Start: 2023-02-27 01:06:41 GMT [stretch] Package: gbrowse-calign Source: gbrowse Version: 2.56+dfsg-2 Installed-Size: 76 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.24.1-1), perlapi-5.24.1, libc6 (>= 2.4), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 52106883c9df300bab833de801839ea2 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.56+dfsg-2_amd64.deb Size: 35848 MD5sum: b7465ab97d2c9802d3a2575cd6bd2ef1 SHA256: 2a63dd4137a9d137c55ab55172211c8043417a312272f90a74e6d4effb1c7052 [stretch-lts] Package: gbrowse-calign Source: gbrowse Version: 2.56+dfsg-2 Installed-Size: 76 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.24.1-1), perlapi-5.24.1, libc6 (>= 2.4), gbrowse Description: CAlign helper Homepage: http://www.gbrowse.org/ Description-md5: 52106883c9df300bab833de801839ea2 Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.56+dfsg-2_amd64.deb Size: 35848 MD5sum: b7465ab97d2c9802d3a2575cd6bd2ef1 SHA256: 2a63dd4137a9d137c55ab55172211c8043417a312272f90a74e6d4effb1c7052 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt gbrowse-calign=2.56+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt gbrowse-calign=2.56+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpj5pvp4ex 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpj5pvp4ex 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/shm'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/shm'] 0m1.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.3s DEBUG: Created policy-rc.d and chmodded it. 0m1.3s DEBUG: Created resolv.conf. 0m1.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpj5pvp4ex/tmp/scripts/ 0m1.3s INFO: Running scripts post_chroot_unpack 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'update'] 0m2.5s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s INFO: Running scripts post_setup 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat 0m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m4.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m4.5s INFO: Running scripts is_testable 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_test_root_password'] 0m4.5s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_test_root_password'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m4.7s DUMP: Package: gbrowse-calign Source: gbrowse Version: 2.56+dfsg-2 Installed-Size: 76 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.24.1-1), perlapi-5.24.1, libc6 (>= 2.4), gbrowse Description-en: CAlign helper Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). . This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Description-md5: 52106883c9df300bab833de801839ea2 Homepage: http://www.gbrowse.org/ Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.56+dfsg-2_amd64.deb Size: 35848 MD5sum: b7465ab97d2c9802d3a2575cd6bd2ef1 SHA256: 2a63dd4137a9d137c55ab55172211c8043417a312272f90a74e6d4effb1c7052 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m4.7s INFO: apt-cache knows about the following packages: gbrowse-calign 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy'] 0m4.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy', 'gbrowse-calign'] 0m4.8s DUMP: gbrowse-calign: Installed: (none) Candidate: 2.56+dfsg-2 Version table: 2.56+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy', 'gbrowse-calign'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m18.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core gbrowse libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbsd0 libcgi-pm-perl libcgi-session-perl libcommon-sense-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libexporter-tiny-perl libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgd-perl libgd3 libgdbm3 libgmp10 libgnutls30 libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 libldap-common liblist-moreutils-perl liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libncurses5 libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libp11-kit0 libperl5.24 libpng16-16 libprocps6 libreadline7 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssl1.0.2 libssl1.1 libstatistics-descriptive-perl libstring-approx-perl libtasn1-6 libterm-readkey-perl libtiff5 libtimedate-perl liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 lsb-base mime-support netbase openssl perl perl-modules-5.24 perl-openssl-defaults procps readline-common sqlite3 ucf Suggested packages: www-browser apache2-doc apache2-suexec-pristine | apache2-suexec-custom groff-base gbrowse-data libfile-nfslock-perl libev-perl libevent-perl libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl libclone-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools gnutls-bin libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make readline-doc sqlite3-doc Recommended packages: ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libapache-dbi-perl libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl libasync-interrupt-perl libev-perl | libevent-perl libguard-perl libbio-scf-perl libgd-svg-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl libhtml-format-perl javascript-common libjson-xs-perl libgpm2 libsasl2-modules libhtml-form-perl libmailtools-perl libxml-sax-expat-perl xml-core bzip2 file xz-utils rename psmisc The following NEW packages will be installed: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core gbrowse gbrowse-calign libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbsd0 libcgi-pm-perl libcgi-session-perl libcommon-sense-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libexporter-tiny-perl libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgd-perl libgd3 libgdbm3 libgmp10 libgnutls30 libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 libldap-common liblist-moreutils-perl liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libncurses5 libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libp11-kit0 libperl5.24 libpng16-16 libprocps6 libreadline7 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssl1.0.2 libssl1.1 libstatistics-descriptive-perl libstring-approx-perl libtasn1-6 libterm-readkey-perl libtiff5 libtimedate-perl liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 lsb-base mime-support netbase openssl perl perl-modules-5.24 perl-openssl-defaults procps readline-common sqlite3 ucf 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 43.5 MB of archives. After this operation, 153 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u7 [2723 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libgdbm3 amd64 1.8.3-14 [30.0 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libperl5.24 amd64 5.24.1-3+deb9u7 [3527 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 perl amd64 5.24.1-3+deb9u7 [218 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93.4 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libprocps6 amd64 2:3.3.12-3+deb9u1 [58.5 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 procps amd64 2:3.3.12-3+deb9u1 [250 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libapr1 amd64 1.5.2-5 [96.6 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libexpat1 amd64 2.2.0-2+deb9u3 [83.7 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u1 [1358 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libaprutil1 amd64 1.5.4-3 [85.8 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u1 [572 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libaprutil1-dbd-sqlite3 amd64 1.5.4-3 [19.3 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [253 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libnettle6 amd64 