Start: 2019-09-13 16:38:24 UTC [testing] Package: arden Version: 1.0-4 Installed-Size: 1155 Maintainer: Debian Med Packaging Team Architecture: all Depends: python:any (>= 2.7.5-5~), python-scipy, python-numpy, python-htseq, python-matplotlib Description: specificity control for read alignments using an artificial reference Homepage: http://sourceforge.net/projects/arden/ Description-md5: d4e3cbc891f56c41cb4a95fba3d615e8 Section: science Priority: optional Filename: pool/main/a/arden/arden_1.0-4_all.deb Size: 88788 MD5sum: 82812f6d7223c4ab21feaca81abaf7df SHA256: 7d3e2214d7c3376a7beba8335bbffaee323bb4db41d47b60be238a8d1878b9bb [sid] Package: arden Version: 1.0-5 Installed-Size: 1156 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-htseq, python3-matplotlib Description: specificity control for read alignments using an artificial reference Homepage: http://sourceforge.net/projects/arden/ Description-md5: d4e3cbc891f56c41cb4a95fba3d615e8 Section: science Priority: optional Filename: pool/main/a/arden/arden_1.0-5_all.deb Size: 89304 MD5sum: 7620c514cfc2a69685f53b0ca3098866 SHA256: dbcf89f3dd946bdb1b92d4be73cbc63243d9b55ef052cc24e24e130778fdca7c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt arden=1.0-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.0.2~201909101611~1.0.1-11-g98f8c745 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt arden=1.0-5 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2 (2019-08-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpfvKRyh 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpfvKRyh 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpfvKRyh/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'update'] 0m6.1s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [109 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7798 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5882 kB] Fetched 13.8 MB in 3s (4417 kB/s) Reading package lists... 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'update'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: debianutils findutils libbz2-1.0 libsystemd0 libudev1 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1333 kB of archives. After this operation, 3072 B disk space will be freed. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 debianutils amd64 4.9 [101 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 findutils amd64 4.7.0-1 [685 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsystemd0 amd64 242-7 [343 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbz2-1.0 amd64 1.0.8-2 [45.6 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 libudev1 amd64 242-7 [159 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1333 kB in 0s (47.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../debianutils_4.9_amd64.deb ... Unpacking debianutils (4.9) over (4.8.6.3) ... Setting up debianutils (4.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../findutils_4.7.0-1_amd64.deb ... Unpacking findutils (4.7.0-1) over (4.6.0+git+20190510-2) ... Setting up findutils (4.7.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libsystemd0_242-7_amd64.deb ... Unpacking libsystemd0:amd64 (242-7) over (242-5) ... Setting up libsystemd0:amd64 (242-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-2) over (1.0.6-9.2) ... Setting up libbz2-1.0:amd64 (1.0.8-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6498 files and directories currently installed.) Preparing to unpack .../libudev1_242-7_amd64.deb ... Unpacking libudev1:amd64 (242-7) over (242-5) ... Setting up libudev1:amd64 (242-7) ... Processing triggers for libc-bin (2.28-10) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s DUMP: 61c237720b7453cf1ccd413a3c5f0a09 - 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s INFO: Running scripts post_setup 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.3 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.3-4 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-4 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.22+b1 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.3-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.45.3-4 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-2 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.9-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+b1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20190803-1 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.16.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.32-5+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.1-2 install ok installed libselinux1:amd64 libselinux1 2.9-2+b2 install ok installed libsemanage-common libsemanage-common 2.9-3 install ok installed libsemanage1:amd64 libsemanage1 2.9-3 install ok installed libsepol1:amd64 libsepol1 2.9-2+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.3-4 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-4 install ok installed libsystemd0:amd64 libsystemd0 242-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.14-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20190803-1 install ok installed libudev1:amd64 libudev1 242-7 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.3+dfsg-1 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.3-4 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20190803-1 install ok installed ncurses-bin ncurses-bin 6.1+20190803-1 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96~beta-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019b-2 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m8.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m8.8s INFO: Running scripts is_testable 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/is_testable_uninstallable'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/is_testable_uninstallable'] 0m8.8s INFO: Running scripts pre_test 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_test_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_test_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_test_root_password'] 0m8.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_test_root_password'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'show', '--no-all-versions', 'arden'] 0m9.0s DUMP: Package: arden Version: 1.0-4 Installed-Size: 1155 Maintainer: Debian Med Packaging Team Architecture: all Depends: python:any (>= 2.7.5-5~), python-scipy, python-numpy, python-htseq, python-matplotlib Description-en: specificity control for read alignments using an artificial reference ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation. Description-md5: d4e3cbc891f56c41cb4a95fba3d615e8 Homepage: http://sourceforge.net/projects/arden/ Section: science Priority: optional Filename: pool/main/a/arden/arden_1.0-4_all.deb Size: 88788 MD5sum: 82812f6d7223c4ab21feaca81abaf7df SHA256: 7d3e2214d7c3376a7beba8335bbffaee323bb4db41d47b60be238a8d1878b9bb 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'show', '--no-all-versions', 'arden'] 0m9.0s INFO: apt-cache knows about the following packages: arden 0m9.0s INFO: Running scripts pre_install 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_database-server'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_database-server'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_exceptions'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy'] 0m9.