Start: 2023-11-24 15:39:48 GMT [testing] Package: bbmap Version: 39.01+dfsg-2 Installed-Size: 9338 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description: BBTools genomic aligner and other tools for short sequences Homepage: https://sourceforge.net/projects/bbmap/ Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.01+dfsg-2_all.deb Size: 8740372 MD5sum: 09840d0b359c1ab877e8d4392eefca87 SHA256: 2b29fb2dddf3ca83965cfc0ea00f33fdf21d544853e32e0d271869825269b2a5 [sid] Package: bbmap Version: 39.06+dfsg-1 Installed-Size: 10553 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description: BBTools genomic aligner and other tools for short sequences Homepage: https://sourceforge.net/projects/bbmap/ Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.06+dfsg-1_all.deb Size: 9925076 MD5sum: fe97f5c69c668b786b7abe6e5f86f996 SHA256: b0b6a5f8ac815dc189f8bffd73a87586458bd21be20b7a71497c42fc9ae879a4 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt bbmap=39.06+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt bbmap=39.06+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-26-amd64 #1 SMP Debian 5.10.197-1 (2023-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpy_w4r83l 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpy_w4r83l 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpy_w4r83l/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'update'] 0m3.4s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'update'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s DUMP: 58258f9b3702140f6ddb34dae593c101 - 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s INFO: Running scripts post_setup 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_forbid_home'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DUMP: install ok installed apt apt 2.7.6 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.2 install ok installed bash bash 5.2.15-2+b6 install ok installed bsdutils bsdutils 1:2.39.2-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.14 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.22.0 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-5 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.6 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libblkid1:amd64 libblkid1 2.39.2-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-12 install ok installed libc6:amd64 libc6 2.37-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-5 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-2 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.4-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.2-4 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-4 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-5 install ok installed libsystemd0:amd64 libsystemd0 254.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20231016-1 install ok installed libudev1:amd64 libudev1 254.5-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20230808-1 install ok installed mount mount 2.39.2-4 install ok installed ncurses-base ncurses-base 6.4+20231016-1 install ok installed ncurses-bin ncurses-bin 6.4+20231016-1 install ok installed passwd passwd 1:4.13+dfsg1-3 install ok installed perl-base perl-base 5.36.0-9 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.08-3 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-10 install ok installed usr-is-merged usr-is-merged 37 install ok installed util-linux util-linux 2.39.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-3 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m5.9s INFO: Running scripts is_testable 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s INFO: Running scripts pre_test 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_test_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_test_root_password'] 0m6.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_test_root_password'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m6.2s DUMP: Package: bbmap Version: 39.01+dfsg-2 Installed-Size: 9338 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description-en: BBTools genomic aligner and other tools for short sequences The BBTools are a collection of small programs to solve recurrent tasks for the creative handling of short biological RNA/DNA sequences. This suite may be best known for its mapper, which is also the name of the project on sourceforge, but several tools have been added over time. All tools are multi-threaded, implemented platform-independently in Java: . BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. . BBNorm: Kmer-based error-correction and normalization tool. . Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. . Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. . BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Homepage: https://sourceforge.net/projects/bbmap/ Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.01+dfsg-2_all.deb Size: 8740372 MD5sum: 09840d0b359c1ab877e8d4392eefca87 SHA256: 2b29fb2dddf3ca83965cfc0ea00f33fdf21d544853e32e0d271869825269b2a5 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m6.2s INFO: apt-cache knows about the following packages: bbmap 0m6.2s INFO: Running scripts pre_install 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy'] 0m6.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.2,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy', 'bbmap'] 0m6.4s DUMP: bbmap: Installed: (none) Candidate: 39.01+dfsg-2 Version table: 39.01+dfsg-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy', 'bbmap'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-y', 'install', 'bbmap'] 0m18.