Start: 2022-02-20 15:33:56 GMT [testing] Package: autodock-test Source: autodocksuite Version: 4.2.6-8 Installed-Size: 12074 Maintainer: Debian Med Packaging Team Architecture: all Suggests: autodock Description: test files for AutoDock Homepage: http://autodock.scripps.edu/ Description-md5: 17207d13a0d0dc51dcec321cc1d8431a Tag: field::biology, field::biology:structural, made-of::TODO, made-of::dictionary, role::TODO, role::app-data, use::TODO, use::checking Section: science Priority: optional Filename: pool/main/a/autodocksuite/autodock-test_4.2.6-8_all.deb Size: 3226756 MD5sum: 678894d133fd8543ca020ff4126465fe SHA256: 2977aa5e0b8a86139a4087ef5f25fe1f37a644d70c04a4d4f454df0ab4dde680 [sid] Package: autodock-test Source: autodocksuite Version: 4.2.6-9 Installed-Size: 12074 Maintainer: Debian Med Packaging Team Architecture: all Suggests: autodock Description: test files for AutoDock Homepage: http://autodock.scripps.edu/ Description-md5: 17207d13a0d0dc51dcec321cc1d8431a Tag: field::biology, field::biology:structural, made-of::TODO, made-of::dictionary, role::TODO, role::app-data, use::TODO, use::checking Section: science Priority: optional Filename: pool/main/a/autodocksuite/autodock-test_4.2.6-9_all.deb Size: 3228224 MD5sum: 8d5cf6bae1c75939c5e5b3155e8c5ee1 SHA256: 41e4eda9230009674fc0d6c7c2a36ef279da46598c79ec7e746c25c700f0dff0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt autodock-test=4.2.6-9 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt autodock-test=4.2.6-9 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1j8_f0wm 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1j8_f0wm 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1j8_f0wm/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'update'] 0m3.9s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [129 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8327 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5715 kB] Fetched 14.2 MB in 2s (9398 kB/s) Reading package lists... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'update'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: init-system-helpers libaudit-common libaudit1 libc-bin libc6 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3804 kB of archives. After this operation, 1008 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 init-system-helpers all 1.62 [48.0 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.33-6 [2842 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.33-6 [846 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.7-1 [16.0 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.7-1 [52.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3804 kB in 0s (54.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6684 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.62_all.deb ... Unpacking init-system-helpers (1.62) over (1.61) ... Setting up init-system-helpers (1.62) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6684 files and directories currently installed.) Preparing to unpack .../libc6_2.33-6_amd64.deb ... Unpacking libc6:amd64 (2.33-6) over (2.33-5) ... Setting up libc6:amd64 (2.33-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6684 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-6_amd64.deb ... Unpacking libc-bin (2.33-6) over (2.33-5) ... Setting up libc-bin (2.33-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6684 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.0.7-1_all.deb ... Unpacking libaudit-common (1:3.0.7-1) over (1:3.0.6-1) ... Setting up libaudit-common (1:3.0.7-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6684 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.7-1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.0.7-1) over (1:3.0.6-1+b1) ... Setting up libaudit1:amd64 (1:3.0.7-1) ... Processing triggers for libc-bin (2.33-6) ... 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s DUMP: 871382488eaf9f57c9109a72f91b090e - 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s INFO: Running scripts post_setup 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_forbid_home'] 0m6.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_forbid_home'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_minimize'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_minimize'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.15 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-16 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.15 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-6 install ok installed libc6:amd64 libc6 2.33-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-16 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 250.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-2 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.11.1+dfsg1-1 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.11.1+dfsg1-1 install ok installed perl-base perl-base 5.34.0-3 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m6.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m6.8s INFO: Running scripts is_testable 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/is_testable_uninstallable'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/is_testable_uninstallable'] 0m6.8s INFO: Running scripts pre_test 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_test_exceptions'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_test_exceptions'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_test_root_password'] 0m6.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_test_root_password'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'show', '--no-all-versions', 'autodock-test'] 0m7.0s DUMP: Package: autodock-test Source: autodocksuite Version: 4.2.6-8 Installed-Size: 12074 Maintainer: Debian Med Packaging Team Architecture: all Suggests: autodock Description-en: test files for AutoDock AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account. . This package contain the test files for the AutoDock program. Description-md5: 17207d13a0d0dc51dcec321cc1d8431a Homepage: http://autodock.scripps.edu/ Tag: field::biology, field::biology:structural, made-of::TODO, made-of::dictionary, role::TODO, role::app-data, use::TODO, use::checking Section: science Priority: optional Filename: pool/main/a/autodocksuite/autodock-test_4.2.6-8_all.deb Size: 3226756 MD5sum: 678894d133fd8543ca020ff4126465fe SHA256: 2977aa5e0b8a86139a4087ef5f25fe1f37a644d70c04a4d4f454df0ab4dde680 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'show', '--no-all-versions', 'autodock-test'] 0m7.0s INFO: apt-cache knows about the following packages: autodock-test 0m7.0s INFO: Running scripts pre_install 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_database-server'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_database-server'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_exceptions'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_exceptions'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_extras'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_extras'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy'] 0m7.