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy', 'arden'] 0m9.2s DUMP: arden: Installed: (none) Candidate: 1.0-4 Version table: 1.0-4 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy', 'arden'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-y', 'install', 'arden'] 0m23.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: fonts-lyx libblas3 libcurl3-gnutls libdeflate0 libexpat1 libfreetype6 libgfortran5 libgssapi-krb5-2 libhts2 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.4-2 libldap-common libnghttp2-14 libpng16-16 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 mime-support python python-backports.functools-lru-cache python-cycler python-dateutil python-decorator python-htseq python-kiwisolver python-matplotlib python-matplotlib2-data python-minimal python-numpy python-pkg-resources python-pyparsing python-pysam python-scipy python-six python-subprocess32 python-tz python2 python2-minimal python2.7 python2.7-minimal readline-common ttf-bitstream-vera Suggested packages: krb5-doc krb5-user libjs-jquery-ui-docs python-doc python-tk python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython librsvg2-common python-cairocffi python-configobj python-excelerator python-gi python-gobject-2 python-matplotlib2-doc python-nose python-qt4 python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft gcc gfortran python-dev python-pytest python-numpy-dbg python-numpy-doc python-setuptools python-pyparsing-doc python-scipy-doc python2-doc python2.7-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates javascript-common krb5-locales publicsuffix libsasl2-modules bzip2 file xz-utils python-pil python-tk g++ | c++-compiler python-dev The following NEW packages will be installed: arden fonts-lyx libblas3 libcurl3-gnutls libdeflate0 libexpat1 libfreetype6 libgfortran5 libgssapi-krb5-2 libhts2 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.4-2 libldap-common libnghttp2-14 libpng16-16 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 mime-support python python-backports.functools-lru-cache python-cycler python-dateutil python-decorator python-htseq python-kiwisolver python-matplotlib python-matplotlib2-data python-minimal python-numpy python-pkg-resources python-pyparsing python-pysam python-scipy python-six python-subprocess32 python-tz python2 python2-minimal python2.7 python2.7-minimal readline-common ttf-bitstream-vera 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 38.4 MB of archives. After this operation, 136 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpython2.7-minimal amd64 2.7.16-4 [395 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 python2.7-minimal amd64 2.7.16-4 [1357 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 mime-support all 3.63 [37.7 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.7-2 [92.7 kB] Get:8 http://mirror-ubc.debian.org/debian bullseye/main amd64 readline-common all 8.0-3 [72.5 kB] Get:9 http://mirror-ubc.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:10 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.29.0-2 [646 kB] Get:11 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpython2.7-stdlib amd64 2.7.16-4 [1886 kB] Get:12 http://mirror-ubc.debian.org/debian bullseye/main amd64 python2.7 amd64 2.7.16-4 [305 kB] Get:13 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:14 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:15 http://mirror-ubc.debian.org/debian bullseye/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:16 http://mirror-ubc.debian.org/debian bullseye/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:17 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-decorator all 4.3.0-1.1 [14.4 kB] Get:18 http://mirror-ubc.debian.org/debian bullseye/main amd64 libquadmath0 amd64 9.2.1-4 [145 kB] Get:19 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgfortran5 amd64 9.2.1-4 [634 kB] Get:20 http://mirror-ubc.debian.org/debian bullseye/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:21 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:22 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-pkg-resources all 41.2.0-1 [183 kB] Get:23 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-numpy amd64 1:1.16.2-1+b1 [2148 kB] Get:24 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-7 [29.5 kB] Get:25 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-scipy amd64 1.2.2-7 [10.8 MB] Get:26 http://mirror-ubc.debian.org/debian bullseye/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:27 http://mirror-ubc.debian.org/debian bullseye/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:28 http://mirror-ubc.debian.org/debian bullseye/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:29 http://mirror-ubc.debian.org/debian bullseye/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:30 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:31 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:32 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:33 http://mirror-ubc.debian.org/debian bullseye/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:34 http://mirror-ubc.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1 [226 kB] Get:35 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.39.2-1 [82.4 kB] Get:36 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:37 http://mirror-ubc.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:38 http://mirror-ubc.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:39 http://mirror-ubc.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.65.3-1 [334 kB] Get:40 http://mirror-ubc.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:41 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhts2 amd64 1.9-11 [305 kB] Get:42 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-pysam amd64 0.15.2+ds-2 [1629 kB] Get:43 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-htseq amd64 0.11.2-1 [231 kB] Get:44 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get:45 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-six all 1.12.0-2 [15.7 kB] Get:46 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-dateutil all 2.7.3-3 [76.8 kB] Get:47 http://mirror-ubc.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.3-2 [199 kB] Get:48 http://mirror-ubc.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:49 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get:50 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-pyparsing all 2.4.2-1 [106 kB] Get:51 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-tz all 2019.2-2 [33.7 kB] Get:52 http://mirror-ubc.debian.org/debian bullseye/main amd64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get:53 http://mirror-ubc.