Start: 2022-04-12 00:10:27 GMT [testing] Package: alien-hunter Version: 1.7-8 Installed-Size: 112 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbytecode-java, libbiojava-java, libcommons-cli-java, libcommons-collections3-java, libcommons-dbcp-java, libcommons-pool-java Suggests: bioperl Description: Interpolated Variable Order Motifs to identify horizontally acquired DNA Homepage: https://www.sanger.ac.uk/science/tools/alien-hunter Description-md5: 5f7c91ddef3ac915fd4f61d66745892f Tag: field::biology, field::biology:structural, implemented-in::java, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing Section: science Priority: optional Filename: pool/main/a/alien-hunter/alien-hunter_1.7-8_all.deb Size: 28272 MD5sum: bae42e5494f6324b26093ef63f4aabba SHA256: 4f4319217ffee930ecd4e0d8dae23bc0a1b91753e6f8783fa67a21170f06eaff [sid] Package: alien-hunter Version: 1.7-10 Installed-Size: 113 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbytecode-java, libbiojava-java (>= 1:1.9.5+dfsg), libcommons-cli-java, libcommons-collections3-java, libcommons-dbcp-java, libcommons-pool-java Suggests: bioperl Description: Interpolated Variable Order Motifs to identify horizontally acquired DNA Homepage: https://www.sanger.ac.uk/science/tools/alien-hunter Description-md5: 5f7c91ddef3ac915fd4f61d66745892f Tag: field::biology, field::biology:structural, implemented-in::java, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing Section: science Priority: optional Filename: pool/main/a/alien-hunter/alien-hunter_1.7-10_all.deb Size: 28464 MD5sum: 2829f0a83c70e67177556194b7c49082 SHA256: 61a34a7960bf7e3809df2fcd69ef73762a6f5f1de659b09f1d10bad8dd35feb6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt alien-hunter=1.7-10 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt alien-hunter=1.7-10 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-20-amd64 #1 SMP Debian 4.19.235-1 (2022-03-17) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpy983k_gx 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpy983k_gx 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpy983k_gx/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'update'] 0m5.0s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [130 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8420 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5733 kB] Fetched 14.3 MB in 2s (5840 kB/s) Reading package lists... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'update'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-yf', 'dist-upgrade'] 0m6.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: perl-base 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1640 kB of archives. After this operation, 28.7 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.34.0-4 [1640 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1640 kB in 0s (33.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6687 files and directories currently installed.) Preparing to unpack .../perl-base_5.34.0-4_amd64.deb ... Unpacking perl-base (5.34.0-4) over (5.34.0-3) ... Setting up perl-base (5.34.0-4) ... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-yf', 'dist-upgrade'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s DUMP: 6f31250447e697b7ae58a933ad72ae90 - 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s INFO: Running scripts post_setup 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DUMP: install ok installed adduser adduser 3.121 install ok installed apt apt 2.4.4 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.7 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-2 install ok installed gcc-12-base:amd64 gcc-12-base 12-20220319-1 install ok installed gpgv gpgv 2.2.27-3+b1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.4.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12-20220319-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.19.2-2+b1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.19.2-2+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.19.2-2+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.19.2-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b2 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b2 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-1 install ok installed libstdc++6:amd64 libstdc++6 12-20220319-1 install ok installed libsystemd0:amd64 libsystemd0 250.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.10+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-4 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'show', '--no-all-versions', 'alien-hunter'] 0m8.2s DUMP: Package: alien-hunter Version: 1.7-8 Installed-Size: 112 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbytecode-java, libbiojava-java, libcommons-cli-java, libcommons-collections3-java, libcommons-dbcp-java, libcommons-pool-java Suggests: bioperl Description-en: Interpolated Variable Order Motifs to identify horizontally acquired DNA Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/. Description-md5: 5f7c91ddef3ac915fd4f61d66745892f Homepage: https://www.sanger.ac.uk/science/tools/alien-hunter Tag: field::biology, field::biology:structural, implemented-in::java, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing Section: science Priority: optional Filename: pool/main/a/alien-hunter/alien-hunter_1.7-8_all.deb Size: 28272 MD5sum: bae42e5494f6324b26093ef63f4aabba SHA256: 4f4319217ffee930ecd4e0d8dae23bc0a1b91753e6f8783fa67a21170f06eaff 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'show', '--no-all-versions', 'alien-hunter'] 0m8.2s INFO: apt-cache knows about the following packages: alien-hunter 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy'] 0m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy', 'alien-hunter'] 0m8.3s DUMP: alien-hunter: Installed: (none) Candidate: 1.7-8 Version table: 1.7-8 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy', 'alien-hunter'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-y', 'install', 'alien-hunter'] 0m25.