Start: 2023-02-24 19:09:51 GMT [stretch] Package: liggghts-doc Source: liggghts Version: 3.5.0+repack1-10 Installed-Size: 11257 Maintainer: Debian Science Maintainers Architecture: all Depends: mpi-default-bin Recommends: liggghts Description: Open Source DEM Particle Simulation Software. Dcoumentation and examples Homepage: http://www.liggghts.com/ Description-md5: 9a80c68d57f98a5a1ddbb552b022b84c Section: doc Priority: extra Filename: pool/main/l/liggghts/liggghts-doc_3.5.0+repack1-10_all.deb Size: 8426822 MD5sum: a2d90131fdb6592294e8c2db67a20ad1 SHA256: c5cf004839195a6cd65e332c55c88a90c05be55d05f67a3dbb81f9820438acac [stretch-lts] Package: liggghts-doc Source: liggghts Version: 3.5.0+repack1-10 Installed-Size: 11257 Maintainer: Debian Science Maintainers Architecture: all Depends: mpi-default-bin Recommends: liggghts Description: Open Source DEM Particle Simulation Software. Dcoumentation and examples Homepage: http://www.liggghts.com/ Description-md5: 9a80c68d57f98a5a1ddbb552b022b84c Section: doc Priority: extra Filename: pool/main/l/liggghts/liggghts-doc_3.5.0+repack1-10_all.deb Size: 8426822 MD5sum: a2d90131fdb6592294e8c2db67a20ad1 SHA256: c5cf004839195a6cd65e332c55c88a90c05be55d05f67a3dbb81f9820438acac Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt liggghts-doc=3.5.0+repack1-10 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt liggghts-doc=3.5.0+repack1-10 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpon7v1xxx 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpon7v1xxx 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpon7v1xxx/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'update'] 0m2.6s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m4.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m4.4s INFO: Running scripts is_testable 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s INFO: Running scripts pre_test 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'show', '--no-all-versions', 'liggghts-doc'] 0m4.6s DUMP: Package: liggghts-doc Source: liggghts Version: 3.5.0+repack1-10 Installed-Size: 11257 Maintainer: Debian Science Maintainers Architecture: all Depends: mpi-default-bin Recommends: liggghts Description-en: Open Source DEM Particle Simulation Software. Dcoumentation and examples LIGGGHTS stands for LAMMPS improved for general granular and granular heat transfer simulations. . LAMMPS is a classical molecular dynamics simulator. It is widely used in the field of Molecular Dynamics. Thanks to physical and algorithmic analogies, LAMMPS is a very good platform for DEM simulations. LAMMPS offers a GRANULAR package to perform these kind of simulations. LIGGGHTS aims to improve those capability with the goal to apply it to industrial applications. Development version. . The package contains documentation and examples. Description-md5: 9a80c68d57f98a5a1ddbb552b022b84c Homepage: http://www.liggghts.com/ Section: doc Priority: extra Filename: pool/main/l/liggghts/liggghts-doc_3.5.0+repack1-10_all.deb Size: 8426822 MD5sum: a2d90131fdb6592294e8c2db67a20ad1 SHA256: c5cf004839195a6cd65e332c55c88a90c05be55d05f67a3dbb81f9820438acac 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'show', '--no-all-versions', 'liggghts-doc'] 0m4.6s INFO: apt-cache knows about the following packages: liggghts-doc 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy'] 0m4.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy', 'liggghts-doc'] 0m4.7s DUMP: liggghts-doc: Installed: (none) Candidate: 3.5.0+repack1-10 Version table: 3.5.0+repack1-10 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy', 'liggghts-doc'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-y', 'install', 'liggghts-doc'] 0m9.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libfabric1 libgfortran3 libhwloc-plugins libhwloc5 libibverbs1 libicu57 libltdl7 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi2 libpciaccess0 libpsm-infinipath1 libquadmath0 librdmacm1 libxml2 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common Suggested packages: libhwloc-contrib-plugins pciutils opencl-icd gfortran Recommended packages: xml-core liggghts The following NEW packages will be installed: libfabric1 libgfortran3 libhwloc-plugins libhwloc5 libibverbs1 libicu57 libltdl7 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi2 libpciaccess0 libpsm-infinipath1 libquadmath0 librdmacm1 libxml2 liggghts-doc mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. Need to get 21.1 MB of archives. After this operation, 57.