Start: 2023-04-01 23:00:34 GMT [stretch] Package: python3-skbio Source: python-skbio Version: 0.5.1-2 Installed-Size: 3614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libssw0, ipython3, python3 (<< 3.6), python3 (>= 3.5~), python3-cachecontrol, python3-decorator, python3-lockfile, python3-matplotlib, python3-natsort, python3-nose, python3-numpy (>= 1:1.9.2), python3-pandas, python3-scipy, python3:any (>= 3.3.2-2~) Suggests: python-skbio-doc (= 0.5.1-2) Description: Python3 data structures, algorithms, educational resources for bioinformatic Homepage: https://github.com/biocore/scikit-bio Description-md5: 9caa43e0cee032d2bb48b12de52df499 Section: python Priority: optional Filename: pool/main/p/python-skbio/python3-skbio_0.5.1-2_amd64.deb Size: 558664 MD5sum: 757ee37a873ee2f48e6070dc383db50c SHA256: d0c3e5faa46f2c4b26d6d673afdf21c5640d1e1d94cc88e08014537c26607ef2 [stretch-lts] Package: python3-skbio Source: python-skbio Version: 0.5.1-2 Installed-Size: 3614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libssw0, ipython3, python3 (<< 3.6), python3 (>= 3.5~), python3-cachecontrol, python3-decorator, python3-lockfile, python3-matplotlib, python3-natsort, python3-nose, python3-numpy (>= 1:1.9.2), python3-pandas, python3-scipy, python3:any (>= 3.3.2-2~) Suggests: python-skbio-doc (= 0.5.1-2) Description: Python3 data structures, algorithms, educational resources for bioinformatic Homepage: https://github.com/biocore/scikit-bio Description-md5: 9caa43e0cee032d2bb48b12de52df499 Section: python Priority: optional Filename: pool/main/p/python-skbio/python3-skbio_0.5.1-2_amd64.deb Size: 558664 MD5sum: 757ee37a873ee2f48e6070dc383db50c SHA256: d0c3e5faa46f2c4b26d6d673afdf21c5640d1e1d94cc88e08014537c26607ef2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt python3-skbio=0.5.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz -d stretch -d stretch-lts -B /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat --apt python3-skbio=0.5.1-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvj0u75h0 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvj0u75h0 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/stretch_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvj0u75h0/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'update'] 0m2.6s DUMP: Ign:1 http://deb.debian.org/debian stretch InRelease Hit:2 http://deb.debian.org/debian stretch Release Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s DUMP: 660e5103244a20b75ca08c3f8741e16e - 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s INFO: Running scripts post_setup 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.10 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u1 install ok installed debianutils debianutils 4.8.1.1 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.25 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u1 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u1 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+b1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.10 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+b1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+b1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u12 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u12 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed passwd passwd 1:4.4-4.1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stretch2next/reference-chroot-metadata.dat 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'show', '--no-all-versions', 'python3-skbio'] 0m4.8s DUMP: Package: python3-skbio Source: python-skbio Version: 0.5.1-2 Installed-Size: 3614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libssw0, ipython3, python3 (<< 3.6), python3 (>= 3.5~), python3-cachecontrol, python3-decorator, python3-lockfile, python3-matplotlib, python3-natsort, python3-nose, python3-numpy (>= 1:1.9.2), python3-pandas, python3-scipy, python3:any (>= 3.3.2-2~) Suggests: python-skbio-doc (= 0.5.1-2) Description-en: Python3 data structures, algorithms, educational resources for bioinformatic Scikit-bio is a Python package providing data structures, algorithms, and educational resources for bioinformatics. . This is the package for Python3 Description-md5: 9caa43e0cee032d2bb48b12de52df499 Homepage: https://github.com/biocore/scikit-bio Section: python Priority: optional Filename: pool/main/p/python-skbio/python3-skbio_0.5.1-2_amd64.deb Size: 558664 MD5sum: 757ee37a873ee2f48e6070dc383db50c SHA256: d0c3e5faa46f2c4b26d6d673afdf21c5640d1e1d94cc88e08014537c26607ef2 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'show', '--no-all-versions', 'python3-skbio'] 0m4.8s INFO: apt-cache knows about the following packages: python3-skbio 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy'] 0m5.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy', 'python3-skbio'] 0m5.0s DUMP: python3-skbio: Installed: (none) Candidate: 0.5.1-2 Version table: 0.5.1-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy', 'python3-skbio'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-y', 'install', 'python3-skbio'] 0m31.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates dh-python fonts-lyx ipython3 libblas-common libblas3 libexpat1 libffi6 libfreetype6 libgfortran3 libjs-jquery libjs-jquery-ui liblapack3 libmpdec2 libpng16-16 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libssw0 mime-support openssl python python-matplotlib-data python-minimal python-pexpect python-ptyprocess python2.7 python2.7-minimal python3 python3-cachecontrol python3-chardet python3-cycler python3-dateutil python3-decorator python3-ipython python3-ipython-genutils python3-lockfile python3-matplotlib python3-minimal python3-natsort python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pexpect python3-pickleshare python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-simplegeneric python3-six python3-traitlets python3-tz python3-urllib3 python3-wcwidth python3.5 python3.5-minimal readline-common ttf-bitstream-vera tzdata Suggested packages: libdpkg-perl libjs-jquery-ui-docs python-doc python-tk python-pexpect-doc python2.7-doc binutils binfmt-support python3-doc python3-tk python3-venv python-cycler-doc python-lockfile-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt4 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python-pandas-doc python3-setuptools python-pyparsing-doc python3-cryptography python3-idna python3-openssl python3-socks python-scipy-doc python-skbio-doc python3.5-venv python3.5-doc