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:54 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-cycler all 0.10.0-1 [7448 B] Get:55 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-kiwisolver amd64 1.0.1-2+b1 [67.3 kB] Get:56 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-subprocess32 amd64 3.5.3-1+b1 [30.3 kB] Get:57 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-1 [292 kB] Get:58 http://mirror-ubc.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.9.1-4 [379 kB] Get:59 http://mirror-ubc.debian.org/debian bullseye/main amd64 python-matplotlib amd64 2.2.3-6 [5073 kB] Get:60 http://mirror-ubc.debian.org/debian bullseye/main amd64 arden all 1.0-4 [88.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.4 MB in 1s (39.6 MB/s) Selecting previously unselected package libpython2.7-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6500 files and directories currently installed.) Preparing to unpack .../00-libpython2.7-minimal_2.7.16-4_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-4) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../01-python2.7-minimal_2.7.16-4_amd64.deb ... Unpacking python2.7-minimal (2.7.16-4) ... Selecting previously unselected package python2-minimal. 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Preparing to unpack .../44-arden_1.0-4_all.deb ... Unpacking arden (1.0-4) ... Setting up libexpat1:amd64 (2.2.7-2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.63) ... Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up fonts-lyx (2.3.3-2) ... Setting up libsqlite3-0:amd64 (3.29.0-2) ... Setting up libnghttp2-14:amd64 (1.39.2-1) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libquadmath0:amd64 (9.2.1-4) ... Setting up libpng16-16:amd64 (1.6.37-1) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up libgfortran5:amd64 (9.2.1-4) ... Setting up python-matplotlib2-data (2.2.3-6) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up readline-common (8.0-3) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-4) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libfreetype6:amd64 (2.9.1-4) ... Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up python2.7 (2.7.16-4) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libcurl3-gnutls:amd64 (7.65.3-1) ... Setting up python2 (2.7.16-1) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-7) ... Setting up libhts2:amd64 (1.9-11) ... Setting up python-pkg-resources (41.2.0-1) ... Setting up python-decorator (4.3.0-1.1) ... Setting up python-six (1.12.0-2) ... Setting up python-pyparsing (2.4.2-1) ... Setting up python-dateutil (2.7.3-3) ... Setting up python-subprocess32 (3.5.3-1+b1) ... Setting up python-backports.functools-lru-cache (1.5-3) ... Setting up python-tz (2019.2-2) ... Setting up python-kiwisolver (1.0.1-2+b1) ... Setting up python-pysam (0.15.2+ds-2) ... Setting up python-numpy (1:1.16.2-1+b1) ... Setting up python-cycler (0.10.0-1) ... Setting up python-scipy (1.2.2-7) ... Setting up python-htseq (0.11.2-1) ... Setting up python-matplotlib (2.2.3-6) ... Setting up arden (1.0-4) ... Processing triggers for libc-bin (2.28-10) ... 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-y', 'install', 'arden'] 0m23.6s INFO: Running scripts post_install 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_install_exceptions'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_install_exceptions'] 0m23.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m24.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m24.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpfvKRyh to sid 0m24.1s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m24.1s INFO: Running scripts pre_distupgrade 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'update'] 0m28.8s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [139 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8298 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6204 kB] Fetched 14.6 MB in 4s (4014 kB/s) Reading package lists... 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'update'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-yf', 'dist-upgrade'] 0m48.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib python python-backports.functools-lru-cache python-cycler python-dateutil python-decorator python-htseq python-kiwisolver python-matplotlib python-matplotlib2-data python-minimal python-numpy python-pkg-resources python-pyparsing python-pysam python-scipy python-six python-subprocess32 python-tz python2 python2-minimal python2.7 python2.7-minimal Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libmpdec2 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib python-matplotlib-data python3 python3-cycler python3-dateutil python3-decorator python3-htseq python3-kiwisolver python3-matplotlib python3-minimal python3-numpy python3-pkg-resources python3-pyparsing python3-pysam python3-scipy python3-six python3.7 python3.7-minimal The following packages will be upgraded: arden gcc-9-base libc-bin libc6 libdeflate0 libgcc1 libgfortran5 libhogweed4 libidn2-0 libnettle6 libquadmath0 libstdc++6 python-matplotlib python-matplotlib2-data python-numpy python-subprocess32 tzdata 17 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. Need to get 46.9 MB of archives. After this operation, 116 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-9-base amd64 9.2.1-8 [193 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libgcc1 amd64 1:9.2.1-8 [40.5 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libquadmath0 amd64 9.2.1-8 [144 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libc6 amd64 2.29-1 [2820 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libc-bin amd64 2.29-1 [790 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 libgfortran5 amd64 9.2.1-8 [634 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libstdc++6 amd64 9.2.1-8 [501 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libpython3.7-minimal amd64 3.7.4-4 [590 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 python3.7-minimal amd64 3.7.4-4 [1811 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 libpython3.7-stdlib amd64 3.7.4-4 [1730 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 python3.7 amd64 3.7.4-4 [340 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:15 http://mirror-ubc.debian.org/debian sid/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:16 http://mirror-ubc.debian.org/debian sid/main amd64 libnettle6 amd64 3.5.1+really3.4.1-1 [215 kB] Get:17 http://mirror-ubc.debian.org/debian sid/main amd64 libhogweed4 amd64 3.5.1+really3.4.1-1 [141 kB] Get:18 http://mirror-ubc.debian.org/debian sid/main amd64 libidn2-0 amd64 2.2.0-2 [82.8 kB] Get:19 http://mirror-ubc.debian.org/debian sid/main amd64 tzdata all 2019c-1 [259 kB] Get:20 http://mirror-ubc.debian.org/debian sid/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:21 http://mirror-ubc.debian.org/debian sid/main amd64 python3-pkg-resources all 41.2.0-1 [154 kB] Get:22 http://mirror-ubc.