Start: 2025-02-14 03:19:29 GMT [testing] Package: bbmap Version: 39.13+dfsg-1 Installed-Size: 10963 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description: BBTools genomic aligner and other tools for short sequences Homepage: https://sourceforge.net/projects/bbmap/ Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.13+dfsg-1_all.deb Size: 10296636 MD5sum: 80722ba0e7d11efe05fe0a8faaba4a6f SHA256: 71de308fbd70c56353fd86bcf5e97279b6854e7600503dde08d7f2de75307106 [sid] Package: bbmap Version: 39.15+dfsg-1 Installed-Size: 10992 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description: BBTools genomic aligner and other tools for short sequences Homepage: https://sourceforge.net/projects/bbmap/ Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.15+dfsg-1_all.deb Size: 10322096 MD5sum: 477c95e6acb6bf31834a62dbe915bf6e SHA256: 8d6c7105d0f71519fae35e73b1f68af14fcd3dd9adf95890754820fb1cd47e45 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt bbmap=39.15+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt bbmap=39.15+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpj162fec0 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpj162fec0 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj162fec0', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj162fec0', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj162fec0/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj162fec0/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/shm'] 0m0.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpj162fec0/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'update'] 0m3.0s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9437 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6321 kB] Fetched 15.9 MB in 2s (10.1 MB/s) Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt bsdutils dpkg gcc-14-base libapt-pkg6.0t64 libblkid1 libgcc-s1 libmount1 libsemanage2 libsmartcols1 libstdc++6 libtinfo6 libuuid1 login mount ncurses-base ncurses-bin sqv util-linux 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8812 kB of archives. After this operation, 39.9 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.4-3 [106 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-16 [48.9 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-16 [72.8 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-16 [713 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.28 [1119 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.15 [1537 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5+20250125-2 [438 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.4-3 [36.3 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.4-3 [169 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.4-3 [200 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.4-3 [140 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.4-3 [1214 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.4-3 [155 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 sqv amd64 1.2.1-6+b1 [623 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.28 [1440 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5+20250125-2 [273 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.16.0-2+really2.40.4-3 [88.5 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5+20250125-2 [348 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.7-2.1+b1 [91.9 kB] Fetched 8812 kB in 0s (74.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.4-3_amd64.deb ... Unpacking bsdutils (1:2.40.4-3) over (1:2.40.4-2) ... Setting up bsdutils (1:2.40.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-16_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-16) over (14.2.0-12) ... Setting up gcc-14-base:amd64 (14.2.0-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-16_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-16) over (14.2.0-12) ... Setting up libgcc-s1:amd64 (14.2.0-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-16_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-16) over (14.2.0-12) ... Setting up libstdc++6:amd64 (14.2.0-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.28_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.28) over (2.9.27) ... Setting up libapt-pkg6.0t64:amd64 (2.9.28) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.15_amd64.deb ... Unpacking dpkg (1.22.15) over (1.22.14) ... Setting up dpkg (1.22.15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5+20250125-2_amd64.deb ... Unpacking ncurses-bin (6.5+20250125-2) over (6.5-2+b1) ... Setting up ncurses-bin (6.5+20250125-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.4-3_amd64.deb ... Unpacking libuuid1:amd64 (2.40.4-3) over (2.40.4-2) ... Setting up libuuid1:amd64 (2.40.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.4-3_amd64.deb ... Unpacking libblkid1:amd64 (2.40.4-3) over (2.40.4-2) ... Setting up libblkid1:amd64 (2.40.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.4-3_amd64.deb ... Unpacking libmount1:amd64 (2.40.4-3) over (2.40.4-2) ... Setting up libmount1:amd64 (2.40.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.4-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.4-3) over (2.40.4-2) ... Setting up libsmartcols1:amd64 (2.40.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.4-3_amd64.deb ... Unpacking util-linux (2.40.4-3) over (2.40.4-2) ... Setting up util-linux (2.40.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../mount_2.40.4-3_amd64.deb ... Unpacking mount (2.40.4-3) over (2.40.4-2) ... Preparing to unpack .../sqv_1.2.1-6+b1_amd64.deb ... Unpacking sqv (1.2.1-6+b1) over (1.2.1-5) ... Setting up sqv (1.2.1-6+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.28_amd64.deb ... Unpacking apt (2.9.28) over (2.9.27) ... Setting up apt (2.9.28) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20250125-2_all.deb ... Unpacking ncurses-base (6.5+20250125-2) over (6.5-2) ... Setting up ncurses-base (6.5+20250125-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5024 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.4-3_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.4-3) over (1:4.16.0-2+really2.40.4-2) ... Preparing to unpack .../libtinfo6_6.5+20250125-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20250125-2) over (6.5-2+b1) ... Setting up libtinfo6:amd64 (6.5+20250125-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.7-2.1+b1_amd64.deb ... Unpacking libsemanage2:amd64 (3.7-2.1+b1) over (3.7-2.1) ... Setting up mount (2.40.4-3) ... Setting up libsemanage2:amd64 (3.7-2.1+b1) ... Setting up login (1:4.16.0-2+really2.40.4-3) ... Processing triggers for libc-bin (2.40-6) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s DUMP: 31c62cd9196d830151bfbc772ca0089f - 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s INFO: Running scripts post_setup 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_dummy_users'] 0m8.