Start: 2022-12-18 23:36:03 GMT [stretch] Package: libbamtools-dev Source: bamtools Version: 2.4.1+dfsg-1 Installed-Size: 1470 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbamtools2.4.0 (= 2.4.1+dfsg-1), zlib1g-dev Suggests: libbamtools-doc (= 2.4.1+dfsg-1) Description: C++ API for manipulating BAM (genome alignment) files Homepage: https://github.com/pezmaster31/bamtools/wiki Description-md5: 071b9c0ea5e1e93a613add87519c2ca9 Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/b/bamtools/libbamtools-dev_2.4.1+dfsg-1_amd64.deb Size: 228710 MD5sum: 7edf357a4f396c42f89df15cae5be392 SHA256: 52f8c58594e6643c265bc47d58d67cd0f3d2fd45c81394540d9d0ae6ae3c123c [stretch-lts] Package: libbamtools-dev Source: bamtools Version: 2.4.1+dfsg-1 Installed-Size: 1470 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbamtools2.4.0 (= 2.4.1+dfsg-1), zlib1g-dev Suggests: libbamtools-doc (= 2.4.1+dfsg-1) Description: C++ API for manipulating BAM (genome alignment) files Homepage: https://github.com/pezmaster31/bamtools/wiki Description-md5: 071b9c0ea5e1e93a613add87519c2ca9 Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/b/bamtools/libbamtools-dev_2.4.1+dfsg-1_amd64.deb Size: 228710 MD5sum: 7edf357a4f396c42f89df15cae5be392 SHA256: 52f8c58594e6643c265bc47d58d67cd0f3d2fd45c81394540d9d0ae6ae3c123c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt libbamtools-dev=2.4.1+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt libbamtools-dev=2.4.1+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvg1k2z6n 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvg1k2z6n 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvg1k2z6n/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'update'] 0m2.5s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.8s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s INFO: Running scripts pre_test 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_test_root_password'] 0m4.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_test_root_password'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'show', '--no-all-versions', 'libbamtools-dev'] 0m4.3s DUMP: Package: libbamtools-dev Source: bamtools Version: 2.4.1+dfsg-1 Installed-Size: 1470 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbamtools2.4.0 (= 2.4.1+dfsg-1), zlib1g-dev Suggests: libbamtools-doc (= 2.4.1+dfsg-1) Description-en: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package. Description-md5: 071b9c0ea5e1e93a613add87519c2ca9 Homepage: https://github.com/pezmaster31/bamtools/wiki Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/b/bamtools/libbamtools-dev_2.4.1+dfsg-1_amd64.deb Size: 228710 MD5sum: 7edf357a4f396c42f89df15cae5be392 SHA256: 52f8c58594e6643c265bc47d58d67cd0f3d2fd45c81394540d9d0ae6ae3c123c 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'show', '--no-all-versions', 'libbamtools-dev'] 0m4.3s INFO: apt-cache knows about the following packages: libbamtools-dev 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy'] 0m4.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy', 'libbamtools-dev'] 0m4.4s DUMP: libbamtools-dev: Installed: (none) Candidate: 2.4.1+dfsg-1 Version table: 2.4.1+dfsg-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy', 'libbamtools-dev'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-y', 'install', 'libbamtools-dev'] 0m5.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libbamtools2.4.0 libc-dev-bin libc6-dev linux-libc-dev zlib1g-dev Suggested packages: libbamtools-doc glibc-doc manpages-dev Recommended packages: manpages manpages-dev The following NEW packages will be installed: libbamtools-dev libbamtools2.4.0 libc-dev-bin libc6-dev linux-libc-dev zlib1g-dev 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 4758 kB of archives. After this operation, 23.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libbamtools2.4.0 amd64 2.4.1+dfsg-1 [190 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libbamtools-dev amd64 2.4.1+dfsg-1 [229 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4758 kB in 0s (42.2 MB/s) Selecting previously unselected package libbamtools2.4.0. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../0-libbamtools2.4.0_2.4.1+dfsg-1_amd64.deb ... Unpacking libbamtools2.4.0 (2.4.1+dfsg-1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../1-libc-dev-bin_2.24-11+deb9u4_amd64.deb ... Unpacking libc-dev-bin (2.24-11+deb9u4) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../2-linux-libc-dev_4.9.228-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.9.228-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../3-libc6-dev_2.24-11+deb9u4_amd64.deb ... Unpacking libc6-dev:amd64 (2.24-11+deb9u4) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../4-zlib1g-dev_1%3a1.2.8.dfsg-5_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Selecting previously unselected package libbamtools-dev. Preparing to unpack .../5-libbamtools-dev_2.4.1+dfsg-1_amd64.deb ... Unpacking libbamtools-dev (2.4.1+dfsg-1) ... Setting up libbamtools2.4.0 (2.4.1+dfsg-1) ... Setting up linux-libc-dev:amd64 (4.9.228-1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libbamtools-dev (2.4.1+dfsg-1) ... 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-y', 'install', 'libbamtools-dev'] 0m5.6s INFO: Running scripts post_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_install_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_install_exceptions'] 0m5.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m6.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpvg1k2z6n to stretch-lts 0m6.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main 0m6.0s INFO: Running scripts pre_distupgrade 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'update'] 0m7.7s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Get:2 http://security.debian.org stretch/updates InRelease [59.1 kB] Hit:3 http://deb.debian.org/debian stretch Release Get:5 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:6 http://security.debian.org stretch/updates/main Translation-en [368 kB] Fetched 1209 kB in 0s (1890 kB/s) Reading package lists... 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'update'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-yf', 'dist-upgrade'] 0m11.