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates ca-certificates-java fontconfig-config fonts-dejavu-core java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmpj-java libnspr4 libnss3 libpcsclite1 libpng16-16 libsqlite3-0 libssl3 openjdk-17-jre-headless openssl Suggested packages: default-jre libasound2-plugins alsa-utils libcommons-io-java-doc cups-common low-memory-monitor krb5-doc krb5-user liblcms2-utils liblog4j1.2-java-doc libmail-java pcscd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic Recommended packages: pigz alsa-ucm-conf alsa-topology-conf dbus libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales The following NEW packages will be installed: bbmap ca-certificates ca-certificates-java fontconfig-config fonts-dejavu-core java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmpj-java libnspr4 libnss3 libpcsclite1 libpng16-16 libsqlite3-0 libssl3 openjdk-17-jre-headless openssl 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 68.2 MB of archives. After this operation, 240 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u1 [2018 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u1 [1420 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libcommons-cli-java all 1.5.0-1 [60.0 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get:6 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libcommons-io-java all 2.11.0-2 [319 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libmpj-java all 0.44+dfsg-4 [447 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230620~deb12u1 [11.6 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get:13 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:20 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u4 [244 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.8+7-1~deb12u1 [43.8 MB] Get:42 http://deb.debian.org/debian bookworm/main amd64 bbmap all 39.01+dfsg-2 [8740 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.2 MB in 2s (38.0 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5198 files and directories currently installed.) Preparing to unpack .../00-libssl3_3.0.11-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u1) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.0.11-1~deb12u1_amd64.deb ... Unpacking openssl (3.0.11-1~deb12u1) ... Selecting previously unselected package ca-certificates. 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Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up java-common (0.74) ... Setting up libcommons-cli-java (1.5.0-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libssl3:amd64 (3.0.11-1~deb12u1) ... Setting up liblog4j1.2-java (1.2.17-11) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libasound2-data (1.2.8-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-10) ... Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up openssl (3.0.11-1~deb12u1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-10) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libavahi-client3:amd64 (0.8-10) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up libmpj-java (0.44+dfsg-4) ... Setting up libcups2:amd64 (2.4.2-3+deb12u4) ... Setting up openjdk-17-jre-headless:amd64 (17.0.8+7-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20230620~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up bbmap (39.01+dfsg-2) ... Processing triggers for libc-bin (2.37-12) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230620~deb12u1) ... done. 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-y', 'install', 'bbmap'] 0m18.9s INFO: Running scripts post_install 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m19.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m19.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpy_w4r83l to sid 0m19.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m19.3s INFO: Running scripts pre_distupgrade 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_exceptions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'update'] 0m23.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9612 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7079 kB] Fetched 16.9 MB in 3s (5028 kB/s) Reading package lists... 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'update'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-yf', 'dist-upgrade'] 0m36.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: fonts-dejavu-mono The following packages will be upgraded: apt bbmap bsdutils ca-certificates-java coreutils diffutils dpkg fontconfig-config fonts-dejavu-core gcc-13-base java-common libapt-pkg6.0 libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblkid1 libbrotli1 libcups2 libdb5.3 libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libgcc-s1 libglib2.0-0 libgpg-error0 libgssapi-krb5-2 libharfbuzz0b libk5crypto3 libkrb5-3 libkrb5support0 liblzma5 libmount1 libnspr4 libnss3 libpcsclite1 libpng16-16 libseccomp2 libsmartcols1 libsqlite3-0 libssl3 libstdc++6 libsystemd0 libtinfo6 libudev1 libuuid1 mawk mount ncurses-base ncurses-bin openjdk-17-jre-headless openssl usr-is-merged util-linux zlib1g 57 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 80.7 MB of archives. After this operation, 2935 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.2-6 [96.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-2+b1 [2948 kB] Get:3 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-6 [40.5 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 13.2.0-6 [57.