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libbrotli1 libbsd0 libbytecode-java libcommons-cli-java libcommons-collections3-java libcommons-dbcp-java libcommons-pool-java libcups2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libharfbuzz0b libhsqldb-java libicu67 libjpeg62-turbo liblcms2-2 libllvm13 libmd0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 openjdk-11-jre openjdk-11-jre-headless openssl sensible-utils ucf x11-common Suggested packages: bioperl libasound2-plugins alsa-utils java-virtual-machine libjgrapht-java libbiojava-java-doc libcommons-collections3-java-doc libcommons-dbcp-java-doc libgeronimo-jta-1.2-spec-java cups-common libhsqldb-java-doc liblcms2-utils pciutils pcscd lm-sensors libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic Recommended packages: alsa-ucm-conf alsa-topology-conf dbus libglib2.0-data shared-mime-info xdg-user-dirs mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra The following NEW packages will be installed: alien-hunter ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.7-java libbrotli1 libbsd0 libbytecode-java libcommons-cli-java libcommons-collections3-java libcommons-dbcp-java libcommons-pool-java libcups2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libharfbuzz0b libhsqldb-java libicu67 libjpeg62-turbo liblcms2-2 libllvm13 libmd0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 openjdk-11-jre openjdk-11-jre-headless openssl sensible-utils ucf x11-common 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 106 MB of archives. After this operation, 419 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 1.1.1n-1 [853 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20211016 [156 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.33-1 [113 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.38.2-1 [829 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.77-1 [1327 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20190909 [15.7 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.72 [14.5 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.0-1 [235 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.1op1-2 [349 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.11.1+dfsg-1 [400 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config all 2.13.1-4.4 [281 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.4 [350 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.6.1-2 [38.8 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.6.1-2+b1 [374 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.72.0-1+b1 [1426 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.5-3 [60.1 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 openjdk-11-jre-headless amd64 11.0.14.1+1-1 [37.3 MB] Get:31 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.4.0-1 [51.0 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.6-1 [114 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.7.5-1 [308 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.7.5-1 [774 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.110-1 [15.4 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.110-1 [44.7 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 21.3.7-1 [74.8 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.7.5-1 [203 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-1 [22.4 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:54 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.110-1 [29.3 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.16-3 [53.7 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.110-1 [72.6 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.110-1 [27.5 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.110-1 [30.9 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.13+dfsg-1 [709 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libllvm13 amd64 1:13.0.1-3+b2 [20.1 MB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libvulkan1 amd64 1.3.204.1-2 [113 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 21.3.7-1 [10.8 MB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 21.3.7-1 [184 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.4.0-1 [33.7 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.4.0-1 [90.9 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1 [84.0 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 openjdk-11-jre amd64 11.0.14.1+1-1 [175 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:80 http://deb.debian.org/debian bookworm/main amd64 libbytecode-java all 0.92.svn.20090106-2.1 [88.9 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libcommons-pool-java all 1.6-4 [109 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libcommons-collections3-java all 3.2.2-2 [526 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libcommons-dbcp-java all 1.4-7 [157 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libhsqldb-java all 2.6.1-1 [1619 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libbiojava1.7-java all 1:1.7.1-9 [3274 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libbiojava-java all 1:1.7.1-9 [48.7 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 alien-hunter all 1.7-8 [28.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 106 MB in 1s (126 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6689 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_1.1.1n-1_amd64.deb ... Unpacking openssl (1.1.1n-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package ucf. Preparing to unpack .../03-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../04-libnspr4_2%3a4.33-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.33-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.38.