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_dummy_users'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_forbid_home'] 0m8.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_forbid_home'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_minimize'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_setup_zz_backports'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DUMP: install ok installed apt apt 2.9.28 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-3 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-16 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.28 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-16 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-2 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-2 install ok installed libpam-runtime libpam-runtime 1.7.0-2 install ok installed libpam0g:amd64 libpam0g 1.7.0-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3.1 install ok installed libsemanage-common libsemanage-common 3.7-2.1 install ok installed libsemanage2:amd64 libsemanage2 3.7-2.1+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-3 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-16 install ok installed libsystemd0:amd64 libsystemd0 257.2-3 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250125-2 install ok installed libudev1:amd64 libudev1 257.2-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-3 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-3 install ok installed ncurses-base ncurses-base 6.5+20250125-2 install ok installed ncurses-bin ncurses-bin 6.5+20250125-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2024b-6 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m8.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m8.9s INFO: Running scripts is_testable 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/is_testable_uninstallable'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/is_testable_uninstallable'] 0m8.9s INFO: Running scripts pre_test 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_test_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_test_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_test_root_password'] 0m8.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_test_root_password'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m9.2s DUMP: Package: bbmap Version: 39.13+dfsg-1 Installed-Size: 10963 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description-en: BBTools genomic aligner and other tools for short sequences The BBTools are a collection of small programs to solve recurrent tasks for the creative handling of short biological RNA/DNA sequences. This suite may be best known for its mapper, which is also the name of the project on sourceforge, but several tools have been added over time. All tools are multi-threaded, implemented platform-independently in Java: . BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. . BBNorm: Kmer-based error-correction and normalization tool. . Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. . Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. . BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Homepage: https://sourceforge.net/projects/bbmap/ Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.13+dfsg-1_all.deb Size: 10296636 MD5sum: 80722ba0e7d11efe05fe0a8faaba4a6f SHA256: 71de308fbd70c56353fd86bcf5e97279b6854e7600503dde08d7f2de75307106 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m9.2s INFO: apt-cache knows about the following packages: bbmap 0m9.2s INFO: Running scripts pre_install 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_database-server'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_database-server'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_exceptions'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_extras'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_extras'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy'] 0m9.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy', 'bbmap'] 0m9.3s DUMP: bbmap: Installed: (none) Candidate: 39.13+dfsg-1 Version table: 39.13+dfsg-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy', 'bbmap'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-y', 'install', 'bbmap'] 0m17.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates ca-certificates-java java-common libapache-pom-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libjpeg62-turbo liblcms2-2 liblog4j1.2-java libmpj-java libnspr4 libnss3 libpcsclite1 libsqlite3-0 openjdk-17-jre-headless openssl Suggested packages: default-jre liblcms2-utils liblog4j1.2-java-doc libmail-java pcscd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic Recommended packages: pigz libcups2t64 libfontconfig1 libfreetype6 libharfbuzz0b libasound2t64 The following NEW packages will be installed: bbmap ca-certificates ca-certificates-java java-common libapache-pom-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libjpeg62-turbo liblcms2-2 liblog4j1.2-java libmpj-java libnspr4 libnss3 libpcsclite1 libsqlite3-0 openjdk-17-jre-headless openssl 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. Need to get 60.4 MB of archives. After this operation, 218 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.0-2 [1422 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 33-2 [5852 B] Get:5 http://deb.debian.org/debian trixie/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.18.0-1 [509 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libmpj-java all 0.44+dfsg-4 [447 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 java-common all 0.76 [6776 B] Get:12 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libnss3 amd64 2:3.107-1 [1390 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libpcsclite1 amd64 2.3.1-1 [56.0 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jre-headless amd64 17.0.14+7-1 [43.9 MB] Get:19 http://deb.debian.org/debian trixie/main amd64 bbmap all 39.13+dfsg-1 [10.3 MB] Preconfiguring packages ... Fetched 60.4 MB in 0s (160 MB/s) Selecting previously unselected package openssl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5028 files and directories currently installed.) Preparing to unpack .../00-openssl_3.4.0-2_amd64.deb ... Unpacking openssl (3.4.0-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../01-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../02-libcommons-cli-java_1.6.0-1_all.deb ... Unpacking libcommons-cli-java (1.6.0-1) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../03-libapache-pom-java_33-2_all.deb ... Unpacking libapache-pom-java (33-2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../04-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../05-libcommons-codec-java_1.17.1-1_all.deb ... Unpacking libcommons-codec-java (1.17.1-1) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../06-libcommons-io-java_2.18.0-1_all.deb ... Unpacking libcommons-io-java (2.18.0-1) ... Selecting previously unselected package liblog4j1.2-java. Preparing to unpack .../07-liblog4j1.2-java_1.2.17-11_all.deb ... Unpacking liblog4j1.2-java (1.2.17-11) ... Selecting previously unselected package libmpj-java. Preparing to unpack .../08-libmpj-java_0.44+dfsg-4_all.deb ... Unpacking libmpj-java (0.44+dfsg-4) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../09-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package java-common. Preparing to unpack .../10-java-common_0.76_all.deb ... Unpacking java-common (0.76) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../11-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../12-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../13-libnspr4_2%3a4.36-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.36-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../15-libnss3_2%3a3.107-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.107-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../16-libpcsclite1_2.3.1-1_amd64.deb ... Unpacking libpcsclite1:amd64 (2.3.1-1) ... Selecting previously unselected package openjdk-17-jre-headless:amd64. Preparing to unpack .../17-openjdk-17-jre-headless_17.0.14+7-1_amd64.deb ... Unpacking openjdk-17-jre-headless:amd64 (17.0.14+7-1) ... Selecting previously unselected package bbmap. Preparing to unpack .../18-bbmap_39.13+dfsg-1_all.deb ... Unpacking bbmap (39.13+dfsg-1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up java-common (0.76) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up liblog4j1.2-java (1.2.17-11) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libnspr4:amd64 (2:4.36-1) ... Setting up libapache-pom-java (33-2) ... Setting up libpcsclite1:amd64 (2.3.1-1) ... Setting up openssl (3.4.0-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libnss3:amd64 (2:3.107-1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.17.1-1) ... Setting up libcommons-io-java (2.18.0-1) ... Setting up libmpj-java (0.44+dfsg-4) ... Setting up openjdk-17-jre-headless:amd64 (17.0.14+7-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up bbmap (39.13+dfsg-1) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-y', 'install', 'bbmap'] 0m17.6s INFO: Running scripts post_install 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_install_exceptions'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_install_exceptions'] 0m17.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m18.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m18.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpj162fec0 to sid 0m18.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m18.1s INFO: Running scripts pre_distupgrade 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'update'] 0m21.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7366 kB] Fetched 17.7 MB in 2s (8332 kB/s) Reading package lists... 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'update'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-yf', 'dist-upgrade'] 0m24.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bbmap gcc-14-base libgcc-s1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libselinux1 libsepol2 libssl3t64 libstdc++6 libsystemd0 libudev1 openssl openssl-provider-legacy sysvinit-utils tzdata 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 17.3 MB of archives. After this operation, 115 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.14-1 [33.3 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.7.0-3 [248 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.7.0-3 [69.7 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8-3 [84.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 257.3-1 [450 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.7.0-3 [48.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.7.0-3 [177 kB] Get:9 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-17 [49.1 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-17 [713 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-17 [72.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.4.1-1 [302 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.4.1-1 [2304 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 257.3-1 [149 kB] Get:15 http://deb.debian.org/debian sid/main amd64 tzdata all 2025a-2 [259 kB] Get:16 http://deb.debian.org/debian sid/main amd64 bbmap all 39.15+dfsg-1 [10.3 MB] Get:17 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.8-1 [296 kB] Get:18 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.4.1-1 [1427 kB] Preconfiguring packages ... Fetched 17.3 MB in 0s (138 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6348 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.14-1_amd64.deb ... Unpacking sysvinit-utils (3.14-1) over (3.13-1) ... Setting up sysvinit-utils (3.14-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6348 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-17_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-17) over (14.2.0-16) ... Setting up libgcc-s1:amd64 (14.2.0-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6348 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.4.1-1_amd64.deb ... Unpacking openssl-provider-legacy (3.4.1-1) over (3.4.0-2) ... Setting up openssl-provider-legacy (3.4.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6348 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.4.1-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.4.1-1) over (3.4.0-2) ... Setting up libssl3t64:amd64 (3.4.