Start: 2023-03-04 06:42:51 GMT [stretch] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.8.1+dfsg-2 Installed-Size: 10618 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.8.1+dfsg-2), libkdf5-dev (= 2.8.1+dfsg-2), libncbi-wvdb-dev (= 2.8.1+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: fd5ca8c780df37503bf62c080a3cb857 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb Size: 1450208 MD5sum: a785c231942687663655c820d039e4dc SHA256: be31d4602cd02fcf05cf04d2630566811cd008eeec7762903388332da9aae8c2 [stretch-lts] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.8.1+dfsg-2 Installed-Size: 10618 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.8.1+dfsg-2), libkdf5-dev (= 2.8.1+dfsg-2), libncbi-wvdb-dev (= 2.8.1+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: fd5ca8c780df37503bf62c080a3cb857 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb Size: 1450208 MD5sum: a785c231942687663655c820d039e4dc SHA256: be31d4602cd02fcf05cf04d2630566811cd008eeec7762903388332da9aae8c2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt libncbi-vdb-dev=2.8.1+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt libncbi-vdb-dev=2.8.1+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzkcvg8ho 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzkcvg8ho 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzkcvg8ho/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'update'] 0m3.5s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'update'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m5.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m5.7s INFO: Running scripts is_testable 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/is_testable_uninstallable'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/is_testable_uninstallable'] 0m5.7s INFO: Running scripts pre_test 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_test_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_test_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_test_root_password'] 0m5.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_test_root_password'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m5.9s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.8.1+dfsg-2 Installed-Size: 10618 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.8.1+dfsg-2), libkdf5-dev (= 2.8.1+dfsg-2), libncbi-wvdb-dev (= 2.8.1+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) Much of the data submitted these days, for example in BAM, Illumina export.txt, and Complete Genomics formats, contain alignment information. With aligned data, NCBI uses Compression by Reference, which only stores the differences in base pairs between sequence data and the segment it aligns to. The process to restore original data, for example as FastQ, requires fast access to the reference sequences that the original data was aligned to. NCBI recommends that SRA users dedicate local disk space to store references downloaded from the NCBI SRA site. As of Fall 2014, the complete collection of these reference sequences is 66 GB. While it isn't usually necessary to download the entirety of the reference sequences, this should give you an idea of the scale of the storage requirement. By default, the Toolkit will download missing reference sequences on demand and cache them in the user's home directory. The location of this cache is configurable, as is whether the download is automatic or manual. . This is the development package. Description-md5: fd5ca8c780df37503bf62c080a3cb857 Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb Size: 1450208 MD5sum: a785c231942687663655c820d039e4dc SHA256: be31d4602cd02fcf05cf04d2630566811cd008eeec7762903388332da9aae8c2 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m5.9s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m5.9s INFO: Running scripts pre_install 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy'] 0m6.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m6.1s DUMP: libncbi-vdb-dev: Installed: (none) Candidate: 2.8.1+dfsg-2 Version table: 2.8.1+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m16.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran3 libhdf5-100 libicu57 libkdf5-2 libkdf5-dev libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev zlib1g-dev Suggested packages: glibc-doc manpages-dev libmbedtls-doc Recommended packages: bzip2-doc manpages manpages-dev xml-core The following NEW packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran3 libhdf5-100 libicu57 libkdf5-2 libkdf5-dev libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev zlib1g-dev 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 90.0 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libaec0 amd64 0.3.2-1 [18.5 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u4 [259 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 linux-libc-dev amd64 4.9.228-1 [1511 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u4 [2364 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libsz2 amd64 0.3.2-1 [5730 B] Get:11 http://deb.debian.org/debian stretch/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-3+deb9u1 [1282 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libmbedcrypto0 amd64 2.4.2-1+deb9u3 [171 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libmbedx509-0 amd64 2.4.2-1+deb9u3 [70.7 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 libmbedtls10 amd64 2.4.2-1+deb9u3 [102 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libmbedtls-dev amd64 2.4.2-1+deb9u3 [161 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libkdf5-2 amd64 2.8.1+dfsg-2 [13.6 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libkdf5-dev amd64 2.8.1+dfsg-2 [13.4 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 