Start: 2021-08-15 18:24:01 GMT [testing] Package: bioperl Version: 1.7.7-2 Installed-Size: 685 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbio-perl-perl (= 1.7.7-2), perl:any, libtest-most-perl Recommends: bioperl-run, perl-doc, libhttp-message-perl, libwww-perl, libcache-cache-perl, libbio-perl-run-perl, libdbi-perl, libgd-gd2-perl, libapache-dbi-perl, liburi-perl, libxml-simple-perl, libyaml-perl, libace-perl, liblist-moreutils-perl, libxml-twig-perl, libset-scalar-perl Suggests: groff-base Description: Perl tools for computational molecular biology Homepage: http://www.bioperl.org/ Description-md5: 499a31b1d7a9f73ed26eb29f5425ebf8 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/b/bioperl/bioperl_1.7.7-2_all.deb Size: 245928 MD5sum: de0ef89e999e55f66253bb6c08568260 SHA256: 8f6fb69449587d5d2b667137d0a46d6df07e5e7d36e66717d8ade3f9f692d4c3 [sid] Package: bioperl Version: 1.7.8-1 Installed-Size: 685 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbio-perl-perl (= 1.7.8-1), perl:any, libtest-most-perl Recommends: bioperl-run, perl-doc, libhttp-message-perl, libwww-perl, libcache-cache-perl, libbio-perl-run-perl, libdbi-perl, libgd-gd2-perl, libapache-dbi-perl, liburi-perl, libxml-simple-perl, libyaml-perl, libace-perl, liblist-moreutils-perl, libxml-twig-perl, libset-scalar-perl Suggests: groff-base Description: Perl tools for computational molecular biology Homepage: http://www.bioperl.org/ Description-md5: 499a31b1d7a9f73ed26eb29f5425ebf8 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/b/bioperl/bioperl_1.7.8-1_all.deb Size: 246472 MD5sum: 9b87ce228d95907c6d20b2fda5a36215 SHA256: 698f12a01e7176edb102e7b376fc5301d129a389bea64467358fe6121206c433 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt bioperl=1.7.8-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.3 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt bioperl=1.7.8-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpnvwj6dr7 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpnvwj6dr7 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpnvwj6dr7/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'update'] 0m2.6s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [113 kB] Fetched 113 kB in 0s (453 kB/s) Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s DUMP: e5893bf5d89f83f99f0dc7018e11583b - 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s INFO: Running scripts post_setup 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+b3 install ok installed bsdutils bsdutils 1:2.36.1-8 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13 install ok installed libc6:amd64 libc6 2.31-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.36.1-8 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9 install ok installed libpam-runtime libpam-runtime 1.4.0-9 install ok installed libpam0g:amd64 libpam0g 1.4.0-9 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1k-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-6 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1 install ok installed libudev1:amd64 libudev1 247.3-6 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.36.1-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m4.8s INFO: Running scripts is_testable 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/is_testable_uninstallable'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/is_testable_uninstallable'] 0m4.8s INFO: Running scripts pre_test 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_test_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_test_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_test_root_password'] 0m4.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_test_root_password'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'show', '--no-all-versions', 'bioperl'] 0m5.2s DUMP: Package: bioperl Version: 1.7.7-2 Installed-Size: 685 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbio-perl-perl (= 1.7.7-2), perl:any, libtest-most-perl Recommends: bioperl-run, perl-doc, libhttp-message-perl, libwww-perl, libcache-cache-perl, libbio-perl-run-perl, libdbi-perl, libgd-gd2-perl, libapache-dbi-perl, liburi-perl, libxml-simple-perl, libyaml-perl, libace-perl, liblist-moreutils-perl, libxml-twig-perl, libset-scalar-perl Suggests: groff-base Description-en: Perl tools for computational molecular biology The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl. . The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian. . The suggested package enhances the manual pages. Description-md5: 499a31b1d7a9f73ed26eb29f5425ebf8 Homepage: http://www.bioperl.org/ Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/b/bioperl/bioperl_1.7.7-2_all.deb Size: 245928 MD5sum: de0ef89e999e55f66253bb6c08568260 SHA256: 8f6fb69449587d5d2b667137d0a46d6df07e5e7d36e66717d8ade3f9f692d4c3 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'show', '--no-all-versions', 'bioperl'] 0m5.2s INFO: apt-cache knows about the following packages: bioperl 0m5.2s INFO: Running scripts pre_install 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy'] 0m5.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.0,o=Debian,a=stable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy', 'bioperl'] 0m5.3s DUMP: bioperl: Installed: (none) Candidate: 1.7.7-2 Version table: 1.7.7-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy', 'bioperl'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-y', 'install', 'bioperl'] 0m8.