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy', 'autodock-test'] 0m7.1s DUMP: autodock-test: Installed: (none) Candidate: 4.2.6-8 Version table: 4.2.6-8 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy', 'autodock-test'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-y', 'install', 'autodock-test'] 0m8.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: autodock The following NEW packages will be installed: autodock-test 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 3227 kB of archives. After this operation, 12.4 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 autodock-test all 4.2.6-8 [3227 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3227 kB in 0s (59.9 MB/s) Selecting previously unselected package autodock-test. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6685 files and directories currently installed.) Preparing to unpack .../autodock-test_4.2.6-8_all.deb ... Unpacking autodock-test (4.2.6-8) ... Setting up autodock-test (4.2.6-8) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-y', 'install', 'autodock-test'] 0m8.1s INFO: Running scripts post_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_install_exceptions'] 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m8.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp1j8_f0wm to sid 0m8.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.4s INFO: Running scripts pre_distupgrade 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'update'] 0m11.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8988 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6734 kB] Fetched 15.9 MB in 2s (7796 kB/s) Reading package lists... 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'update'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-yf', 'dist-upgrade'] 0m11.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: autodock-test debianutils 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3330 kB of archives. After this operation, 12.3 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.7-0.1 [102 kB] Get:2 http://deb.debian.org/debian sid/main amd64 autodock-test all 4.2.6-9 [3228 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3330 kB in 0s (58.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6818 files and directories currently installed.) Preparing to unpack .../debianutils_5.7-0.1_amd64.deb ... Unpacking debianutils (5.7-0.1) over (4.11.2) ... Setting up debianutils (5.7-0.1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6821 files and directories currently installed.) Preparing to unpack .../autodock-test_4.2.6-9_all.deb ... Unpacking autodock-test (4.2.6-9) over (4.2.6-8) ... Setting up autodock-test (4.2.6-9) ... 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-yf', 'dist-upgrade'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.2s DUMP: 79715749be0aab2d27fcddadbfd717dc - 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'show', '--no-all-versions', 'autodock-test'] 0m12.3s DUMP: Package: autodock-test Source: autodocksuite Version: 4.2.6-9 Installed-Size: 12074 Maintainer: Debian Med Packaging Team Architecture: all Suggests: autodock Description-en: test files for AutoDock AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account. . This package contain the test files for the AutoDock program. Description-md5: 17207d13a0d0dc51dcec321cc1d8431a Homepage: http://autodock.scripps.edu/ Tag: field::biology, field::biology:structural, made-of::TODO, made-of::dictionary, role::TODO, role::app-data, use::TODO, use::checking Section: science Priority: optional Filename: pool/main/a/autodocksuite/autodock-test_4.2.6-9_all.deb Size: 3228224 MD5sum: 8d5cf6bae1c75939c5e5b3155e8c5ee1 SHA256: 41e4eda9230009674fc0d6c7c2a36ef279da46598c79ec7e746c25c700f0dff0 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'show', '--no-all-versions', 'autodock-test'] 0m12.3s INFO: apt-cache knows about the following packages: autodock-test 0m12.3s INFO: Running scripts pre_install 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_database-server'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_database-server'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_exceptions'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_exceptions'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_extras'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_extras'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy'] 0m12.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy', 'autodock-test'] 0m12.4s DUMP: autodock-test: Installed: 4.2.6-9 Candidate: 4.2.6-9 Version table: *** 4.2.6-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy', 'autodock-test'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-y', 'install', 'autodock-test'] 0m12.7s DUMP: Reading package lists... Building dependency tree... Reading state information... autodock-test is already the newest version (4.2.6-9). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-y', 'install', 'autodock-test'] 0m12.7s INFO: Running scripts post_install 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_install_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_install_exceptions'] 0m12.7s INFO: Running scripts post_distupgrade 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_exceptions'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_distupgrade_zz_backports'] 0m12.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m13.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m13.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m13.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m13.7s INFO: Running scripts pre_install 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_database-server'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_database-server'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_exceptions'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_exceptions'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_extras'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_extras'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy'] 0m13.