u8) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2+deb9u2) ... Removing libjs-jquery-ui (1.12.1+dfsg-4) ... Removing libjs-jquery (3.1.1-2+deb9u2) ... Removing libkrb5-3:amd64 (1.15-1+deb9u3) ... Removing libk5crypto3:amd64 (1.15-1+deb9u3) ... Removing libkrb5support0:amd64 (1.15-1+deb9u3) ... Removing libkeyutils1:amd64 (1.5.9-9) ... Removing libldap-common (2.4.44+dfsg-5+deb9u9) ... Removing libnettle6:amd64 (3.3-1+deb9u1) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u2) ... Removing libpixman-1-0:amd64 (0.34.0-1) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Removing libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Removing libssh2-1:amd64 (1.7.0-1+deb9u2) ... Removing libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Removing libthai-data (0.1.26-1) ... Removing libunistring0:amd64 (0.9.6+really0.9.3-0.1) ... Removing libxcb-render0:amd64 (1.12-1) ... Removing libxcomposite1:amd64 (1:0.4.4-2) ... Removing libxdamage1:amd64 (1:1.1.4-2+b3) ... Removing libxinerama1:amd64 (2:1.1.3-1+b3) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing python-decorator (4.0.11-1) ... Removing python-functools32 (3.2.3.2-3) ... Removing python-pyparsing (2.1.10+dfsg1-1) ... Removing ttf-bitstream-vera (1.10-8) ... Removing tzdata (2021a-0+deb9u4) ... Removing ucf (3.0036) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u6) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u6) ... Removing libexpat1:amd64 (2.2.0-2+deb9u5) ... Removing libglib2.0-0:amd64 (2.50.3-2+deb9u3) ... Removing libffi6:amd64 (3.2.1-6) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u6) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... Removing libreadline7:amd64 (7.0-3) ... Removing libsqlite3-0:amd64 (3.16.2-5+deb9u3) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u6) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing mime-support (3.60) ... Removing readline-common (7.0-3) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u4) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1+deb9u1) ... Removing libx11-data (2:1.6.4-3+deb9u4) ... Removing libxau6:amd64 (1:1.0.8-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'remove', 'bowtie', 'bowtie2', 'bwa', 'fontconfig', 'fontconfig-config', 'fonts-lyx', 'gnome-icon-theme', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhts1:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'mime-support', 'python', 'python-biopython', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-functools32', 'python-matplotlib', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-pyparsing', 'python-pysam', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-scipy', 'python-six', 'python-subprocess32', 'python-tz', 'python2.7', 'python2.7-minimal', 'readline-common', 'seqan-apps', 'shared-mime-info', 'ttf-bitstream-vera', 'tzdata', 'ucf', 'gasic'] 0m58.0s INFO: Running scripts post_remove 0m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_remove_exceptions'] 0m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_remove_exceptions'] 0m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--purge', 'bowtie', 'bowtie2', 'bwa', 'fontconfig', 'fontconfig-config', 'fonts-lyx', 'gnome-icon-theme', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhts1:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'mime-support', 'python', 'python-biopython', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-functools32', 'python-matplotlib', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-pyparsing', 'python-pysam', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-scipy', 'python-six', 'python-subprocess32', 'python-tz', 'python2.7', 'python2.7-minimal', 'readline-common', 'seqan-apps', 'shared-mime-info', 'ttf-bitstream-vera', 'tzdata', 'ucf'] 0m58.7s DUMP: dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed (Reading database ... 4434 files and directories currently installed.) Purging configuration files for fontconfig (2.11.0-6.7+b1) ... Purging configuration files for fontconfig-config (2.11.0-6.7) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove gnome-icon-theme which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-data which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcroco3 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed Purging configuration files for libgdk-pixbuf2.0-0:amd64 (2.36.5-2+deb9u2) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.50.3-2+deb9u3) ... dpkg: warning: ignoring request to remove libgmp10 which isn't installed dpkg: warning: ignoring request to remove libgnutls30 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.15-1+deb9u3) ... Purging configuration files for libgtk2.0-0:amd64 (2.24.31-2) ... Purging configuration files for libgtk2.0-common (2.24.31-2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhogweed4 which isn't installed dpkg: warning: ignoring request to remove libhts1 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-4) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.44+dfsg-5+deb9u9) ... dpkg: warning: ignoring request to remove libnettle6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librsvg2-2 which isn't installed dpkg: warning: ignoring request to remove librsvg2-common which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u6) ... dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libunistring0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed Purging configuration files for mime-support (3.60) ... Purging configuration files for python (2.7.13-2) ... dpkg: warning: ignoring request to remove python-biopython which isn't installed dpkg: warning: ignoring request to remove python-cycler which isn't installed dpkg: warning: ignoring request to remove python-dateutil which isn't installed dpkg: warning: ignoring request to remove python-decorator which isn't installed dpkg: warning: ignoring request to remove python-functools32 which isn't installed dpkg: warning: ignoring request to remove python-matplotlib which isn't installed Purging configuration files for python-matplotlib-data (2.0.0+dfsg1-2) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python-pyparsing which isn't installed dpkg: warning: ignoring request to remove python-pysam which isn't installed dpkg: warning: ignoring request to remove python-reportlab which isn't installed dpkg: warning: ignoring request to remove python-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python-scipy which isn't installed dpkg: warning: ignoring request to remove python-six which isn't installed dpkg: warning: ignoring request to remove python-subprocess32 which isn't installed dpkg: warning: ignoring request to remove python-tz which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u6) ... Purging configuration files for readline-common (7.0-3) ... dpkg: warning: ignoring request to remove seqan-apps which isn't installed Purging configuration files for shared-mime-info (1.8-1+deb9u1) ... dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for tzdata (2021a-0+deb9u4) ... Purging configuration files for ucf (3.0036) ... 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--purge', 'bowtie', 'bowtie2', 'bwa', 'fontconfig', 'fontconfig-config', 'fonts-lyx', 'gnome-icon-theme', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas-common', 'libblas3', 'libbsd0:amd64', 'libcairo2:amd64', 'libcroco3:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libffi6:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran3:amd64', 'libglib2.0-0:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libhogweed4:amd64', 'libhts1:amd64', 'libicu57:amd64', 'libidn11:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3', 'libldap-2.4-2:amd64', 'libldap-common', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtasn1-6:amd64', 'libtbb2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libunistring0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'mime-support', 'python', 'python-biopython', 'python-cycler', 'python-dateutil', 'python-decorator', 'python-functools32', 'python-matplotlib', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-pyparsing', 'python-pysam', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-scipy', 'python-six', 'python-subprocess32', 'python-tz', 'python2.7', 'python2.7-minimal', 'readline-common', 'seqan-apps', 'shared-mime-info', 'ttf-bitstream-vera', 'tzdata', 'ucf'] 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--purge', 'gasic'] 0m58.7s DUMP: dpkg: warning: ignoring request to remove gasic which isn't installed 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--purge', 'gasic'] 0m58.7s INFO: Running scripts post_purge 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_purge_exceptions'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_purge_exceptions'] 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--purge', '--pending'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--purge', '--pending'] 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--remove', '--pending'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg', '--remove', '--pending'] 0m58.7s INFO: Running scripts post_test 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_test_exceptions'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'tmp/scripts/post_test_exceptions'] 0m58.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m59.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg-divert', '--list'] 0m59.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'dpkg-divert', '--list'] 0m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'clean'] 0m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpm8m2acde', 'apt-get', 'clean'] 0m59.0s DEBUG: Recording chroot state 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/shm'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/shm'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/console'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/console'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/ptmx'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/ptmx'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/pts'] 0m59.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/dev/pts'] 0m59.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/proc'] 0m59.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpm8m2acde/proc'] 0m59.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m59.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpm8m2acde'] 0m59.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpm8m2acde 0m59.7s INFO: PASS: Upgrading between Debian distributions. 0m59.7s INFO: PASS: All tests. 0m59.7s INFO: piuparts run ends. ret=0 End: 2023-03-26 22:50:17 GMT