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.16.5-1 [2142 kB] Get:23 http://mirror-ubc.debian.org/debian sid/main amd64 python3-scipy amd64 1.2.2-7 [10.7 MB] Get:24 http://mirror-ubc.debian.org/debian sid/main amd64 python3-pysam amd64 0.15.2+ds-2 [1661 kB] Get:25 http://mirror-ubc.debian.org/debian sid/main amd64 python3-htseq amd64 0.11.2-1 [244 kB] Get:26 http://mirror-ubc.debian.org/debian sid/main amd64 python3-six all 1.12.0-2 [15.8 kB] Get:27 http://mirror-ubc.debian.org/debian sid/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:28 http://mirror-ubc.debian.org/debian sid/main amd64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get:29 http://mirror-ubc.debian.org/debian sid/main amd64 python3-pyparsing all 2.4.2-1 [106 kB] Get:30 http://mirror-ubc.debian.org/debian sid/main amd64 python3-cycler all 0.10.0-1 [7556 B] Get:31 http://mirror-ubc.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.0.1-2+b1 [65.4 kB] Get:32 http://mirror-ubc.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.0.2-2+b1 [5372 kB] Get:33 http://mirror-ubc.debian.org/debian sid/main amd64 arden all 1.0-5 [89.3 kB] Get:34 http://mirror-ubc.debian.org/debian sid/main amd64 libdeflate0 amd64 1.3-2 [87.3 kB] Get:35 http://mirror-ubc.debian.org/debian sid/main amd64 python-matplotlib2-data all 2.2.4-1 [4123 kB] Get:36 http://mirror-ubc.debian.org/debian sid/main amd64 python-numpy amd64 1:1.16.5-1 [2153 kB] Get:37 http://mirror-ubc.debian.org/debian sid/main amd64 python-subprocess32 amd64 3.5.4-1 [30.5 kB] Get:38 http://mirror-ubc.debian.org/debian sid/main amd64 python-matplotlib amd64 2.2.4-1 [5180 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.9 MB in 1s (50.0 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10440 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.4-4_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.4-4) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.4-4_amd64.deb ... Unpacking python3.7-minimal (3.7.4-4) ... Setting up libpython3.7-minimal:amd64 (3.7.4-4) ... Setting up python3.7-minimal (3.7.4-4) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10680 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../libpython3.7-stdlib_3.7.4-4_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.4-4) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.4-4_amd64.deb ... Unpacking python3.7 (3.7.4-4) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11093 files and directories currently installed.) Preparing to unpack .../python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Preparing to unpack .../libnettle6_3.5.1+really3.4.1-1_amd64.deb ... Unpacking libnettle6:amd64 (3.5.1+really3.4.1-1) over (3.4.1-1+b1) ... Setting up libnettle6:amd64 (3.5.1+really3.4.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11125 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.5.1+really3.4.1-1_amd64.deb ... Unpacking libhogweed4:amd64 (3.5.1+really3.4.1-1) over (3.4.1-1+b1) ... Setting up libhogweed4:amd64 (3.5.1+really3.4.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11125 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.2.0-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.2.0-2) over (2.2.0-1) ... Setting up libidn2-0:amd64 (2.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11125 files and directories currently installed.) Preparing to unpack .../00-tzdata_2019c-1_all.deb ... Unpacking tzdata (2019c-1) over (2019b-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../01-python3-decorator_4.3.0-1.1_all.deb ... Unpacking python3-decorator (4.3.0-1.1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../02-python3-pkg-resources_41.2.0-1_all.deb ... Unpacking python3-pkg-resources (41.2.0-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../03-python3-numpy_1%3a1.16.5-1_amd64.deb ... Unpacking python3-numpy (1:1.16.5-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../04-python3-scipy_1.2.2-7_amd64.deb ... Unpacking python3-scipy (1.2.2-7) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../05-python3-pysam_0.15.2+ds-2_amd64.deb ... Unpacking python3-pysam (0.15.2+ds-2) ... Selecting previously unselected package python3-htseq. Preparing to unpack .../06-python3-htseq_0.11.2-1_amd64.deb ... Unpacking python3-htseq (0.11.2-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../07-python3-six_1.12.0-2_all.deb ... Unpacking python3-six (1.12.0-2) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../08-python3-dateutil_2.7.3-3_all.deb ... Unpacking python3-dateutil (2.7.3-3) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../09-python-matplotlib-data_3.0.2-2_all.deb ... Unpacking python-matplotlib-data (3.0.2-2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../10-python3-pyparsing_2.4.2-1_all.deb ... Unpacking python3-pyparsing (2.4.2-1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../11-python3-cycler_0.10.0-1_all.deb ... Unpacking python3-cycler (0.10.0-1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../12-python3-kiwisolver_1.0.1-2+b1_amd64.deb ... Unpacking python3-kiwisolver (1.0.1-2+b1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../13-python3-matplotlib_3.0.2-2+b1_amd64.deb ... Unpacking python3-matplotlib (3.0.2-2+b1) ... Preparing to unpack .../14-arden_1.0-5_all.deb ... Unpacking arden (1.0-5) over (1.0-4) ... Preparing to unpack .../15-libdeflate0_1.3-2_amd64.deb ... Unpacking libdeflate0 (1.3-2) over (1.2-1) ... Preparing to unpack .../16-python-matplotlib2-data_2.2.4-1_all.deb ... Unpacking python-matplotlib2-data (2.2.4-1) over (2.2.3-6) ... Preparing to unpack .../17-python-numpy_1%3a1.16.5-1_amd64.deb ... Unpacking python-numpy (1:1.16.5-1) over (1:1.16.2-1+b1) ... Preparing to unpack .../18-python-subprocess32_3.5.4-1_amd64.deb ... Unpacking python-subprocess32 (3.5.4-1) over (3.5.3-1+b1) ... Preparing to unpack .../19-python-matplotlib_2.2.4-1_amd64.deb ... Unpacking python-matplotlib (2.2.4-1) over (2.2.3-6) ... Setting up python-numpy (1:1.16.5-1) ... Setting up libdeflate0 (1.3-2) ... Setting up tzdata (2019c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 13 16:39:04 UTC 2019. Universal Time is now: Fri Sep 13 16:39:04 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up python-subprocess32 (3.5.4-1) ... Setting up libquadmath0:amd64 (9.2.1-8) ... Setting up libgfortran5:amd64 (9.2.1-8) ... Setting up python-matplotlib2-data (2.2.4-1) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up python-matplotlib-data (3.0.2-2) ... Setting up libpython3.7-stdlib:amd64 (3.7.4-4) ... Setting up python-matplotlib (2.2.4-1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3.7 (3.7.4-4) ... Setting up python3 (3.7.3-1) ... Setting up python3-six (1.12.0-2) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up python3-pyparsing (2.4.2-1) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up python3-pkg-resources (41.2.0-1) ... Setting up python3-pysam (0.15.2+ds-2) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python3-numpy (1:1.16.5-1) ... Setting up python3-htseq (0.11.2-1) ... Setting up python3-matplotlib (3.0.2-2+b1) ... Setting up python3-scipy (1.2.2-7) ... Setting up arden (1.0-5) ... Processing triggers for libc-bin (2.29-1) ... Processing triggers for mime-support (3.63) ... 