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libalgorithm-diff-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdevel-stacktrace-perl libexception-class-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.32 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl perl perl-modules-5.32 Suggested packages: groff-base libxml-sax-expatxs-perl gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: bioperl-run perl-doc libhttp-message-perl libwww-perl libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl liburi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl netbase The following NEW packages will be installed: bioperl libalgorithm-diff-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdevel-stacktrace-perl libexception-class-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.32 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl perl perl-modules-5.32 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 58.4 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4 [4117 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.7-2 [2607 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:10 http://deb.debian.org/debian bullseye/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libtest-deep-perl all 1.130-1 [49.3 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libtest-differences-perl all 0.67-1 [18.7 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libsub-uplevel-perl all 0.2800-1.1 [16.5 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libtest-most-perl all 0.37-1 [24.9 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 bioperl all 1.7.7-2 [246 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.0 MB in 0s (89.3 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6655 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.32_5.32.1-4_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../03-libperl5.32_5.32.1-4_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.32.1-4_amd64.deb ... Unpacking perl (5.32.1-4) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../05-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../06-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../07-libbio-perl-perl_1.7.7-2_all.deb ... Unpacking libbio-perl-perl (1.7.7-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../08-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../09-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../10-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../11-libtest-deep-perl_1.130-1_all.deb ... Unpacking libtest-deep-perl (1.130-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../12-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../13-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../14-libtext-diff-perl_1.45-1_all.deb ... Unpacking libtext-diff-perl (1.45-1) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../15-libtest-differences-perl_0.67-1_all.deb ... Unpacking libtest-differences-perl (0.67-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../16-libsub-uplevel-perl_0.2800-1.1_all.deb ... Unpacking libsub-uplevel-perl (0.2800-1.1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../17-libtest-exception-perl_0.43-1_all.deb ... Unpacking libtest-exception-perl (0.43-1) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../18-libtest-warn-perl_0.36-1_all.deb ... Unpacking libtest-warn-perl (0.36-1) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../19-libtest-most-perl_0.37-1_all.deb ... Unpacking libtest-most-perl (0.37-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../20-bioperl_1.7.7-2_all.deb ... Unpacking bioperl (1.7.7-2) ... Setting up perl-modules-5.32 (5.32.1-4) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.1-4) ... Setting up perl (5.32.1-4) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libsub-uplevel-perl (0.2800-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libtest-deep-perl (1.130-1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libbio-perl-perl (1.7.7-2) ... Setting up libtest-differences-perl (0.67-1) ... Setting up libtest-most-perl (0.37-1) ... Setting up bioperl (1.7.7-2) ... Processing triggers for libc-bin (2.31-13) ... 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-y', 'install', 'bioperl'] 0m8.2s INFO: Running scripts post_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_install_exceptions'] 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m8.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m8.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpnvwj6dr7 to sid 0m8.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.6s INFO: Running scripts pre_distupgrade 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'update'] 0m11.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8645 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6513 kB] Fetched 15.3 MB in 2s (6223 kB/s) Reading package lists... 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'update'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-yf', 'dist-upgrade'] 0m15.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bash bioperl dash gcc-9-base libapt-pkg6.0 libbio-perl-perl libcrypt1 libperl5.32 perl perl-base perl-modules-5.32 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 16.1 MB of archives. After this operation, 15.4 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.1-3+b1 [1417 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.11+git20210120+802ebd4-1 [116 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Get:4 http://deb.debian.org/debian sid/main amd64 perl amd64 5.32.1-5 [293 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.32.1-5 [1629 kB] Get:6 http://deb.debian.org/debian sid/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.18-5 [87.6 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.3.8 [1020 kB] Get:9 http://deb.debian.org/debian sid/main amd64 apt amd64 2.3.8 [1498 kB] Get:10 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.4.0-1 [199 kB] Get:11 http://deb.debian.org/debian sid/main amd64 bioperl all 1.7.8-1 [246 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.1 MB in 0s (117 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10102 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.4.0-1_amd64.deb ... Unpacking gcc-9-base:amd64 (9.4.0-1) over (9.3.0-22) ... Preparing to unpack .../bioperl_1.7.8-1_all.deb ... Unpacking bioperl (1.7.8-1) over (1.7.7-2) ... Preparing to unpack .../libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) over (1.7.7-2) ... Setting up perl-modules-5.32 (5.32.1-5) ... Setting up libperl5.32:amd64 (5.32.1-5) ... Setting up gcc-9-base:amd64 (9.4.0-1) ... Setting up perl (5.32.1-5) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up bioperl (1.7.8-1) ... Processing triggers for libc-bin (2.31-13) ... 