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian stretch/main amd64 libicu57 amd64 57.1-6+deb9u4 [7699 kB] Get:2 http://deb.debian.org/debian stretch/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u2 [920 kB] Get:3 http://deb.debian.org/debian stretch/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:4 http://deb.debian.org/debian stretch/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:5 http://deb.debian.org/debian stretch/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:6 http://deb.debian.org/debian stretch/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:7 http://deb.debian.org/debian stretch/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:8 http://deb.debian.org/debian stretch/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:9 http://deb.debian.org/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB] Get:10 http://deb.debian.org/debian stretch/main amd64 libgfortran3 amd64 6.3.0-18+deb9u1 [265 kB] Get:11 http://deb.debian.org/debian stretch/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:12 http://deb.debian.org/debian stretch/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:13 http://deb.debian.org/debian stretch/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:14 http://deb.debian.org/debian stretch/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:15 http://deb.debian.org/debian stretch/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:16 http://deb.debian.org/debian stretch/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:17 http://deb.debian.org/debian stretch/main amd64 libopenmpi2 amd64 2.0.2-2 [2008 kB] Get:18 http://deb.debian.org/debian stretch/main amd64 openmpi-common all 2.0.2-2 [149 kB] Get:19 http://deb.debian.org/debian stretch/main amd64 openmpi-bin amd64 2.0.2-2 [186 kB] Get:20 http://deb.debian.org/debian stretch/main amd64 mpi-default-bin amd64 1.8 [4050 B] Get:21 http://deb.debian.org/debian stretch/main amd64 liggghts-doc all 3.5.0+repack1-10 [8427 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.1 MB in 1s (13.6 MB/s) Selecting previously unselected package libicu57:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4411 files and directories currently installed.) Preparing to unpack .../00-libicu57_57.1-6+deb9u4_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../01-libxml2_2.9.4+dfsg1-2.2+deb9u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../02-libnl-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../03-libnl-route-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../04-libibverbs1_1.2.1-2_amd64.deb ... Unpacking libibverbs1 (1.2.1-2) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../05-libpsm-infinipath1_3.3+19.g67c0807.open-3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Selecting previously unselected package librdmacm1. Preparing to unpack .../06-librdmacm1_1.1.0-2_amd64.deb ... Unpacking librdmacm1 (1.1.0-2) ... Selecting previously unselected package libfabric1. Preparing to unpack .../07-libfabric1_1.4.0-1_amd64.deb ... Unpacking libfabric1 (1.4.0-1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../08-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../09-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../10-libltdl7_2.4.6-2_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../11-libnuma1_2.0.11-2.1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../12-libpciaccess0_0.13.4-1+b2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.4-1+b2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../13-ocl-icd-libopencl1_2.2.11-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../14-libhwloc5_1.11.5-1_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.5-1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../15-libhwloc-plugins_1.11.5-1_amd64.deb ... Unpacking libhwloc-plugins (1.11.5-1) ... Selecting previously unselected package libopenmpi2:amd64. Preparing to unpack .../16-libopenmpi2_2.0.2-2_amd64.deb ... Unpacking libopenmpi2:amd64 (2.0.2-2) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../17-openmpi-common_2.0.2-2_all.deb ... Unpacking openmpi-common (2.0.2-2) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../18-openmpi-bin_2.0.2-2_amd64.deb ... Unpacking openmpi-bin (2.0.2-2) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../19-mpi-default-bin_1.8_amd64.deb ... Unpacking mpi-default-bin (1.8) ... Selecting previously unselected package liggghts-doc. Preparing to unpack .../20-liggghts-doc_3.5.0+repack1-10_all.deb ... Unpacking liggghts-doc (3.5.0+repack1-10) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libicu57:amd64 (57.1-6+deb9u4) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up openmpi-common (2.0.2-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up libibverbs1 (1.2.1-2) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libfabric1 (1.4.0-1) ... Setting up libopenmpi2:amd64 (2.0.2-2) ... Setting up openmpi-bin (2.0.2-2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.8) ... Setting up liggghts-doc (3.5.0+repack1-10) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-y', 'install', 'liggghts-doc'] 0m9.8s INFO: Running scripts post_install 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_install_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_install_exceptions'] 0m9.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m10.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m10.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpon7v1xxx to stretch-lts 0m10.