0m48.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-yf', 'dist-upgrade'] 0m48.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m48.6s DUMP: 94c3cb875df9af5f53593fb5cef63707 - 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'show', '--no-all-versions', 'arden'] 0m48.8s DUMP: Package: arden Version: 1.0-5 Installed-Size: 1156 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-htseq, python3-matplotlib Description-en: specificity control for read alignments using an artificial reference ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation. Description-md5: d4e3cbc891f56c41cb4a95fba3d615e8 Homepage: http://sourceforge.net/projects/arden/ Section: science Priority: optional Filename: pool/main/a/arden/arden_1.0-5_all.deb Size: 89304 MD5sum: 7620c514cfc2a69685f53b0ca3098866 SHA256: dbcf89f3dd946bdb1b92d4be73cbc63243d9b55ef052cc24e24e130778fdca7c 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'show', '--no-all-versions', 'arden'] 0m48.8s INFO: apt-cache knows about the following packages: arden 0m48.8s INFO: Running scripts pre_install 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_database-server'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_database-server'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_exceptions'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_exceptions'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_extras'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_extras'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy'] 0m48.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy'] 0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy', 'arden'] 0m49.0s DUMP: arden: Installed: 1.0-5 Candidate: 1.0-5 Version table: *** 1.0-5 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m49.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy', 'arden'] 0m49.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-y', 'install', 'arden'] 0m49.3s DUMP: Reading package lists... Building dependency tree... Reading state information... arden is already the newest version (1.0-5). The following packages were automatically installed and are no longer required: libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib python python-backports.functools-lru-cache python-cycler python-dateutil python-decorator python-htseq python-kiwisolver python-matplotlib python-matplotlib2-data python-minimal python-numpy python-pkg-resources python-pyparsing python-pysam python-scipy python-six python-subprocess32 python-tz python2 python2-minimal python2.7 python2.7-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-y', 'install', 'arden'] 0m49.3s INFO: Running scripts post_install 0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_install_exceptions'] 0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_install_exceptions'] 0m49.3s INFO: Running scripts post_distupgrade 0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_exceptions'] 0m49.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_exceptions'] 0m49.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m49.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m50.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m50.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m51.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m51.1s INFO: Running scripts pre_install 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_database-server'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_database-server'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_exceptions'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_exceptions'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_extras'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_extras'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy'] 0m51.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy'] 0m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy', 'arden'] 0m51.2s DUMP: arden: Installed: 1.0-5 Candidate: 1.0-5 Version table: *** 1.0-5 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-cache', 'policy', 'arden'] 0m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-y', 'install', 'arden=1.0-5'] 0m51.6s DUMP: Reading package lists... Building dependency tree... Reading state information... arden is already the newest version (1.0-5). The following packages were automatically installed and are no longer required: libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib python python-backports.functools-lru-cache python-cycler python-dateutil python-decorator python-htseq python-kiwisolver python-matplotlib python-matplotlib2-data python-minimal python-numpy python-pkg-resources python-pyparsing python-pysam python-scipy python-six python-subprocess32 python-tz python2 python2-minimal python2.7 python2.7-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', '-y', 'install', 'arden=1.0-5'] 0m51.6s INFO: Running scripts post_install 0m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_install_exceptions'] 0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_install_exceptions'] 0m51.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m52.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m52.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', '-ac', '--ignore-obsolete'] 0m54.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', '-ac', '--ignore-obsolete'] 0m54.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.3s DUMP: 0.15.2 0m54.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.3s INFO: Running adequate version 0.15.2 now. 0m54.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'arden'] 0m54.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'arden'] 0m54.3s INFO: Running scripts pre_remove 0m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_exceptions'] 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/pre_remove_exceptions'] 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m55.