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-yf', 'dist-upgrade'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.7s DUMP: 7e8b08e710c9a82c7f0b6c66c3d01467 - 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'show', '--no-all-versions', 'bioperl'] 0m16.9s DUMP: Package: bioperl Version: 1.7.8-1 Installed-Size: 685 Maintainer: Debian Med Packaging Team Architecture: all Depends: libbio-perl-perl (= 1.7.8-1), perl:any, libtest-most-perl Recommends: bioperl-run, perl-doc, libhttp-message-perl, libwww-perl, libcache-cache-perl, libbio-perl-run-perl, libdbi-perl, libgd-gd2-perl, libapache-dbi-perl, liburi-perl, libxml-simple-perl, libyaml-perl, libace-perl, liblist-moreutils-perl, libxml-twig-perl, libset-scalar-perl Suggests: groff-base Description-en: Perl tools for computational molecular biology The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl. . The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian. . The suggested package enhances the manual pages. Description-md5: 499a31b1d7a9f73ed26eb29f5425ebf8 Homepage: http://www.bioperl.org/ Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, role::devel-lib, role::shared-lib Section: science Priority: optional Filename: pool/main/b/bioperl/bioperl_1.7.8-1_all.deb Size: 246472 MD5sum: 9b87ce228d95907c6d20b2fda5a36215 SHA256: 698f12a01e7176edb102e7b376fc5301d129a389bea64467358fe6121206c433 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'show', '--no-all-versions', 'bioperl'] 0m16.9s INFO: apt-cache knows about the following packages: bioperl 0m16.9s INFO: Running scripts pre_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_exceptions'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_exceptions'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_extras'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_extras'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy'] 0m17.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy', 'bioperl'] 0m17.1s DUMP: bioperl: Installed: 1.7.8-1 Candidate: 1.7.8-1 Version table: *** 1.7.8-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy', 'bioperl'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-y', 'install', 'bioperl'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... bioperl is already the newest version (1.7.8-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-y', 'install', 'bioperl'] 0m17.4s INFO: Running scripts post_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_install_exceptions'] 0m17.4s INFO: Running scripts post_distupgrade 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m18.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m18.2s INFO: Running scripts pre_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy'] 0m18.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy', 'bioperl'] 0m18.4s DUMP: bioperl: Installed: 1.7.8-1 Candidate: 1.7.8-1 Version table: *** 1.7.8-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-cache', 'policy', 'bioperl'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-y', 'install', 'bioperl=1.7.8-1'] 0m18.7s DUMP: Reading package lists... Building dependency tree... Reading state information... bioperl is already the newest version (1.7.8-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', '-y', 'install', 'bioperl=1.7.8-1'] 0m18.7s INFO: Running scripts post_install 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_install_exceptions'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_install_exceptions'] 0m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m19.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m19.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', '-ac', '--ignore-obsolete'] 0m20.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', '-ac', '--ignore-obsolete'] 0m20.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.3s DUMP: 0.15.2 0m20.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.3s INFO: Running adequate version 0.15.2 now. 0m20.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'bioperl'] 0m20.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'bioperl'] 0m20.5s INFO: Running scripts pre_remove 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/pre_remove_exceptions'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.8 install ok installed base-files base-files 11.1 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-3+b1 install ok installed bioperl bioperl 1.7.8-1 install ok installed bsdutils bsdutils 1:2.36.1-8 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.4.0-1 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.8 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.8-1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13 install ok installed libc6:amd64 libc6 2.31-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-5 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0400-1 install ok installed libexception-class-perl libexception-class-perl 1.44-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libio-string-perl libio-string-perl 1.08-3.