3.3-1+b2 [192 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libhogweed4 amd64 3.3-1+b2 [136 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libidn11 amd64 1.33-1+deb9u1 [115 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libp11-kit0 amd64 0.23.3-2 [111 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 libtasn1-6 amd64 4.10-1.1+deb9u1 [50.6 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libgnutls30 amd64 3.5.8-5+deb9u5 [896 kB] Get:24 http://deb.debian.org/debian stretch/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [68.4 kB] Get:25 http://deb.debian.org/debian stretch/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u1 [105 kB] Get:26 http://deb.debian.org/debian stretch/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u4 [85.7 kB] Get:27 http://deb.debian.org/debian stretch/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u4 [219 kB] Get:28 http://deb.debian.org/debian stretch/main amd64 libaprutil1-ldap amd64 1.5.4-3 [17.4 kB] Get:29 http://deb.debian.org/debian stretch/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:30 http://deb.debian.org/debian stretch/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u1 [79.2 kB] Get:31 http://deb.debian.org/debian stretch/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u1 [1304 kB] Get:32 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:33 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:34 http://deb.debian.org/debian stretch/main amd64 apache2-bin amd64 2.4.25-3+deb9u9 [1185 kB] Get:35 http://deb.debian.org/debian stretch/main amd64 apache2-utils amd64 2.4.25-3+deb9u9 [218 kB] Get:36 http://deb.debian.org/debian stretch/main amd64 apache2-data all 2.4.25-3+deb9u9 [162 kB] Get:37 http://deb.debian.org/debian stretch/main amd64 apache2 amd64 2.4.25-3+deb9u9 [237 kB] Get:38 http://deb.debian.org/debian stretch/main amd64 libxau6 amd64 1:1.0.8-1 [20.7 kB] Get:39 http://deb.debian.org/debian stretch/main amd64 readline-common all 7.0-3 [70.4 kB] Get:40 http://deb.debian.org/debian stretch/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:41 http://deb.debian.org/debian stretch/main amd64 netbase all 5.4 [19.1 kB] Get:42 http://deb.debian.org/debian stretch/main amd64 ucf all 3.0036 [70.2 kB] Get:43 http://deb.debian.org/debian stretch/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:44 http://deb.debian.org/debian stretch/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:45 http://deb.debian.org/debian stretch/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:46 http://deb.debian.org/debian stretch/main amd64 bioperl all 1.7.1-2 [422 kB] Get:47 http://deb.debian.org/debian stretch/main amd64 openssl amd64 1.1.0l-1~deb9u1 [749 kB] Get:48 http://deb.debian.org/debian stretch/main amd64 ca-certificates all 20200601~deb9u1 [160 kB] Get:49 http://deb.debian.org/debian stretch/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:50 http://deb.debian.org/debian stretch/main amd64 fontconfig-config all 2.11.0-6.7 [271 kB] Get:51 http://deb.debian.org/debian stretch/main amd64 libpng16-16 amd64 1.6.28-1+deb9u1 [280 kB] Get:52 http://deb.debian.org/debian stretch/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u1 [438 kB] Get:53 http://deb.debian.org/debian stretch/main amd64 libfontconfig1 amd64 2.11.0-6.7+b1 [331 kB] Get:54 http://deb.debian.org/debian stretch/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:55 http://deb.debian.org/debian stretch/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:56 http://deb.debian.org/debian stretch/main amd64 libtiff5 amd64 4.0.8-2+deb9u5 [239 kB] Get:57 http://deb.debian.org/debian stretch/main amd64 libwebp6 amd64 0.5.2-1 [235 kB] Get:58 http://deb.debian.org/debian stretch/main amd64 libbsd0 amd64 0.8.3-1 [83.0 kB] Get:59 http://deb.debian.org/debian stretch/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:60 http://deb.debian.org/debian stretch/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:61 http://deb.debian.org/debian stretch/main amd64 libx11-data all 2:1.6.4-3+deb9u1 [287 kB] Get:62 http://deb.debian.org/debian stretch/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u1 [748 kB] Get:63 http://deb.debian.org/debian stretch/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 libgd3 amd64 2.2.4-2+deb9u5 [132 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 libgd-perl amd64 2.53-3 [177 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 libbio-graphics-perl all 2.40-1 [611 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 libbio-coordinate-perl all 1.7.1-1 [56.0 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 liburi-perl all 1.71-1 [88.6 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 libhtml-parser-perl amd64 3.72-3 [104 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 libcgi-pm-perl all 4.35-1 [222 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 libcgi-session-perl all 4.48-3 [119 kB] Get:73 http://deb.debian.org/debian stretch/main amd64 libjson-perl all 2.90-1 [86.0 kB] Get:74 http://deb.debian.org/debian stretch/main amd64 libexporter-tiny-perl all 0.042-1 [32.4 kB] Get:75 http://deb.debian.org/debian stretch/main amd64 liblist-moreutils-perl amd64 0.416-1+b1 [63.0 kB] Get:76 http://deb.debian.org/debian stretch/main amd64 libstatistics-descriptive-perl all 3.0612-1 [41.9 kB] Get:77 http://deb.debian.org/debian stretch/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:78 http://deb.debian.org/debian stretch/main amd64 libtimedate-perl all 2.3000-2+deb9u1 [37.9 kB] Get:79 http://deb.debian.org/debian stretch/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:80 http://deb.debian.org/debian stretch/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:81 http://deb.debian.org/debian stretch/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:82 http://deb.debian.org/debian stretch/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:83 http://deb.debian.org/debian stretch/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:84 http://deb.debian.org/debian stretch/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:85 http://deb.debian.org/debian stretch/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:86 http://deb.debian.org/debian stretch/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:87 http://deb.debian.org/debian stretch/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:88 http://deb.debian.org/debian stretch/main amd64 libnet-ssleay-perl amd64 1.80-1 [285 kB] Get:89 http://deb.debian.org/debian stretch/main amd64 libio-socket-ssl-perl all 2.044-1 [195 kB] Get:90 http://deb.debian.org/debian stretch/main amd64 libnet-http-perl all 6.12-1 [23.8 kB] Get:91 http://deb.debian.org/debian stretch/main amd64 liblwp-protocol-https-perl all 6.06-2 [9582 B] Get:92 http://deb.debian.org/debian stretch/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:93 http://deb.debian.org/debian stretch/main amd64 libwww-perl all 6.15-1 [195 kB] Get:94 http://deb.debian.org/debian stretch/main amd64 libhttp-daemon-perl all 6.01-1 [17.3 kB] Get:95 http://deb.debian.org/debian stretch/main amd64 libterm-readkey-perl amd64 2.37-1 [27.2 kB] Get:96 http://deb.debian.org/debian stretch/main amd64 sqlite3 amd64 3.16.2-5+deb9u1 [784 kB] Get:97 http://deb.debian.org/debian stretch/main amd64 libdbi-perl amd64 1.636-1+b1 [766 kB] Get:98 http://deb.debian.org/debian stretch/main amd64 libdbd-sqlite3-perl amd64 1.54-1 [164 kB] Get:99 http://deb.debian.org/debian stretch/main amd64 libjs-prototype all 1.7.1-3 [44.3 kB] Get:100 http://deb.debian.org/debian