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.3 install ok installed arden arden 1.0-5 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.3-4 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed fonts-lyx fonts-lyx 2.3.3-2 install ok installed gcc-9-base:amd64 gcc-9-base 9.2.1-8 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+b1 install ok installed hostname hostname 3.22+b1 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.29-1 install ok installed libc6:amd64 libc6 2.29-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.3-4 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.65.3-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdeflate0 libdeflate0 1.3-2 install ok installed libexpat1:amd64 libexpat1 2.2.7-2 install ok installed libext2fs2:amd64 libext2fs2 1.45.3-4 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-4 install ok installed libgcc1:amd64 libgcc1 1:9.2.1-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-2 install ok installed libgfortran5:amd64 libgfortran5 9.2.1-8 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.9-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-6 install ok installed libhogweed4:amd64 libhogweed4 3.5.1+really3.4.1-1 install ok installed libhts2:amd64 libhts2 1.9-11 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-2 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-6 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-7 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.48+dfsg-1 install ok installed libldap-common libldap-common 2.4.48+dfsg-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+b1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20190803-1 install ok installed libnettle6:amd64 libnettle6 3.5.1+really3.4.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.39.2-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.16.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.32-5+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-1 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-4 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-4 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.4-4 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.4-4 install ok installed libquadmath0:amd64 libquadmath0 9.2.1-8 install ok installed libreadline8:amd64 libreadline8 8.0-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1 install ok installed libseccomp2:amd64 libseccomp2 2.4.1-2 install ok installed libselinux1:amd64 libselinux1 2.9-2+b2 install ok installed libsemanage-common libsemanage-common 2.9-3 install ok installed libsemanage1:amd64 libsemanage1 2.9-3 install ok installed libsepol1:amd64 libsepol1 2.9-2+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.29.0-2 install ok installed libss2:amd64 libss2 1.45.3-4 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1c-1 install ok installed libstdc++6:amd64 libstdc++6 9.2.1-8 install ok installed libsystemd0:amd64 libsystemd0 242-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.14-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20190803-1 install ok installed libudev1:amd64 libudev1 242-7 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.3+dfsg-1 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.3-4 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.63 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20190803-1 install ok installed ncurses-bin ncurses-bin 6.1+20190803-1 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.28.1-6 install ok installed python python 2.7.16-1 install ok installed python-backports.functools-lru-cache python-backports.functools-lru-cache 1.5-3 install ok installed python-cycler python-cycler 0.10.0-1 install ok installed python-dateutil python-dateutil 2.7.3-3 install ok installed python-decorator python-decorator 4.3.0-1.1 install ok installed python-htseq python-htseq 0.11.2-1 install ok installed python-kiwisolver python-kiwisolver 1.0.1-2+b1 install ok installed python-matplotlib python-matplotlib 2.2.4-1 install ok installed python-matplotlib-data python-matplotlib-data 3.0.2-2 install ok installed python-matplotlib2-data python-matplotlib2-data 2.2.4-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python-numpy python-numpy 1:1.16.5-1 install ok installed python-pkg-resources python-pkg-resources 41.2.0-1 install ok installed python-pyparsing python-pyparsing 2.4.2-1 install ok installed python-pysam python-pysam 0.15.2+ds-2 install ok installed python-scipy python-scipy 1.2.2-7 install ok installed python-six python-six 1.12.0-2 install ok installed python-subprocess32 python-subprocess32 3.5.4-1 install ok installed python-tz python-tz 2019.2-2 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-4 install ok installed python2.7-minimal python2.7-minimal 2.7.16-4 install ok installed python3 python3 3.7.3-1 install ok installed python3-cycler python3-cycler 0.10.0-1 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-htseq python3-htseq 0.11.2-1 install ok installed python3-kiwisolver python3-kiwisolver 1.0.1-2+b1 install ok installed python3-matplotlib python3-matplotlib 3.0.2-2+b1 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-numpy python3-numpy 1:1.16.5-1 install ok installed python3-pkg-resources python3-pkg-resources 41.2.0-1 install ok installed python3-pyparsing python3-pyparsing 2.4.2-1 install ok installed python3-pysam python3-pysam 0.15.2+ds-2 install ok installed python3-scipy python3-scipy 1.2.2-7 install ok installed python3-six python3-six 1.12.0-2 install ok installed python3.7 python3.7 3.7.4-4 install ok installed python3.7-minimal python3.7-minimal 3.7.4-4 install ok installed readline-common readline-common 8.0-3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96~beta-1 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed tzdata tzdata 2019c-1 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'remove', 'python-matplotlib', 'libfreetype6:amd64', 'librtmp1:amd64', 'libgssapi-krb5-2:amd64', 'python3-pyparsing', 'libssh2-1:amd64', 'libldap-2.4-2:amd64', 'python-scipy', 'python3-matplotlib', 'python2-minimal', 'libblas3:amd64', 'ttf-bitstream-vera', 'libpython2.7-minimal:amd64', 'liblbfgsb0:amd64', 'libkeyutils1:amd64', 'libjs-jquery', 'libdeflate0', 'libpython3-stdlib:amd64', 'python-htseq', 'python-pyparsing', 'libsqlite3-0:amd64', 'python3-cycler', 'python3-kiwisolver', 'python2', 'python-six', 'fonts-lyx', 'python-matplotlib-data', 'python3-htseq', 'libpython3.7-stdlib:amd64', 'python3-decorator', 'liblapack3:amd64', 'libssl1.1:amd64', 'libquadmath0:amd64', 'libcurl3-gnutls:amd64', 'libreadline8:amd64', 'libpsl5:amd64', 'libhts2:amd64', 'python-tz', 'libgfortran5:amd64', 'libpython3.7-minimal:amd64', 'python-pysam', 'python3-pysam', 'libpng16-16:amd64', 'python3-pkg-resources', 'python3-dateutil', 'python', 'python2.7', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'python-numpy', 'python3-six', 'python3-minimal', 'libnghttp2-14:amd64', 'python-cycler', 'libmpdec2:amd64', 'readline-common', 'python-dateutil', 'python-decorator', 'mime-support', 'python3.7-minimal', 'python-minimal', 'python-kiwisolver', 'libpython-stdlib:amd64', 'libpython2.7-stdlib:amd64', 'libjs-jquery-ui', 'libldap-common', 'python-pkg-resources', 'python-subprocess32', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'python3.7', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'python2.7-minimal', 'python-matplotlib2-data', 'python3-scipy', 'libpython2-stdlib:amd64', 'python3-numpy', 'python3', 'python-backports.functools-lru-cache', 'arden'] 0m59.