libncbi-vdb2 amd64 2.8.1+dfsg-2 [1037 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 libncbi-wvdb2 amd64 2.8.1+dfsg-2 [939 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 libncbi-wvdb-dev amd64 2.8.1+dfsg-2 [1067 kB] Get:21 http://deb.debian.org/debian stretch/main amd64 libaec-dev amd64 0.3.2-1 [17.4 kB] Get:22 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] Get:23 http://deb.debian.org/debian stretch/main amd64 libncbi-vdb-dev amd64 2.8.1+dfsg-2 [1450 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 6s (3149 kB/s) Selecting previously unselected package libicu57:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../01-libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../02-libaec0_0.3.2-1_amd64.deb ... Unpacking libaec0:amd64 (0.3.2-1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../03-libc-dev-bin_2.24-11+deb9u4_amd64.deb ... Unpacking libc-dev-bin (2.24-11+deb9u4) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../04-linux-libc-dev_4.9.228-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.9.228-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../05-libc6-dev_2.24-11+deb9u4_amd64.deb ... Unpacking libc6-dev:amd64 (2.24-11+deb9u4) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../06-libbz2-dev_1.0.6-8.1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-8.1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../07-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../08-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../09-libsz2_0.3.2-1_amd64.deb ... Unpacking libsz2:amd64 (0.3.2-1) ... Selecting previously unselected package libhdf5-100:amd64. Preparing to unpack .../10-libhdf5-100_1.10.0-patch1+docs-3+deb9u1_amd64.deb ... Unpacking libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Selecting previously unselected package libmbedcrypto0:amd64. Preparing to unpack .../11-libmbedcrypto0_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../12-libmbedx509-0_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedtls10:amd64. Preparing to unpack .../13-libmbedtls10_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libmbedtls-dev:amd64. Preparing to unpack .../14-libmbedtls-dev_2.4.2-1+deb9u3_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Selecting previously unselected package libkdf5-2. Preparing to unpack .../15-libkdf5-2_2.8.1+dfsg-2_amd64.deb ... Unpacking libkdf5-2 (2.8.1+dfsg-2) ... Selecting previously unselected package libkdf5-dev. Preparing to unpack .../16-libkdf5-dev_2.8.1+dfsg-2_amd64.deb ... Unpacking libkdf5-dev (2.8.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb2. Preparing to unpack .../17-libncbi-vdb2_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb2 (2.8.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb2. Preparing to unpack .../18-libncbi-wvdb2_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb2 (2.8.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb-dev. Preparing to unpack .../19-libncbi-wvdb-dev_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb-dev (2.8.1+dfsg-2) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../20-libaec-dev_0.3.2-1_amd64.deb ... Unpacking libaec-dev:amd64 (0.3.2-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../21-zlib1g-dev_1%3a1.2.8.dfsg-5_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Selecting previously unselected package libncbi-vdb-dev. Preparing to unpack .../22-libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb-dev (2.8.1+dfsg-2) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libaec0:amd64 (0.3.2-1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up linux-libc-dev:amd64 (4.9.228-1) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libmbedcrypto0:amd64 (2.4.2-1+deb9u3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libncbi-wvdb2 (2.8.1+dfsg-2) ... Setting up libmbedx509-0:amd64 (2.4.2-1+deb9u3) ... Setting up libc-dev-bin (2.24-11+deb9u4) ... Setting up libc6-dev:amd64 (2.24-11+deb9u4) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libbz2-dev:amd64 (1.0.6-8.1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Setting up libmbedtls10:amd64 (2.4.2-1+deb9u3) ... Setting up libncbi-wvdb-dev (2.8.1+dfsg-2) ... Setting up libaec-dev:amd64 (0.3.2-1) ... Setting up libncbi-vdb2 (2.8.1+dfsg-2) ... Setting up libmbedtls-dev:amd64 (2.4.2-1+deb9u3) ... Setting up libkdf5-2 (2.8.1+dfsg-2) ... Setting up libkdf5-dev (2.8.1+dfsg-2) ... Setting up libncbi-vdb-dev (2.8.1+dfsg-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m16.7s INFO: Running scripts post_install 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_install_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_install_exceptions'] 0m16.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m17.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m17.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpzkcvg8ho to stretch-lts 0m17.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main 0m17.4s INFO: Running scripts pre_distupgrade 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'update'] 0m19.1s DUMP: Get:1 http://security.debian.org stretch/updates InRelease [59.1 kB] Ign:2 http://deb.debian.org/debian stretch InRelease Hit:3 http://deb.debian.org/debian stretch Release Get:4 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:5 http://security.debian.org stretch/updates/main Translation-en [368 kB] Fetched 1209 kB in 0s (1914 kB/s) Reading package lists... 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'update'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-yf', 'dist-upgrade'] 0m25.