stretch/main amd64 libjs-scriptaculous all 1.9.0-2 [129 kB] Get:101 http://deb.debian.org/debian stretch/main amd64 libanyevent-perl amd64 7.130-2 [391 kB] Get:102 http://deb.debian.org/debian stretch/main amd64 libanyevent-cachedns-perl all 0.08-2 [7150 B] Get:103 http://deb.debian.org/debian stretch/main amd64 libcommon-sense-perl amd64 3.74-2 [23.6 kB] Get:104 http://deb.debian.org/debian stretch/main amd64 libanyevent-http-perl all 2.23-1 [34.6 kB] Get:105 http://deb.debian.org/debian stretch/main amd64 libstring-approx-perl amd64 3.27-1+b4 [40.0 kB] Get:106 http://deb.debian.org/debian stretch/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:107 http://deb.debian.org/debian stretch/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:108 http://deb.debian.org/debian stretch/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:109 http://deb.debian.org/debian stretch/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-1+deb9u1 [338 kB] Get:110 http://deb.debian.org/debian stretch/main amd64 libxml-simple-perl all 2.22-1 [71.8 kB] Get:111 http://deb.debian.org/debian stretch/main amd64 libvm-ec2-perl all 1.28-2 [768 kB] Get:112 http://deb.debian.org/debian stretch/main amd64 gbrowse all 2.56+dfsg-2 [2373 kB] Get:113 http://deb.debian.org/debian stretch/main amd64 gbrowse-calign amd64 2.56+dfsg-2 [35.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.5 MB in 0s (67.2 MB/s) Selecting previously unselected package perl-modules-5.24. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.24_5.24.1-3+deb9u7_all.deb ... Unpacking perl-modules-5.24 (5.24.1-3+deb9u7) ... Selecting previously unselected package libgdbm3:amd64. Preparing to unpack .../001-libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) ... Selecting previously unselected package libperl5.24:amd64. 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Unpacking libxml-simple-perl (2.22-1) ... Selecting previously unselected package libvm-ec2-perl. Preparing to unpack .../110-libvm-ec2-perl_1.28-2_all.deb ... Unpacking libvm-ec2-perl (1.28-2) ... Selecting previously unselected package gbrowse. Preparing to unpack .../111-gbrowse_2.56+dfsg-2_all.deb ... Unpacking gbrowse (2.56+dfsg-2) ... Selecting previously unselected package gbrowse-calign. Preparing to unpack .../112-gbrowse-calign_2.56+dfsg-2_amd64.deb ... Unpacking gbrowse-calign (2.56+dfsg-2) ... Setting up libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Setting up libapr1:amd64 (1.5.2-5) ... Setting up readline-common (7.0-3) ... Setting up perl-modules-5.24 (5.24.1-3+deb9u7) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libperl5.24:amd64 (5.24.1-3+deb9u7) ... Setting up libnettle6:amd64 (3.3-1+b2) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u3) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u1) ... Setting up mime-support (3.60) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Setting up apache2-data (2.4.25-3+deb9u9) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u5) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Setting up lsb-base (9.20161125) ... Setting up procps (2:3.3.12-3+deb9u1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up perl (5.24.1-3+deb9u7) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up liburi-perl (1.71-1) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u1) ... Setting up libaprutil1:amd64 (1.5.4-3) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up libio-string-perl (1.08-3) ... Setting up libnet-http-perl (6.12-1) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libstring-approx-perl (3.27-1+b4) ... Setting up libjson-perl (2.90-1) ... Setting up libjs-prototype (1.7.1-3) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libwww-robotrules-perl (6.01-1) ... Setting up libdbi-perl (1.636-1+b1) ... Setting up libx11-data (2:1.6.4-3+deb9u1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libidn11:amd64 (1.33-1+deb9u1) ... Setting up netbase (5.4) ... Setting up libwebp6:amd64 (0.5.2-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libcommon-sense-perl (3.74-2) ... Setting up fontconfig-config (2.11.0-6.7) ... Setting up libdbd-sqlite3-perl (1.54-1) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libanyevent-perl (7.130-2) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Setting up libtimedate-perl (2.3000-2+deb9u1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up apache2-utils (2.4.25-3+deb9u9) ... Setting up libio-html-perl (1.001-1) ... Setting up libexporter-tiny-perl (0.042-1) ... Setting up libjs-scriptaculous (1.9.0-2) ... Setting up sqlite3 (3.16.2-5+deb9u1) ... Setting up libterm-readkey-perl (2.37-1) ... Setting up libhogweed4:amd64 (3.3-1+b2) ... Setting up libanyevent-http-perl (2.23-1) ... Setting up libp11-kit0:amd64 (0.23.3-2) ... Setting up libhtml-parser-perl (3.72-3) ... Setting up bioperl (1.7.1-2) ... Setting up libcgi-pm-perl (4.35-1) ... Setting up libxcb1:amd64 (1.12-1) ... Setting up libanyevent-cachedns-perl (0.08-2) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up liblist-moreutils-perl (0.416-1+b1) ... Setting up libfontconfig1:amd64 (2.11.0-6.7+b1) ... Setting up libstatistics-descriptive-perl (3.0612-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libnet-ssleay-perl (1.80-1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u5) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u1) ... Setting up libio-socket-ssl-perl (2.044-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libbio-coordinate-perl (1.7.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u4) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libaprutil1-ldap:amd64 (1.5.4-3) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up apache2-bin (2.4.25-3+deb9u9) ... Setting up libgd3:amd64 (2.2.4-2+deb9u5) ... Setting up libhttp-daemon-perl (6.01-1) ... Setting up libgd-perl (2.53-3) ... Setting up libxml-simple-perl (2.22-1) ... Setting up apache2 (2.4.25-3+deb9u9) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libbio-graphics-perl (2.40-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libwww-perl (6.15-1) ... Setting up libvm-ec2-perl (1.28-2) ... Setting up gbrowse (2.56+dfsg-2) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Setting up gbrowse-calign (2.56+dfsg-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m18.4s INFO: Running scripts post_install 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_install_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_install_exceptions'] 0m18.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m19.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m19.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpj5pvp4ex to stretch-lts 0m19.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main 0m19.3s INFO: Running scripts pre_distupgrade 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_exceptions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'update'] 0m20.7s DUMP: Get:1 http://security.debian.org stretch/updates InRelease [59.1 kB] Ign:2 http://deb.debian.org/debian stretch InRelease Hit:3 http://deb.debian.org/debian stretch Release Get:4 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:5 http://security.debian.org stretch/updates/main Translation-en [368 kB] Fetched 1209 kB in 0s (2172 kB/s) Reading package lists... 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'update'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-yf', 'dist-upgrade'] 0m30.