Start: 2023-01-11 15:15:53 GMT [testing] Package: changeo Version: 1.2.0-1 Installed-Size: 693 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-airr, python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-presto, python3-scipy, python3-yaml, python3:any Recommends: python3-presto (>= 0.6.2) Description: Repertoire clonal assignment toolkit (Python 3) Homepage: https://changeo.readthedocs.io Description-md5: f7df938dee11ca49f4c4cdf5a450df24 Section: science Priority: optional Filename: pool/main/c/changeo/changeo_1.2.0-1_all.deb Size: 107436 MD5sum: 49187b278a70ae8494ae712d5d49371c SHA256: cf6ab263781f264876fcf5b31fe9d7d08c5920c06d2b113ab948b7f60e65585f [sid] Package: changeo Version: 1.3.0-1 Installed-Size: 701 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-airr, python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-presto, python3-scipy, python3-yaml, python3:any Recommends: python3-presto (>= 0.6.2) Description: Repertoire clonal assignment toolkit (Python 3) Homepage: https://changeo.readthedocs.io Description-md5: f7df938dee11ca49f4c4cdf5a450df24 Section: science Priority: optional Filename: pool/main/c/changeo/changeo_1.3.0-1_all.deb Size: 107944 MD5sum: 82cf5803987d3415c6860458241854ef SHA256: 1f71f06d5685bda2d58eb69453c90cf2ec6c22f3beea459080dcb13a86612121 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt changeo=1.3.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt changeo=1.3.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpmlu6dm55 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpmlu6dm55 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpmlu6dm55/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'update'] 0m5.5s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8875 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5991 kB] Fetched 15.0 MB in 3s (5712 kB/s) Reading package lists... 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'update'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-yf', 'dist-upgrade'] 0m6.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: dash dpkg sed 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1924 kB of archives. After this operation, 860 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.17 [1503 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.12-2 [91.8 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1 [329 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1924 kB in 0s (18.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8050 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.17_amd64.deb ... Unpacking dpkg (1.21.17) over (1.21.13) ... Setting up dpkg (1.21.17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8048 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-2_amd64.deb ... Unpacking dash (0.5.12-2) over (0.5.11+git20210903+057cd650a4ed-9) ... Setting up dash (0.5.12-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8048 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_amd64.deb ... Unpacking sed (4.9-1) over (4.8-1) ... Setting up sed (4.9-1) ... Processing triggers for debianutils (5.7-0.4) ... 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-yf', 'dist-upgrade'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.1s DUMP: 712ca22a0baf334e5a4d623bc3218efc - 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.1s INFO: Running scripts post_setup 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_dummy_users'] 0m8.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_dummy_users'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_forbid_home'] 0m8.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_forbid_home'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_minimize'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_minimize'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_zz_backports'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_setup_zz_backports'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.9s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.81 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.17 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-13 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-7 install ok installed libc6:amd64 libc6 2.36-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.266 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-13 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-13 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.4-1 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg2-3 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.4-1 install ok installed ncurses-bin ncurses-bin 6.4-1 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-6 install ok installed perl-base perl-base 5.36.0-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-6 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022g-1 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 0m9.3s INFO: Running scripts is_testable 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s INFO: Running scripts pre_test 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_test_root_password'] 0m9.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_test_root_password'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'show', '--no-all-versions', 'changeo'] 0m9.5s DUMP: Package: changeo Version: 1.2.0-1 Installed-Size: 693 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-airr, python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-presto, python3-scipy, python3-yaml, python3:any Recommends: python3-presto (>= 0.6.2) Description-en: Repertoire clonal assignment toolkit (Python 3) Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences. . Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included. . This package installs the library for Python 3. Description-md5: f7df938dee11ca49f4c4cdf5a450df24 Homepage: https://changeo.readthedocs.io Section: science Priority: optional Filename: pool/main/c/changeo/changeo_1.2.0-1_all.deb Size: 107436 MD5sum: 49187b278a70ae8494ae712d5d49371c SHA256: cf6ab263781f264876fcf5b31fe9d7d08c5920c06d2b113ab948b7f60e65585f 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'show', '--no-all-versions', 'changeo'] 0m9.5s INFO: apt-cache knows about the following packages: changeo 0m9.5s INFO: Running scripts pre_install 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_database-server'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_database-server'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_extras'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_extras'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy'] 0m9.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy', 'changeo'] 0m9.6s DUMP: changeo: Installed: (none) Candidate: 1.2.0-1 Version table: 1.2.0-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy', 'changeo'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-y', 'install', 'changeo'] 1m36.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxsimd-dev libyaml-0-2 linux-libc-dev mailcap media-types mime-support python3 python3-airr python3-all python3-all-dev python3-beniget python3-biopython python3-dateutil python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-ply python3-presto python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-tz python3-yaml python3-yamlordereddictloader python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-12-locales cpp-12-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc low-memory-monitor krb5-doc krb5-user liblcms2-utils libstdc++-12-doc libxsimd-doc python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise gfortran python-numpy-doc python3-pytest python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools python-ply-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc readline-doc sgml-base-doc debhelper Recommended packages: manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2 bzip2 file xz-utils python-biopython-doc ncbi-blast+ python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-olefile The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu changeo cpp cpp-12 fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxsimd-dev libyaml-0-2 linux-libc-dev mailcap media-types mime-support python3 python3-airr python3-all python3-all-dev python3-beniget python3-biopython python3-dateutil python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-ply python3-presto python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-tz python3-yaml python3-yamlordereddictloader python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 148 newly installed, 0 to remove and 0 not upgraded. Need to get 167 MB of archives. After this operation, 879 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.7-1 [2008 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-minimal amd64 3.10.9-1 [784 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.10-minimal amd64 3.10.9-1 [1951 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.10.6-3+b1 [25.9 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-1 [134 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-1 [32.2 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-1 [78.6 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:14 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-1 [331 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [134 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.2 [68.5 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.2 [165 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-1 [838 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-stdlib amd64 3.10.9-1 [1684 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 python3.10 amd64 3.10.9-1 [509 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.10.6-3+b1 [8876 B] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.10.6-3+b1 [25.5 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.1-2 [812 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.1-2 [2065 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.39.90.20221231-1 [2364 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.39.90.20221231-1 [571 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.39.90.20221231-1 [153 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.39.90.20221231-1 [89.9 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.39.90.20221231-1 [811 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.39.90.20221231-1 [2244 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.39.90.20221231-1 [64.6 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-1 [78.2 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 65.5.0-1.1 [278 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.1-2 [1712 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.1-2 [567 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-13 [145 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-13 [793 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.23.5-2 [5706 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7-1 [32.1 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.3.5+dfsg-6 [6092 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.3.5+dfsg-6 [2646 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b1 [159 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 python3-yamlordereddictloader all 0.4.0-1.1 [5040 B] Get:54 http://deb.debian.org/debian bookworm/main amd64 python3-airr all 1.3.1-1 [33.1 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.1 [573 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-6 [6374 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1 [79.5 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1 [40.6 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-13 [116 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1+b1 [169 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-1 [153 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1 [189 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.4-1 [1396 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0-1 [1938 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4 [11.0 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b2 [280 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-6 [302 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.2-2+b2 [96.3 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.2-2+b2 [106 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-1 [117 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1 [475 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4 [1602 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.1.1-3 [664 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-13 [9767 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-2+b1 [7020 B] Get:97 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-13 [41.7 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-13 [26.1 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-13 [9332 B] Get:100 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-13 [2192 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-13 [969 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-13 [2197 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-13 [883 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-13 [2437 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-13 [19.3 MB] Get:106 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-2+b1 [5216 B] Get:107 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-7 [43.6 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.0.12-1 [1695 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-1 [118 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-7 [1899 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-13 [2047 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-13 [10.7 MB] Get:116 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-2+b1 [1356 B] Get:117 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0-18.1 [9509 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:122 http://deb.debian.org/debian bookworm/main amd64 libpython3.10 amd64 3.10.9-1 [1753 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-dev amd64 3.10.9-1 [4124 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.10.6-3+b1 [9152 B] Get:127 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.1-2 [1987 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.1-2 [4740 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.10.6-3+b1 [1080 B] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.10.8-1 [139 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.10.6-3+b1 [1068 B] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3.10-dev amd64 3.10.9-1 [508 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-2 [130 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.10.6-3+b1 [26.0 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.1-2 [615 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.10.6-3+b1 [1080 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-11 [28.6 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.8.1-20 [17.2 MB] Get:147 http://deb.debian.org/debian bookworm/main amd64 python3-presto all 0.7.1-1 [53.5 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 changeo all 1.2.0-1 [107 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 167 MB in 1s (140 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8051 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.7-1) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.9-1_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.9-1_amd64.deb ... Unpacking python3.10-minimal (3.10.9-1) ... Setting up libssl3:amd64 (3.0.7-1) ... Setting up libpython3.10-minimal:amd64 (3.10.9-1) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.10-minimal (3.10.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8368 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.10.6-3+b1_amd64.deb ... Unpacking python3-minimal (3.10.6-3+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.4-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../06-libkrb5support0_1.20.1-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.20.1-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.20.1-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.20.1-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../12-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-1.2_all.deb ... Unpacking readline-common (8.2-1.2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../15-libreadline8_8.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../16-libsqlite3-0_3.40.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-1) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../17-libpython3.10-stdlib_3.10.9-1_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.9-1) ... Selecting previously unselected package python3.10. Preparing to unpack .../18-python3.10_3.10.9-1_amd64.deb ... Unpacking python3.10 (3.10.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../19-libpython3-stdlib_3.10.6-3+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-3+b1) ... Setting up python3-minimal (3.10.6-3+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8893 files and directories currently installed.) Preparing to unpack .../000-python3_3.10.6-3+b1_amd64.deb ... Unpacking python3 (3.10.6-3+b1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../001-libpython3.11-minimal_3.11.1-2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.1-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../002-python3.11-minimal_3.11.1-2_amd64.deb ... Unpacking python3.11-minimal (3.11.1-2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../004-binutils-common_2.39.90.20221231-1_amd64.deb ... Unpacking binutils-common:amd64 (2.39.90.20221231-1) ... Selecting previously unselected package libbinutils:amd64. Preparing to unpack .../005-libbinutils_2.39.90.20221231-1_amd64.deb ... Unpacking libbinutils:amd64 (2.39.90.20221231-1) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../006-libctf-nobfd0_2.39.90.20221231-1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.39.90.20221231-1) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../007-libctf0_2.39.90.20221231-1_amd64.deb ... Unpacking libctf0:amd64 (2.39.90.20221231-1) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../008-libgprofng0_2.39.90.20221231-1_amd64.deb ... Unpacking libgprofng0:amd64 (2.39.90.20221231-1) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../009-libjansson4_2.14-2_amd64.deb ... Unpacking libjansson4:amd64 (2.14-2) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../010-binutils-x86-64-linux-gnu_2.39.90.20221231-1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.39.90.20221231-1) ... Selecting previously unselected package binutils. Preparing to unpack .../011-binutils_2.39.90.20221231-1_amd64.deb ... Unpacking binutils (2.39.90.20221231-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../012-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../013-python3-dateutil_2.8.2-1_all.deb ... Unpacking python3-dateutil (2.8.2-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../014-python3-pkg-resources_65.5.0-1.1_all.deb ... Unpacking python3-pkg-resources (65.5.0-1.1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../015-libpython3.11-stdlib_3.11.1-2_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.1-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../016-python3.11_3.11.1-2_amd64.deb ... Unpacking python3.11 (3.11.1-2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../017-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../018-libquadmath0_12.2.0-13_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-13) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../019-libgfortran5_12.2.0-13_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-13) ... Selecting previously unselected package libopenblas0-pthread:amd64. Preparing to unpack .../020-libopenblas0-pthread_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../021-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../022-python3-numpy_1%3a1.23.5-2_amd64.deb ... Unpacking python3-numpy (1:1.23.5-2) ... Selecting previously unselected package python3-tz. Preparing to unpack .../023-python3-tz_2022.7-1_all.deb ... Unpacking python3-tz (2022.7-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../024-python3-pandas-lib_1.3.5+dfsg-6_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.3.5+dfsg-6) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../025-python3-pandas_1.3.5+dfsg-6_all.deb ... Unpacking python3-pandas (1.3.5+dfsg-6) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../026-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../027-python3-yaml_6.0-3+b1_amd64.deb ... Unpacking python3-yaml (6.0-3+b1) ... Selecting previously unselected package python3-yamlordereddictloader. Preparing to unpack .../028-python3-yamlordereddictloader_0.4.0-1.1_all.deb ... Unpacking python3-yamlordereddictloader (0.4.0-1.1) ... Selecting previously unselected package python3-airr. Preparing to unpack .../029-python3-airr_1.3.1-1_all.deb ... Unpacking python3-airr (1.3.1-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../030-libbrotli1_1.0.9-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b5) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../031-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../032-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../033-libfontenc1_1%3a1.1.4-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../034-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../035-xfonts-encodings_1%3a1.0.4-2.1_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.1) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../036-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../037-fonts-urw-base35_20200910-6_all.deb ... Unpacking fonts-urw-base35 (20200910-6) ... Selecting previously unselected package python3-renderpm:amd64. Preparing to unpack .../038-python3-renderpm_3.6.12-1_amd64.deb ... Unpacking python3-renderpm:amd64 (3.6.12-1) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../039-python3-reportlab-accel_3.6.12-1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.6.12-1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../040-libgomp1_12.2.0-13_amd64.deb ... Unpacking libgomp1:amd64 (12.2.0-13) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../041-libimagequant0_2.17.0-1_amd64.deb ... Unpacking libimagequant0:amd64 (2.17.0-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../042-libjpeg62-turbo_1%3a2.1.2-1+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../043-liblcms2-2_2.14-1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.14-1) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../044-libopenjp2-7_2.5.0-1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../045-libfribidi0_1.0.8-2.1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../046-libglib2.0-0_2.74.4-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.4-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../047-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../048-libharfbuzz0b_6.0.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (6.0.0-1) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../049-libraqm0_0.7.0-4_amd64.deb ... Unpacking libraqm0:amd64 (0.7.0-4) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../050-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../051-libjbig0_2.1-6.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../052-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../053-libwebp7_1.2.2-2+b2_amd64.deb ... Unpacking libwebp7:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../054-libtiff5_4.4.0-6_amd64.deb ... Unpacking libtiff5:amd64 (4.4.0-6) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../055-libwebpdemux2_1.2.2-2+b2_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../056-libwebpmux3_1.2.2-2+b2_amd64.deb ... Unpacking libwebpmux3:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../057-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../058-libbsd0_0.11.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../059-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../060-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../061-python3-pil_9.4.0-1_amd64.deb ... Unpacking python3-pil:amd64 (9.4.0-1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../062-python3-reportlab_3.6.12-1_all.deb ... Unpacking python3-reportlab (3.6.12-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../063-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../064-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../065-python3-biopython_1.80+dfsg-4_amd64.deb ... Unpacking python3-biopython (1.80+dfsg-4) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../066-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package libisl23:amd64. Preparing to unpack .../067-libisl23_0.25-1_amd64.deb ... Unpacking libisl23:amd64 (0.25-1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../068-libmpfr6_4.1.1-3_amd64.deb ... Unpacking libmpfr6:amd64 (4.1.1-3) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../069-libmpc3_1.3.1-1_amd64.deb ... Unpacking libmpc3:amd64 (1.3.1-1) ... Selecting previously unselected package cpp-12. Preparing to unpack .../070-cpp-12_12.2.0-13_amd64.deb ... Unpacking cpp-12 (12.2.0-13) ... Selecting previously unselected package cpp. Preparing to unpack .../071-cpp_4%3a12.2.0-2+b1_amd64.deb ... Unpacking cpp (4:12.2.0-2+b1) ... Selecting previously unselected package libcc1-0:amd64. Preparing to unpack .../072-libcc1-0_12.2.0-13_amd64.deb ... Unpacking libcc1-0:amd64 (12.2.0-13) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../073-libitm1_12.2.0-13_amd64.deb ... Unpacking libitm1:amd64 (12.2.0-13) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../074-libatomic1_12.2.0-13_amd64.deb ... Unpacking libatomic1:amd64 (12.2.0-13) ... Selecting previously unselected package libasan8:amd64. Preparing to unpack .../075-libasan8_12.2.0-13_amd64.deb ... Unpacking libasan8:amd64 (12.2.0-13) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../076-liblsan0_12.2.0-13_amd64.deb ... Unpacking liblsan0:amd64 (12.2.0-13) ... Selecting previously unselected package libtsan2:amd64. Preparing to unpack .../077-libtsan2_12.2.0-13_amd64.deb ... Unpacking libtsan2:amd64 (12.2.0-13) ... Selecting previously unselected package libubsan1:amd64. Preparing to unpack .../078-libubsan1_12.2.0-13_amd64.deb ... Unpacking libubsan1:amd64 (12.2.0-13) ... Selecting previously unselected package libgcc-12-dev:amd64. Preparing to unpack .../079-libgcc-12-dev_12.2.0-13_amd64.deb ... Unpacking libgcc-12-dev:amd64 (12.2.0-13) ... Selecting previously unselected package gcc-12. Preparing to unpack .../080-gcc-12_12.2.0-13_amd64.deb ... Unpacking gcc-12 (12.2.0-13) ... Selecting previously unselected package gcc. Preparing to unpack .../081-gcc_4%3a12.2.0-2+b1_amd64.deb ... Unpacking gcc (4:12.2.0-2+b1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../082-libc-dev-bin_2.36-7_amd64.deb ... Unpacking libc-dev-bin (2.36-7) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../083-linux-libc-dev_6.0.12-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.0.12-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../084-libcrypt-dev_1%3a4.4.33-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.33-1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../085-libtirpc-dev_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../086-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../087-rpcsvc-proto_1.4.3-1_amd64.deb ... Unpacking rpcsvc-proto (1.4.3-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../088-libc6-dev_2.36-7_amd64.deb ... Unpacking libc6-dev:amd64 (2.36-7) ... Selecting previously unselected package libstdc++-12-dev:amd64. Preparing to unpack .../089-libstdc++-12-dev_12.2.0-13_amd64.deb ... Unpacking libstdc++-12-dev:amd64 (12.2.0-13) ... Selecting previously unselected package g++-12. Preparing to unpack .../090-g++-12_12.2.0-13_amd64.deb ... Unpacking g++-12 (12.2.0-13) ... Selecting previously unselected package g++. Preparing to unpack .../091-g++_4%3a12.2.0-2+b1_amd64.deb ... Unpacking g++ (4:12.2.0-2+b1) ... Selecting previously unselected package libopenblas0:amd64. Preparing to unpack .../092-libopenblas0_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-pthread-dev:amd64. Preparing to unpack .../093-libopenblas-pthread-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-dev:amd64. Preparing to unpack .../094-libopenblas-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libboost1.74-dev:amd64. Preparing to unpack .../095-libboost1.74-dev_1.74.0-18.1_amd64.deb ... Unpacking libboost1.74-dev:amd64 (1.74.0-18.1) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../096-libboost-dev_1.74.0.3_amd64.deb ... Unpacking libboost-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libpython3.10:amd64. Preparing to unpack .../097-libpython3.10_3.10.9-1_amd64.deb ... Unpacking libpython3.10:amd64 (3.10.9-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../098-libexpat1-dev_2.5.0-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.5.0-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../099-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.10-dev:amd64. Preparing to unpack .../100-libpython3.10-dev_3.10.9-1_amd64.deb ... Unpacking libpython3.10-dev:amd64 (3.10.9-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../101-libpython3-dev_3.10.6-3+b1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.10.6-3+b1) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../102-libpython3.11_3.11.1-2_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.1-2) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../103-libpython3.11-dev_3.11.1-2_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.1-2) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../104-libpython3-all-dev_3.10.6-3+b1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.10.6-3+b1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../105-python3-lib2to3_3.10.8-1_all.deb ... Unpacking python3-lib2to3 (3.10.8-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../106-python3-distutils_3.10.8-1_all.deb ... Unpacking python3-distutils (3.10.8-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../107-python3-all_3.10.6-3+b1_amd64.deb ... Unpacking python3-all (3.10.6-3+b1) ... Selecting previously unselected package python3.10-dev. Preparing to unpack .../108-python3.10-dev_3.10.9-1_amd64.deb ... Unpacking python3.10-dev (3.10.9-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../109-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../110-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../111-libjs-sphinxdoc_5.3.0-2_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-2) ... Selecting previously unselected package python3-dev. Preparing to unpack .../112-python3-dev_3.10.6-3+b1_amd64.deb ... Unpacking python3-dev (3.10.6-3+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../113-python3.11-dev_3.11.1-2_amd64.deb ... Unpacking python3.11-dev (3.11.1-2) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../114-python3-all-dev_3.10.6-3+b1_amd64.deb ... Unpacking python3-all-dev (3.10.6-3+b1) ... Selecting previously unselected package libxsimd-dev:amd64. Preparing to unpack .../115-libxsimd-dev_8.1.0-7_amd64.deb ... Unpacking libxsimd-dev:amd64 (8.1.0-7) ... Selecting previously unselected package python3-gast. Preparing to unpack .../116-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../117-python3-beniget_0.4.1-3_all.deb ... Unpacking python3-beniget (0.4.1-3) ... Selecting previously unselected package python3-ply. Preparing to unpack .../118-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../119-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../120-liblbfgsb0_3.0+dfsg.3-11_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../121-python3-scipy_1.8.1-20_amd64.deb ... Unpacking python3-scipy (1.8.1-20) ... Selecting previously unselected package python3-presto. Preparing to unpack .../122-python3-presto_0.7.1-1_all.deb ... Unpacking python3-presto (0.7.1-1) ... Selecting previously unselected package changeo. Preparing to unpack .../123-changeo_1.2.0-1_all.deb ... Unpacking changeo (1.2.0-1) ... Setting up media-types (8.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.4-1) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libsqlite3-0:amd64 (3.40.1-1) ... Setting up binutils-common:amd64 (2.39.90.20221231-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.0.12-1) ... Setting up libctf-nobfd0:amd64 (2.39.90.20221231-1) ... Setting up libgomp1:amd64 (12.2.0-13) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Setting up libmpfr6:amd64 (4.1.1-3) ... Setting up xfonts-encodings (1:1.0.4-2.1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-13) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-13) ... Setting up libncursesw6:amd64 (6.4-1) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libgfortran5:amd64 (12.2.0-13) ... Setting up libwebp7:amd64 (1.2.2-2+b2) ... Setting up libubsan1:amd64 (12.2.0-13) ... Setting up libcrypt-dev:amd64 (1:4.4.33-1) ... Setting up libasan8:amd64 (12.2.0-13) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libtiff5:amd64 (4.4.0-6) ... Setting up libpython3.11-minimal:amd64 (3.11.1-2) ... Setting up libtsan2:amd64 (12.2.0-13) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.39.90.20221231-1) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-7) ... Setting up libwebpmux3:amd64 (1.2.2-2+b2) ... Setting up libbsd0:amd64 (0.11.7-1) ... Setting up mailcap (3.70+nmu1) ... Setting up readline-common (8.2-1.2) ... Setting up libcc1-0:amd64 (12.2.0-13) ... Setting up liblsan0:amd64 (12.2.0-13) ... Setting up libitm1:amd64 (12.2.0-13) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.39.90.20221231-1) ... Setting up python3.11-minimal (3.11.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-13) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up mime-support (3.66) ... Setting up libwebpdemux2:amd64 (1.2.2-2+b2) ... Setting up libreadline8:amd64 (8.2-1.2) ... Setting up libgprofng0:amd64 (2.39.90.20221231-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libgcc-12-dev:amd64 (12.2.0-13) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up libjs-sphinxdoc (5.3.0-2) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-2+b1) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:amd64 (6.0.0-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Setting up binutils-x86-64-linux-gnu (2.39.90.20221231-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up binutils (2.39.90.20221231-1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-13) ... Setting up libraqm0:amd64 (0.7.0-4) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.1-2) ... Setting up fonts-urw-base35 (20200910-6) ... Setting up gcc (4:12.2.0-2+b1) ... Setting up libpython3.10-stdlib:amd64 (3.10.9-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-7) ... Setting up libpython3-stdlib:amd64 (3.10.6-3+b1) ... Setting up python3.11 (3.11.1-2) ... Setting up libpython3.10:amd64 (3.10.9-1) ... Setting up python3.10 (3.10.9-1) ... Setting up libpython3.11:amd64 (3.11.1-2) ... Setting up libstdc++-12-dev:amd64 (12.2.0-13) ... Setting up python3 (3.10.6-3+b1) ... Setting up python3-tz (2022.7-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1) ... Setting up python3-decorator (5.1.1-3) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-dateutil (2.8.2-1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up g++-12 (12.2.0-13) ... Setting up python3-pkg-resources (65.5.0-1.1) ... Setting up python3-distutils (3.10.8-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-18.1) ... Setting up python3-renderpm:amd64 (3.6.12-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.10.6-3+b1) ... Setting up python3-yaml (6.0-3+b1) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-yamlordereddictloader (0.4.0-1.1) ... Setting up libpython3.11-dev:amd64 (3.11.1-2) ... Setting up libpython3.10-dev:amd64 (3.10.9-1) ... Setting up python3-numpy (1:1.23.5-2) ... Setting up python3.10-dev (3.10.9-1) ... Setting up g++ (4:12.2.0-2+b1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.10.6-3+b1) ... Setting up python3.11-dev (3.11.1-2) ... Setting up python3-pandas-lib:amd64 (1.3.5+dfsg-6) ... Setting up python3-pandas (1.3.5+dfsg-6) ... Setting up libpython3-all-dev:amd64 (3.10.6-3+b1) ... Setting up python3-dev (3.10.6-3+b1) ... Setting up python3-all-dev (3.10.6-3+b1) ... Setting up python3-airr (1.3.1-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.8.1-20) ... Processing triggers for libc-bin (2.36-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4) ... Setting up python3-presto (0.7.1-1) ... Setting up changeo (1.2.0-1) ... 1m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-y', 'install', 'changeo'] 1m36.0s INFO: Running scripts post_install 1m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_install_exceptions'] 1m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_install_exceptions'] 1m36.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 1m37.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 1m37.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpmlu6dm55 to sid 1m37.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m37.3s INFO: Running scripts pre_distupgrade 1m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_exceptions'] 1m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_exceptions'] 1m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'update'] 1m41.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9394 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6954 kB] Fetched 16.5 MB in 3s (5978 kB/s) Reading package lists... 