readline-doc Recommended packages: javascript-common bzip2 file xz-utils python3-pil python3-tk python-natsort-doc python3-numexpr python3-tables python3-bs4 python3-html5lib python3-lxml g++ | c++-compiler The following NEW packages will be installed: ca-certificates dh-python fonts-lyx ipython3 libblas-common libblas3 libexpat1 libffi6 libfreetype6 libgfortran3 libjs-jquery libjs-jquery-ui liblapack3 libmpdec2 libpng16-16 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libssw0 mime-support openssl python python-matplotlib-data python-minimal python-pexpect python-ptyprocess python2.7 python2.7-minimal python3 python3-cachecontrol python3-chardet python3-cycler python3-dateutil python3-decorator python3-ipython python3-ipython-genutils python3-lockfile python3-matplotlib python3-minimal python3-natsort python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pexpect python3-pickleshare python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-simplegeneric python3-six python3-skbio python3-traitlets python3-tz python3-urllib3 python3-wcwidth python3.5 python3.5-minimal readline-common ttf-bitstream-vera tzdata 0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded. 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2.1.10+dfsg1-1 [88.6 kB] Get:64 http://deb.debian.org/debian stretch/main amd64 python3-tz all 2016.7-0.3 [27.1 kB] Get:65 http://deb.debian.org/debian stretch/main amd64 python3-numpy amd64 1:1.12.1-3 [1934 kB] Get:66 http://deb.debian.org/debian stretch/main amd64 python3-matplotlib amd64 2.0.0+dfsg1-2 [1590 kB] Get:67 http://deb.debian.org/debian stretch/main amd64 python3-natsort all 4.0.3-2 [25.1 kB] Get:68 http://deb.debian.org/debian stretch/main amd64 python3-nose all 1.3.7-2 [132 kB] Get:69 http://deb.debian.org/debian stretch/main amd64 python3-pandas-lib amd64 0.19.2-5.1 [2225 kB] Get:70 http://deb.debian.org/debian stretch/main amd64 python3-pandas all 0.19.2-5.1 [2615 kB] Get:71 http://deb.debian.org/debian stretch/main amd64 python3-scipy amd64 0.18.1-2 [8534 kB] Get:72 http://deb.debian.org/debian stretch/main amd64 python3-skbio amd64 0.5.1-2 [559 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.0 MB in 0s (62.0 MB/s) Selecting previously unselected package libpython2.7-minimal:amd64. 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Unpacking python3-simplegeneric (0.8.1-1) ... Selecting previously unselected package python3-ipython-genutils. Preparing to unpack .../15-python3-ipython-genutils_0.1.0-2_all.deb ... Unpacking python3-ipython-genutils (0.1.0-2) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../16-python3-traitlets_4.3.1-1_all.deb ... Unpacking python3-traitlets (4.3.1-1) ... Selecting previously unselected package python-ptyprocess. Preparing to unpack .../17-python-ptyprocess_0.5.1-1_all.deb ... Unpacking python-ptyprocess (0.5.1-1) ... Selecting previously unselected package python-pexpect. Preparing to unpack .../18-python-pexpect_4.2.1-1_all.deb ... Unpacking python-pexpect (4.2.1-1) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../19-python3-ipython_5.1.0-3_all.deb ... Unpacking python3-ipython (5.1.0-3) ... Selecting previously unselected package ipython3. Preparing to unpack .../20-ipython3_5.1.0-3_all.deb ... Unpacking ipython3 (5.1.0-3) ... Selecting previously unselected package libblas-common. Preparing to unpack .../21-libblas-common_3.7.0-2_amd64.deb ... Unpacking libblas-common (3.7.0-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../22-libquadmath0_6.3.0-18+deb9u1_amd64.deb ... Unpacking libquadmath0:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../23-libgfortran3_6.3.0-18+deb9u1_amd64.deb ... Unpacking libgfortran3:amd64 (6.3.0-18+deb9u1) ... Selecting previously unselected package libblas3. Preparing to unpack .../24-libblas3_3.7.0-2_amd64.deb ... Unpacking libblas3 (3.7.0-2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../25-libpng16-16_1.6.28-1+deb9u1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.28-1+deb9u1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../26-libfreetype6_2.6.3-3.2+deb9u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../27-libjs-jquery_3.1.1-2+deb9u1_all.deb ... Unpacking libjs-jquery (3.1.1-2+deb9u1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../28-libjs-jquery-ui_1.12.1+dfsg-4_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-4) ... Selecting previously unselected package liblapack3. Preparing to unpack .../29-liblapack3_3.7.0-2_amd64.deb ... Unpacking liblapack3 (3.7.0-2) ... Selecting previously unselected package libssw0:amd64. Preparing to unpack .../30-libssw0_1.1-1+b1_amd64.deb ... Unpacking libssw0:amd64 (1.1-1+b1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../31-ttf-bitstream-vera_1.10-8_all.deb ... Unpacking ttf-bitstream-vera (1.10-8) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../32-python-matplotlib-data_2.0.0+dfsg1-2_all.deb ... Unpacking python-matplotlib-data (2.0.0+dfsg1-2) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../33-python3-urllib3_1.19.1-1_all.deb ... Unpacking python3-urllib3 (1.19.1-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../34-python3-chardet_2.3.0-2_all.deb ... Unpacking python3-chardet (2.3.0-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../35-python3-requests_2.12.4-1_all.deb ... Unpacking python3-requests (2.12.4-1) ... Selecting previously unselected package python3-cachecontrol. Preparing to unpack .../36-python3-cachecontrol_0.11.7-1_all.deb ... Unpacking python3-cachecontrol (0.11.7-1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../37-python3-cycler_0.10.0-1_all.deb ... Unpacking python3-cycler (0.10.0-1) ... 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Unpacking python3-matplotlib (2.0.0+dfsg1-2) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../44-python3-natsort_4.0.3-2_all.deb ... Unpacking python3-natsort (4.0.3-2) ... Selecting previously unselected package python3-nose. Preparing to unpack .../45-python3-nose_1.3.7-2_all.deb ... Unpacking python3-nose (1.3.7-2) ... Selecting previously unselected package python3-pandas-lib. Preparing to unpack .../46-python3-pandas-lib_0.19.2-5.1_amd64.deb ... Unpacking python3-pandas-lib (0.19.2-5.1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../47-python3-pandas_0.19.2-5.1_all.deb ... Unpacking python3-pandas (0.19.2-5.1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../48-python3-scipy_0.18.1-2_amd64.deb ... Unpacking python3-scipy (0.18.1-2) ... Selecting previously unselected package python3-skbio. Preparing to unpack .../49-python3-skbio_0.5.1-2_amd64.deb ... Unpacking python3-skbio (0.5.1-2) ... Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ... Setting up libjs-jquery (3.1.1-2+deb9u1) ... Setting up readline-common (7.0-3) ... Setting up mime-support (3.60) ... Setting up libpng16-16:amd64 (1.6.28-1+deb9u1) ... Setting up libssw0:amd64 (1.1-1+b1) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libblas-common (3.7.0-2) ... Setting up tzdata (2020a-0+deb9u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 1 23:00:47 UTC 2023. Universal Time is now: Sat Apr 1 23:00:47 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgfortran3:amd64 (6.3.0-18+deb9u1) ... Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u1) ... Setting up libblas3 (3.7.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libjs-jquery-ui (1.12.1+dfsg-4) ... Setting up openssl (1.1.0l-1~deb9u1) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u1) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u3) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up fonts-lyx (2.2.2-1) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2) ... Setting up liblapack3 (3.7.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.3-1+deb9u1) ... Setting up python2.7 (2.7.13-2+deb9u3) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up python (2.7.13-2) ... Setting up python3.5 (3.5.3-1+deb9u1) ... Setting up libpython3-stdlib:amd64 (3.5.3-1) ... Setting up python-ptyprocess (0.5.1-1) ... Setting up python-pexpect (4.2.1-1) ... Setting up python3 (3.5.3-1) ... Setting up python3-numpy (1:1.12.1-3) ... Setting up python3-six (1.10.0-3) ... Setting up python3-pyparsing (2.1.10+dfsg1-1) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-pkg-resources (33.1.1-1) ... Setting up python3-pandas-lib (0.19.2-5.1) ... Setting up python3-wcwidth (0.1.7+dfsg1-1) ... Setting up python3-ipython-genutils (0.1.0-2) ... Setting up python3-nose (1.3.7-2) ... Setting up python3-chardet (2.3.0-2) ... Setting up python3-natsort (4.0.3-2) ... Setting up python3-lockfile (1:0.12.2-2) ... Setting up python3-urllib3 (1.19.1-1) ... Setting up dh-python (2.20170125) ... Setting up python3-decorator (4.0.11-1) ... Setting up python3-traitlets (4.3.1-1) ... Setting up python3-ptyprocess (0.5.1-1) ... Setting up python3-tz (2016.7-0.3) ... Setting up python3-dateutil (2.5.3-2) ... Setting up python3-pygments (2.2.0+dfsg-1) ... Setting up python3-pickleshare (0.7.4-1) ... Setting up python3-simplegeneric (0.8.1-1) ... Setting up python3-scipy (0.18.1-2) ... Setting up python3-prompt-toolkit (1.0.9-1) ... Setting up python3-pexpect (4.2.1-1) ... Setting up python3-requests (2.12.4-1) ... Setting up python3-pandas (0.19.2-5.1) ... Setting up python3-cachecontrol (0.11.7-1) ... Setting up python3-matplotlib (2.0.0+dfsg1-2) ... Setting up python3-ipython (5.1.0-3) ... Setting up ipython3 (5.1.0-3) ... Setting up python3-skbio (0.5.1-2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-y', 'install', 'python3-skbio'] 0m31.6s INFO: Running scripts post_install 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_install_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_install_exceptions'] 0m31.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m32.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m32.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpvj0u75h0 to stretch-lts 0m32.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ stretch main deb http://security.debian.org stretch/updates main 0m32.3s INFO: Running scripts pre_distupgrade 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_exceptions'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_exceptions'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'update'] 0m33.4s DUMP: Get:1 http://security.debian.org stretch/updates InRelease [59.1 kB] Ign:2 http://deb.debian.org/debian stretch InRelease Hit:3 http://deb.debian.org/debian stretch Release Get:4 http://security.debian.org stretch/updates/main amd64 Packages [782 kB] Get:5 http://security.debian.org stretch/updates/main Translation-en [368 kB] Fetched 1209 kB in 0s (3086 kB/s) Reading package lists... 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'update'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-yf', 'dist-upgrade'] 0m48.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt ca-certificates debian-archive-keyring dpkg e2fslibs e2fsprogs gzip ipython3 libapt-pkg5.0 libcomerr2 libexpat1 libfreetype6 libgcrypt20 libjs-jquery liblz4-1 liblzma5 libpython2.7-minimal libpython2.7-stdlib libpython3.5-minimal libpython3.5-stdlib libsqlite3-0 libss2 libssl1.1 libsystemd0 libudev1 login openssl passwd python2.7 python2.7-minimal python3-ipython python3-pygments python3-urllib3 python3.5 python3.5-minimal tar tzdata zlib1g 38 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 23.1 MB of archives. After this operation, 96.3 kB of additional disk space will be used. Get:1 http://security.debian.org stretch/updates/main amd64 tar amd64 1.29b-1.1+deb9u1 [760 kB] Get:2 http://security.debian.org stretch/updates/main amd64 dpkg amd64 1.18.26 [2117 kB] Get:3 http://security.debian.org stretch/updates/main amd64 e2fslibs amd64 1.43.4-2+deb9u2 [208 kB] Get:4 http://security.debian.org stretch/updates/main amd64 e2fsprogs amd64 1.43.4-2+deb9u2 [948 kB] Get:5 http://security.debian.org stretch/updates/main amd64 gzip amd64 1.6-5+deb9u1 [114 kB] Get:6 http://security.debian.org stretch/updates/main amd64 login amd64 1:4.4-4.1+deb9u1 [790 kB] Get:7 http://security.debian.org stretch/updates/main amd64 debian-archive-keyring all 2017.5+deb9u2 [92.4 kB] Get:8 http://security.debian.org stretch/updates/main amd64 liblz4-1 amd64 0.0~r131-2+deb9u1 [33.2 kB] Get:9 http://security.debian.org stretch/updates/main amd64 liblzma5 amd64 5.2.2-1.2+deb9u1 [234 kB] Get:10 http://security.debian.org stretch/updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-5+deb9u1 [87.8 kB] Get:11 http://security.debian.org stretch/updates/main amd64 libapt-pkg5.0 amd64 1.4.11 [917 kB] Get:12 http://security.debian.org stretch/updates/main amd64 apt amd64 1.4.11 [1232 kB] Get:13 http://security.debian.org stretch/updates/main amd64 libsystemd0 amd64 232-25+deb9u14 [282 kB] Get:14 http://security.debian.org stretch/updates/main amd64 python2.7 amd64 2.7.13-2+deb9u6 [286 kB] Get:15 http://security.debian.org stretch/updates/main amd64 libexpat1 amd64 2.2.0-2+deb9u5 [84.7 kB] Get:16 http://security.debian.org