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: arden fonts-lyx libblas3 libcurl3-gnutls libdeflate0 libexpat1 libfreetype6 libgfortran5 libgssapi-krb5-2 libhts2 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.4-2 libldap-common libmpdec2 libnghttp2-14 libpng16-16 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl1.1 mime-support python python-backports.functools-lru-cache python-cycler python-dateutil python-decorator python-htseq python-kiwisolver python-matplotlib python-matplotlib-data python-matplotlib2-data python-minimal python-numpy python-pkg-resources python-pyparsing python-pysam python-scipy python-six python-subprocess32 python-tz python2 python2-minimal python2.7 python2.7-minimal python3 python3-cycler python3-dateutil python3-decorator python3-htseq python3-kiwisolver python3-matplotlib python3-minimal python3-numpy python3-pkg-resources python3-pyparsing python3-pysam python3-scipy python3-six python3.7 python3.7-minimal readline-common ttf-bitstream-vera 0 upgraded, 0 newly installed, 81 to remove and 0 not upgraded. After this operation, 252 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13506 files and directories currently installed.) Removing arden (1.0-5) ... Removing python-matplotlib (2.2.4-1) ... Removing python-matplotlib2-data (2.2.4-1) ... Removing python3-matplotlib (3.0.2-2+b1) ... Removing python-matplotlib-data (3.0.2-2) ... Removing fonts-lyx (2.3.3-2) ... Removing python3-scipy (1.2.2-7) ... Removing python-scipy (1.2.2-7) ... Removing python3-htseq (0.11.2-1) ... Removing python3-numpy (1:1.16.5-1) ... Removing python-htseq (0.11.2-1) ... Removing python-numpy (1:1.16.5-1) ... Removing python3-pysam (0.15.2+ds-2) ... Removing python-pysam (0.15.2+ds-2) ... Removing libhts2:amd64 (1.9-11) ... Removing libcurl3-gnutls:amd64 (7.65.3-1) ... Removing libdeflate0 (1.3-2) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-cycler (0.10.0-1) ... Removing python3-six (1.12.0-2) ... Removing python3-kiwisolver (1.0.1-2+b1) ... Removing python3-pkg-resources (41.2.0-1) ... Removing python-subprocess32 (3.5.4-1) ... Removing python-dateutil (2.7.3-3) ... Removing libfreetype6:amd64 (2.9.1-4) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-7) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libgssapi-krb5-2:amd64 (1.17-6) ... Removing libjs-jquery-ui (1.12.1+dfsg-5) ... Removing libjs-jquery (3.3.1~dfsg-3) ... Removing libkrb5-3:amd64 (1.17-6) ... Removing libk5crypto3:amd64 (1.17-6) ... Removing libkrb5support0:amd64 (1.17-6) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Removing libldap-common (2.4.48+dfsg-1) ... Removing libnghttp2-14:amd64 (1.39.2-1) ... Removing libpng16-16:amd64 (1.6.37-1) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing python-backports.functools-lru-cache (1.5-3) ... Removing python-cycler (0.10.0-1) ... Removing python-decorator (4.3.0-1.1) ... Removing python-kiwisolver (1.0.1-2+b1) ... Removing python-pkg-resources (41.2.0-1) ... Removing python-pyparsing (2.4.2-1) ... Removing python-tz (2019.2-2) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-pyparsing (2.4.2-1) ... Removing ttf-bitstream-vera (1.10-8) ... Removing libblas3:amd64 (3.8.0-2) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.4-4) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.4-4) ... Removing python-six (1.12.0-2) ... Removing python (2.7.16-1) ... Removing libgfortran5:amd64 (9.2.1-8) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.4-4) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing libpython3.7-minimal:amd64 (3.7.4-4) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (9.2.1-8) ... Removing python2-minimal (2.7.16-1) ... Removing python2.7 (2.7.16-4) ... Removing libpython2.7-stdlib:amd64 (2.7.16-4) ... Removing libexpat1:amd64 (2.2.7-2) ... Removing python2.7-minimal (2.7.16-4) ... Removing libpython2.7-minimal:amd64 (2.7.16-4) ... find: '/usr/lib/python2.7': No such file or directory Removing libreadline8:amd64 (8.0-3) ... Removing libsqlite3-0:amd64 (3.29.0-2) ... Removing libssl1.1:amd64 (1.1.1c-1) ... Removing mime-support (3.63) ... Removing readline-common (8.0-3) ... Processing triggers for libc-bin (2.29-1) ... 0m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'remove', 'python-matplotlib', 'libfreetype6:amd64', 'librtmp1:amd64', 'libgssapi-krb5-2:amd64', 'python3-pyparsing', 'libssh2-1:amd64', 'libldap-2.4-2:amd64', 'python-scipy', 'python3-matplotlib', 'python2-minimal', 'libblas3:amd64', 'ttf-bitstream-vera', 'libpython2.7-minimal:amd64', 'liblbfgsb0:amd64', 'libkeyutils1:amd64', 'libjs-jquery', 'libdeflate0', 'libpython3-stdlib:amd64', 'python-htseq', 'python-pyparsing', 'libsqlite3-0:amd64', 'python3-cycler', 'python3-kiwisolver', 'python2', 'python-six', 'fonts-lyx', 'python-matplotlib-data', 'python3-htseq', 'libpython3.7-stdlib:amd64', 'python3-decorator', 'liblapack3:amd64', 'libssl1.1:amd64', 'libquadmath0:amd64', 'libcurl3-gnutls:amd64', 'libreadline8:amd64', 'libpsl5:amd64', 'libhts2:amd64', 'python-tz', 'libgfortran5:amd64', 'libpython3.7-minimal:amd64', 'python-pysam', 'python3-pysam', 'libpng16-16:amd64', 'python3-pkg-resources', 'python3-dateutil', 'python', 'python2.7', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'python-numpy', 'python3-six', 'python3-minimal', 'libnghttp2-14:amd64', 'python-cycler', 'libmpdec2:amd64', 'readline-common', 'python-dateutil', 'python-decorator', 'mime-support', 'python3.7-minimal', 'python-minimal', 'python-kiwisolver', 'libpython-stdlib:amd64', 'libpython2.7-stdlib:amd64', 'libjs-jquery-ui', 'libldap-common', 'python-pkg-resources', 'python-subprocess32', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'python3.7', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'python2.7-minimal', 'python-matplotlib2-data', 'python3-scipy', 'libpython2-stdlib:amd64', 'python3-numpy', 'python3', 'python-backports.functools-lru-cache', 'arden'] 0m59.2s INFO: Running scripts post_remove 0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_remove_exceptions'] 0m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_remove_exceptions'] 0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--purge', 'python-matplotlib', 'libfreetype6:amd64', 'librtmp1:amd64', 'libgssapi-krb5-2:amd64', 'python3-pyparsing', 'libssh2-1:amd64', 'libldap-2.4-2:amd64', 'python-scipy', 'python3-matplotlib', 'python2-minimal', 'libblas3:amd64', 'ttf-bitstream-vera', 'libpython2.7-minimal:amd64', 'liblbfgsb0:amd64', 'libkeyutils1:amd64', 'libjs-jquery', 'libdeflate0', 'libpython3-stdlib:amd64', 'python-htseq', 'python-pyparsing', 'libsqlite3-0:amd64', 'python3-cycler', 'python3-kiwisolver', 'python2', 'python-six', 'fonts-lyx', 'python-matplotlib-data', 'python3-htseq', 'libpython3.7-stdlib:amd64', 'python3-decorator', 'liblapack3:amd64', 'libssl1.1:amd64', 'libquadmath0:amd64', 'libcurl3-gnutls:amd64', 'libreadline8:amd64', 'libpsl5:amd64', 'libhts2:amd64', 'python-tz', 'libgfortran5:amd64', 'libpython3.7-minimal:amd64', 'python-pysam', 'python3-pysam', 'libpng16-16:amd64', 'python3-pkg-resources', 'python3-dateutil', 'python', 'python2.7', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'python-numpy', 'python3-six', 'python3-minimal', 'libnghttp2-14:amd64', 'python-cycler', 'libmpdec2:amd64', 'readline-common', 'python-dateutil', 'python-decorator', 'mime-support', 'python3.7-minimal', 'python-minimal', 'python-kiwisolver', 'libpython-stdlib:amd64', 'libpython2.7-stdlib:amd64', 'libjs-jquery-ui', 'libldap-common', 'python-pkg-resources', 'python-subprocess32', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'python3.7', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'python2.7-minimal', 'python-matplotlib2-data', 'python3-scipy', 'libpython2-stdlib:amd64', 'python3-numpy', 'python3', 'python-backports.functools-lru-cache'] 0m59.4s DUMP: dpkg: warning: ignoring request to remove python-matplotlib which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed (Reading database ... 