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apache2 apache2-bin apache2-data apache2-utils apt ca-certificates debian-archive-keyring dpkg e2fslibs e2fsprogs gzip libapr1 libapt-pkg5.0 libbsd0 libcomerr2 libdbi-perl libexpat1 libfreetype6 libgcrypt20 libgmp10 libgnutls30 libhogweed4 libicu57 libjpeg62-turbo libldap-2.4-2 libldap-common liblz4-1 liblzma5 libnettle6 libnghttp2-14 libp11-kit0 libsasl2-2 libsasl2-modules-db libsqlite3-0 libss2 libssl1.0.2 libssl1.1 libsystemd0 libtiff5 libudev1 libwebp6 libx11-6 libx11-data libxml2 login openssl passwd sqlite3 tar zlib1g 50 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 30.2 MB of archives. After this operation, 93.2 kB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:11 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:12 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:13 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:14 http://security.debian.org stretch/updates/main amd64 libapr1 amd64 1.5.2-5+deb9u1 [96.8 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1+deb9u1 [253 kB] Get:16 http://security.debian.org stretch/updates/main amd64 libhogweed4 amd64 3.3-1+deb9u1 [136 kB] Get:17 http://security.debian.org stretch/updates/main amd64 libnettle6 amd64 3.3-1+deb9u1 [192 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libp11-kit0 amd64 0.23.3-2+deb9u1 [112 kB] Get:19 http://security.debian.org stretch/updates/main amd64 libgnutls30 amd64 3.5.8-5+deb9u6 [897 kB] Get:20 http://security.debian.org stretch/updates/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3+deb9u2 [68.5 kB] Get:21 http://security.debian.org stretch/updates/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3+deb9u2 [105 kB] Get:22 http://security.debian.org stretch/updates/main amd64 libldap-common all 2.4.44+dfsg-5+deb9u9 [86.3 kB] Get:23 http://security.debian.org stretch/updates/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-5+deb9u9 [220 kB] Get:24 http://security.debian.org stretch/updates/main amd64 libnghttp2-14 amd64 1.18.1-1+deb9u2 [79.4 kB] Get:25 http://security.debian.org stretch/updates/main amd64 libssl1.0.2 amd64 1.0.2u-1~deb9u7 [1305 kB] Get:26 http://security.debian.org stretch/updates/main amd64 libicu57 amd64 57.1-6+deb9u5 [7700 kB] Get:27 http://security.debian.org stretch/updates/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u7 [920 kB] Get:28 http://security.debian.org stretch/updates/main amd64 apache2 amd64 2.4.25-3+deb9u13 [237 kB] Get:29 http://security.debian.org stretch/updates/main amd64 apache2-bin amd64 2.4.25-3+deb9u13 [1186 kB] Get:30 http://security.debian.org stretch/updates/main amd64 apache2-utils amd64 2.4.25-3+deb9u13 [218 kB] Get:31 http://security.debian.org stretch/updates/main amd64 apache2-data all 2.4.25-3+deb9u13 [162 kB] Get:32 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:33 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:34 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:35 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:36 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] Get:37 http://security.debian.org stretch/updates/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u6 [1360 kB] Get:38 http://security.debian.org stretch/updates/main amd64 sqlite3 amd64 3.16.2-5+deb9u3 [782 kB] Get:39 http://security.debian.org stretch/updates/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u3 [574 kB] Get:40 http://security.debian.org stretch/updates/main amd64 openssl amd64 1.1.0l-1~deb9u6 [749 kB] Get:41 http://security.debian.org stretch/updates/main amd64 ca-certificates all 20200601~deb9u2 [168 kB] Get:42 http://security.debian.org stretch/updates/main amd64 libbsd0 amd64 0.8.3-1+deb9u1 [82.9 kB] Get:43 http://security.debian.org stretch/updates/main amd64 libdbi-perl amd64 1.636-1+deb9u2 [766 kB] Get:44 http://security.debian.org stretch/updates/main amd64 libexpat1 amd64 2.2.0-2+deb9u5 [84.7 kB] Get:45 http://security.debian.org stretch/updates/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u2 [438 kB] Get:46 http://security.debian.org stretch/updates/main amd64 libjpeg62-turbo amd64 1:1.5.1-2+deb9u2 [134 kB] Get:47 http://security.debian.org stretch/updates/main amd64 libtiff5 amd64 4.0.8-2+deb9u8 [239 kB] Get:48 http://security.debian.org stretch/updates/main amd64 libwebp6 amd64 0.5.2-1+deb9u1 [235 kB] Get:49 http://security.debian.org stretch/updates/main amd64 libx11-data all 2:1.6.4-3+deb9u4 [291 kB] Get:50 http://security.debian.org stretch/updates/main amd64 libx11-6 amd64 2:1.6.4-3+deb9u4 [748 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.2 MB in 0s (95.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12803 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1+deb9u1_amd64.deb ... Unpacking tar (1.29b-1.1+deb9u1) over (1.29b-1.1) ... Setting up tar (1.29b-1.1+deb9u1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12803 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fsprogs (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.43.4-2+deb9u2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12804 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.2-1.2+deb9u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.2-1.2+deb9u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.2-1.2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12803 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12803 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4.11_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.11) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12803 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.11_amd64.deb ... Unpacking apt (1.4.11) over (1.4.10) ... Setting up apt (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12803 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u14_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12803 files and directories currently installed.) Preparing to unpack .../00-libapr1_1.5.2-5+deb9u1_amd64.deb ... Unpacking libapr1:amd64 (1.5.2-5+deb9u1) over (1.5.2-5) ... Preparing to unpack .../01-libgmp10_2%3a6.1.2+dfsg-1+deb9u1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-1+deb9u1) over (2:6.1.2+dfsg-1) ... Preparing to unpack .../02-libhogweed4_3.3-1+deb9u1_amd64.deb ... Unpacking libhogweed4:amd64 (3.3-1+deb9u1) over (3.3-1+b2) ... Preparing to unpack .../03-libnettle6_3.3-1+deb9u1_amd64.deb ... Unpacking libnettle6:amd64 (3.3-1+deb9u1) over (3.3-1+b2) ... Preparing to unpack .../04-libp11-kit0_0.23.3-2+deb9u1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.3-2+deb9u1) over (0.23.3-2) ... Preparing to unpack .../05-libgnutls30_3.5.8-5+deb9u6_amd64.deb ... Unpacking libgnutls30:amd64 (3.5.8-5+deb9u6) over (3.5.8-5+deb9u5) ... Preparing to unpack .../06-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3+deb9u2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) over (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Preparing to unpack .../07-libsasl2-2_2.1.27~101-g0780600+dfsg-3+deb9u2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) over (2.1.27~101-g0780600+dfsg-3+deb9u1) ... Preparing to unpack .../08-libldap-common_2.4.44+dfsg-5+deb9u9_all.deb ... Unpacking libldap-common (2.4.44+dfsg-5+deb9u9) over (2.4.44+dfsg-5+deb9u4) ... Preparing to unpack .../09-libldap-2.4-2_2.4.44+dfsg-5+deb9u9_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u9) over (2.4.44+dfsg-5+deb9u4) ... Preparing to unpack .../10-libnghttp2-14_1.18.1-1+deb9u2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.18.1-1+deb9u2) over (1.18.1-1+deb9u1) ... Preparing to unpack .../11-libssl1.0.2_1.0.2u-1~deb9u7_amd64.deb ... Unpacking libssl1.0.2:amd64 (1.0.2u-1~deb9u7) over (1.0.2u-1~deb9u1) ... Preparing to unpack .../12-libicu57_57.1-6+deb9u5_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u5) over (57.1-6+deb9u4) ... Preparing to unpack .../13-libxml2_2.9.4+dfsg1-2.2+deb9u7_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) over (2.9.4+dfsg1-2.2+deb9u2) ... Preparing to unpack .../14-apache2_2.4.25-3+deb9u13_amd64.deb ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Unpacking apache2 (2.4.25-3+deb9u13) over (2.4.25-3+deb9u9) ... Preparing to unpack .../15-apache2-bin_2.4.25-3+deb9u13_amd64.deb ... Unpacking apache2-bin (2.4.25-3+deb9u13) over (2.4.25-3+deb9u9) ... Preparing to unpack .../16-apache2-utils_2.4.25-3+deb9u13_amd64.deb ... Unpacking apache2-utils (2.4.25-3+deb9u13) over (2.4.25-3+deb9u9) ... Preparing to unpack .../17-apache2-data_2.4.25-3+deb9u13_all.deb ... Unpacking apache2-data (2.4.25-3+deb9u13) over (2.4.25-3+deb9u9) ... Preparing to unpack .../18-libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12802 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12802 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking passwd (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up passwd (1:4.4-4.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12802 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u14_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libudev1:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12802 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u4) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12802 files and directories currently installed.) Preparing to unpack .../00-libssl1.1_1.1.0l-1~deb9u6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0l-1~deb9u6) over (1.1.0l-1~deb9u1) ... Preparing to unpack .../01-sqlite3_3.16.2-5+deb9u3_amd64.deb ... Unpacking sqlite3 (3.16.2-5+deb9u3) over (3.16.2-5+deb9u1) ... Preparing to unpack .../02-libsqlite3-0_3.16.2-5+deb9u3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.16.2-5+deb9u3) over (3.16.2-5+deb9u1) ... Preparing to unpack .../03-openssl_1.1.0l-1~deb9u6_amd64.deb ... Unpacking openssl (1.1.0l-1~deb9u6) over (1.1.0l-1~deb9u1) ... Preparing to unpack .../04-ca-certificates_20200601~deb9u2_all.deb ... Unpacking ca-certificates (20200601~deb9u2) over (20200601~deb9u1) ... Preparing to unpack .../05-libbsd0_0.8.3-1+deb9u1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.3-1+deb9u1) over (0.8.3-1) ... Preparing to unpack .../06-libdbi-perl_1.636-1+deb9u2_amd64.deb ... Unpacking libdbi-perl (1.636-1+deb9u2) over (1.636-1+b1) ... Preparing to unpack .../07-libexpat1_2.2.0-2+deb9u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-2+deb9u5) over (2.2.0-2+deb9u3) ... Preparing to unpack .../08-libfreetype6_2.6.3-3.2+deb9u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u2) over (2.6.3-3.2+deb9u1) ... Preparing to unpack .../09-libjpeg62-turbo_1%3a1.5.1-2+deb9u2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2+deb9u2) over (1:1.5.1-2) ... Preparing to unpack .../10-libtiff5_4.0.8-2+deb9u8_amd64.deb ... Unpacking libtiff5:amd64 (4.0.8-2+deb9u8) over (4.0.8-2+deb9u5) ... Preparing to unpack .../11-libwebp6_0.5.2-1+deb9u1_amd64.deb ... Unpacking libwebp6:amd64 (0.5.2-1+deb9u1) over (0.5.2-1) ... Preparing to unpack .../12-libx11-data_2%3a1.6.4-3+deb9u4_all.deb ... Unpacking libx11-data (2:1.6.4-3+deb9u4) over (2:1.6.4-3+deb9u1) ... Preparing to unpack .../13-libx11-6_2%3a1.6.4-3+deb9u4_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3+deb9u4) over (2:1.6.4-3+deb9u1) ... Setting up libapr1:amd64 (1.5.2-5+deb9u1) ... Setting up libnettle6:amd64 (3.3-1+deb9u1) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u5) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2+deb9u2) ... Setting up libnghttp2-14:amd64 (1.18.1-1+deb9u2) ... Processing triggers for mime-support (3.60) ... Setting up libldap-common (2.4.44+dfsg-5+deb9u9) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Setting up apache2-data (2.4.25-3+deb9u13) ... Setting up libtiff5:amd64 (4.0.8-2+deb9u8) ... Setting up libicu57:amd64 (57.1-6+deb9u5) ... Setting up libbsd0:amd64 (0.8.3-1+deb9u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u2) ... Setting up libssl1.0.2:amd64 (1.0.2u-1~deb9u7) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-1+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u6) ... Setting up libp11-kit0:amd64 (0.23.3-2+deb9u1) ... Setting up openssl (1.1.0l-1~deb9u6) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u3) ... Setting up ca-certificates (20200601~deb9u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libdbi-perl (1.636-1+deb9u2) ... Setting up libx11-data (2:1.6.4-3+deb9u4) ... Setting up libwebp6:amd64 (0.5.2-1+deb9u1) ... Setting up apache2-utils (2.4.25-3+deb9u13) ... Setting up libx11-6:amd64 (2:1.6.4-3+deb9u4) ... Setting up sqlite3 (3.16.2-5+deb9u3) ... Setting up libhogweed4:amd64 (3.3-1+deb9u1) ... Setting up libgnutls30:amd64 (3.5.8-5+deb9u6) ... Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u9) ... Setting up apache2-bin (2.4.25-3+deb9u13) ... Setting up apache2 (2.4.25-3+deb9u13) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-yf', 'dist-upgrade'] 0m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m31.2s DUMP: f0660a0a38f941b755664f52e8306b99 - 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m31.4s DUMP: Package: gbrowse-calign Source: gbrowse Version: 2.56+dfsg-2 Installed-Size: 76 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.24.1-1), perlapi-5.24.1, libc6 (>= 2.4), gbrowse Description-en: CAlign helper Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). . This package provides the CAlign helper for use with Realign. It speeds up Smith-Waterman alignment. Description-md5: 52106883c9df300bab833de801839ea2 Homepage: http://www.gbrowse.org/ Tag: devel::lang:c, devel::library, field::biology:bioinformatics, implemented-in::c, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.56+dfsg-2_amd64.deb Size: 35848 MD5sum: b7465ab97d2c9802d3a2575cd6bd2ef1 SHA256: 2a63dd4137a9d137c55ab55172211c8043417a312272f90a74e6d4effb1c7052 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'show', '--no-all-versions', 'gbrowse-calign'] 0m31.4s INFO: apt-cache knows about the following packages: gbrowse-calign 0m31.4s INFO: Running scripts pre_install 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_database-server'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_database-server'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_exceptions'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_exceptions'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_extras'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_extras'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy'] 0m31.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy', 'gbrowse-calign'] 0m31.6s DUMP: gbrowse-calign: Installed: 2.56+dfsg-2 Candidate: 2.56+dfsg-2 Version table: *** 2.56+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy', 'gbrowse-calign'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m31.9s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version (2.56+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-y', 'install', 'gbrowse-calign'] 0m31.9s INFO: Running scripts post_install 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_install_exceptions'] 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_install_exceptions'] 0m31.9s INFO: Running scripts post_distupgrade 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_exceptions'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_zz_backports'] 0m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_distupgrade_zz_backports'] 0m32.