stretch/updates/main amd64 libsqlite3-0 amd64 3.16.2-5+deb9u3 [574 kB] Get:17 http://security.debian.org stretch/updates/main amd64 libssl1.1 amd64 1.1.0l-1~deb9u6 [1360 kB] Get:18 http://security.debian.org stretch/updates/main amd64 libpython2.7-stdlib amd64 2.7.13-2+deb9u6 [1898 kB] Get:19 http://security.debian.org stretch/updates/main amd64 python2.7-minimal amd64 2.7.13-2+deb9u6 [1382 kB] Get:20 http://security.debian.org stretch/updates/main amd64 libpython2.7-minimal amd64 2.7.13-2+deb9u6 [390 kB] Get:21 http://security.debian.org stretch/updates/main amd64 python3.5 amd64 3.5.3-1+deb9u5 [231 kB] Get:22 http://security.debian.org stretch/updates/main amd64 libpython3.5-stdlib amd64 3.5.3-1+deb9u5 [2167 kB] Get:23 http://security.debian.org stretch/updates/main amd64 python3.5-minimal amd64 3.5.3-1+deb9u5 [1692 kB] Get:24 http://security.debian.org stretch/updates/main amd64 libpython3.5-minimal amd64 3.5.3-1+deb9u5 [574 kB] Get:25 http://security.debian.org stretch/updates/main amd64 libcomerr2 amd64 1.43.4-2+deb9u2 [63.8 kB] Get:26 http://security.debian.org stretch/updates/main amd64 libss2 amd64 1.43.4-2+deb9u2 [68.0 kB] Get:27 http://security.debian.org stretch/updates/main amd64 passwd amd64 1:4.4-4.1+deb9u1 [997 kB] Get:28 http://security.debian.org stretch/updates/main amd64 libudev1 amd64 232-25+deb9u14 [126 kB] Get:29 http://security.debian.org stretch/updates/main amd64 libgcrypt20 amd64 1.7.6-2+deb9u4 [523 kB] Get:30 http://security.debian.org stretch/updates/main amd64 tzdata all 2021a-0+deb9u4 [281 kB] Get:31 http://security.debian.org stretch/updates/main amd64 openssl amd64 1.1.0l-1~deb9u6 [749 kB] Get:32 http://security.debian.org stretch/updates/main amd64 ca-certificates all 20200601~deb9u2 [168 kB] Get:33 http://security.debian.org stretch/updates/main amd64 python3-pygments all 2.2.0+dfsg-1+deb9u2 [588 kB] Get:34 http://security.debian.org stretch/updates/main amd64 ipython3 all 5.1.0-3+deb9u1 [6000 B] Get:35 http://security.debian.org stretch/updates/main amd64 python3-ipython all 5.1.0-3+deb9u1 [376 kB] Get:36 http://security.debian.org stretch/updates/main amd64 libfreetype6 amd64 2.6.3-3.2+deb9u2 [438 kB] Get:37 http://security.debian.org stretch/updates/main amd64 libjs-jquery all 3.1.1-2+deb9u2 [154 kB] Get:38 http://security.debian.org stretch/updates/main amd64 python3-urllib3 all 1.19.1-1+deb9u1 [78.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.1 MB in 0s (88.5 MB/s) (Reading database ... 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Preparing to unpack .../09-python3.5-minimal_3.5.3-1+deb9u5_amd64.deb ... Unpacking python3.5-minimal (3.5.3-1+deb9u5) over (3.5.3-1+deb9u1) ... Preparing to unpack .../10-libpython3.5-minimal_3.5.3-1+deb9u5_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.3-1+deb9u5) over (3.5.3-1+deb9u1) ... Preparing to unpack .../11-libcomerr2_1.43.4-2+deb9u2_amd64.deb ... Unpacking libcomerr2:amd64 (1.43.4-2+deb9u2) over (1.43.4-2+deb9u1) ... Setting up libcomerr2:amd64 (1.43.4-2+deb9u2) ... (Reading database ... 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Preparing to unpack .../3-python3-pygments_2.2.0+dfsg-1+deb9u2_all.deb ... Unpacking python3-pygments (2.2.0+dfsg-1+deb9u2) over (2.2.0+dfsg-1) ... Preparing to unpack .../4-ipython3_5.1.0-3+deb9u1_all.deb ... Unpacking ipython3 (5.1.0-3+deb9u1) over (5.1.0-3) ... Preparing to unpack .../5-python3-ipython_5.1.0-3+deb9u1_all.deb ... Unpacking python3-ipython (5.1.0-3+deb9u1) over (5.1.0-3) ... Preparing to unpack .../6-libfreetype6_2.6.3-3.2+deb9u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.6.3-3.2+deb9u2) over (2.6.3-3.2+deb9u1) ... Preparing to unpack .../7-libjs-jquery_3.1.1-2+deb9u2_all.deb ... Unpacking libjs-jquery (3.1.1-2+deb9u2) over (3.1.1-2+deb9u1) ... Preparing to unpack .../8-python3-urllib3_1.19.1-1+deb9u1_all.deb ... Unpacking python3-urllib3 (1.19.1-1+deb9u1) over (1.19.1-1) ... Setting up libjs-jquery (3.1.1-2+deb9u2) ... Setting up libexpat1:amd64 (2.2.0-2+deb9u5) ... Processing triggers for mime-support (3.60) ... Setting up tzdata (2021a-0+deb9u4) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 1 23:01:14 UTC 2023. Universal Time is now: Sat Apr 1 23:01:14 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfreetype6:amd64 (2.6.3-3.2+deb9u2) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Setting up libssl1.1:amd64 (1.1.0l-1~deb9u6) ... Setting up openssl (1.1.0l-1~deb9u6) ... Setting up libsqlite3-0:amd64 (3.16.2-5+deb9u3) ... Setting up python3-urllib3 (1.19.1-1+deb9u1) ... Setting up libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... Setting up ca-certificates (20200601~deb9u2) ... Updating certificates in /etc/ssl/certs... 11 added, 0 removed; done. Setting up libpython2.7-stdlib:amd64 (2.7.13-2+deb9u6) ... Setting up python2.7-minimal (2.7.13-2+deb9u6) ... Setting up libpython3.5-minimal:amd64 (3.5.3-1+deb9u5) ... Setting up python3-pygments (2.2.0+dfsg-1+deb9u2) ... Setting up python3-ipython (5.1.0-3+deb9u1) ... Setting up libpython3.5-stdlib:amd64 (3.5.3-1+deb9u5) ... Setting up python2.7 (2.7.13-2+deb9u6) ... Setting up python3.5-minimal (3.5.3-1+deb9u5) ... Setting up python3.5 (3.5.3-1+deb9u5) ... Setting up ipython3 (5.1.0-3+deb9u1) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... Processing triggers for ca-certificates (20200601~deb9u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-yf', 'dist-upgrade'] 0m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m49.4s DUMP: f0660a0a38f941b755664f52e8306b99 - 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'show', '--no-all-versions', 'python3-skbio'] 0m49.6s DUMP: Package: python3-skbio Source: python-skbio Version: 0.5.1-2 Installed-Size: 3614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libssw0, ipython3, python3 (<< 3.6), python3 (>= 3.5~), python3-cachecontrol, python3-decorator, python3-lockfile, python3-matplotlib, python3-natsort, python3-nose, python3-numpy (>= 1:1.9.2), python3-pandas, python3-scipy, python3:any (>= 3.3.2-2~) Suggests: python-skbio-doc (= 0.5.1-2) Description-en: Python3 data structures, algorithms, educational resources for bioinformatic Scikit-bio is a Python package providing data structures, algorithms, and educational resources for bioinformatics. . This is the package for Python3 Description-md5: 9caa43e0cee032d2bb48b12de52df499 Homepage: https://github.com/biocore/scikit-bio Section: python Priority: optional Filename: pool/main/p/python-skbio/python3-skbio_0.5.1-2_amd64.deb Size: 558664 MD5sum: 757ee37a873ee2f48e6070dc383db50c SHA256: d0c3e5faa46f2c4b26d6d673afdf21c5640d1e1d94cc88e08014537c26607ef2 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'show', '--no-all-versions', 'python3-skbio'] 0m49.6s INFO: apt-cache knows about the following packages: python3-skbio 0m49.6s INFO: Running scripts pre_install 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_database-server'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_database-server'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_exceptions'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_exceptions'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_extras'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_extras'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy'] 0m49.