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main 0m10.1s INFO: Running scripts pre_distupgrade 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'update'] 0m11.7s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Get:4 http://security.debian.org stretch/updates InRelease [59.1 kB] Get:5 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:6 http://security.debian.org stretch/updates/main Translation-en [368 kB] Fetched 1209 kB in 0s (1934 kB/s) Reading package lists... 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'update'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-yf', 'dist-upgrade'] 0m16.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt debian-archive-keyring dpkg e2fslibs e2fsprogs gzip libapt-pkg5.0 libcomerr2 libgcrypt20 libicu57 liblz4-1 liblzma5 libss2 libsystemd0 libudev1 libxml2 login passwd tar zlib1g 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After this operation, 51.2 kB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:11 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:12 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:13 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:14 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:16 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:17 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] Get:19 http://security.debian.org stretch/updates/main amd64 libicu57 amd64 57.1-6+deb9u5 [7700 kB] Get:20 http://security.debian.org stretch/updates/main amd64 libxml2 amd64 2.9.4+dfsg1-2.2+deb9u7 [920 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.2 MB in 0s (64.3 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4.11_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.4.11) over (1.4.10) ... Setting up libapt-pkg5.0:amd64 (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4.11_amd64.deb ... Unpacking apt (1.4.11) over (1.4.10) ... Setting up apt (1.4.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../libsystemd0_232-25+deb9u14_amd64.deb ... Unpacking libsystemd0:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libsystemd0:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../libss2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libss2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libss2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.4-4.1+deb9u1_amd64.deb ... Unpacking passwd (1:4.4-4.1+deb9u1) over (1:4.4-4.1) ... Setting up passwd (1:4.4-4.1+deb9u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../libudev1_232-25+deb9u14_amd64.deb ... Unpacking libudev1:amd64 (232-25+deb9u14) over (232-25+deb9u12) ... Setting up libudev1:amd64 (232-25+deb9u14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-2+deb9u4_amd64.deb ... Unpacking libgcrypt20:amd64 (1.7.6-2+deb9u4) over (1.7.6-2+deb9u3) ... Setting up libgcrypt20:amd64 (1.7.6-2+deb9u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Preparing to unpack .../libicu57_57.1-6+deb9u5_amd64.deb ... Unpacking libicu57:amd64 (57.1-6+deb9u5) over (57.1-6+deb9u4) ... Preparing to unpack .../libxml2_2.9.4+dfsg1-2.2+deb9u7_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) over (2.9.4+dfsg1-2.2+deb9u2) ... Setting up libicu57:amd64 (57.1-6+deb9u5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-yf', 'dist-upgrade'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.0s DUMP: f0660a0a38f941b755664f52e8306b99 - 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'show', '--no-all-versions', 'liggghts-doc'] 0m17.2s DUMP: Package: liggghts-doc Source: liggghts Version: 3.5.0+repack1-10 Installed-Size: 11257 Maintainer: Debian Science Maintainers Architecture: all Depends: mpi-default-bin Recommends: liggghts Description-en: Open Source DEM Particle Simulation Software. Dcoumentation and examples LIGGGHTS stands for LAMMPS improved for general granular and granular heat transfer simulations. . LAMMPS is a classical molecular dynamics simulator. It is widely used in the field of Molecular Dynamics. Thanks to physical and algorithmic analogies, LAMMPS is a very good platform for DEM simulations. LAMMPS offers a GRANULAR package to perform these kind of simulations. LIGGGHTS aims to improve those capability with the goal to apply it to industrial applications. Development version. . The package contains documentation and examples. Description-md5: 9a80c68d57f98a5a1ddbb552b022b84c Homepage: http://www.liggghts.com/ Section: doc Priority: extra Filename: pool/main/l/liggghts/liggghts-doc_3.5.0+repack1-10_all.deb Size: 8426822 MD5sum: a2d90131fdb6592294e8c2db67a20ad1 SHA256: c5cf004839195a6cd65e332c55c88a90c05be55d05f67a3dbb81f9820438acac 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'show', '--no-all-versions', 'liggghts-doc'] 0m17.2s INFO: apt-cache knows about the following packages: liggghts-doc 0m17.2s INFO: Running scripts pre_install 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_database-server'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_database-server'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_exceptions'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_exceptions'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_extras'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_extras'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy'] 0m17.