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.38.2-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../06-libnss3_2%3a3.77-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.77-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../07-ca-certificates-java_20190909_all.deb ... Unpacking ca-certificates-java (20190909) ... Selecting previously unselected package java-common. Preparing to unpack .../08-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../09-libavahi-common-data_0.8-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../10-libavahi-common3_0.8-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../11-libdbus-1-3_1.14.0-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.0-1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../12-libavahi-client3_0.8-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-5) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../13-libcups2_2.4.1op1-2_amd64.deb ... Unpacking libcups2:amd64 (2.4.1op1-2) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../14-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../15-libjpeg62-turbo_1%3a2.1.2-1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../16-libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../17-libbrotli1_1.0.9-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b3) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../18-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../19-libfreetype6_2.11.1+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.11.1+dfsg-1) ... Selecting previously unselected package fonts-dejavu-core. 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Preparing to unpack .../84-libhsqldb-java_2.6.1-1_all.deb ... Unpacking libhsqldb-java (2.6.1-1) ... Selecting previously unselected package libbiojava1.7-java. Preparing to unpack .../85-libbiojava1.7-java_1%3a1.7.1-9_all.deb ... Unpacking libbiojava1.7-java (1:1.7.1-9) ... Selecting previously unselected package libbiojava-java. Preparing to unpack .../86-libbiojava-java_1%3a1.7.1-9_all.deb ... Unpacking libbiojava-java (1:1.7.1-9) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../87-libcommons-cli-java_1.4-2_all.deb ... Unpacking libcommons-cli-java (1.4-2) ... Selecting previously unselected package alien-hunter. Preparing to unpack .../88-alien-hunter_1.7-8_all.deb ... Unpacking alien-hunter (1.7-8) ... Setting up libexpat1:amd64 (2.4.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libpciaccess0:amd64 (0.16-3) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up java-common (0.72) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libcommons-cli-java (1.4-2) ... Setting up libglib2.0-0:amd64 (2.72.0-1+b1) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.4.0-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b3) ... Setting up libsqlite3-0:amd64 (3.38.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-7) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.2.6.1-2) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up libx11-data (2:1.7.5-1) ... Setting up libnspr4:amd64 (2:4.33-1) ... Setting up libavahi-common-data:amd64 (0.8-5) ... Setting up libdbus-1-3:amd64 (1.14.0-1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libcommons-pool-java (1.6-4) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:amd64 (1.9.5-3) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libglapi-mesa:amd64 (21.3.7-1) ... Setting up libvulkan1:amd64 (1.3.204.1-2) ... Setting up libgif7:amd64 (5.1.9-2) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up sensible-utils (0.0.17) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libasound2:amd64 (1.2.6.1-2+b1) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up openssl (1.1.1n-1) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up libdrm-common (2.4.110-1) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libxml2:amd64 (2.9.13+dfsg-1) ... Setting up libcommons-dbcp-java (1.4-7) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libhsqldb-java (2.6.1-1) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libavahi-common3:amd64 (0.8-5) ... Setting up libnss3:amd64 (2:3.77-1) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libfreetype6:amd64 (2.11.1+dfsg-1) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libllvm13:amd64 (1:13.0.1-3+b2) ... Setting up ucf (3.0043) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up libdrm2:amd64 (2.4.110-1) ... Setting up libx11-6:amd64 (2:1.7.5-1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libavahi-client3:amd64 (0.8-5) ... Setting up libdrm-amdgpu1:amd64 (2.4.110-1) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libx11-xcb1:amd64 (2:1.7.5-1) ... Setting up libdrm-nouveau2:amd64 (2.4.110-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libdrm-radeon1:amd64 (2.4.110-1) ... Setting up fontconfig-config (2.13.1-4.4) ... Setting up libdrm-intel1:amd64 (2.4.110-1) ... Setting up libgl1-mesa-dri:amd64 (21.3.7-1) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxfixes3:amd64 (1:6.0.0-1) ... Setting up libcups2:amd64 (2.4.1op1-2) ... Setting up libfontconfig1:amd64 (2.13.1-4.4) ... Setting up libglx-mesa0:amd64 (21.3.7-1) ... Setting up libxi6:amd64 (2:1.8-1) ... Setting up libglx0:amd64 (1.4.