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt debian-archive-keyring dpkg e2fslibs e2fsprogs gzip libapt-pkg5.0 libcomerr2 libgcrypt20 liblz4-1 liblzma5 libss2 libsystemd0 libudev1 linux-libc-dev login passwd tar zlib1g zlib1g-dev 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.4 MB of archives. After this operation, 279 kB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5+deb9u1 [205 kB] Get:11 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:12 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:13 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:14 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:16 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:17 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:19 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] Get:20 http://security.debian.org stretch/updates/main amd64 linux-libc-dev amd64 4.9.320-2 [1633 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.4 MB in 0s (45.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1+deb9u1_amd64.deb ... Unpacking tar (1.29b-1.1+deb9u1) over (1.29b-1.1) ... Setting up tar (1.29b-1.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.26_amd64.deb ... Unpacking dpkg (1.18.26) over (1.18.25) ... Setting up dpkg (1.18.26) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fslibs:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fslibs:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fsprogs (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../gzip_1.6-5+deb9u1_amd64.deb ... Unpacking gzip (1.6-5+deb9u1) over (1.6-5+b1) ... Setting up gzip (1.6-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5799 files and directories currently installed.) Preparing to unpack .../login_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking login (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up login (1:4.4-4.1+deb9u1) ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5799 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5+deb9u2_all.deb ... Unpacking debian-archive-keyring (2017.5+deb9u2) over (2017.5+deb9u1) ... Setting up debian-archive-keyring (2017.5+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5802 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+deb9u1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+deb9u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (0.0~r131-2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5801 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.2-1.2+deb9u1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.2-1.2+deb9u1) over (5.2.2-1.2+b1) ... Setting up liblzma5:amd64 (5.2.2-1.2+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4.11_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.11) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.11_amd64.deb ... Unpacking apt (1.4.11) over (1.4.10) ... Setting up apt (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u14_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking passwd (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up passwd (1:4.4-4.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u14_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libudev1:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u4) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5800 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.9.320-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.9.320-2) over (4.9.228-1) ... Setting up linux-libc-dev:amd64 (4.9.320-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5+deb9u1) ... 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-yf', 'dist-upgrade'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.9s DUMP: f0660a0a38f941b755664f52e8306b99 - 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'show', '--no-all-versions', 'libbamtools-dev'] 0m12.0s DUMP: Package: libbamtools-dev Source: bamtools Version: 2.4.1+dfsg-1 Installed-Size: 1470 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbamtools2.4.0 (= 2.4.1+dfsg-1), zlib1g-dev Suggests: libbamtools-doc (= 2.4.1+dfsg-1) Description-en: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package. Description-md5: 071b9c0ea5e1e93a613add87519c2ca9 Homepage: https://github.com/pezmaster31/bamtools/wiki Tag: devel::lang:c++, devel::library, implemented-in::c++, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/b/bamtools/libbamtools-dev_2.4.1+dfsg-1_amd64.deb Size: 228710 MD5sum: 7edf357a4f396c42f89df15cae5be392 SHA256: 52f8c58594e6643c265bc47d58d67cd0f3d2fd45c81394540d9d0ae6ae3c123c 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'show', '--no-all-versions', 'libbamtools-dev'] 0m12.0s INFO: apt-cache knows about the following packages: libbamtools-dev 0m12.0s INFO: Running scripts pre_install 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_database-server'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_database-server'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_exceptions'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_exceptions'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_extras'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_extras'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy'] 0m12.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy', 'libbamtools-dev'] 0m12.2s DUMP: libbamtools-dev: Installed: 2.4.1+dfsg-1 Candidate: 2.4.1+dfsg-1 Version table: *** 2.4.1+dfsg-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy', 'libbamtools-dev'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-y', 'install', 'libbamtools-dev'] 0m12.5s DUMP: Reading package lists... Building dependency tree... Reading state information... libbamtools-dev is already the newest version (2.4.1+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-y', 'install', 'libbamtools-dev'] 0m12.5s INFO: Running scripts post_install 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_install_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_install_exceptions'] 0m12.6s INFO: Running scripts post_distupgrade 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m12.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m12.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m13.