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy', 'liggghts-doc'] 0m17.3s DUMP: liggghts-doc: Installed: 3.5.0+repack1-10 Candidate: 3.5.0+repack1-10 Version table: *** 3.5.0+repack1-10 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy', 'liggghts-doc'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-y', 'install', 'liggghts-doc'] 0m17.6s DUMP: Reading package lists... Building dependency tree... Reading state information... liggghts-doc is already the newest version (3.5.0+repack1-10). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-y', 'install', 'liggghts-doc'] 0m17.6s INFO: Running scripts post_install 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_install_exceptions'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_install_exceptions'] 0m17.6s INFO: Running scripts post_distupgrade 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m18.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m18.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m18.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m18.3s INFO: Running scripts pre_install 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy'] 0m18.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy', 'liggghts-doc'] 0m18.5s DUMP: liggghts-doc: Installed: 3.5.0+repack1-10 Candidate: 3.5.0+repack1-10 Version table: *** 3.5.0+repack1-10 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-cache', 'policy', 'liggghts-doc'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-y', 'install', 'liggghts-doc=3.5.0+repack1-10'] 0m18.9s DUMP: Reading package lists... Building dependency tree... Reading state information... liggghts-doc is already the newest version (3.5.0+repack1-10). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', '-y', 'install', 'liggghts-doc=3.5.0+repack1-10'] 0m18.9s INFO: Running scripts post_install 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m19.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m19.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', '-ac', '--ignore-obsolete'] 0m20.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', '-ac', '--ignore-obsolete'] 0m20.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.3s DUMP: 0.15.6 0m20.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.3s INFO: Running adequate version 0.15.6 now. 0m20.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'liggghts-doc'] 0m20.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'liggghts-doc'] 0m20.4s INFO: Running scripts pre_remove 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/pre_remove_exceptions'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m22.1s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.11 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfabric1 libfabric1 1.4.0-1 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libhwloc-plugins libhwloc-plugins 1.11.5-1 install ok installed libhwloc5:amd64 libhwloc5 1.11.5-1 install ok installed libibverbs1 libibverbs1 1.2.1-2 install ok installed libicu57:amd64 libicu57 57.1-6+deb9u5 install ok installed libltdl7:amd64 libltdl7 2.4.6-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libnl-3-200:amd64 libnl-3-200 3.2.27-2 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.2.27-2 install ok installed libnuma1:amd64 libnuma1 2.0.11-2.1 install ok installed libopenmpi2:amd64 libopenmpi2 2.0.2-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpciaccess0:amd64 libpciaccess0 0.13.4-1+b2 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+19.g67c0807.open-3 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed librdmacm1 librdmacm1 1.1.0-2 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-2.2+deb9u7 install ok installed liggghts-doc liggghts-doc 3.5.0+repack1-10 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed mpi-default-bin mpi-default-bin 1.8 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.11-1 install ok installed openmpi-bin openmpi-bin 2.0.2-2 install ok installed openmpi-common openmpi-common 2.0.2-2 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'remove', 'libfabric1', 'libgfortran3:amd64', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libicu57:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi2:amd64', 'libpciaccess0:amd64', 'libpsm-infinipath1', 'libquadmath0:amd64', 'librdmacm1', 'libxml2:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'liggghts-doc'] 0m22.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libfabric1 libgfortran3 libhwloc-plugins libhwloc5 libibverbs1 libicu57 libltdl7 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi2 libpciaccess0 libpsm-infinipath1 libquadmath0 librdmacm1 libxml2 liggghts-doc mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 0 upgraded, 0 newly installed, 21 to remove and 0 not upgraded. After this operation, 57.