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6348 files and directories currently installed.) Preparing to unpack .../libudev1_257.3-1_amd64.deb ... Unpacking libudev1:amd64 (257.3-1) over (257.2-3) ... Setting up libudev1:amd64 (257.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6348 files and directories currently installed.) Preparing to unpack .../tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) over (2024b-6) ... Preparing to unpack .../bbmap_39.15+dfsg-1_all.deb ... Unpacking bbmap (39.15+dfsg-1) over (39.13+dfsg-1) ... Preparing to unpack .../libsepol2_3.8-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8-1) over (3.7-1) ... Preparing to unpack .../openssl_3.4.1-1_amd64.deb ... Unpacking openssl (3.4.1-1) over (3.4.0-2) ... Setting up bbmap (39.15+dfsg-1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 14 03:19:53 UTC 2025. Universal Time is now: Fri Feb 14 03:19:53 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsepol2:amd64 (3.8-1) ... Setting up openssl (3.4.1-1) ... Processing triggers for libc-bin (2.40-6) ... 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-yf', 'dist-upgrade'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.9s DUMP: 000fbcbea0685813708747dae99adea6 - 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m25.3s DUMP: Package: bbmap Version: 39.15+dfsg-1 Installed-Size: 10992 Maintainer: Debian Med Packaging Team Architecture: all Provides: bbtools Depends: libmpj-java, openjdk-17-jre-headless | java-runtime-headless Recommends: pigz Description-en: BBTools genomic aligner and other tools for short sequences The BBTools are a collection of small programs to solve recurrent tasks for the creative handling of short biological RNA/DNA sequences. This suite may be best known for its mapper, which is also the name of the project on sourceforge, but several tools have been added over time. All tools are multi-threaded, implemented platform-independently in Java: . BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. . BBNorm: Kmer-based error-correction and normalization tool. . Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. . Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. . BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. Description-md5: 11554aad63e51af31dbc4fe8fe6f1828 Homepage: https://sourceforge.net/projects/bbmap/ Section: science Priority: optional Filename: pool/main/b/bbmap/bbmap_39.15+dfsg-1_all.deb Size: 10322096 MD5sum: 477c95e6acb6bf31834a62dbe915bf6e SHA256: 8d6c7105d0f71519fae35e73b1f68af14fcd3dd9adf95890754820fb1cd47e45 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'show', '--no-all-versions', 'bbmap'] 0m25.3s INFO: apt-cache knows about the following packages: bbmap 0m25.3s INFO: Running scripts pre_install 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_database-server'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_database-server'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_exceptions'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_extras'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_extras'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy'] 0m25.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy', 'bbmap'] 0m25.4s DUMP: bbmap: Installed: 39.15+dfsg-1 Candidate: 39.15+dfsg-1 Version table: *** 39.15+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy', 'bbmap'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-y', 'install', 'bbmap'] 0m26.1s DUMP: Reading package lists... Building dependency tree... Reading state information... bbmap is already the newest version (39.15+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-y', 'install', 'bbmap'] 0m26.1s INFO: Running scripts post_install 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_install_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_install_exceptions'] 0m26.1s INFO: Running scripts post_distupgrade 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m26.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m26.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m27.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m27.1s INFO: Running scripts pre_install 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_extras'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_extras'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy'] 0m27.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy', 'bbmap'] 0m27.2s DUMP: bbmap: Installed: 39.15+dfsg-1 Candidate: 39.15+dfsg-1 Version table: *** 39.15+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-cache', 'policy', 'bbmap'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-y', 'install', 'bbmap=39.15+dfsg-1'] 0m27.8s DUMP: Reading package lists... Building dependency tree... Reading state information... bbmap is already the newest version (39.15+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', '-y', 'install', 'bbmap=39.15+dfsg-1'] 0m27.8s INFO: Running scripts post_install 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_install_exceptions'] 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_install_exceptions'] 0m27.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m28.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m28.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpj162fec0', '-ac', '--ignore-obsolete'] 0m29.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpj162fec0', '-ac', '--ignore-obsolete'] 0m29.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.7s DUMP: 0.15.6 0m29.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.7s INFO: Running adequate version 0.15.6 now. 0m29.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'bbmap'] 0m29.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'bbmap'] 0m29.8s INFO: Running scripts pre_remove 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_exceptions'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/pre_remove_exceptions'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.6s DUMP: install ok installed apt apt 2.9.28 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bbmap bbmap 39.15+dfsg-1 install ok installed bsdutils bsdutils 1:2.40.4-3 install ok installed ca-certificates ca-certificates 20241223 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-17 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed java-common java-common 0.76 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.28 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcommons-cli-java libcommons-cli-java 1.6.