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m13.2s INFO: Running scripts pre_install 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_database-server'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_database-server'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_exceptions'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_extras'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_extras'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy'] 0m13.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy', 'libbamtools-dev'] 0m13.3s DUMP: libbamtools-dev: Installed: 2.4.1+dfsg-1 Candidate: 2.4.1+dfsg-1 Version table: *** 2.4.1+dfsg-1 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-cache', 'policy', 'libbamtools-dev'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-y', 'install', 'libbamtools-dev=2.4.1+dfsg-1'] 0m13.6s DUMP: Reading package lists... Building dependency tree... Reading state information... libbamtools-dev is already the newest version (2.4.1+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', '-y', 'install', 'libbamtools-dev=2.4.1+dfsg-1'] 0m13.6s INFO: Running scripts post_install 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_install_exceptions'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_install_exceptions'] 0m13.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m13.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m14.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', '-ac', '--ignore-obsolete'] 0m14.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', '-ac', '--ignore-obsolete'] 0m14.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.8s DUMP: 0.15.6 0m14.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.8s INFO: Running adequate version 0.15.6 now. 0m14.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'libbamtools-dev'] 0m14.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'libbamtools-dev'] 0m14.8s INFO: Running scripts pre_remove 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_exceptions'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/pre_remove_exceptions'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.7s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.11 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libbamtools-dev libbamtools-dev 2.4.1+dfsg-1 install ok installed libbamtools2.4.0 libbamtools2.4.0 2.4.1+dfsg-1 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc-dev-bin libc-dev-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libc6-dev:amd64 libc6-dev 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.9.320-2 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.8.dfsg-5+deb9u1 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'remove', 'libbamtools2.4.0', 'libc-dev-bin', 'libc6-dev:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64', 'libbamtools-dev'] 0m16.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libbamtools-dev libbamtools2.4.0 libc-dev-bin libc6-dev linux-libc-dev zlib1g-dev 0 upgraded, 0 newly installed, 6 to remove and 0 not upgraded. After this operation, 24.0 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5822 files and directories currently installed.) Removing libbamtools-dev (2.4.1+dfsg-1) ... Removing libbamtools2.4.0 (2.4.1+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-5+deb9u1) ... Removing libc6-dev:amd64 (2.24-11+deb9u4) ... Removing libc-dev-bin (2.24-11+deb9u4) ... Removing linux-libc-dev:amd64 (4.9.320-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'remove', 'libbamtools2.4.0', 'libc-dev-bin', 'libc6-dev:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64', 'libbamtools-dev'] 0m16.3s INFO: Running scripts post_remove 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_remove_exceptions'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_remove_exceptions'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--purge', 'libbamtools2.4.0', 'libc-dev-bin', 'libc6-dev:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64'] 0m16.4s DUMP: dpkg: warning: ignoring request to remove libbamtools2.4.0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--purge', 'libbamtools2.4.0', 'libc-dev-bin', 'libc6-dev:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--purge', 'libbamtools-dev'] 0m16.4s DUMP: dpkg: warning: ignoring request to remove libbamtools-dev which isn't installed 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--purge', 'libbamtools-dev'] 0m16.4s INFO: Running scripts post_purge 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_purge_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_purge_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--purge', '--pending'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--purge', '--pending'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--remove', '--pending'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg', '--remove', '--pending'] 0m16.4s INFO: Running scripts post_test 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_test_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'tmp/scripts/post_test_exceptions'] 0m16.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m16.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg-divert', '--list'] 0m16.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'dpkg-divert', '--list'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'clean'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n', 'apt-get', 'clean'] 0m16.6s DEBUG: Recording chroot state 0m17.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/shm'] 0m17.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/shm'] 0m17.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/console'] 0m17.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/console'] 0m17.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/ptmx'] 0m17.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/ptmx'] 0m17.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/pts'] 0m17.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/dev/pts'] 0m17.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/proc'] 0m17.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n/proc'] 0m17.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m17.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvg1k2z6n'] 0m17.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvg1k2z6n 0m17.4s INFO: PASS: Upgrading between Debian distributions. 0m17.4s INFO: PASS: All tests. 0m17.4s INFO: piuparts run ends. ret=0 End: 2022-12-18 23:36:21 GMT