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libgl1:amd64 (1.4.0-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.14.1+1-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.14.1+1-1) ... Setting up default-jre (2:1.11-72) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up libbytecode-java (0.92.svn.20090106-2.1) ... Setting up libbiojava1.7-java (1:1.7.1-9) ... Setting up libbiojava-java (1:1.7.1-9) ... Setting up alien-hunter (1.7-8) ... Processing triggers for libc-bin (2.33-7) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-y', 'install', 'alien-hunter'] 0m25.9s INFO: Running scripts post_install 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_install_exceptions'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_install_exceptions'] 0m25.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m26.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m26.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpy983k_gx to sid 0m26.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m26.3s INFO: Running scripts pre_distupgrade 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_exceptions'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_exceptions'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'update'] 0m30.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9138 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6778 kB] Fetched 16.1 MB in 3s (5523 kB/s) Reading package lists... 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'update'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-yf', 'dist-upgrade'] 0m34.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhsqldb-java libservlet-api-java Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libbiojava1.7-java The following NEW packages will be installed: libatinject-jsr330-api-java libbiojava1.9-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java The following packages will be upgraded: alien-hunter apt gzip libapt-pkg6.0 libbiojava-java libcap-ng0 libgcrypt20 libgl1-mesa-dri libglapi-mesa libglx-mesa0 liblzma5 libpcre2-8-0 libpcre3 libzstd1 14 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After this operation, 3242 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1 [140 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.1-2 [704 kB] Get:3 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.5-2.1 [168 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [275 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.4.5 [1029 kB] Get:6 http://deb.debian.org/debian sid/main amd64 apt amd64 2.4.5 [1496 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:8 http://deb.debian.org/debian sid/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libguava-java all 29.0-6 [2419 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libjgraph-java all 5.12.4.2+dfsg-5.1 [205 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libjgrapht0.8-java all 0.8.3-5 [214 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libbiojava-java all 1:1.9.5+dfsg-2 [7148 B] Get:13 http://deb.debian.org/debian sid/main amd64 libbiojava1.9-java all 1:1.9.5+dfsg-2 [3117 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.7.9-2.2+b2 [14.7 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.39-4 [252 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-14 [345 kB] Get:17 http://deb.debian.org/debian sid/main amd64 alien-hunter all 1.7-10 [28.5 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 21.3.8-1 [184 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 21.3.8-1 [10.8 MB] Get:20 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 21.3.8-1 [74.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.6 MB in 0s (111 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8710 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.12-1_amd64.deb ... Unpacking gzip (1.12-1) over (1.10-4) ... Setting up gzip (1.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8710 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.1-2) over (1.9.4-5) ... Setting up libgcrypt20:amd64 (1.10.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8710 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.5-2.1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.5-2.1) over (5.2.5-2) ... Setting up liblzma5:amd64 (5.2.5-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8710 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.2+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.2+dfsg-1) over (1.4.10+dfsg-1) ... Setting up libzstd1:amd64 (1.5.2+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8710 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.4.5_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.4.5) over (2.4.4) ... Setting up libapt-pkg6.0:amd64 (2.4.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8710 files and directories currently installed.) Preparing to unpack .../archives/apt_2.4.5_amd64.deb ... Unpacking apt (2.4.5) over (2.4.4) ... Setting up apt (2.4.5) ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... Selecting previously unselected package libatinject-jsr330-api-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8709 files and directories currently installed.) Preparing to unpack .../libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../libguava-java_29.0-6_all.deb ... Unpacking libguava-java (29.0-6) ... Selecting previously unselected package libjgraph-java. Preparing to unpack .../libjgraph-java_5.12.4.2+dfsg-5.1_all.deb ... Unpacking libjgraph-java (5.12.4.2+dfsg-5.1) ... Selecting previously unselected package libjgrapht0.8-java. Preparing to unpack .../libjgrapht0.8-java_0.8.3-5_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-5) ... dpkg: libbiojava1.7-java: dependency problems, but removing anyway as you requested: libbiojava-java depends on libbiojava1.7-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8805 files and directories currently installed.) Removing libbiojava1.7-java (1:1.7.