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt debian-archive-keyring dpkg e2fslibs e2fsprogs gzip libapt-pkg5.0 libcomerr2 libgcrypt20 libicu57 liblz4-1 liblzma5 libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libss2 libsystemd0 libudev1 libxml2 linux-libc-dev login passwd tar zlib1g zlib1g-dev 26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After this operation, 286 kB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5+deb9u1 [205 kB] Get:11 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:12 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:13 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:14 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:16 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:17 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:19 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] Get:20 http://security.debian.org stretch/updates/main amd64 libicu57 amd64 57.1-6+deb9u5 [7700 kB] Get:21 http://security.debian.org stretch/updates/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u7 [920 kB] Get:22 http://security.debian.org stretch/updates/main amd64 libmbedtls-dev amd64 2.4.2-1+deb9u4 [162 kB] Get:23 http://security.debian.org stretch/updates/main amd64 libmbedx509-0 amd64 2.4.2-1+deb9u4 [71.0 kB] Get:24 http://security.debian.org stretch/updates/main amd64 libmbedtls10 amd64 2.4.2-1+deb9u4 [102 kB] Get:25 http://security.debian.org stretch/updates/main amd64 libmbedcrypto0 amd64 2.4.2-1+deb9u4 [172 kB] Get:26 http://security.debian.org stretch/updates/main amd64 linux-libc-dev amd64 4.9.320-2 [1633 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.6 MB in 0s (25.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1+deb9u1_amd64.deb ... Unpacking tar (1.29b-1.1+deb9u1) over (1.29b-1.1) ... Setting up tar (1.29b-1.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.26_amd64.deb ... Unpacking dpkg (1.18.26) over (1.18.25) ... Setting up dpkg (1.18.26) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.4-2+deb9u2_amd64.deb ... Unpacking e2fsprogs (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up e2fsprogs (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../gzip_1.6-5+deb9u1_amd64.deb ... Unpacking gzip (1.6-5+deb9u1) over (1.6-5+b1) ... Setting up gzip (1.6-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6425 files and directories currently installed.) Preparing to unpack .../login_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking login (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up login (1:4.4-4.1+deb9u1) ... Installing new version of config file /etc/securetty ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6425 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2017.5+deb9u2_all.deb ... Unpacking debian-archive-keyring (2017.5+deb9u2) over (2017.5+deb9u1) ... Setting up debian-archive-keyring (2017.5+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6428 files and directories currently installed.) Preparing to unpack .../liblz4-1_0.0~r131-2+deb9u1_amd64.deb ... Unpacking liblz4-1:amd64 (0.0~r131-2+deb9u1) over (0.0~r131-2+b1) ... Setting up liblz4-1:amd64 (0.0~r131-2+deb9u1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-5+deb9u1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) over (1:1.2.8.dfsg-5) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-5+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4.11_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.11) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.11_amd64.deb ... Unpacking apt (1.4.11) over (1.4.10) ... Setting up apt (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u14_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking passwd (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up passwd (1:4.4-4.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u14_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libudev1:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u4) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6426 files and directories currently installed.) Preparing to unpack .../0-libicu57_57.1-6+deb9u5_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u5) over (57.1-6+deb9u4) ... Preparing to unpack .../1-libxml2_2.9.4+dfsg1-2.2+deb9u7_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) over (2.9.4+dfsg1-2.2+deb9u2) ... Preparing to unpack .../2-libmbedtls-dev_2.4.2-1+deb9u4_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.4.2-1+deb9u4) over (2.4.2-1+deb9u3) ... Preparing to unpack .../3-libmbedx509-0_2.4.2-1+deb9u4_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.4.2-1+deb9u4) over (2.4.2-1+deb9u3) ... Preparing to unpack .../4-libmbedtls10_2.4.2-1+deb9u4_amd64.deb ... Unpacking libmbedtls10:amd64 (2.4.2-1+deb9u4) over (2.4.2-1+deb9u3) ... Preparing to unpack .../5-libmbedcrypto0_2.4.2-1+deb9u4_amd64.deb ... Unpacking libmbedcrypto0:amd64 (2.4.2-1+deb9u4) over (2.4.2-1+deb9u3) ... Preparing to unpack .../6-linux-libc-dev_4.9.320-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.9.320-2) over (4.9.228-1) ... Setting up linux-libc-dev:amd64 (4.9.320-2) ... Setting up libicu57:amd64 (57.1-6+deb9u5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Setting up libmbedcrypto0:amd64 (2.4.2-1+deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libmbedx509-0:amd64 (2.4.2-1+deb9u4) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5+deb9u1) ... Setting up libmbedtls10:amd64 (2.4.2-1+deb9u4) ... Setting up libmbedtls-dev:amd64 (2.4.2-1+deb9u4) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-yf', 'dist-upgrade'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.4s DUMP: f0660a0a38f941b755664f52e8306b99 - 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m25.8s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.8.1+dfsg-2 Installed-Size: 10618 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.8.1+dfsg-2), libkdf5-dev (= 2.8.1+dfsg-2), libncbi-wvdb-dev (= 2.8.1+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) Much of the data submitted these days, for example in BAM, Illumina export.txt, and Complete Genomics formats, contain alignment information. With aligned data, NCBI uses Compression by Reference, which only stores the differences in base pairs between sequence data and the segment it aligns to. The process to restore original data, for example as FastQ, requires fast access to the reference sequences that the original data was aligned to. NCBI recommends that SRA users dedicate local disk space to store references downloaded from the NCBI SRA site. As of Fall 2014, the complete collection of these reference sequences is 66 GB. While it isn't usually necessary to download the entirety of the reference sequences, this should give you an idea of the scale of the storage requirement. By default, the Toolkit will download missing reference sequences on demand and cache them in the user's home directory. The location of this cache is configurable, as is whether the download is automatic or manual. . This is the development package. Description-md5: fd5ca8c780df37503bf62c080a3cb857 Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.8.1+dfsg-2_amd64.deb Size: 1450208 MD5sum: a785c231942687663655c820d039e4dc SHA256: be31d4602cd02fcf05cf04d2630566811cd008eeec7762903388332da9aae8c2 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m25.8s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m25.8s INFO: Running scripts pre_install 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_database-server'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_database-server'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_exceptions'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_exceptions'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_extras'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_extras'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy'] 0m25.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m26.0s DUMP: libncbi-vdb-dev: Installed: 2.8.1+dfsg-2 Candidate: 2.8.1+dfsg-2 Version table: *** 2.8.1+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m26.5s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (2.8.1+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m26.5s INFO: Running scripts post_install 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_install_exceptions'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_install_exceptions'] 0m26.5s INFO: Running scripts post_distupgrade 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m26.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m26.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m27.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m27.4s INFO: Running scripts pre_install 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_database-server'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_database-server'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_exceptions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_exceptions'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_extras'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_extras'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy'] 0m27.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m27.6s DUMP: libncbi-vdb-dev: Installed: 2.8.1+dfsg-2 Candidate: 2.8.1+dfsg-2 Version table: *** 2.8.1+dfsg-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=2.8.1+dfsg-2'] 0m28.1s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (2.8.1+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=2.8.1+dfsg-2'] 0m28.1s INFO: Running scripts post_install 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_install_exceptions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_install_exceptions'] 0m28.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m28.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m28.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', '-ac', '--ignore-obsolete'] 0m30.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', '-ac', '--ignore-obsolete'] 0m30.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.8s DUMP: 0.15.6 0m30.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.8s INFO: Running adequate version 0.15.6 now. 0m30.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'libncbi-vdb-dev'] 0m31.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'libncbi-vdb-dev'] 0m31.1s INFO: Running scripts pre_remove 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_exceptions'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/pre_remove_exceptions'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.1s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.11 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libaec-dev:amd64 libaec-dev 0.3.2-1 install ok installed libaec0:amd64 libaec0 0.3.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc-dev-bin libc-dev-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libc6-dev:amd64 libc6-dev 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libhdf5-100:amd64 libhdf5-100 1.10.0-patch1+docs-3+deb9u1 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u5 install ok installed libkdf5-2 libkdf5-2 2.8.1+dfsg-2 install ok installed libkdf5-dev libkdf5-dev 2.8.1+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmbedcrypto0:amd64 libmbedcrypto0 2.4.2-1+deb9u4 install ok installed libmbedtls-dev:amd64 libmbedtls-dev 2.4.2-1+deb9u4 install ok installed libmbedtls10:amd64 libmbedtls10 2.4.2-1+deb9u4 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.4.2-1+deb9u4 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncbi-vdb-dev libncbi-vdb-dev 2.8.1+dfsg-2 install ok installed libncbi-vdb2 libncbi-vdb2 2.8.1+dfsg-2 install ok installed libncbi-wvdb-dev libncbi-wvdb-dev 2.8.1+dfsg-2 install ok installed libncbi-wvdb2 libncbi-wvdb2 2.8.1+dfsg-2 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libsz2:amd64 libsz2 0.3.2-1 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u7 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.9.320-2 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.8.dfsg-5+deb9u1 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'remove', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libhdf5-100:amd64', 'libicu57:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64', 'libncbi-vdb-dev'] 0m33.