1m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'update'] 1m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-yf', 'dist-upgrade'] 2m10.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu changeo cpp cpp-12 debconf dpkg findutils g++ g++-12 gcc gcc-12 gcc-12-base libasan8 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libgcc-12-dev libgcc-s1 libgfortran5 libgomp1 libgprofng0 libitm1 liblsan0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpython3-all-dev libpython3-dev libpython3-stdlib libquadmath0 libstdc++-12-dev libstdc++6 libtsan2 libubsan1 linux-libc-dev perl perl-base perl-modules-5.36 python3 python3-all python3-all-dev python3-dev python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources tar tzdata 62 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 94.6 MB of archives. After this operation, 5947 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:2 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.21.18 [1502 kB] Get:3 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-4 [636 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libperl5.36 amd64 5.36.0-7 [4218 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl amd64 5.36.0-7 [239 kB] Get:6 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.36.0-7 [1608 kB] Get:7 http://deb.debian.org/debian sid/main amd64 perl-modules-5.36 all 5.36.0-7 [2815 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.36-8 [1897 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.36-8 [43.8 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.33-2 [89.5 kB] Get:12 http://deb.debian.org/debian sid/main amd64 linux-libc-dev amd64 6.1.4-1 [1709 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.39.90.20230110-1 [812 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.39.90.20230110-1 [89.9 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.39.90.20230110-1 [153 kB] Get:17 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.39.90.20230110-1 [2249 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.39.90.20230110-1 [573 kB] Get:19 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.39.90.20230110-1 [2472 kB] Get:20 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.39.90.20230110-1 [64.7 kB] Get:21 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:26 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:27 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:31 http://deb.debian.org/debian sid/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:32 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:34 http://deb.debian.org/debian sid/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:35 http://deb.debian.org/debian sid/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.36-8 [2747 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.36-8 [605 kB] Get:40 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.82 [121 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-6 [91.7 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-6 [75.5 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-6 [291 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.11.1-1 [1076 B] Get:45 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.11.1-1 [1064 B] Get:46 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.11.1-1 [1072 B] Get:47 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.11.1-1 [8808 B] Get:48 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.11.1-1 [26.0 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.1-1 [25.5 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.1-1 [25.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.1-1 [8580 B] Get:52 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-6 [161 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-1 [261 kB] Get:54 http://deb.debian.org/debian sid/main amd64 tzdata all 2022g-2 [277 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 65.6.3-1 [278 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.1-2 [5966 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 1.5.2+dfsg-5 [6265 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-pandas all 1.5.2+dfsg-5 [2882 kB] Get:59 http://deb.debian.org/debian sid/main amd64 changeo all 1.3.0-1 [108 kB] Get:60 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:61 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:62 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:12.2.0-3 [6836 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 94.6 MB in 1s (77.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37842 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.1_amd64.deb ... Unpacking tar (1.34+dfsg-1.1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37842 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.18_amd64.deb ... Unpacking dpkg (1.21.18) over (1.21.17) ... Setting up dpkg (1.21.18) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37842 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-4_amd64.deb ... Unpacking findutils (4.9.0-4) over (4.9.0-3) ... Setting up findutils (4.9.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37842 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-7_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7) over (5.36.0-6) ... Preparing to unpack .../perl_5.36.0-7_amd64.deb ... Unpacking perl (5.36.0-7) over (5.36.0-6) ... Preparing to unpack .../perl-base_5.36.0-7_amd64.deb ... Unpacking perl-base (5.36.0-7) over (5.36.0-6) ... Setting up perl-base (5.36.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37842 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7) over (5.36.0-6) ... Preparing to unpack .../libcrypt-dev_1%3a4.4.33-2_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.33-2) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.36-8_amd64.deb ... Unpacking libc6-dev:amd64 (2.36-8) over (2.36-7) ... Preparing to unpack .../libc-dev-bin_2.36-8_amd64.deb ... Unpacking libc-dev-bin (2.36-8) over (2.36-7) ... Preparing to unpack .../libcrypt1_1%3a4.4.33-2_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.33-2) over (1:4.4.33-1) ... Setting up libcrypt1:amd64 (1:4.4.33-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37842 files and directories currently installed.) Preparing to unpack .../0-linux-libc-dev_6.1.4-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.1.4-1) over (6.0.12-1) ... Preparing to unpack .../1-libcc1-0_12.2.0-14_amd64.deb ... Unpacking libcc1-0:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../2-libgprofng0_2.39.90.20230110-1_amd64.deb ... Unpacking libgprofng0:amd64 (2.39.90.20230110-1) over (2.39.90.20221231-1) ... Preparing to unpack .../3-libctf0_2.39.90.20230110-1_amd64.deb ... Unpacking libctf0:amd64 (2.39.90.20230110-1) over (2.39.90.20221231-1) ... Preparing to unpack .../4-libctf-nobfd0_2.39.90.20230110-1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.39.90.20230110-1) over (2.39.90.20221231-1) ... Preparing to unpack .../5-binutils-x86-64-linux-gnu_2.39.90.20230110-1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.39.90.20230110-1) over (2.39.90.20221231-1) ... Preparing to unpack .../6-libbinutils_2.39.90.20230110-1_amd64.deb ... Unpacking libbinutils:amd64 (2.39.90.20230110-1) over (2.39.90.20221231-1) ... Preparing to unpack .../7-binutils-common_2.39.90.20230110-1_amd64.deb ... Unpacking binutils-common:amd64 (2.39.90.20230110-1) over (2.39.90.20221231-1) ... Preparing to unpack .../8-binutils_2.39.90.20230110-1_amd64.deb ... Unpacking binutils (2.39.90.20230110-1) over (2.39.90.20221231-1) ... Preparing to unpack .../9-gcc-12-base_12.2.0-14_amd64.deb ... Unpacking gcc-12-base:amd64 (12.2.0-14) over (12.2.0-13) ... Setting up gcc-12-base:amd64 (12.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.2.0-14_amd64.deb ... Unpacking libgcc-s1:amd64 (12.2.0-14) over (12.2.0-13) ... Setting up libgcc-s1:amd64 (12.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../00-libgomp1_12.2.0-14_amd64.deb ... Unpacking libgomp1:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../01-libitm1_12.2.0-14_amd64.deb ... Unpacking libitm1:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../02-libatomic1_12.2.0-14_amd64.deb ... Unpacking libatomic1:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../03-libasan8_12.2.0-14_amd64.deb ... Unpacking libasan8:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../04-liblsan0_12.2.0-14_amd64.deb ... Unpacking liblsan0:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../05-libtsan2_12.2.0-14_amd64.deb ... Unpacking libtsan2:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../06-libubsan1_12.2.0-14_amd64.deb ... Unpacking libubsan1:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../07-libquadmath0_12.2.0-14_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../08-g++-12_12.2.0-14_amd64.deb ... Unpacking g++-12 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../09-libstdc++-12-dev_12.2.0-14_amd64.deb ... Unpacking libstdc++-12-dev:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../10-libgcc-12-dev_12.2.0-14_amd64.deb ... Unpacking libgcc-12-dev:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../11-gcc-12_12.2.0-14_amd64.deb ... Unpacking gcc-12 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../12-cpp-12_12.2.0-14_amd64.deb ... Unpacking cpp-12 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../13-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) over (12.2.0-13) ... Preparing to unpack .../14-libstdc++6_12.2.0-14_amd64.deb ... Unpacking libstdc++6:amd64 (12.2.0-14) over (12.2.0-13) ... Setting up libstdc++6:amd64 (12.