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy'] 0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy', 'python3-skbio'] 0m49.8s DUMP: python3-skbio: Installed: 0.5.1-2 Candidate: 0.5.1-2 Version table: *** 0.5.1-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy', 'python3-skbio'] 0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-y', 'install', 'python3-skbio'] 0m50.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-skbio is already the newest version (0.5.1-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-y', 'install', 'python3-skbio'] 0m50.1s INFO: Running scripts post_install 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_install_exceptions'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_install_exceptions'] 0m50.1s INFO: Running scripts post_distupgrade 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_exceptions'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_exceptions'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_zz_backports'] 0m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_distupgrade_zz_backports'] 0m50.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m50.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m50.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m51.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m51.8s INFO: Running scripts pre_install 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_database-server'] 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_database-server'] 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_exceptions'] 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_exceptions'] 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_extras'] 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_extras'] 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy'] 0m51.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org stretch/updates/main amd64 Packages release v=9,o=Debian,a=oldoldstable,n=stretch,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian stretch/main amd64 Packages release v=9.13,o=Debian,a=oldoldstable,n=stretch,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy'] 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy', 'python3-skbio'] 0m52.0s DUMP: python3-skbio: Installed: 0.5.1-2 Candidate: 0.5.1-2 Version table: *** 0.5.1-2 500 500 http://deb.debian.org/debian stretch/main amd64 Packages 100 /var/lib/dpkg/status 0m52.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-cache', 'policy', 'python3-skbio'] 0m52.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-y', 'install', 'python3-skbio=0.5.1-2'] 0m52.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-skbio is already the newest version (0.5.1-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', '-y', 'install', 'python3-skbio=0.5.1-2'] 0m52.3s INFO: Running scripts post_install 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_install_exceptions'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_install_exceptions'] 0m52.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m53.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 0m54.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', '-ac', '--ignore-obsolete'] 0m55.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', '-ac', '--ignore-obsolete'] 0m55.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.6s DUMP: 0.15.6 0m55.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.6s INFO: Running adequate version 0.15.6 now. 0m55.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'python3-skbio'] 0m55.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'python3-skbio'] 0m55.7s INFO: Running scripts pre_remove 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m56.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_exceptions'] 0m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/pre_remove_exceptions'] 0m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.1s DUMP: install ok installed adduser adduser 3.115 install ok installed apt apt 1.4.11 install ok installed base-files base-files 9.9+deb9u13 install ok installed base-passwd base-passwd 3.5.43 install ok installed bash bash 4.4-5 install ok installed bsdutils bsdutils 1:2.29.2-1+deb9u1 install ok installed ca-certificates ca-certificates 20200601~deb9u2 install ok installed coreutils coreutils 8.26-3 install ok installed dash dash 0.5.8-2.4 install ok installed debconf debconf 1.5.61 install ok installed debian-archive-keyring debian-archive-keyring 2017.5+deb9u2 install ok installed debianutils debianutils 4.8.1.1 install ok installed dh-python dh-python 2.20170125 install ok installed diffutils diffutils 1:3.5-3 install ok installed dpkg dpkg 1.18.26 install ok installed e2fslibs:amd64 e2fslibs 1.43.4-2+deb9u2 install ok installed e2fsprogs e2fsprogs 1.43.4-2+deb9u2 install ok installed findutils findutils 4.6.0+git+20161106-2 install ok installed fonts-lyx fonts-lyx 2.2.2-1 install ok installed gcc-6-base:amd64 gcc-6-base 6.3.0-18+deb9u1 install ok installed gpgv gpgv 2.1.18-8~deb9u4 install ok installed grep grep 2.27-2 install ok installed gzip gzip 1.6-5+deb9u1 install ok installed hostname hostname 3.18+b1 install ok installed init-system-helpers init-system-helpers 1.48 install ok installed ipython3 ipython3 5.1.0-3+deb9u1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.4.11 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.6.7-2 install ok installed libaudit1:amd64 libaudit1 1:2.6.7-2 install ok installed libblas-common libblas-common 3.7.0-2 install ok installed libblas3 libblas3 3.7.0-2 install ok installed libblkid1:amd64 libblkid1 2.29.2-1+deb9u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-8.1 install ok installed libc-bin