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 13.2.0-6 [694 kB] Get:7 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.1 [239 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255~rc3-2 [359 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255~rc3-2 [121 kB] Get:10 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3 [87.5 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.7 [946 kB] Get:12 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.1 [1561 kB] Get:13 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20231121-1 [429 kB] Get:14 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.2-6 [1225 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.4-2 [46.8 kB] Get:16 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.7 [1362 kB] Get:17 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20231121-1 [267 kB] Get:18 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.2-6 [143 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.2-6 [159 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [697 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.2-6 [190 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.2-6 [116 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.0.12-2 [2017 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20231121-1 [341 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.2-6 [29.6 kB] Get:27 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 38 [5504 B] Get:28 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20231102-1 [135 kB] Get:29 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20230710 [11.8 kB] Get:30 http://deb.debian.org/debian sid/main amd64 java-common all 0.75 [6640 B] Get:31 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-13 [46.7 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-13 [43.0 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-13 [111 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.14.10-3 [203 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5 [135 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5 [332 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5 [79.6 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5 [32.9 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libcups2 amd64 2.4.7-1 [246 kB] Get:40 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:41 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:42 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.14.2-6 [316 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2 [304 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.40-2 [276 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1 [437 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.14.2-6 [387 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.35-1.1 [108 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.44.0-1 [881 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.94-1 [1369 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libasound2 amd64 1.2.10-1 [369 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libasound2-data all 1.2.10-1 [20.6 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.1-4 [1451 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.0.1-1 [2158 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.0.0-1 [50.0 kB] Get:56 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre-headless amd64 17.0.9+9-2 [43.7 MB] Get:57 http://deb.debian.org/debian sid/main amd64 bbmap all 39.06+dfsg-1 [9925 kB] Get:58 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.0.12-2 [1419 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.7 MB in 3s (30.4 MB/s) (Reading database ... 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Unpacking libkrb5support0:amd64 (1.20.1-5) over (1.20.1-2+deb12u1) ... Preparing to unpack .../11-libcups2_2.4.7-1_amd64.deb ... Unpacking libcups2:amd64 (2.4.7-1) over (2.4.2-3+deb12u4) ... Preparing to unpack .../12-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) over (2.37-6) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../13-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Preparing to unpack .../14-fontconfig-config_2.14.2-6_amd64.deb ... Unpacking fontconfig-config (2.14.2-6) over (2.14.1-4) ... Preparing to unpack .../15-libexpat1_2.5.0-2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2) over (2.5.0-1) ... Preparing to unpack .../16-libbrotli1_1.1.0-2_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2) over (1.0.9-2+b6) ... Preparing to unpack .../17-libpng16-16_1.6.40-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.40-2) over (1.6.39-2) ... 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Preparing to unpack .../26-libharfbuzz0b_8.0.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (8.0.1-1) over (6.0.0+dfsg-3) ... Preparing to unpack .../27-libpcsclite1_2.0.0-1_amd64.deb ... Unpacking libpcsclite1:amd64 (2.0.0-1) over (1.9.9-2) ... Preparing to unpack .../28-openjdk-17-jre-headless_17.0.9+9-2_amd64.deb ... Unpacking openjdk-17-jre-headless:amd64 (17.0.9+9-2) over (17.0.8+7-1~deb12u1) ... Preparing to unpack .../29-bbmap_39.06+dfsg-1_all.deb ... Unpacking bbmap (39.06+dfsg-1) over (39.01+dfsg-2) ... Preparing to unpack .../30-openssl_3.0.12-2_amd64.deb ... Unpacking openssl (3.0.12-2) over (3.0.11-1~deb12u1) ... Setting up libexpat1:amd64 (2.5.0-2) ... Setting up java-common (0.75) ... Setting up libglib2.0-0:amd64 (2.78.1-4) ... No schema files found: doing nothing. Setting up libbrotli1:amd64 (1.1.0-2) ... Setting up libsqlite3-0:amd64 (3.44.0-1) ... Setting up libkrb5support0:amd64 (1.20.1-5) ... Setting up libasound2-data (1.2.10-1) ... Setting up libnspr4:amd64 (2:4.35-1.1) ... Setting up libavahi-common-data:amd64 (0.8-13) ... Setting up libdbus-1-3:amd64 (1.14.10-3) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:amd64 (1.6.40-2) ... Setting up fonts-dejavu-core (2.37-8) ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-lgc-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/20-unhint-small-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/57-dejavu-sans-mono.conf ... Removing obsolete conffile /etc/fonts/conf.avail/58-dejavu-lgc-sans-mono.conf ... Setting up libpcsclite1:amd64 (2.0.0-1) ... Setting up libk5crypto3:amd64 (1.20.1-5) ... Setting up mount (2.39.2-6) ... Setting up libasound2:amd64 (1.2.10-1) ... Setting up mawk (1.3.4.20231102-1) ... Setting up libkrb5-3:amd64 (1.20.1-5) ... Setting up ca-certificates-java (20230710) ... done. Setting up openssl (3.0.12-2) ... Setting up fontconfig-config (2.14.2-6) ... Setting up libavahi-common3:amd64 (0.8-13) ... Setting up libnss3:amd64 (2:3.94-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5) ... Setting up libharfbuzz0b:amd64 (8.0.1-1) ... Setting up libfontconfig1:amd64 (2.14.2-6) ... Setting up libavahi-client3:amd64 (0.8-13) ... Setting up libcups2:amd64 (2.4.7-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.9+9-2) ... Installing new version of config file /etc/java-17-openjdk/security/public_suffix_list.dat ... Processing triggers for libc-bin (2.37-12) ... Processing triggers for ca-certificates-java (20230710) ... done. Setting up bbmap (39.06+dfsg-1) ... 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-yf', 'dist-upgrade'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m38.0s DUMP: ab75c944d67fe1ef3c0d0ee3b62dc8d8 - 0m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m38.3s DUMP: Package: bbmap Version: 39.06+dfsg-1 Installed-Size: 10553 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description-en: BBTools genomic aligner and other tools for short sequences The BBTools are a collection of small programs to solve recurrent tasks for the creative handling of short biological RNA/DNA sequences. This suite may be best known for its mapper, which is also the name of the project on sourceforge, but several tools have been added over time. All tools are multi-threaded, implemented platform-independently in Java: . BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. . BBNorm: Kmer-based error-correction and normalization tool. . Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. . Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. . BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Homepage: https://sourceforge.net/projects/bbmap/ Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.06+dfsg-1_all.deb Size: 9925076 MD5sum: fe97f5c69c668b786b7abe6e5f86f996 SHA256: b0b6a5f8ac815dc189f8bffd73a87586458bd21be20b7a71497c42fc9ae879a4 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m38.3s INFO: apt-cache knows about the following packages: bbmap 0m38.3s INFO: Running scripts pre_install 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_database-server'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_database-server'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_exceptions'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_exceptions'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_extras'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_extras'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy'] 0m38.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy', 'bbmap'] 0m38.4s DUMP: bbmap: Installed: 39.06+dfsg-1 Candidate: 39.06+dfsg-1 Version table: *** 39.06+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy', 'bbmap'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-y', 'install', 'bbmap'] 0m39.1s DUMP: Reading package lists... Building dependency tree... Reading state information... bbmap is already the newest version (39.06+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-y', 'install', 'bbmap'] 0m39.1s INFO: Running scripts post_install 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_install_exceptions'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_install_exceptions'] 0m39.1s INFO: Running scripts post_distupgrade 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_exceptions'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_exceptions'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_zz_backports'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_distupgrade_zz_backports'] 0m39.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m39.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m39.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m39.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m39.8s INFO: Running scripts pre_install 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_database-server'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_database-server'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_exceptions'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_exceptions'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_extras'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_extras'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy'] 0m39.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy', 'bbmap'] 0m40.0s DUMP: bbmap: Installed: 39.06+dfsg-1 Candidate: 39.06+dfsg-1 Version table: *** 39.06+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-cache', 'policy', 'bbmap'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-y', 'install', 'bbmap=39.06+dfsg-1'] 0m40.7s DUMP: Reading package lists... Building dependency tree... Reading state information... bbmap is already the newest version (39.06+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', '-y', 'install', 'bbmap=39.06+dfsg-1'] 0m40.7s INFO: Running scripts post_install 0m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_install_exceptions'] 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_install_exceptions'] 0m40.