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5938 files and directories currently installed.) Removing liggghts-doc (3.5.0+repack1-10) ... Removing mpi-default-bin (1.8) ... Removing openmpi-bin (2.0.2-2) ... Removing libopenmpi2:amd64 (2.0.2-2) ... Removing libfabric1 (1.4.0-1) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libhwloc-plugins (1.11.5-1) ... Removing libhwloc5:amd64 (1.11.5-1) ... Removing librdmacm1 (1.1.0-2) ... Removing libibverbs1 (1.2.1-2) ... Removing libxml2:amd64 (2.9.4+dfsg1-2.2+deb9u7) ... Removing libicu57:amd64 (57.1-6+deb9u5) ... Removing libltdl7:amd64 (2.4.6-2) ... Removing libnl-route-3-200:amd64 (3.2.27-2) ... Removing libnl-3-200:amd64 (3.2.27-2) ... Removing libnuma1:amd64 (2.0.11-2.1) ... Removing libpciaccess0:amd64 (0.13.4-1+b2) ... Removing libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.11-1) ... Removing openmpi-common (2.0.2-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'remove', 'libfabric1', 'libgfortran3:amd64', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libicu57:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi2:amd64', 'libpciaccess0:amd64', 'libpsm-infinipath1', 'libquadmath0:amd64', 'librdmacm1', 'libxml2:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'liggghts-doc'] 0m22.8s INFO: Running scripts post_remove 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_remove_exceptions'] 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_remove_exceptions'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--purge', 'libfabric1', 'libgfortran3:amd64', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libicu57:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi2:amd64', 'libpciaccess0:amd64', 'libpsm-infinipath1', 'libquadmath0:amd64', 'librdmacm1', 'libxml2:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common'] 0m22.8s DUMP: dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu57 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed (Reading database ... 4418 files and directories currently installed.) Purging configuration files for libnl-3-200:amd64 (3.2.27-2) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi2 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpsm-infinipath1 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (2.0.2-2) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--purge', 'libfabric1', 'libgfortran3:amd64', 'libhwloc-plugins', 'libhwloc5:amd64', 'libibverbs1', 'libicu57:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi2:amd64', 'libpciaccess0:amd64', 'libpsm-infinipath1', 'libquadmath0:amd64', 'librdmacm1', 'libxml2:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--purge', 'liggghts-doc'] 0m22.8s DUMP: dpkg: warning: ignoring request to remove liggghts-doc which isn't installed 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--purge', 'liggghts-doc'] 0m22.8s INFO: Running scripts post_purge 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_purge_exceptions'] 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_purge_exceptions'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--purge', '--pending'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--purge', '--pending'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--remove', '--pending'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg', '--remove', '--pending'] 0m22.9s INFO: Running scripts post_test 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_test_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'tmp/scripts/post_test_exceptions'] 0m22.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m23.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg-divert', '--list'] 0m23.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'dpkg-divert', '--list'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'clean'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx', 'apt-get', 'clean'] 0m23.1s DEBUG: Recording chroot state 0m23.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/shm'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/shm'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/console'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/console'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/ptmx'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/ptmx'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/pts'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/dev/pts'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/proc'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx/proc'] 0m23.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m23.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpon7v1xxx'] 0m23.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpon7v1xxx 0m23.9s INFO: PASS: Upgrading between Debian distributions. 0m23.9s INFO: PASS: All tests. 0m23.9s INFO: piuparts run ends. ret=0 End: 2023-02-24 19:10:15 GMT