libc-bin 2.24-11+deb9u4 install ok installed libc6:amd64 libc6 2.24-11+deb9u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.7-3+b1 install ok installed libcomerr2:amd64 libcomerr2 1.43.4-2+deb9u2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28-12+deb9u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.227 install ok installed libexpat1:amd64 libexpat1 2.2.0-2+deb9u5 install ok installed libfdisk1:amd64 libfdisk1 2.29.2-1+deb9u1 install ok installed libffi6:amd64 libffi6 3.2.1-6 install ok installed libfreetype6:amd64 libfreetype6 2.6.3-3.2+deb9u2 install ok installed libgcc1:amd64 libgcc1 1:6.3.0-18+deb9u1 install ok installed libgcrypt20:amd64 libgcrypt20 1.7.6-2+deb9u4 install ok installed libgfortran3:amd64 libgfortran3 6.3.0-18+deb9u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.26-2 install ok installed libjs-jquery libjs-jquery 3.1.1-2+deb9u2 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-4 install ok installed liblapack3 liblapack3 3.7.0-2 install ok installed liblz4-1:amd64 liblz4-1 0.0~r131-2+deb9u1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.2+deb9u1 install ok installed libmount1:amd64 libmount1 2.29.2-1+deb9u1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-1 install ok installed libncursesw5:amd64 libncursesw5 6.0+20161126-1+deb9u2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.6 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.6 install ok installed libpam-runtime libpam-runtime 1.1.8-3.6 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.6 install ok installed libpcre3:amd64 libpcre3 2:8.39-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.28-1+deb9u1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.13-2 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.13-2+deb9u6 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.13-2+deb9u6 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.5.3-1 install ok installed libpython3.5-minimal:amd64 libpython3.5-minimal 3.5.3-1+deb9u5 install ok installed libpython3.5-stdlib:amd64 libpython3.5-stdlib 3.5.3-1+deb9u5 install ok installed libquadmath0:amd64 libquadmath0 6.3.0-18+deb9u1 install ok installed libreadline7:amd64 libreadline7 7.0-3 install ok installed libselinux1:amd64 libselinux1 2.6-3+b3 install ok installed libsemanage-common libsemanage-common 2.6-2 install ok installed libsemanage1:amd64 libsemanage1 2.6-2 install ok installed libsepol1:amd64 libsepol1 2.6-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.29.2-1+deb9u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.16.2-5+deb9u3 install ok installed libss2:amd64 libss2 1.43.4-2+deb9u2 install ok installed libssl1.1:amd64 libssl1.1 1.1.0l-1~deb9u6 install ok installed libssw0:amd64 libssw0 1.1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 6.3.0-18+deb9u1 install ok installed libsystemd0:amd64 libsystemd0 232-25+deb9u14 install ok installed libtinfo5:amd64 libtinfo5 6.0+20161126-1+deb9u2 install ok installed libudev1:amd64 libudev1 232-25+deb9u14 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-6 install ok installed libuuid1:amd64 libuuid1 2.29.2-1+deb9u1 install ok installed login login 1:4.4-4.1+deb9u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.60 install ok installed mount mount 2.29.2-1+deb9u1 install ok installed multiarch-support multiarch-support 2.24-11+deb9u4 install ok installed ncurses-base ncurses-base 6.0+20161126-1+deb9u2 install ok installed ncurses-bin ncurses-bin 6.0+20161126-1+deb9u2 install ok installed openssl openssl 1.1.0l-1~deb9u6 install ok installed passwd passwd 1:4.4-4.1+deb9u1 install ok installed perl-base perl-base 5.24.1-3+deb9u7 install ok installed python python 2.7.13-2 install ok installed python-matplotlib-data python-matplotlib-data 2.0.0+dfsg1-2 install ok installed python-minimal python-minimal 2.7.13-2 install ok installed python-pexpect python-pexpect 4.2.1-1 install ok installed python-ptyprocess python-ptyprocess 0.5.1-1 install ok installed python2.7 python2.7 2.7.13-2+deb9u6 install ok installed python2.7-minimal python2.7-minimal 2.7.13-2+deb9u6 install ok installed python3 python3 3.5.3-1 install ok installed python3-cachecontrol python3-cachecontrol 0.11.7-1 install ok installed python3-chardet python3-chardet 2.3.0-2 install ok installed python3-cycler python3-cycler 0.10.0-1 install ok installed python3-dateutil python3-dateutil 2.5.3-2 install ok installed python3-decorator python3-decorator 4.0.11-1 install ok installed python3-ipython python3-ipython 5.1.0-3+deb9u1 install ok installed python3-ipython-genutils python3-ipython-genutils 0.1.0-2 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2 install ok installed python3-matplotlib python3-matplotlib 2.0.0+dfsg1-2 install ok installed python3-minimal python3-minimal 3.5.3-1 install ok installed python3-natsort python3-natsort 4.0.3-2 install ok installed python3-nose python3-nose 1.3.7-2 install ok installed python3-numpy python3-numpy 1:1.12.1-3 install ok installed python3-pandas python3-pandas 0.19.2-5.1 install ok installed python3-pandas-lib python3-pandas-lib 0.19.2-5.1 install ok installed python3-pexpect python3-pexpect 4.2.1-1 install ok installed python3-pickleshare python3-pickleshare 0.7.4-1 install ok installed python3-pkg-resources python3-pkg-resources 33.1.1-1 install ok installed python3-prompt-toolkit python3-prompt-toolkit 1.0.9-1 install ok installed python3-ptyprocess python3-ptyprocess 0.5.1-1 install ok installed python3-pygments python3-pygments 2.2.0+dfsg-1+deb9u2 install ok installed python3-pyparsing python3-pyparsing 2.1.10+dfsg1-1 install ok installed python3-requests python3-requests 2.12.4-1 install ok installed python3-scipy python3-scipy 0.18.1-2 install ok installed python3-simplegeneric python3-simplegeneric 0.8.1-1 install ok installed python3-six python3-six 1.10.0-3 install ok installed python3-skbio python3-skbio 0.5.1-2 install ok installed python3-traitlets python3-traitlets 4.3.1-1 install ok installed python3-tz python3-tz 2016.7-0.3 install ok installed python3-urllib3 python3-urllib3 1.19.1-1+deb9u1 install ok installed python3-wcwidth python3-wcwidth 0.1.7+dfsg1-1 install ok installed python3.5 python3.5 3.5.3-1+deb9u5 install ok installed python3.5-minimal python3.5-minimal 3.5.3-1+deb9u5 install ok installed readline-common readline-common 7.0-3 install ok installed sed sed 4.4-1 install ok installed sensible-utils sensible-utils 0.0.9+deb9u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.9 install ok installed tar tar 1.29b-1.1+deb9u1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed tzdata tzdata 2021a-0+deb9u4 install ok installed util-linux util-linux 2.29.2-1+deb9u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.8.dfsg-5+deb9u1 0m57.