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.17.1-1 install ok installed libcommons-io-java libcommons-io-java 2.18.0-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-17 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-3 install ok installed libmpj-java libmpj-java 0.44+dfsg-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnspr4:amd64 libnspr4 2:4.36-1 install ok installed libnss3:amd64 libnss3 2:3.107-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpcsclite1:amd64 libpcsclite1 2.3.1-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.8-3 install ok installed libsemanage-common libsemanage-common 3.7-2.1 install ok installed libsemanage2:amd64 libsemanage2 3.7-2.1+b1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-17 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250125-2 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-3 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-3 install ok installed ncurses-base ncurses-base 6.5+20250125-2 install ok installed ncurses-bin ncurses-bin 6.5+20250125-2 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.14+7-1 install ok installed openssl openssl 3.4.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'java-common', 'libapache-pom-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libjpeg62-turbo:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'bbmap'] 0m32.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bbmap ca-certificates ca-certificates-java java-common libapache-pom-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libjpeg62-turbo liblcms2-2 liblog4j1.2-java libmpj-java libnspr4 libnss3 libpcsclite1 libsqlite3-0 openjdk-17-jre-headless openssl 0 upgraded, 0 newly installed, 19 to remove and 0 not upgraded. After this operation, 218 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6349 files and directories currently installed.) Removing bbmap (39.15+dfsg-1) ... Removing openjdk-17-jre-headless:amd64 (17.0.14+7-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing java-common (0.76) ... Removing libmpj-java (0.44+dfsg-4) ... Removing libcommons-codec-java (1.17.1-1) ... Removing libcommons-io-java (2.18.0-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Removing libcommons-cli-java (1.6.0-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing liblog4j1.2-java (1.2.17-11) ... Removing libnss3:amd64 (2:3.107-1) ... Removing libnspr4:amd64 (2:4.36-1) ... Removing libpcsclite1:amd64 (2.3.1-1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing openssl (3.4.1-1) ... Processing triggers for libc-bin (2.40-6) ... 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'remove', 'ca-certificates', 'ca-certificates-java', 'java-common', 'libapache-pom-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libjpeg62-turbo:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'bbmap'] 0m32.2s INFO: Running scripts post_remove 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_remove_exceptions'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_remove_exceptions'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'java-common', 'libapache-pom-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libjpeg62-turbo:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl'] 0m32.4s DUMP: (Reading database ... 5070 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... Purging configuration files for java-common (0.76) ... dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed Purging configuration files for libmpj-java (0.44+dfsg-4) ... dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.14+7-1) ... Purging configuration files for openssl (3.4.1-1) ... 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--purge', 'ca-certificates', 'ca-certificates-java', 'java-common', 'libapache-pom-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libjpeg62-turbo:amd64', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libnspr4:amd64', 'libnss3:amd64', 'libpcsclite1:amd64', 'libsqlite3-0:amd64', 'openjdk-17-jre-headless:amd64', 'openssl'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--purge', 'bbmap'] 0m32.4s DUMP: dpkg: warning: ignoring request to remove bbmap which isn't installed 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--purge', 'bbmap'] 0m32.4s INFO: Running scripts post_purge 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_purge_exceptions'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_purge_exceptions'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--purge', '--pending'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--purge', '--pending'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--remove', '--pending'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg', '--remove', '--pending'] 0m32.5s INFO: Running scripts post_test 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_test_exceptions'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'tmp/scripts/post_test_exceptions'] 0m32.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m32.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg-divert', '--list'] 0m32.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'dpkg-divert', '--list'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'clean'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj162fec0', 'apt-get', 'clean'] 0m32.9s DEBUG: Recording chroot state 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/shm'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/shm'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/console'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/console'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/ptmx'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/ptmx'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/pts'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/dev/pts'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/proc'] 0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj162fec0/proc'] 0m34.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m34.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj162fec0'] 0m34.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpj162fec0 0m34.5s INFO: PASS: Upgrading between Debian distributions. 0m34.5s INFO: PASS: All tests. 0m34.5s INFO: piuparts run ends. ret=0 End: 2025-02-14 03:20:04 GMT