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../libc6_2.36-8_amd64.deb ... Unpacking libc6:amd64 (2.36-8) over (2.36-7) ... Setting up libc6:amd64 (2.36-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-8_amd64.deb ... Unpacking libc-bin (2.36-8) over (2.36-7) ... Setting up libc-bin (2.36-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../debconf_1.5.82_all.deb ... Unpacking debconf (1.5.82) over (1.5.81) ... Setting up debconf (1.5.82) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-6_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-6) over (1.5.2-5) ... Setting up libpam0g:amd64 (1.5.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-6_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-6) over (1.5.2-5) ... Setting up libpam-modules-bin (1.5.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-6_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-6) over (1.5.2-5) ... Setting up libpam-modules:amd64 (1.5.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37841 files and directories currently installed.) Preparing to unpack .../0-python3-all-dev_3.11.1-1_amd64.deb ... Unpacking python3-all-dev (3.11.1-1) over (3.10.6-3+b1) ... Preparing to unpack .../1-python3-all_3.11.1-1_amd64.deb ... Unpacking python3-all (3.11.1-1) over (3.10.6-3+b1) ... Preparing to unpack .../2-libpython3-all-dev_3.11.1-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.11.1-1) over (3.10.6-3+b1) ... Preparing to unpack .../3-libpython3-dev_3.11.1-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.1-1) over (3.10.6-3+b1) ... Preparing to unpack .../4-python3-dev_3.11.1-1_amd64.deb ... Unpacking python3-dev (3.11.1-1) over (3.10.6-3+b1) ... Preparing to unpack .../5-python3-minimal_3.11.1-1_amd64.deb ... Unpacking python3-minimal (3.11.1-1) over (3.10.6-3+b1) ... Setting up python3-minimal (3.11.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37839 files and directories currently installed.) Preparing to unpack .../python3_3.11.1-1_amd64.deb ... Unpacking python3 (3.11.1-1) over (3.10.6-3+b1) ... Preparing to unpack .../libpython3-stdlib_3.11.1-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.1-1) over (3.10.6-3+b1) ... Preparing to unpack .../libpam-runtime_1.5.2-6_all.deb ... Unpacking libpam-runtime (1.5.2-6) over (1.5.2-5) ... Setting up libpam-runtime (1.5.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37837 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-1) over (10.40-3) ... Setting up libpcre2-8-0:amd64 (10.42-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37837 files and directories currently installed.) Preparing to unpack .../0-tzdata_2022g-2_all.deb ... Unpacking tzdata (2022g-2) over (2022g-1) ... Preparing to unpack .../1-python3-pkg-resources_65.6.3-1_all.deb ... Unpacking python3-pkg-resources (65.6.3-1) over (65.5.0-1.1) ... Preparing to unpack .../2-python3-numpy_1%3a1.24.1-2_amd64.deb ... Unpacking python3-numpy (1:1.24.1-2) over (1:1.23.5-2) ... Preparing to unpack .../3-python3-pandas-lib_1.5.2+dfsg-5_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.2+dfsg-5) over (1.3.5+dfsg-6) ... Preparing to unpack .../4-python3-pandas_1.5.2+dfsg-5_all.deb ... Unpacking python3-pandas (1.5.2+dfsg-5) over (1.3.5+dfsg-6) ... Preparing to unpack .../5-changeo_1.3.0-1_all.deb ... Unpacking changeo (1.3.0-1) over (1.2.0-1) ... Preparing to unpack .../6-g++_4%3a12.2.0-3_amd64.deb ... Unpacking g++ (4:12.2.0-3) over (4:12.2.0-2+b1) ... Preparing to unpack .../7-gcc_4%3a12.2.0-3_amd64.deb ... Unpacking gcc (4:12.2.0-3) over (4:12.2.0-2+b1) ... Preparing to unpack .../8-cpp_4%3a12.2.0-3_amd64.deb ... Unpacking cpp (4:12.2.0-3) over (4:12.2.0-2+b1) ... Setting up cpp-12 (12.2.0-14) ... Setting up libpython3-dev:amd64 (3.11.1-1) ... Setting up binutils-common:amd64 (2.39.90.20230110-1) ... Installing new version of config file /etc/gprofng.rc ... Setting up linux-libc-dev:amd64 (6.1.4-1) ... Setting up libctf-nobfd0:amd64 (2.39.90.20230110-1) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up tzdata (2022g-2) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 11 15:17:51 UTC 2023. Universal Time is now: Wed Jan 11 15:17:51 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up perl-modules-5.36 (5.36.0-7) ... Setting up libpython3-all-dev:amd64 (3.11.1-1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up cpp (4:12.2.0-3) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libbinutils:amd64 (2.39.90.20230110-1) ... Setting up libc-dev-bin (2.36-8) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up libperl5.36:amd64 (5.36.0-7) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libpython3-stdlib:amd64 (3.11.1-1) ... Setting up libctf0:amd64 (2.39.90.20230110-1) ... Setting up python3 (3.11.1-1) ... Setting up perl (5.36.0-7) ... Setting up libgprofng0:amd64 (2.39.90.20230110-1) ... Setting up python3-dev (3.11.1-1) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libc6-dev:amd64 (2.36-8) ... Setting up binutils-x86-64-linux-gnu (2.39.90.20230110-1) ... Setting up python3-pkg-resources (65.6.3-1) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up python3-all (3.11.1-1) ... Setting up binutils (2.39.90.20230110-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up python3-numpy (1:1.24.1-2) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-all-dev (3.11.1-1) ... Setting up python3-pandas-lib:amd64 (1.5.2+dfsg-5) ... Setting up gcc (4:12.2.0-3) ... Setting up python3-pandas (1.5.2+dfsg-5) ... Setting up changeo (1.3.0-1) ... Setting up g++ (4:12.2.0-3) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for mailcap (3.70+nmu1) ... 2m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-yf', 'dist-upgrade'] 2m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m10.7s DUMP: ed9067cfb1369df4377ca2f9a9b81e8b - 2m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'show', '--no-all-versions', 'changeo'] 2m10.9s DUMP: Package: changeo Version: 1.3.0-1 Installed-Size: 701 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-airr, python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-presto, python3-scipy, python3-yaml, python3:any Recommends: python3-presto (>= 0.6.2) Description-en: Repertoire clonal assignment toolkit (Python 3) Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences. . Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included. . This package installs the library for Python 3. Description-md5: f7df938dee11ca49f4c4cdf5a450df24 Homepage: https://changeo.readthedocs.io Section: science Priority: optional Filename: pool/main/c/changeo/changeo_1.3.0-1_all.deb Size: 107944 MD5sum: 82cf5803987d3415c6860458241854ef SHA256: 1f71f06d5685bda2d58eb69453c90cf2ec6c22f3beea459080dcb13a86612121 2m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'show', '--no-all-versions', 'changeo'] 2m10.9s INFO: apt-cache knows about the following packages: changeo 2m10.9s INFO: Running scripts pre_install 2m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_database-server'] 2m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_database-server'] 2m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_exceptions'] 2m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_exceptions'] 2m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_extras'] 2m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_extras'] 2m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture'] 2m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture'] 2m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy'] 2m11.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy'] 2m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy', 'changeo'] 2m11.0s DUMP: changeo: Installed: 1.3.0-1 Candidate: 1.3.0-1 Version table: *** 1.3.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy', 'changeo'] 2m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-y', 'install', 'changeo'] 2m11.4s DUMP: Reading package lists... Building dependency tree... Reading state information... changeo is already the newest version (1.3.0-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-y', 'install', 'changeo'] 2m11.4s INFO: Running scripts post_install 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_install_exceptions'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_install_exceptions'] 2m11.4s INFO: Running scripts post_distupgrade 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_exceptions'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_exceptions'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_zz_backports'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_distupgrade_zz_backports'] 2m11.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 2m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 2m13.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 2m14.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 2m14.8s INFO: Running scripts pre_install 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_database-server'] 2m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_database-server'] 2m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_exceptions'] 2m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_exceptions'] 2m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_extras'] 2m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_extras'] 2m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture'] 2m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture'] 2m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy'] 2m14.