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m32.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m32.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m33.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m33.1s INFO: Running scripts pre_install 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_database-server'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_database-server'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_exceptions'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_extras'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_extras'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy'] 0m33.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy', 'gbrowse-calign'] 0m33.3s DUMP: gbrowse-calign: Installed: 2.56+dfsg-2 Candidate: 2.56+dfsg-2 Version table: *** 2.56+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-cache', 'policy', 'gbrowse-calign'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-y', 'install', 'gbrowse-calign=2.56+dfsg-2'] 0m33.6s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse-calign is already the newest version (2.56+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', '-y', 'install', 'gbrowse-calign=2.56+dfsg-2'] 0m33.6s INFO: Running scripts post_install 0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_install_exceptions'] 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_install_exceptions'] 0m33.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m34.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m35.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', '-ac', '--ignore-obsolete'] 0m36.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', '-ac', '--ignore-obsolete'] 0m36.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m36.1s DUMP: 0.15.6 0m36.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m36.1s INFO: Running adequate version 0.15.6 now. 0m36.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'gbrowse-calign'] 0m36.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'gbrowse-calign'] 0m36.1s INFO: Running scripts pre_remove 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_exceptions'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/pre_remove_exceptions'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m37.9s DUMP: install ok installed adduser adduser 3.115 install ok installed apache2 apache2 2.4.25-3+deb9u13 install ok installed apache2-bin apache2-bin 2.4.25-3+deb9u13 install ok installed apache2-data apache2-data 2.4.25-3+deb9u13 install ok installed apache2-utils apache2-utils 2.4.25-3+deb9u13 install ok installed apt apt 1.4.11 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bioperl bioperl 1.7.1-2 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed ca-certificates ca-certificates 20200601~deb9u2 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fontconfig-config fontconfig-config 2.11.0-6.7 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gbrowse gbrowse 2.56+dfsg-2 install ok installed gbrowse-calign gbrowse-calign 2.56+dfsg-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-2 install ok installed libanyevent-http-perl libanyevent-http-perl 2.23-1 install ok installed libanyevent-perl libanyevent-perl 7.130-2 install ok installed libapr1:amd64 libapr1 1.5.2-5+deb9u1 install ok installed libaprutil1:amd64 libaprutil1 1.5.4-3 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.5.4-3 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.5.4-3 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libbio-coordinate-perl libbio-coordinate-perl 1.7.1-1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.1-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbsd0:amd64 libbsd0 0.8.3-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.35-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-3 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libcommon-sense-perl libcommon-sense-perl 3.74-2 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdbd-sqlite3-perl libdbd-sqlite3-perl 1.54-1 install ok installed libdbi-perl libdbi-perl 1.636-1+deb9u2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u5 install ok installed libexporter-tiny-perl libexporter-tiny-perl 0.042-1 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.11.0-6.7+b1 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u2 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgd-perl libgd-perl 2.53-3 install ok installed libgd3:amd64 libgd3 2.2.4-2+deb9u5 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-14 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-1+deb9u1 install ok installed libgnutls30:amd64 libgnutls30 3.5.8-5+deb9u6 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libhogweed4:amd64 libhogweed4 3.3-1+deb9u1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.03-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.01-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.11-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.00-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u5 install ok installed libidn11:amd64 libidn11 1.33-1+deb9u1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.044-1 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.1-2+deb9u2 install ok installed libjs-prototype libjs-prototype 1.7.1-3 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2 install ok installed libjson-perl libjson-perl 2.90-1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.44+dfsg-5+deb9u9 install ok installed libldap-common libldap-common 2.4.44+dfsg-5+deb9u9 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b1 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.06-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncurses5:amd64 libncurses5 6.0+20161126-1+deb9u2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnet-http-perl libnet-http-perl 6.12-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.80-1 install ok installed libnettle6:amd64 libnettle6 3.3-1+deb9u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.18.1-1+deb9u2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.3-2+deb9u1 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libperl5.24:amd64 libperl5.24 5.24.1-3+deb9u7 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libprocps6:amd64 libprocps6 2:3.3.12-3+deb9u1 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3+deb9u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3+deb9u2 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u3 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libssl1.0.2:amd64 libssl1.0.2 1.0.2u-1~deb9u7 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u6 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0612-1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libstring-approx-perl libstring-approx-perl 3.27-1+b4 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libtasn1-6:amd64 libtasn1-6 4.10-1.1+deb9u1 install ok installed libterm-readkey-perl libterm-readkey-perl 2.37-1 install ok installed libtiff5:amd64 libtiff5 4.0.8-2+deb9u8 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb9u1 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed liburi-perl liburi-perl 1.71-1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-2 install ok installed libwebp6:amd64 libwebp6 0.5.2-1+deb9u1 install ok installed libwww-perl