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy', 'autodock-test'] 0m13.9s DUMP: autodock-test: Installed: 4.2.6-9 Candidate: 4.2.6-9 Version table: *** 4.2.6-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-cache', 'policy', 'autodock-test'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-y', 'install', 'autodock-test=4.2.6-9'] 0m14.4s DUMP: Reading package lists... Building dependency tree... Reading state information... autodock-test is already the newest version (4.2.6-9). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', '-y', 'install', 'autodock-test=4.2.6-9'] 0m14.4s INFO: Running scripts post_install 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_install_exceptions'] 0m14.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m14.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m15.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', '-ac', '--ignore-obsolete'] 0m16.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', '-ac', '--ignore-obsolete'] 0m16.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.1s DUMP: 0.15.2 0m16.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.1s INFO: Running adequate version 0.15.2 now. 0m16.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'autodock-test'] 0m16.1s DUMP: autodock-test: py-file-not-bytecompiled /usr/share/autodock/Tests/DlgParser.py autodock-test: py-file-not-bytecompiled /usr/share/autodock/Tests/test_autodock4.py 0m16.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'autodock-test'] 0m16.1s ERROR: WARN: Inadequate results from running adequate! autodock-test: py-file-not-bytecompiled /usr/share/autodock/Tests/DlgParser.py autodock-test: py-file-not-bytecompiled /usr/share/autodock/Tests/test_autodock4.py 0m16.1s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 0m16.1s INFO: Running scripts pre_remove 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/pre_remove_exceptions'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m16.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.15 install ok installed autodock-test autodock-test 4.2.6-9 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.3-1+b1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-16 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.62 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.15 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1 install ok installed libblkid1:amd64 libblkid1 2.37.3-1+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-6 install ok installed libc6:amd64 libc6 2.33-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-16 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.3-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.3-1+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.3-1+b1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 250.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-2 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.37.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.11.1+dfsg1-1 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-3+b1 install ok installed mount mount 2.37.3-1+b1 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.11.1+dfsg1-1 install ok installed perl-base perl-base 5.34.0-3 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.3-1+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'remove', 'autodock-test'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autodock-test 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 12.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6821 files and directories currently installed.) Removing autodock-test (4.2.6-9) ... 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'remove', 'autodock-test'] 0m17.4s INFO: Running scripts post_remove 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_remove_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_remove_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg', '--purge', 'autodock-test'] 0m17.4s DUMP: dpkg: warning: ignoring request to remove autodock-test which isn't installed 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg', '--purge', 'autodock-test'] 0m17.4s INFO: Running scripts post_purge 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_purge_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_purge_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg', '--purge', '--pending'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg', '--purge', '--pending'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg', '--remove', '--pending'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg', '--remove', '--pending'] 0m17.4s INFO: Running scripts post_test 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_test_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'tmp/scripts/post_test_exceptions'] 0m17.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m17.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg-divert', '--list'] 0m17.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'dpkg-divert', '--list'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'clean'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm', 'apt-get', 'clean'] 0m17.8s DEBUG: Recording chroot state 0m18.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/shm'] 0m18.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/shm'] 0m18.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/console'] 0m18.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/console'] 0m18.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/ptmx'] 0m18.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/ptmx'] 0m18.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/pts'] 0m18.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/dev/pts'] 0m18.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/proc'] 0m18.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm/proc'] 0m18.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m18.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1j8_f0wm'] 0m18.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1j8_f0wm 0m18.9s INFO: PASS: Upgrading between Debian distributions. 0m18.9s INFO: PASS: All tests. 0m18.9s INFO: piuparts run ends. ret=0 End: 2022-02-20 15:34:15 GMT