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8799 files and directories currently installed.) Preparing to unpack .../libbiojava-java_1%3a1.9.5+dfsg-2_all.deb ... Unpacking libbiojava-java (1:1.9.5+dfsg-2) over (1:1.7.1-9) ... Selecting previously unselected package libbiojava1.9-java. Preparing to unpack .../libbiojava1.9-java_1%3a1.9.5+dfsg-2_all.deb ... Unpacking libbiojava1.9-java (1:1.9.5+dfsg-2) ... Preparing to unpack .../libcap-ng0_0.7.9-2.2+b2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2.2+b2) over (0.7.9-2.2+b1) ... Setting up libcap-ng0:amd64 (0.7.9-2.2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8824 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.39-4_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.39-4) over (10.39-3) ... Setting up libpcre2-8-0:amd64 (10.39-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8824 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-14_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-14) over (2:8.39-13) ... Setting up libpcre3:amd64 (2:8.39-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8824 files and directories currently installed.) Preparing to unpack .../alien-hunter_1.7-10_all.deb ... Unpacking alien-hunter (1.7-10) over (1.7-8) ... Preparing to unpack .../libglx-mesa0_21.3.8-1_amd64.deb ... Unpacking libglx-mesa0:amd64 (21.3.8-1) over (21.3.7-1) ... Preparing to unpack .../libgl1-mesa-dri_21.3.8-1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (21.3.8-1) over (21.3.7-1) ... Preparing to unpack .../libglapi-mesa_21.3.8-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (21.3.8-1) over (21.3.7-1) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libjgraph-java (5.12.4.2+dfsg-5.1) ... Setting up libglapi-mesa:amd64 (21.3.8-1) ... Setting up libjgrapht0.8-java (0.8.3-5) ... Setting up libgl1-mesa-dri:amd64 (21.3.8-1) ... Setting up libguava-java (29.0-6) ... Setting up libbiojava1.9-java (1:1.9.5+dfsg-2) ... Setting up libbiojava-java (1:1.9.5+dfsg-2) ... Setting up libglx-mesa0:amd64 (21.3.8-1) ... Setting up alien-hunter (1.7-10) ... Processing triggers for libc-bin (2.33-7) ... 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-yf', 'dist-upgrade'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.2s DUMP: 6dbbeee056b67584590d804ac89feca2 - 0m35.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'show', '--no-all-versions', 'alien-hunter'] 0m35.5s DUMP: Package: alien-hunter Version: 1.7-10 Installed-Size: 113 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbytecode-java, libbiojava-java (>= 1:1.9.5+dfsg), libcommons-cli-java, libcommons-collections3-java, libcommons-dbcp-java, libcommons-pool-java Suggests: bioperl Description-en: Interpolated Variable Order Motifs to identify horizontally acquired DNA Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/. Description-md5: 5f7c91ddef3ac915fd4f61d66745892f Homepage: https://www.sanger.ac.uk/science/tools/alien-hunter Tag: field::biology, field::biology:structural, implemented-in::java, implemented-in::perl, interface::commandline, role::program, scope::utility, use::analysing Section: science Priority: optional Filename: pool/main/a/alien-hunter/alien-hunter_1.7-10_all.deb Size: 28464 MD5sum: 2829f0a83c70e67177556194b7c49082 SHA256: 61a34a7960bf7e3809df2fcd69ef73762a6f5f1de659b09f1d10bad8dd35feb6 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'show', '--no-all-versions', 'alien-hunter'] 0m35.5s INFO: apt-cache knows about the following packages: alien-hunter 0m35.5s INFO: Running scripts pre_install 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_database-server'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_database-server'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_extras'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_extras'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy'] 0m35.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy', 'alien-hunter'] 0m35.6s DUMP: alien-hunter: Installed: 1.7-10 Candidate: 1.7-10 Version table: *** 1.7-10 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy', 'alien-hunter'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-y', 'install', 'alien-hunter'] 0m35.9s DUMP: Reading package lists... Building dependency tree... Reading state information... alien-hunter is already the newest version (1.7-10). The following packages were automatically installed and are no longer required: libhsqldb-java libservlet-api-java Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-y', 'install', 'alien-hunter'] 0m35.9s INFO: Running scripts post_install 0m35.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_install_exceptions'] 0m35.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_install_exceptions'] 0m35.9s INFO: Running scripts post_distupgrade 0m35.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m36.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m36.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m36.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m36.6s INFO: Running scripts pre_install 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_database-server'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_database-server'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_exceptions'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_exceptions'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_extras'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_extras'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy'] 0m36.