libwww-perl 6.15-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.01-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.4-3+deb9u4 install ok installed libx11-data libx11-data 2:1.6.4-3+deb9u4 install ok installed libxau6:amd64 libxau6 1:1.0.8-1 install ok installed libxcb1:amd64 libxcb1 1.12-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0128+dfsg-1+deb9u1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.11-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.07-1 install ok installed libxml-sax-perl libxml-sax-perl 0.99+dfsg-2 install ok installed libxml-simple-perl libxml-simple-perl 2.22-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u7 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed lsb-base lsb-base 9.20161125 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed netbase netbase 5.4 install ok installed openssl openssl 1.1.0l-1~deb9u6 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl perl 5.24.1-3+deb9u7 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed perl-modules-5.24 perl-modules-5.24 5.24.1-3+deb9u7 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed procps procps 2:3.3.12-3+deb9u1 install ok installed readline-common readline-common 7.0-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sqlite3 sqlite3 3.16.2-5+deb9u3 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed ucf ucf 3.0036 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'remove', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'gbrowse', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbsd0:amd64', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcommon-sense-perl', 'libdata-stag-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libreadline7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'lsb-base', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sqlite3', 'ucf', 'gbrowse-calign'] 0m40.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core gbrowse gbrowse-calign libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-coordinate-perl libbio-graphics-perl libbio-perl-perl libbsd0 libcgi-pm-perl libcgi-session-perl libcommon-sense-perl libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl libexpat1 libexporter-tiny-perl libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgd-perl libgd3 libgdbm3 libgmp10 libgnutls30 libhogweed4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libidn11 libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 libldap-common liblist-moreutils-perl liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libncurses5 libnet-http-perl libnet-ssleay-perl libnettle6 libnghttp2-14 libp11-kit0 libperl5.24 libpng16-16 libprocps6 libreadline7 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssl1.0.2 libssl1.1 libstatistics-descriptive-perl libstring-approx-perl libtasn1-6 libterm-readkey-perl libtiff5 libtimedate-perl liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 lsb-base mime-support netbase openssl perl perl-modules-5.24 perl-openssl-defaults procps readline-common sqlite3 ucf 0 upgraded, 0 newly installed, 113 to remove and 0 not upgraded. After this operation, 153 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12813 files and directories currently installed.) Removing gbrowse-calign (2.56+dfsg-2) ... Removing gbrowse (2.56+dfsg-2) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.25-3+deb9u13) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing apache2-bin (2.4.25-3+deb9u13) ... dpkg: warning: while removing apache2-bin, directory '/var/lib/apache2' not empty so not removed Removing apache2-data (2.4.25-3+deb9u13) ... Removing apache2-utils (2.4.25-3+deb9u13) ... Removing libbio-coordinate-perl (1.7.1-1) ... Removing libbio-graphics-perl (2.40-1) ... Removing bioperl (1.7.1-2) ... Removing libvm-ec2-perl (1.28-2) ... Removing libgd-perl (2.53-3) ... Removing libgd3:amd64 (2.2.4-2+deb9u5) ... Removing libfontconfig1:amd64 (2.11.0-6.7+b1) ... Removing fontconfig-config (2.11.0-6.7) ... Removing fonts-dejavu-core (2.37-1) ... Removing libanyevent-cachedns-perl (0.08-2) ... Removing libanyevent-http-perl (2.23-1) ... Removing libanyevent-perl (7.130-2) ... Removing libaprutil1-ldap:amd64 (1.5.4-3) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.5.4-3) ... Removing libaprutil1:amd64 (1.5.4-3) ... Removing libapr1:amd64 (1.5.2-5+deb9u1) ... Removing libbio-perl-perl (1.7.1-2) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libx11-6:amd64 (2:1.6.4-3+deb9u4) ... Removing libxcb1:amd64 (1.12-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.8.3-1+deb9u1) ... Removing libcgi-session-perl (4.48-3) ... Removing libcgi-pm-perl (4.35-1) ... Removing libcommon-sense-perl (3.74-2) ... Removing libdata-stag-perl (0.14-2) ... Removing libdbd-sqlite3-perl (1.54-1) ... Removing libdbi-perl (1.636-1+deb9u2) ... Removing libhttp-daemon-perl (6.01-1) ... Removing libexpat1:amd64 (2.2.0-2+deb9u5) ... Removing libstatistics-descriptive-perl (3.0612-1) ... Removing liblist-moreutils-perl (0.416-1+b1) ... Removing libexporter-tiny-perl (0.042-1) ... Removing libldap-2.4-2:amd64 (2.4.44+dfsg-5+deb9u9) ... Removing libgnutls30:amd64 (3.5.8-5+deb9u6) ... Removing libp11-kit0:amd64 (0.23.3-2+deb9u1) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u2) ... Removing libxml-simple-perl (2.22-1) ... Removing libxml-libxml-perl (2.0128+dfsg-1+deb9u1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libhogweed4:amd64 (3.3-1+deb9u1) ... Removing libgmp10:amd64 (2:6.1.2+dfsg-1+deb9u1) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Removing libicu57:amd64 (57.1-6+deb9u5) ... Removing libidn11:amd64 (1.33-1+deb9u1) ... Removing libio-string-perl (1.08-3) ... Removing libtiff5:amd64 (4.0.8-2+deb9u8) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.1-2+deb9u2) ... Removing libjs-scriptaculous (1.9.0-2) ... Removing libjs-prototype (1.7.1-3) ... Removing libjson-perl (2.90-1) ... Removing libldap-common (2.4.44+dfsg-5+deb9u9) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing procps (2:3.3.12-3+deb9u1) ... Removing libncurses5:amd64 (6.0+20161126-1+deb9u2) ... Removing libnettle6:amd64 (3.3-1+deb9u1) ... Removing libnghttp2-14:amd64 (1.18.1-1+deb9u2) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libprocps6:amd64 (2:3.3.12-3+deb9u1) ... Removing sqlite3 (3.16.2-5+deb9u3) ... Removing libreadline7:amd64 (7.0-3) ... Removing libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Removing libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3+deb9u2) ... Removing libsqlite3-0:amd64 (3.16.2-5+deb9u3) ... Removing libssl1.0.2:amd64 (1.0.2u-1~deb9u7) ... Removing libstring-approx-perl (3.27-1+b4) ... Removing libtasn1-6:amd64 (4.10-1.1+deb9u1) ... Removing libterm-readkey-perl (2.37-1) ... Removing libwebp6:amd64 (0.5.2-1+deb9u1) ... Removing libx11-data (2:1.6.4-3+deb9u4) ... Removing libxau6:amd64 (1:1.0.8-1) ... Removing libxml-namespacesupport-perl (1.11-1) ... Removing libxml-sax-base-perl (1.07-1) ... Removing lsb-base (9.20161125) ... Removing mime-support (3.60) ... Removing readline-common (7.0-3) ... Removing ucf (3.0036) ... Removing libwww-perl (6.15-1) ... Removing libhttp-negotiate-perl (6.00-2) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.03-2) ... Removing libhtml-parser-perl (3.72-3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.01-1) ... Removing libwww-robotrules-perl (6.01-1) ... Removing liblwp-protocol-https-perl (6.06-2) ... Removing ca-certificates (20200601~deb9u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.11-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing libio-socket-ssl-perl (2.044-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnet-http-perl (6.12-1) ... Removing libnet-ssleay-perl (1.80-1) ... Removing openssl (1.1.0l-1~deb9u6) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u6) ... Removing libtimedate-perl (2.3000-2+deb9u1) ... Removing liburi-perl (1.71-1) ... Removing netbase (5.4) ... Removing perl (5.24.1-3+deb9u7) ... Removing libperl5.24:amd64 (5.24.1-3+deb9u7) ... Removing libgdbm3:amd64 (1.8.3-14) ... Removing perl-modules-5.24 (5.24.1-3+deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'remove', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'gbrowse', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbsd0:amd64', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcommon-sense-perl', 'libdata-stag-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libreadline7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'lsb-base', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sqlite3', 'ucf', 'gbrowse-calign'] 0m40.4s INFO: Running scripts post_remove 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_remove_exceptions'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_remove_exceptions'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--purge', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'gbrowse', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbsd0:amd64', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcommon-sense-perl', 'libdata-stag-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libreadline7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'lsb-base', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sqlite3', 'ucf'] 0m41.2s DUMP: (Reading database ... 4695 files and directories currently installed.) Purging configuration files for apache2 (2.4.25-3+deb9u13) ... dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed Purging configuration files for ca-certificates (20200601~deb9u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig-config (2.11.0-6.7) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... Purging configuration files for gbrowse (2.56+dfsg-2) ... dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libbio-coordinate-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm3 which isn't installed dpkg: warning: ignoring request to remove libgmp10 which isn't installed dpkg: warning: ignoring request to remove libgnutls30 which isn't installed dpkg: warning: ignoring request to remove libhogweed4 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.44+dfsg-5+deb9u9) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblua5.2-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libncurses5 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnettle6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libperl5.24 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libprocps6 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.0.2:amd64 (1.0.2u-1~deb9u7) ... Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u6) ... dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Purging configuration files for libxau6:amd64 (1:1.0.8-1) ... dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed Purging configuration files for libxml-sax-perl (0.99+dfsg-2) ... dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for mime-support (3.60) ... Purging configuration files for netbase (5.4) ... Purging configuration files for openssl (1.1.0l-1~deb9u6) ... Purging configuration files for perl (5.24.1-3+deb9u7) ... dpkg: warning: ignoring request to remove perl-modules-5.24 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed Purging configuration files for procps (2:3.3.12-3+deb9u1) ... Purging configuration files for readline-common (7.0-3) ... dpkg: warning: ignoring request to remove sqlite3 which isn't installed Purging configuration files for ucf (3.0036) ... 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--purge', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'gbrowse', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbsd0:amd64', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcommon-sense-perl', 'libdata-stag-perl', 'libdbd-sqlite3-perl', 'libdbi-perl', 'libencode-locale-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libffi6:amd64', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm3:amd64', 'libgmp10:amd64', 'libgnutls30:amd64', 'libhogweed4:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu57:amd64', 'libidn11:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libncurses5:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnettle6:amd64', 'libnghttp2-14:amd64', 'libp11-kit0:amd64', 'libperl5.24:amd64', 'libpng16-16:amd64', 'libprocps6:amd64', 'libreadline7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssl1.0.2:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libtasn1-6:amd64', 'libterm-readkey-perl', 'libtiff5:amd64', 'libtimedate-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'lsb-base', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.24', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sqlite3', 'ucf'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--purge', 'gbrowse-calign'] 0m41.2s DUMP: dpkg: warning: ignoring request to remove gbrowse-calign which isn't installed 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--purge', 'gbrowse-calign'] 0m41.2s INFO: Running scripts post_purge 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_purge_exceptions'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_purge_exceptions'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--purge', '--pending'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--purge', '--pending'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--remove', '--pending'] 0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg', '--remove', '--pending'] 0m41.3s INFO: Running scripts post_test 0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_test_exceptions'] 0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'tmp/scripts/post_test_exceptions'] 0m41.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m41.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg-divert', '--list'] 0m41.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'dpkg-divert', '--list'] 0m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'clean'] 0m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex', 'apt-get', 'clean'] 0m41.5s DEBUG: Recording chroot state 0m42.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/shm'] 0m42.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/shm'] 0m42.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/console'] 0m42.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/console'] 0m42.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/ptmx'] 0m42.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/ptmx'] 0m42.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/pts'] 0m42.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/dev/pts'] 0m42.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/proc'] 0m42.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex/proc'] 0m42.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m42.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj5pvp4ex'] 0m42.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpj5pvp4ex 0m42.3s INFO: PASS: Upgrading between Debian distributions. 0m42.3s INFO: PASS: All tests. 0m42.3s INFO: piuparts run ends. ret=0 End: 2023-02-27 01:07:24 GMT