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m41.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m41.1s INFO: /bin converted to /usr/bin by /usr merge 0m41.1s INFO: /lib converted to /usr/lib by /usr merge 0m41.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m41.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m41.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m41.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m41.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m41.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m41.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m41.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m41.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m41.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m41.1s INFO: /sbin converted to /usr/sbin by /usr merge 0m41.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', '-ac', '--ignore-obsolete'] 0m42.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', '-ac', '--ignore-obsolete'] 0m42.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.7s DUMP: 0.15.6 0m42.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.7s INFO: Running adequate version 0.15.6 now. 0m42.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'bbmap'] 0m42.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'bbmap'] 0m42.9s INFO: Running scripts pre_remove 0m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_exceptions'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/pre_remove_exceptions'] 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.9s DUMP: install ok installed apt apt 2.7.7 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.2 install ok installed bash bash 5.2.15-2+b6 install ok installed bbmap bbmap 39.06+dfsg-1 install ok installed bsdutils bsdutils 1:2.39.2-6 install ok installed ca-certificates ca-certificates 20230311 install ok installed ca-certificates-java ca-certificates-java 20230710 install ok installed coreutils coreutils 9.4-2+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.14 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.1 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.14.2-6 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-6 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed java-common java-common 0.75 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapache-pom-java libapache-pom-java 29-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.7 install ok installed libasound2:amd64 libasound2 1.2.10-1 install ok installed libasound2-data libasound2-data 1.2.10-1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-13 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-13 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-13 install ok installed libblkid1:amd64 libblkid1 2.39.2-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-12 install ok installed libc6:amd64 libc6 2.37-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcommons-cli-java libcommons-cli-java 1.5.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.15-1 install ok installed libcommons-io-java libcommons-io-java 2.11.0-2 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libcups2:amd64 libcups2 2.4.7-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-3 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libexpat1:amd64 libexpat1 2.5.0-2 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.2-6 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.1-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.0.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.2-6 install ok installed libmpj-java libmpj-java 0.44+dfsg-4 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnspr4:amd64 libnspr4 2:4.35-1.1 install ok installed libnss3:amd64 libnss3 2:3.94-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpcsclite1:amd64 libpcsclite1 2.0.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.40-2 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-2 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.44.0-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.0.12-2 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 255~rc3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20231121-1 install ok installed libudev1:amd64 libudev1 255~rc3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20231102-1 install ok installed mount mount 2.39.2-6 install ok installed ncurses-base ncurses-base 6.4+20231121-1 install ok installed ncurses-bin ncurses-bin 6.4+20231121-1 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.9+9-2 install ok installed openssl openssl 3.0.12-2 install ok installed passwd passwd 1:4.13+dfsg1-3 install ok installed perl-base perl-base 5.36.0-9 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.08-3 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-10 install ok installed usr-is-merged usr-is-merged 38 install ok installed util-linux util-linux 2.39.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbrotli1:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libglib2.0-0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'bbmap'] 0m46.