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy'] 2m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy', 'changeo'] 2m15.0s DUMP: changeo: Installed: 1.3.0-1 Candidate: 1.3.0-1 Version table: *** 1.3.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-cache', 'policy', 'changeo'] 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-y', 'install', 'changeo=1.3.0-1'] 2m15.5s DUMP: Reading package lists... Building dependency tree... Reading state information... changeo is already the newest version (1.3.0-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', '-y', 'install', 'changeo=1.3.0-1'] 2m15.5s INFO: Running scripts post_install 2m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_install_exceptions'] 2m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_install_exceptions'] 2m15.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 2m17.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 2m19.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', '-ac', '--ignore-obsolete'] 2m23.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', '-ac', '--ignore-obsolete'] 2m23.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m23.6s DUMP: 0.15.6 2m23.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m23.6s INFO: Running adequate version 0.15.6 now. 2m23.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'changeo'] 2m23.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'changeo'] 2m23.7s INFO: Running scripts pre_remove 2m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_exceptions'] 2m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/pre_remove_exceptions'] 2m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m27.4s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2 install ok installed binutils binutils 2.39.90.20230110-1 install ok installed binutils-common:amd64 binutils-common 2.39.90.20230110-1 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.39.90.20230110-1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed changeo changeo 1.3.0-1 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-3 install ok installed cpp-12 cpp-12 12.2.0-14 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.18 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-4 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-6 install ok installed g++ g++ 4:12.2.0-3 install ok installed g++-12 g++-12 12.2.0-14 install ok installed gcc gcc 4:12.2.0-3 install ok installed gcc-12 gcc-12 12.2.0-14 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libasan8:amd64 libasan8 12.2.0-14 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libbinutils:amd64 libbinutils 2.39.90.20230110-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-18.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbsd0:amd64 libbsd0 0.11.7-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-8 install ok installed libc-dev-bin libc-dev-bin 2.36-8 install ok installed libc6:amd64 libc6 2.36-8 install ok installed libc6-dev:amd64 libc6-dev 2.36-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-14 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.39.90.20230110-1 install ok installed libctf0:amd64 libctf0 2.39.90.20230110-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.266 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-14 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.4-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.39.90.20230110-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libisl23:amd64 libisl23 0.25-1 install ok installed libitm1:amd64 libitm1 12.2.0-14 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1+b1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-2 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-11 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblsan0:amd64 liblsan0 12.2.0-14 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.1.1-3 install ok installed libncursesw6:amd64 libncursesw6 6.4-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6 install ok installed libpam-runtime libpam-runtime 1.5.2-6 install ok installed libpam0g:amd64 libpam0g 1.5.2-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.1-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.1-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.1-1 install ok installed libpython3.10:amd64 libpython3.10 3.10.9-1 install ok installed libpython3.10-dev:amd64 libpython3.10-dev 3.10.9-1 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.9-1 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.9-1 install ok installed libpython3.11:amd64 libpython3.11 3.11.1-2 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.1-2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.1-2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.1-2 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libraqm0:amd64 libraqm0 0.7.0-4 install ok installed libreadline8:amd64 libreadline8 8.2-1.2 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-14 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff5:amd64 libtiff5 4.4.0-6 install ok installed libtinfo6:amd64 libtinfo6 6.4-1 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtsan2:amd64 libtsan2 12.2.0-14 install ok installed libubsan1:amd64 libubsan1 12.2.0-14 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b2 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.2-2+b2 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.2-2+b2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg2-3 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.1.4-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.4-1 install ok installed ncurses-bin ncurses-bin 6.4-1 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-7 install ok installed perl-base perl-base 5.36.0-7 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7 install ok installed python3 python3 3.11.1-1 install ok installed python3-airr python3-airr 1.3.1-1 install ok installed python3-all python3-all 3.11.1-1 install ok installed python3-all-dev python3-all-dev 3.11.1-1 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.80+dfsg-4 install ok installed python3-dateutil python3-dateutil 2.8.2-1 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-dev python3-dev 3.11.1-1 install ok installed python3-distutils python3-distutils 3.10.8-1 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-lib2to3 python3-lib2to3 3.10.8-1 install ok installed python3-minimal python3-minimal 3.11.1-1 install ok installed python3-numpy python3-numpy 1:1.24.1-2 install ok installed python3-pandas python3-pandas 1.5.2+dfsg-5 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.2+dfsg-5 install ok installed python3-pil:amd64 python3-pil 9.4.0-1 install ok installed python3-pkg-resources python3-pkg-resources 65.6.3-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-presto python3-presto 0.7.1-1 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.12-1 install ok installed python3-reportlab python3-reportlab 3.6.12-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.12-1 install ok installed python3-scipy python3-scipy 1.8.1-20 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tz python3-tz 2022.7-1 install ok installed python3-yaml python3-yaml 6.0-3+b1 install ok installed python3-yamlordereddictloader python3-yamlordereddictloader 0.4.0-1.1 install ok installed python3.10 python3.10 3.10.9-1 install ok installed python3.10-dev python3.10-dev 3.10.9-1 install ok installed python3.10-minimal python3.10-minimal 3.10.9-1 install ok installed python3.11 python3.11 3.11.1-2 install ok installed python3.11-dev python3.11-dev 3.11.1-2 install ok installed python3.11-minimal python3.11-minimal 3.11.1-2 install ok installed readline-common readline-common 8.2-1.2 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022g-2 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.1 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 2m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-airr', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-biopython', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-presto', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'changeo'] 3m14.