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'remove', 'ca-certificates', 'dh-python', 'fonts-lyx', 'ipython3', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'mime-support', 'openssl', 'python', 'python-matplotlib-data', 'python-minimal', 'python-pexpect', 'python-ptyprocess', 'python2.7', 'python2.7-minimal', 'python3', 'python3-cachecontrol', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-ipython', 'python3-ipython-genutils', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-natsort', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pexpect', 'python3-pickleshare', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-simplegeneric', 'python3-six', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wcwidth', 'python3.5', 'python3.5-minimal', 'readline-common', 'ttf-bitstream-vera', 'tzdata', 'python3-skbio'] 1m1.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates dh-python fonts-lyx ipython3 libblas-common libblas3 libexpat1 libffi6 libfreetype6 libgfortran3 libjs-jquery libjs-jquery-ui liblapack3 libmpdec2 libpng16-16 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libssw0 mime-support openssl python python-matplotlib-data python-minimal python-pexpect python-ptyprocess python2.7 python2.7-minimal python3 python3-cachecontrol python3-chardet python3-cycler python3-dateutil python3-decorator python3-ipython python3-ipython-genutils python3-lockfile python3-matplotlib python3-minimal python3-natsort python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pexpect python3-pickleshare python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-simplegeneric python3-six python3-skbio python3-traitlets python3-tz python3-urllib3 python3-wcwidth python3.5 python3.5-minimal readline-common ttf-bitstream-vera tzdata 0 upgraded, 0 newly installed, 72 to remove and 0 not upgraded. After this operation, 180 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13156 files and directories currently installed.) Removing python3-skbio (0.5.1-2) ... Removing python3-cachecontrol (0.11.7-1) ... Removing python3-requests (2.12.4-1) ... Removing ca-certificates (20200601~deb9u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing ipython3 (5.1.0-3+deb9u1) ... Removing python3-ipython (5.1.0-3+deb9u1) ... Removing python3-simplegeneric (0.8.1-1) ... Removing python3-urllib3 (1.19.1-1+deb9u1) ... Removing python3-scipy (0.18.1-2) ... Removing python3-pygments (2.2.0+dfsg-1+deb9u2) ... Removing python3-matplotlib (2.0.0+dfsg1-2) ... Removing python-matplotlib-data (2.0.0+dfsg1-2) ... Removing fonts-lyx (2.2.2-1) ... Removing python3-pandas (0.19.2-5.1) ... Removing python3-pandas-lib (0.19.2-5.1) ... Removing python3-numpy (1:1.12.1-3) ... Removing liblapack3 (3.7.0-2) ... Removing libblas3 (3.7.0-2) ... Removing libblas-common (3.7.0-2) ... Removing python-pexpect (4.2.1-1) ... Removing python-ptyprocess (0.5.1-1) ... Removing python (2.7.13-2) ... Removing python2.7 (2.7.13-2+deb9u6) ... Removing libfreetype6:amd64 (2.6.3-3.2+deb9u2) ... Removing libgfortran3:amd64 (6.3.0-18+deb9u1) ... Removing libjs-jquery-ui (1.12.1+dfsg-4) ... Removing libjs-jquery (3.1.1-2+deb9u2) ... Removing libpng16-16:amd64 (1.6.28-1+deb9u1) ... Removing libpython-stdlib:amd64 (2.7.13-2) ... Removing python-minimal (2.7.13-2) ... Removing python2.7-minimal (2.7.13-2+deb9u6) ... Removing libquadmath0:amd64 (6.3.0-18+deb9u1) ... Removing openssl (1.1.0l-1~deb9u6) ... Removing libssw0:amd64 (1.1-1+b1) ... Removing python3-chardet (2.3.0-2) ... Removing python3-cycler (0.10.0-1) ... Removing python3-dateutil (2.5.3-2) ... Removing python3-traitlets (4.3.1-1) ... Removing python3-decorator (4.0.11-1) ... Removing python3-ipython-genutils (0.1.0-2) ... Removing python3-lockfile (1:0.12.2-2) ... Removing python3-natsort (4.0.3-2) ... Removing python3-nose (1.3.7-2) ... Removing python3-pexpect (4.2.1-1) ... Removing python3-pickleshare (0.7.4-1) ... Removing python3-pkg-resources (33.1.1-1) ... Removing python3-prompt-toolkit (1.0.9-1) ... Removing python3-ptyprocess (0.5.1-1) ... Removing python3-pyparsing (2.1.10+dfsg1-1) ... Removing python3-six (1.10.0-3) ... Removing python3-tz (2016.7-0.3) ... Removing python3-wcwidth (0.1.7+dfsg1-1) ... Removing ttf-bitstream-vera (1.10-8) ... Removing tzdata (2021a-0+deb9u4) ... Removing libpython2.7-stdlib:amd64 (2.7.13-2+deb9u6) ... Removing libffi6:amd64 (3.2.1-6) ... Removing libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... Removing dh-python (2.20170125) ... Removing python3 (3.5.3-1) ... Removing python3.5 (3.5.3-1+deb9u5) ... Removing python3-minimal (3.5.3-1) ... Removing python3.5-minimal (3.5.3-1+deb9u5) ... Removing libexpat1:amd64 (2.2.0-2+deb9u5) ... Removing libpython3-stdlib:amd64 (3.5.3-1) ... Removing libpython3.5-stdlib:amd64 (3.5.3-1+deb9u5) ... Removing libmpdec2:amd64 (2.4.2-1) ... Removing libpython3.5-minimal:amd64 (3.5.3-1+deb9u5) ... Removing libreadline7:amd64 (7.0-3) ... Removing libsqlite3-0:amd64 (3.16.2-5+deb9u3) ... Removing libssl1.1:amd64 (1.1.0l-1~deb9u6) ... Removing mime-support (3.60) ... Removing readline-common (7.0-3) ... Processing triggers for libc-bin (2.24-11+deb9u4) ... 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'remove', 'ca-certificates', 'dh-python', 'fonts-lyx', 'ipython3', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'mime-support', 'openssl', 'python', 'python-matplotlib-data', 'python-minimal', 'python-pexpect', 'python-ptyprocess', 'python2.7', 'python2.7-minimal', 'python3', 'python3-cachecontrol', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-ipython', 'python3-ipython-genutils', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-natsort', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pexpect', 'python3-pickleshare', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-simplegeneric', 'python3-six', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wcwidth', 'python3.5', 'python3.5-minimal', 'readline-common', 'ttf-bitstream-vera', 'tzdata', 'python3-skbio'] 1m1.6s INFO: Running scripts post_remove 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_remove_exceptions'] 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_remove_exceptions'] 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--purge', 'ca-certificates', 'dh-python', 'fonts-lyx', 'ipython3', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'mime-support', 'openssl', 'python', 'python-matplotlib-data', 'python-minimal', 'python-pexpect', 'python-ptyprocess', 'python2.7', 'python2.7-minimal', 'python3', 'python3-cachecontrol', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-ipython', 'python3-ipython-genutils', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-natsort', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pexpect', 'python3-pickleshare', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-simplegeneric', 'python3-six', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wcwidth', 'python3.5', 'python3.5-minimal', 'readline-common', 'ttf-bitstream-vera', 'tzdata'] 1m2.0s DUMP: (Reading database ... 