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.36.1-8 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9 install ok installed libpam-runtime libpam-runtime 1.4.0-9 install ok installed libpam0g:amd64 libpam0g 1.4.0-9 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1k-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1.1 install ok installed libsystemd0:amd64 libsystemd0 247.3-6 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtest-deep-perl libtest-deep-perl 1.130-1 install ok installed libtest-differences-perl libtest-differences-perl 0.67-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.37-1 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1 install ok installed libudev1:amd64 libudev1 247.3-6 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-5 install ok installed perl-base perl-base 5.32.1-5 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.36.1-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'remove', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libdata-stag-perl', 'libdevel-stacktrace-perl', 'libexception-class-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'perl', 'perl-modules-5.32', 'bioperl'] 0m21.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl libalgorithm-diff-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdevel-stacktrace-perl libexception-class-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.32 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl perl perl-modules-5.32 0 upgraded, 0 newly installed, 21 to remove and 0 not upgraded. After this operation, 58.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10100 files and directories currently installed.) Removing bioperl (1.7.8-1) ... Removing libtest-most-perl (0.37-1) ... Removing libtest-differences-perl (0.67-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libbio-perl-perl (1.7.8-1) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libdata-stag-perl (0.14-2) ... Removing libdevel-stacktrace-perl (2.0400-1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-deep-perl (1.130-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1.1) ... Removing libio-string-perl (1.08-3.1) ... Removing perl (5.32.1-5) ... Removing libperl5.32:amd64 (5.32.1-5) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-5) ... Processing triggers for libc-bin (2.31-13) ... 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'remove', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libdata-stag-perl', 'libdevel-stacktrace-perl', 'libexception-class-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'perl', 'perl-modules-5.32', 'bioperl'] 0m21.8s INFO: Running scripts post_remove 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_remove_exceptions'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_remove_exceptions'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--purge', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libdata-stag-perl', 'libdevel-stacktrace-perl', 'libexception-class-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'perl', 'perl-modules-5.32'] 0m21.9s DUMP: dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed (Reading database ... 6658 files and directories currently installed.) Purging configuration files for perl (5.32.1-5) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--purge', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libdata-stag-perl', 'libdevel-stacktrace-perl', 'libexception-class-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'perl', 'perl-modules-5.32'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--purge', 'bioperl'] 0m21.9s DUMP: dpkg: warning: ignoring request to remove bioperl which isn't installed 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--purge', 'bioperl'] 0m21.9s INFO: Running scripts post_purge 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_purge_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_purge_exceptions'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--purge', '--pending'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--purge', '--pending'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--remove', '--pending'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg', '--remove', '--pending'] 0m21.9s INFO: Running scripts post_test 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_test_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'tmp/scripts/post_test_exceptions'] 0m21.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m22.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg-divert', '--list'] 0m22.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'dpkg-divert', '--list'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'clean'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7', 'apt-get', 'clean'] 0m22.2s DEBUG: Recording chroot state 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/shm'] 0m22.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/shm'] 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/console'] 0m22.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/console'] 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/ptmx'] 0m22.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/ptmx'] 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/pts'] 0m23.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/dev/pts'] 0m23.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/proc'] 0m23.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7/proc'] 0m23.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m23.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnvwj6dr7'] 0m23.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpnvwj6dr7 0m23.1s INFO: PASS: Upgrading between Debian distributions. 0m23.1s INFO: PASS: All tests. 0m23.1s INFO: piuparts run ends. ret=0 End: 2021-08-15 18:24:24 GMT