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu changeo cpp cpp-12 fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libexpat1 libexpat1-dev libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libstdc++-12-dev libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxsimd-dev libyaml-0-2 linux-libc-dev mailcap media-types mime-support python3 python3-airr python3-all python3-all-dev python3-beniget python3-biopython python3-dateutil python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-ply python3-presto python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-tz python3-yaml python3-yamlordereddictloader python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 0 newly installed, 148 to remove and 0 not upgraded. After this operation, 885 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37928 files and directories currently installed.) Removing changeo (1.3.0-1) ... Removing python3-presto (0.7.1-1) ... Removing python3-scipy (1.8.1-20) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++ (4:12.2.0-3) ... Removing gcc (4:12.2.0-3) ... Removing cpp (4:12.2.0-3) ... Removing python3-biopython (1.80+dfsg-4) ... Removing python3-renderpm:amd64 (3.6.12-1) ... Removing fonts-urw-base35 (20200910-6) ... Removing g++-12 (12.2.0-14) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-18.1) ... Removing libstdc++-12-dev:amd64 (12.2.0-14) ... Removing python3-airr (1.3.1-1) ... Removing python3-pandas (1.5.2+dfsg-5) ... Removing python3-pandas-lib:amd64 (1.5.2+dfsg-5) ... Removing python3-numpy (1:1.24.1-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing xfonts-utils (1:7.7+6) ... Removing python3-reportlab (3.6.12-1) ... Removing python3-pil:amd64 (9.4.0-1) ... Removing libraqm0:amd64 (0.7.0-4) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-1) ... Removing python3-all-dev (3.11.1-1) ... Removing python3-dev (3.11.1-1) ... Removing python3.11-dev (3.11.1-2) ... Removing libpython3-all-dev:amd64 (3.11.1-1) ... Removing libpython3-dev:amd64 (3.11.1-1) ... Removing libpython3.11-dev:amd64 (3.11.1-2) ... Removing python3.10-dev (3.10.9-1) ... Removing libpython3.10-dev:amd64 (3.10.9-1) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-8) ... Removing libc-dev-bin (2.36-8) ... Removing libcrypt-dev:amd64 (1:4.4.33-2) ... Removing libtiff5:amd64 (4.4.0-6) ... Removing libdeflate0:amd64 (1.14-1) ... Removing python3-yamlordereddictloader (0.4.0-1.1) ... Removing python3-yaml (6.0-3+b1) ... Removing python3-all (3.11.1-1) ... Removing python3-distutils (3.10.8-1) ... Removing python3-reportlab-accel:amd64 (3.6.12-1) ... Removing python3-dateutil (2.8.2-1) ... Removing python3-six (1.16.0-4) ... Removing libpython3.11:amd64 (3.11.1-2) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libharfbuzz0b:amd64 (6.0.0-1) ... Removing libglib2.0-0:amd64 (2.74.4-1) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libpython3.10:amd64 (3.10.9-1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Removing libjs-sphinxdoc (5.3.0-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing liblcms2-2:amd64 (2.14-1) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libopenjp2-7:amd64 (2.5.0-1) ... Removing python3.10 (3.10.9-1) ... Removing python3.10-minimal (3.10.9-1) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libwebpmux3:amd64 (1.2.2-2+b2) ... Removing libwebpdemux2:amd64 (1.2.2-2+b2) ... Removing libwebp7:amd64 (1.2.2-2+b2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing linux-libc-dev:amd64 (6.1.4-1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing python3-beniget (0.4.1-3) ... Removing python3-decorator (5.1.1-3) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.10.8-1) ... Removing python3-pkg-resources (65.6.3-1) ... Removing python3-ply (3.11-5) ... Removing python3-tz (2022.7-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.1) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing gcc-12 (12.2.0-14) ... Removing binutils (2.39.90.20230110-1) ... Removing binutils-x86-64-linux-gnu (2.39.90.20230110-1) ... Removing libgprofng0:amd64 (2.39.90.20230110-1) ... Removing libctf0:amd64 (2.39.90.20230110-1) ... Removing libbinutils:amd64 (2.39.90.20230110-1) ... Removing binutils-common:amd64 (2.39.90.20230110-1) ... Removing cpp-12 (12.2.0-14) ... Removing libgcc-12-dev:amd64 (12.2.0-14) ... Removing libasan8:amd64 (12.2.0-14) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing libcc1-0:amd64 (12.2.0-14) ... Removing libctf-nobfd0:amd64 (2.39.90.20230110-1) ... Removing python3 (3.11.1-1) ... Removing python3.11 (3.11.1-2) ... Removing python3-minimal (3.11.1-1) ... Removing python3.11-minimal (3.11.1-2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libpython3-stdlib:amd64 (3.11.1-1) ... Removing libpython3.11-stdlib:amd64 (3.11.1-2) ... find: '/usr/lib/python3': No such file or directory Removing libpython3.10-stdlib:amd64 (3.10.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libisl23:amd64 (0.25-1) ... Removing libitm1:amd64 (12.2.0-14) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-14) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing libmpfr6:amd64 (4.1.1-3) ... Removing libncursesw6:amd64 (6.4-1) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libpython3.10-minimal:amd64 (3.10.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libpython3.11-minimal:amd64 (3.11.1-2) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (12.2.0-14) ... Removing libreadline8:amd64 (8.2-1.2) ... Removing libsqlite3-0:amd64 (3.40.1-1) ... Removing libtsan2:amd64 (12.2.0-14) ... Removing libubsan1:amd64 (12.2.0-14) ... Removing media-types (8.0.0) ... Removing readline-common (8.2-1.2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libssl3:amd64 (3.0.7-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-8) ... 3m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-airr', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-biopython', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-presto', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'changeo'] 3m14.7s INFO: Running scripts post_remove 3m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_remove_exceptions'] 3m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_remove_exceptions'] 3m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-airr', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-biopython', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-presto', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 3m14.9s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 8090 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.39.90.20230110-1) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed Purging configuration files for fonts-urw-base35 (20200910-6) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-2) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.4-1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.10 which isn't installed dpkg: warning: ignoring request to remove libpython3.10-dev which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.9-1) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.1-2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (8.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for python3 (3.11.1-1) ... dpkg: warning: ignoring request to remove python3-airr which isn't installed dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-presto which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yamlordereddictloader which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed dpkg: warning: ignoring request to remove python3.10-dev which isn't installed Purging configuration files for python3.10-minimal (3.10.9-1) ... dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.1-2) ... Purging configuration files for readline-common (8.2-1.2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python3', 'python3-airr', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-biopython', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-presto', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 3m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--purge', 'changeo'] 3m15.0s DUMP: dpkg: warning: ignoring request to remove changeo which isn't installed 3m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--purge', 'changeo'] 3m15.0s INFO: Running scripts post_purge 3m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_purge_exceptions'] 3m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_purge_exceptions'] 3m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--purge', '--pending'] 3m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--purge', '--pending'] 3m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--remove', '--pending'] 3m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg', '--remove', '--pending'] 3m15.0s INFO: Running scripts post_test 3m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_test_exceptions'] 3m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'tmp/scripts/post_test_exceptions'] 3m15.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 3m15.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 3m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg-divert', '--list'] 3m15.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 3m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'dpkg-divert', '--list'] 3m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'clean'] 3m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55', 'apt-get', 'clean'] 3m15.5s DEBUG: Recording chroot state 3m16.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/shm'] 3m16.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/shm'] 3m16.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/console'] 3m16.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/console'] 3m16.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/ptmx'] 3m16.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/ptmx'] 3m16.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/pts'] 3m16.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/dev/pts'] 3m16.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/proc'] 3m16.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55/proc'] 3m16.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 3m16.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmlu6dm55'] 3m16.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpmlu6dm55 3m16.9s INFO: PASS: Upgrading between Debian distributions. 3m16.9s INFO: PASS: All tests. 3m16.9s INFO: piuparts run ends. ret=0 End: 2023-01-11 15:19:10 GMT