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy', 'alien-hunter'] 0m36.8s DUMP: alien-hunter: Installed: 1.7-10 Candidate: 1.7-10 Version table: *** 1.7-10 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-cache', 'policy', 'alien-hunter'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-y', 'install', 'alien-hunter=1.7-10'] 0m37.2s DUMP: Reading package lists... Building dependency tree... Reading state information... alien-hunter is already the newest version (1.7-10). The following packages were automatically installed and are no longer required: libhsqldb-java libservlet-api-java Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', '-y', 'install', 'alien-hunter=1.7-10'] 0m37.2s INFO: Running scripts post_install 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_install_exceptions'] 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_install_exceptions'] 0m37.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m37.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m37.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', '-ac', '--ignore-obsolete'] 0m40.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', '-ac', '--ignore-obsolete'] 0m40.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m40.5s DUMP: 0.15.2 0m40.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m40.5s INFO: Running adequate version 0.15.2 now. 0m40.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'alien-hunter'] 0m40.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'alien-hunter'] 0m40.5s INFO: Running scripts pre_remove 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_exceptions'] 0m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/pre_remove_exceptions'] 0m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m42.3s DUMP: install ok installed adduser adduser 3.121 install ok installed alien-hunter alien-hunter 1.7-10 install ok installed apt apt 2.4.5 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed ca-certificates ca-certificates 20211016 install ok installed ca-certificates-java ca-certificates-java 20190909 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.1 install ok installed default-jre default-jre 2:1.11-72 install ok installed default-jre-headless default-jre-headless 2:1.11-72 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.7 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed gcc-12-base:amd64 gcc-12-base 12-20220319-1 install ok installed gpgv gpgv 2.2.27-3+b1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed java-common java-common 0.72 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.4.5 install ok installed libasound2:amd64 libasound2 1.2.6.1-2+b1 install ok installed libasound2-data libasound2-data 1.2.6.1-2 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-5 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-5 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-5 install ok installed libbiojava-java libbiojava-java 1:1.9.5+dfsg-2 install ok installed libbiojava1.9-java libbiojava1.9-java 1:1.9.5+dfsg-2 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.6-1 install ok installed libbytecode-java libbytecode-java 0.92.svn.20090106-2.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-7 install ok installed libc6:amd64 libc6 2.33-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b2 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcommons-cli-java libcommons-cli-java 1.4-2 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-2 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-7 install ok installed libcommons-pool-java libcommons-pool-java 1.6-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libcups2:amd64 libcups2 2.4.1op1-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.0-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.110-1 install ok installed libdrm-common libdrm-common 2.4.110-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.110-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.110-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.110-1 install ok installed libdrm2:amd64 libdrm2 2.4.110-1 install ok installed libedit2:amd64 libedit2 3.1-20210910-1 install ok installed libelf1:amd64 libelf1 0.186-1 install ok installed libexpat1:amd64 libexpat1 2.4.8-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.4 install ok installed libfreetype6:amd64 libfreetype6 2.11.1+dfsg-1 install ok installed libgcc-s1:amd64 libgcc-s1 12-20220319-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgif7:amd64 libgif7 5.1.9-2 install ok installed libgl1:amd64 libgl1 1.4.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 21.3.8-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 21.3.8-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.72.0-1+b1 install ok installed libglvnd0:amd64 libglvnd0 1.4.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 21.3.8-1 install ok installed libglx0:amd64 libglx0 1.4.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.19.2-2+b1 install ok installed libguava-java libguava-java 29.0-6 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhsqldb-java libhsqldb-java 2.6.1-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libjgraph-java libjgraph-java 5.12.4.2+dfsg-5.1 install ok installed libjgrapht0.8-java libjgrapht0.8-java 0.8.3-5 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.19.2-2+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.19.2-2+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.19.2-2+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libllvm13:amd64 libllvm13 1:13.0.1-3+b2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmd0:amd64 libmd0 1.0.4-1 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.33-1 install ok installed libnss3:amd64 libnss3 2:3.77-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-4 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.5-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b2 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-7 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libservlet-api-java libservlet-api-java 4.0.1-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.38.2-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-1 install ok installed libstdc++6:amd64 libstdc++6 12-20220319-1 install ok installed libsystemd0:amd64 libsystemd0 250.