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran3 libhdf5-100 libicu57 libkdf5-2 libkdf5-dev libmbedcrypto0 libmbedtls-dev libmbedtls10 libmbedx509-0 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev zlib1g-dev 0 upgraded, 0 newly installed, 23 to remove and 0 not upgraded. After this operation, 90.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6448 files and directories currently installed.) Removing libncbi-vdb-dev (2.8.1+dfsg-2) ... Removing libaec-dev:amd64 (0.3.2-1) ... Removing libkdf5-dev (2.8.1+dfsg-2) ... Removing libkdf5-2 (2.8.1+dfsg-2) ... Removing libhdf5-100:amd64 (1.10.0-patch1+docs-3+deb9u1) ... Removing libsz2:amd64 (0.3.2-1) ... Removing libaec0:amd64 (0.3.2-1) ... Removing libbz2-dev:amd64 (1.0.6-8.1) ... Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-5+deb9u1) ... Removing libc6-dev:amd64 (2.24-11+deb9u4) ... Removing libc-dev-bin (2.24-11+deb9u4) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libncbi-wvdb-dev (2.8.1+dfsg-2) ... Removing libncbi-wvdb2 (2.8.1+dfsg-2) ... Removing libncbi-vdb2 (2.8.1+dfsg-2) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Removing libicu57:amd64 (57.1-6+deb9u5) ... Removing libmbedtls-dev:amd64 (2.4.2-1+deb9u4) ... Removing libmbedtls10:amd64 (2.4.2-1+deb9u4) ... Removing libmbedx509-0:amd64 (2.4.2-1+deb9u4) ... Removing libmbedcrypto0:amd64 (2.4.2-1+deb9u4) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing linux-libc-dev:amd64 (4.9.320-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'remove', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libhdf5-100:amd64', 'libicu57:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64', 'libncbi-vdb-dev'] 0m33.9s INFO: Running scripts post_remove 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_remove_exceptions'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_remove_exceptions'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libhdf5-100:amd64', 'libicu57:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64'] 0m33.9s DUMP: dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libhdf5-100 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libkdf5-2 which isn't installed dpkg: warning: ignoring request to remove libkdf5-dev which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto0 which isn't installed dpkg: warning: ignoring request to remove libmbedtls-dev which isn't installed dpkg: warning: ignoring request to remove libmbedtls10 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb2 which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb-dev which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb2 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran3:amd64', 'libhdf5-100:amd64', 'libicu57:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto0:amd64', 'libmbedtls-dev:amd64', 'libmbedtls10:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--purge', 'libncbi-vdb-dev'] 0m33.9s DUMP: dpkg: warning: ignoring request to remove libncbi-vdb-dev which isn't installed 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--purge', 'libncbi-vdb-dev'] 0m33.9s INFO: Running scripts post_purge 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_purge_exceptions'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_purge_exceptions'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--purge', '--pending'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--purge', '--pending'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--remove', '--pending'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg', '--remove', '--pending'] 0m33.9s INFO: Running scripts post_test 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_test_exceptions'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'tmp/scripts/post_test_exceptions'] 0m33.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m34.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg-divert', '--list'] 0m34.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'dpkg-divert', '--list'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'clean'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho', 'apt-get', 'clean'] 0m34.2s DEBUG: Recording chroot state 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/shm'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/shm'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/console'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/console'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/ptmx'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/ptmx'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/pts'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/dev/pts'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/proc'] 0m35.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho/proc'] 0m35.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m35.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzkcvg8ho'] 0m35.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzkcvg8ho 0m35.2s INFO: PASS: Upgrading between Debian distributions. 0m35.2s INFO: PASS: All tests. 0m35.2s INFO: piuparts run ends. ret=0 End: 2023-03-04 06:43:26 GMT