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bbmap ca-certificates ca-certificates-java fontconfig-config fonts-dejavu-core fonts-dejavu-mono java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblog4j1.2-java libmpj-java libnspr4 libnss3 libpcsclite1 libpng16-16 libsqlite3-0 openjdk-17-jre-headless openssl 0 upgraded, 0 newly installed, 42 to remove and 0 not upgraded. After this operation, 237 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6919 files and directories currently installed.) Removing bbmap (39.06+dfsg-1) ... Removing openjdk-17-jre-headless:amd64 (17.0.9+9-2) ... Removing ca-certificates-java (20230710) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.14.2-6) ... Removing fontconfig-config (2.14.2-6) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing java-common (0.75) ... Removing libmpj-java (0.44+dfsg-4) ... Removing libcommons-codec-java (1.15-1) ... Removing libcommons-io-java (2.11.0-2) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (29-2) ... Removing libasound2:amd64 (1.2.10-1) ... Removing libasound2-data (1.2.10-1) ... Removing libcups2:amd64 (2.4.7-1) ... Removing libavahi-client3:amd64 (0.8-13) ... Removing libavahi-common3:amd64 (0.8-13) ... Removing libavahi-common-data:amd64 (0.8-13) ... Removing libharfbuzz0b:amd64 (8.0.1-1) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2) ... Removing libcommons-cli-java (1.5.0-1) ... Removing libdbus-1-3:amd64 (1.14.10-3) ... Removing libexpat1:amd64 (2.5.0-2) ... Removing libglib2.0-0:amd64 (2.78.1-4) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing libkrb5-3:amd64 (1.20.1-5) ... Removing libk5crypto3:amd64 (1.20.1-5) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-5) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing liblog4j1.2-java (1.2.17-11) ... Removing libnss3:amd64 (2:3.94-1) ... Removing libnspr4:amd64 (2:4.35-1.1) ... Removing libpcsclite1:amd64 (2.0.0-1) ... Removing libpng16-16:amd64 (1.6.40-2) ... Removing libsqlite3-0:amd64 (3.44.0-1) ... Removing openssl (3.0.12-2) ... Processing triggers for libc-bin (2.37-12) ... 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbrotli1:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libglib2.0-0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'bbmap'] 0m46.5s INFO: Running scripts post_remove 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_remove_exceptions'] 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_remove_exceptions'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbrotli1:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libglib2.0-0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl'] 0m46.9s DUMP: (Reading database ... 5274 files and directories currently installed.) Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20230710) ... Purging configuration files for fontconfig-config (2.14.2-6) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for java-common (0.75) ... dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.1-4) ... dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed Purging configuration files for libmpj-java (0.44+dfsg-4) ... dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.9+9-2) ... Purging configuration files for openssl (3.0.12-2) ... 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbrotli1:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libglib2.0-0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libpng16-16:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl'] 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--purge', 'bbmap'] 0m47.0s DUMP: dpkg: warning: ignoring request to remove bbmap which isn't installed 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--purge', 'bbmap'] 0m47.0s INFO: Running scripts post_purge 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_purge_exceptions'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_purge_exceptions'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--purge', '--pending'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--purge', '--pending'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--remove', '--pending'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg', '--remove', '--pending'] 0m47.0s INFO: Running scripts post_test 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_test_exceptions'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'tmp/scripts/post_test_exceptions'] 0m47.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m47.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg-divert', '--list'] 0m47.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'dpkg-divert', '--list'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'clean'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l', 'apt-get', 'clean'] 0m47.4s DEBUG: Recording chroot state 0m48.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/shm'] 0m48.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/shm'] 0m48.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/console'] 0m48.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/console'] 0m48.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/ptmx'] 0m48.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/ptmx'] 0m48.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/pts'] 0m48.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/dev/pts'] 0m48.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/proc'] 0m48.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l/proc'] 0m48.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m48.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpy_w4r83l'] 0m48.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpy_w4r83l 0m48.5s INFO: PASS: Upgrading between Debian distributions. 0m48.5s INFO: PASS: All tests. 0m48.5s INFO: piuparts run ends. ret=0 End: 2023-11-24 15:40:37 GMT