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libvulkan1:amd64 libvulkan1 1.3.204.1-2 install ok installed libx11-6:amd64 libx11-6 2:1.7.5-1 install ok installed libx11-data libx11-data 2:1.7.5-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.7.5-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.14-3 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.14-3 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.14-3 install ok installed libxcb-present0:amd64 libxcb-present0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.14-3 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-1 install ok installed libxi6:amd64 libxi6 2:1.8-1 install ok installed libxml2:amd64 libxml2 2.9.13+dfsg-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-1+b1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.14.1+1-1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.14.1+1-1 install ok installed openssl openssl 1.1.1n-1 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-4 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022a-1 install ok installed ucf ucf 3.0043 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed x11-common x11-common 1:7.7+23 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmd0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'sensible-utils', 'ucf', 'x11-common', 'alien-hunter'] 0m43.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: alien-hunter ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.9-java libbrotli1 libbsd0 libbytecode-java libcommons-cli-java libcommons-collections3-java libcommons-dbcp-java libcommons-pool-java libcups2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libfontconfig1 libfreetype6 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libguava-java libharfbuzz0b libhsqldb-java libicu67 libjgraph-java libjgrapht0.8-java libjpeg62-turbo libjsr305-java liblcms2-2 libllvm13 libmd0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libpng16-16 libsensors-config libsensors5 libservlet-api-java libsqlite3-0 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 openjdk-11-jre openjdk-11-jre-headless openssl sensible-utils ucf x11-common 0 upgraded, 0 newly installed, 94 to remove and 0 not upgraded. After this operation, 422 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8824 files and directories currently installed.) Removing alien-hunter (1.7-10) ... Removing libbytecode-java (0.92.svn.20090106-2.1) ... Removing default-jre (2:1.11-72) ... Removing openjdk-11-jre:amd64 (11.0.14.1+1-1) ... Removing default-jre-headless (2:1.11-72) ... Removing libbiojava-java (1:1.9.5+dfsg-2) ... Removing libbiojava1.9-java (1:1.9.5+dfsg-2) ... Removing libguava-java (29.0-6) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libgl1:amd64 (1.4.0-1) ... Removing libglx0:amd64 (1.4.0-1) ... Removing libglx-mesa0:amd64 (21.3.8-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libgl1-mesa-dri:amd64 (21.3.8-1) ... Removing libllvm13:amd64 (1:13.0.1-3+b2) ... Removing libedit2:amd64 (3.1-20210910-1) ... Removing libcommons-cli-java (1.4-2) ... Removing libcommons-collections3-java (3.2.2-2) ... Removing libcommons-dbcp-java (1.4-7) ... Removing libcommons-pool-java (1.6-4) ... Removing libdrm-amdgpu1:amd64 (2.4.110-1) ... Removing libdrm-radeon1:amd64 (2.4.110-1) ... Removing libdrm-nouveau2:amd64 (2.4.110-1) ... Removing libdrm-intel1:amd64 (2.4.110-1) ... Removing libelf1:amd64 (0.186-1) ... Removing libgif7:amd64 (5.1.9-2) ... Removing libglapi-mesa:amd64 (21.3.8-1) ... Removing libglvnd0:amd64 (1.4.0-1) ... Removing libhsqldb-java (2.6.1-1) ... Removing libxml2:amd64 (2.9.13+dfsg-1) ... Removing libicu67:amd64 (67.1-7) ... Removing libjgrapht0.8-java (0.8.3-5) ... Removing libjgraph-java (5.12.4.2+dfsg-5.1) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing libpciaccess0:amd64 (0.16-3) ... Removing libsensors5:amd64 (1:3.6.0-7) ... Removing libsensors-config (1:3.6.0-7) ... Removing libservlet-api-java (4.0.1-2) ... Removing libvulkan1:amd64 (1.3.204.1-2) ... Removing libx11-xcb1:amd64 (2:1.7.5-1) ... Removing libxcb-dri2-0:amd64 (1.14-3) ... Removing libxcb-dri3-0:amd64 (1.14-3) ... Removing libxcb-glx0:amd64 (1.14-3) ... Removing libxcb-present0:amd64 (1.14-3) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxcb-sync1:amd64 (1.14-3) ... Removing libxcb-xfixes0:amd64 (1.14-3) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.8-1) ... Removing libxext6:amd64 (2:1.3.4-1) ... Removing libxfixes3:amd64 (1:6.0.0-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libz3-4:amd64 (4.8.12-1+b1) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libx11-6:amd64 (2:1.7.5-1) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.6-1) ... Removing libdrm2:amd64 (2.4.110-1) ... Removing libdrm-common (2.4.110-1) ... Removing libmd0:amd64 (1.0.4-1) ... Removing libx11-data (2:1.7.5-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing openjdk-11-jre-headless:amd64 (11.0.14.1+1-1) ... Removing libfontconfig1:amd64 (2.13.1-4.4) ... Removing fontconfig-config (2.13.1-4.4) ... Removing fonts-dejavu-core (2.37-2) ... Removing java-common (0.72) ... Removing libasound2:amd64 (1.2.6.1-2+b1) ... Removing libasound2-data (1.2.6.1-2) ... Removing libcups2:amd64 (2.4.1op1-2) ... Removing libavahi-client3:amd64 (0.8-5) ... Removing libavahi-common3:amd64 (0.8-5) ... Removing libavahi-common-data:amd64 (0.8-5) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libfreetype6:amd64 (2.11.1+dfsg-1) ... Removing libbrotli1:amd64 (1.0.9-2+b3) ... Removing libdbus-1-3:amd64 (1.14.0-1) ... Removing libexpat1:amd64 (2.4.8-1) ... Removing libglib2.0-0:amd64 (2.72.0-1+b1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libpcsclite1:amd64 (1.9.5-3) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Removing ca-certificates-java (20190909) ... Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libnss3:amd64 (2:3.77-1) ... Removing libnspr4:amd64 (2:4.33-1) ... Removing libsqlite3-0:amd64 (3.38.2-1) ... Removing openssl (1.1.1n-1) ... Processing triggers for libc-bin (2.33-7) ... 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmd0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'sensible-utils', 'ucf', 'x11-common', 'alien-hunter'] 0m43.5s INFO: Running scripts post_remove 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_remove_exceptions'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_remove_exceptions'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmd0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'sensible-utils', 'ucf', 'x11-common'] 0m44.0s DUMP: (Reading database ... 6767 files and directories currently installed.) Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190909) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig-config (2.13.1-4.4) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... Purging configuration files for java-common (0.72) ... dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbiojava-java which isn't installed dpkg: warning: ignoring request to remove libbiojava1.9-java which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libbytecode-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-collections3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-dbcp-java which isn't installed dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (21.3.8-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.72.0-1+b1) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhsqldb-java which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libjgraph-java which isn't installed dpkg: warning: ignoring request to remove libjgrapht0.8-java which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libllvm13 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed Purging configuration files for libsensors-config (1:3.6.0-7) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libservlet-api-java which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove openjdk-11-jre which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.14.1+1-1) ... Purging configuration files for openssl (1.1.1n-1) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for x11-common (1:7.7+23) ... 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbiojava-java', 'libbiojava1.9-java', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbytecode-java', 'libcommons-cli-java', 'libcommons-collections3-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libhsqldb-java', 'libicu67:amd64', 'libjgraph-java', 'libjgrapht0.8-java', 'libjpeg62-turbo:amd64', 'libjsr305-java', 'liblcms2-2:amd64', 'libllvm13:amd64', 'libmd0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsensors-config', 'libsensors5:amd64', 'libservlet-api-java', 'libsqlite3-0:amd64', 'libvulkan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'sensible-utils', 'ucf', 'x11-common'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--purge', 'alien-hunter'] 0m44.0s DUMP: dpkg: warning: ignoring request to remove alien-hunter which isn't installed 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--purge', 'alien-hunter'] 0m44.0s INFO: Running scripts post_purge 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_purge_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_purge_exceptions'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--purge', '--pending'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--purge', '--pending'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--remove', '--pending'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg', '--remove', '--pending'] 0m44.0s INFO: Running scripts post_test 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_test_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'tmp/scripts/post_test_exceptions'] 0m44.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m44.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg-divert', '--list'] 0m44.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'dpkg-divert', '--list'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'clean'] 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy983k_gx', 'apt-get', 'clean'] 0m44.3s DEBUG: Recording chroot state 0m44.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/shm'] 0m44.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/shm'] 0m44.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/console'] 0m44.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/console'] 0m44.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/ptmx'] 0m45.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/ptmx'] 0m45.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/pts'] 0m45.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/dev/pts'] 0m45.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/proc'] 0m45.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy983k_gx/proc'] 0m45.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m45.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpy983k_gx'] 0m45.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpy983k_gx 0m45.1s INFO: PASS: Upgrading between Debian distributions. 0m45.1s INFO: PASS: All tests. 0m45.1s INFO: piuparts run ends. ret=0 End: 2022-04-12 00:11:13 GMT