6509 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.17-6) ... dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove python-scipy which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-4) ... dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove python-htseq which isn't installed dpkg: warning: ignoring request to remove python-pyparsing which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python-six which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for python-matplotlib-data (3.0.2-2) ... dpkg: warning: ignoring request to remove python3-htseq which isn't installed dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1c-1) ... dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libhts2 which isn't installed dpkg: warning: ignoring request to remove python-tz which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.4-4) ... dpkg: warning: ignoring request to remove python-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python2.7 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove python-cycler which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed Purging configuration files for readline-common (8.0-3) ... dpkg: warning: ignoring request to remove python-dateutil which isn't installed dpkg: warning: ignoring request to remove python-decorator which isn't installed Purging configuration files for mime-support (3.63) ... Purging configuration files for python3.7-minimal (3.7.4-4) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-kiwisolver which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-5) ... Purging configuration files for libldap-common (2.4.48+dfsg-1) ... dpkg: warning: ignoring request to remove python-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python-subprocess32 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-4) ... Purging configuration files for python-matplotlib2-data (2.2.4-1) ... dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python-backports.functools-lru-cache which isn't installed 0m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--purge', 'python-matplotlib', 'libfreetype6:amd64', 'librtmp1:amd64', 'libgssapi-krb5-2:amd64', 'python3-pyparsing', 'libssh2-1:amd64', 'libldap-2.4-2:amd64', 'python-scipy', 'python3-matplotlib', 'python2-minimal', 'libblas3:amd64', 'ttf-bitstream-vera', 'libpython2.7-minimal:amd64', 'liblbfgsb0:amd64', 'libkeyutils1:amd64', 'libjs-jquery', 'libdeflate0', 'libpython3-stdlib:amd64', 'python-htseq', 'python-pyparsing', 'libsqlite3-0:amd64', 'python3-cycler', 'python3-kiwisolver', 'python2', 'python-six', 'fonts-lyx', 'python-matplotlib-data', 'python3-htseq', 'libpython3.7-stdlib:amd64', 'python3-decorator', 'liblapack3:amd64', 'libssl1.1:amd64', 'libquadmath0:amd64', 'libcurl3-gnutls:amd64', 'libreadline8:amd64', 'libpsl5:amd64', 'libhts2:amd64', 'python-tz', 'libgfortran5:amd64', 'libpython3.7-minimal:amd64', 'python-pysam', 'python3-pysam', 'libpng16-16:amd64', 'python3-pkg-resources', 'python3-dateutil', 'python', 'python2.7', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'python-numpy', 'python3-six', 'python3-minimal', 'libnghttp2-14:amd64', 'python-cycler', 'libmpdec2:amd64', 'readline-common', 'python-dateutil', 'python-decorator', 'mime-support', 'python3.7-minimal', 'python-minimal', 'python-kiwisolver', 'libpython-stdlib:amd64', 'libpython2.7-stdlib:amd64', 'libjs-jquery-ui', 'libldap-common', 'python-pkg-resources', 'python-subprocess32', 'libsasl2-2:amd64', 'libk5crypto3:amd64', 'python3.7', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'python2.7-minimal', 'python-matplotlib2-data', 'python3-scipy', 'libpython2-stdlib:amd64', 'python3-numpy', 'python3', 'python-backports.functools-lru-cache'] 0m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--purge', 'arden'] 0m59.4s DUMP: dpkg: warning: ignoring request to remove arden which isn't installed 0m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--purge', 'arden'] 0m59.4s INFO: Running scripts post_purge 0m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_purge_exceptions'] 0m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_purge_exceptions'] 0m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--purge', '--pending'] 0m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--purge', '--pending'] 0m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--remove', '--pending'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg', '--remove', '--pending'] 0m59.5s INFO: Running scripts post_test 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_test_exceptions'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'tmp/scripts/post_test_exceptions'] 0m59.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m59.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg-divert', '--list'] 0m59.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'dpkg-divert', '--list'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'clean'] 0m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpfvKRyh', 'apt-get', 'clean'] 0m59.9s DEBUG: Recording chroot state 1m0.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/shm'] 1m0.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/shm'] 1m0.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/console'] 1m0.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/console'] 1m0.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/ptmx'] 1m1.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/ptmx'] 1m1.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/pts'] 1m1.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/dev/pts'] 1m1.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/proc'] 1m1.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpfvKRyh/proc'] 1m1.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 1m1.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpfvKRyh'] 1m1.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpfvKRyh 1m1.1s INFO: PASS: Upgrading between Debian distributions. 1m1.1s INFO: PASS: All tests. 1m1.1s INFO: piuparts run ends. ret=0 End: 2019-09-13 16:39:26 UTC