4421 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb9u2) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove dh-python which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove ipython3 which isn't installed dpkg: warning: ignoring request to remove libblas-common which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi6 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgfortran3 which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-4) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.13-2+deb9u6) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.5-minimal:amd64 (3.5.3-1+deb9u5) ... dpkg: warning: ignoring request to remove libpython3.5-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.0l-1~deb9u6) ... dpkg: warning: ignoring request to remove libssw0 which isn't installed Purging configuration files for mime-support (3.60) ... Purging configuration files for openssl (1.1.0l-1~deb9u6) ... Purging configuration files for python (2.7.13-2) ... Purging configuration files for python-matplotlib-data (2.0.0+dfsg1-2) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-pexpect which isn't installed dpkg: warning: ignoring request to remove python-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.13-2+deb9u6) ... Purging configuration files for python3 (3.5.3-1) ... dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-ipython which isn't installed dpkg: warning: ignoring request to remove python3-ipython-genutils which isn't installed dpkg: warning: ignoring request to remove python3-lockfile which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-natsort which isn't installed dpkg: warning: ignoring request to remove python3-nose which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pexpect which isn't installed dpkg: warning: ignoring request to remove python3-pickleshare which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python3-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-simplegeneric which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3.5 which isn't installed Purging configuration files for python3.5-minimal (3.5.3-1+deb9u5) ... Purging configuration files for readline-common (7.0-3) ... dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for tzdata (2021a-0+deb9u4) ... 1m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--purge', 'ca-certificates', 'dh-python', 'fonts-lyx', 'ipython3', 'libblas-common', 'libblas3', 'libexpat1:amd64', 'libffi6:amd64', 'libfreetype6:amd64', 'libgfortran3:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.5-minimal:amd64', 'libpython3.5-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'mime-support', 'openssl', 'python', 'python-matplotlib-data', 'python-minimal', 'python-pexpect', 'python-ptyprocess', 'python2.7', 'python2.7-minimal', 'python3', 'python3-cachecontrol', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-ipython', 'python3-ipython-genutils', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-natsort', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pexpect', 'python3-pickleshare', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-simplegeneric', 'python3-six', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wcwidth', 'python3.5', 'python3.5-minimal', 'readline-common', 'ttf-bitstream-vera', 'tzdata'] 1m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--purge', 'python3-skbio'] 1m2.0s DUMP: dpkg: warning: ignoring request to remove python3-skbio which isn't installed 1m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--purge', 'python3-skbio'] 1m2.0s INFO: Running scripts post_purge 1m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_purge_exceptions'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_purge_exceptions'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--purge', '--pending'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--purge', '--pending'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--remove', '--pending'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg', '--remove', '--pending'] 1m2.1s INFO: Running scripts post_test 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_test_exceptions'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'tmp/scripts/post_test_exceptions'] 1m2.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 1m2.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 1m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg-divert', '--list'] 1m2.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'dpkg-divert', '--list'] 1m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'clean'] 1m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0', 'apt-get', 'clean'] 1m2.4s DEBUG: Recording chroot state 1m3.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/shm'] 1m3.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/shm'] 1m3.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/console'] 1m3.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/console'] 1m3.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/ptmx'] 1m3.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/ptmx'] 1m3.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/pts'] 1m3.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/dev/pts'] 1m3.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/proc'] 1m3.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0/proc'] 1m3.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 1m3.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvj0u75h0'] 1m3.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvj0u75h0 1m3.3s INFO: PASS: Upgrading between Debian distributions. 1m3.3s INFO: PASS: All tests. 1m3.3s INFO: piuparts run ends. ret=0 End: 2023-04-01 23:01:38 GMT