Start: 2020-03-31 12:43:54 GMT [testing] Package: chip-seq Version: 1.5.5-3 Installed-Size: 496 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), chip-seq-data, libmath-round-perl Description: tools performing common ChIP-Seq data analysis tasks Homepage: https://ccg.epfl.ch//chipseq Description-md5: 7a2689deb8d8a514746221aea79879eb Section: science Priority: optional Filename: pool/main/c/chip-seq/chip-seq_1.5.5-3_amd64.deb Size: 101108 MD5sum: 20bf46940d57c43cac17016413efe238 SHA256: b6afd5284ffba50b5fa6f07f3af3f5baf470031f00ceacbe0f57cc302316abbf [sid] Package: chip-seq Version: 1.5.5-3 Installed-Size: 496 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), chip-seq-data, libmath-round-perl Description: tools performing common ChIP-Seq data analysis tasks Homepage: https://ccg.epfl.ch//chipseq Description-md5: 7a2689deb8d8a514746221aea79879eb Section: science Priority: optional Filename: pool/main/c/chip-seq/chip-seq_1.5.5-3_amd64.deb Size: 101108 MD5sum: 20bf46940d57c43cac17016413efe238 SHA256: b6afd5284ffba50b5fa6f07f3af3f5baf470031f00ceacbe0f57cc302316abbf Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt chip-seq=1.5.5-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202003202149~1.1.1-14-ga72a8242 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt chip-seq=1.5.5-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-8-amd64 #1 SMP Debian 4.19.98-1 (2020-01-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5qn9n97i 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5qn9n97i 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5qn9n97i/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'update'] 0m4.9s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [116 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7528 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5808 kB] Fetched 13.5 MB in 2s (6613 kB/s) Reading package lists... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'update'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-yf', 'dist-upgrade'] 0m6.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt gcc-10-base gcc-9-base gpgv libapt-pkg6.0 libcap-ng0 libgcc-s1 libstdc++6 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3964 kB of archives. After this operation, 10.2 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 gcc-10-base amd64 10-20200324-1 [196 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgcc-s1 amd64 10-20200324-1 [41.2 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libstdc++6 amd64 10-20200324-1 [492 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libapt-pkg6.0 amd64 2.0.1 [979 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 gpgv amd64 2.2.20-1 [608 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 apt amd64 2.0.1 [1438 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libcap-ng0 amd64 0.7.9-2.1+b2 [14.6 kB] Get:8 http://mirror-ubc.debian.org/debian bullseye/main amd64 gcc-9-base amd64 9.3.0-8 [197 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3964 kB in 0s (84.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200324-1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200324-1) over (10-20200312-2) ... Setting up gcc-10-base:amd64 (10-20200324-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200324-1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200324-1) over (10-20200312-2) ... Setting up libgcc-s1:amd64 (10-20200324-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libstdc++6_10-20200324-1_amd64.deb ... Unpacking libstdc++6:amd64 (10-20200324-1) over (10-20200312-2) ... Setting up libstdc++6:amd64 (10-20200324-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.0.1_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.0.1) over (2.0.0) ... Setting up libapt-pkg6.0:amd64 (2.0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.20-1_amd64.deb ... Unpacking gpgv (2.2.20-1) over (2.2.19-3) ... Setting up gpgv (2.2.20-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../archives/apt_2.0.1_amd64.deb ... Unpacking apt (2.0.1) over (2.0.0) ... Setting up apt (2.0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.1+b2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2.1+b2) over (0.7.9-2.1+b1) ... Setting up libcap-ng0:amd64 (0.7.9-2.1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.3.0-8_amd64.deb ... Unpacking gcc-9-base:amd64 (9.3.0-8) over (9.3.0-3) ... Setting up gcc-9-base:amd64 (9.3.0-8) ... Processing triggers for libc-bin (2.30-2) ... 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-yf', 'dist-upgrade'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s DUMP: 094775cdfc194b184b52ca5a71286ad3 - 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s INFO: Running scripts post_setup 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_dummy_users'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_dummy_users'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.0.1 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-6 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200324-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-8 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-6 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.0.1 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.30-2 install ok installed libc6:amd64 libc6 2.30-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.15-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-3 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200324-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.12-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.2-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.3-1 install ok installed libselinux1:amd64 libselinux1 3.0-1+b1 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b1 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10-20200324-1 install ok installed libsystemd0:amd64 libsystemd0 244.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2-1 install ok installed libudev1:amd64 libudev1 244.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.2-1 install ok installed ncurses-bin ncurses-bin 6.2-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-3 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m8.4s INFO: Running scripts is_testable 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s INFO: Running scripts pre_test 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_test_root_password'] 0m8.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_test_root_password'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'show', '--no-all-versions', 'chip-seq'] 0m8.6s DUMP: Package: chip-seq Version: 1.5.5-3 Installed-Size: 496 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), chip-seq-data, libmath-round-perl Description-en: tools performing common ChIP-Seq data analysis tasks The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks: . 1. Positional correlation analysis and generation of an aggregation plot (AP) (chipcor), 2. Extraction of specific genome annotation features around reference anchor points (chipextract), 3. Read centering or shifting (chipcenter), 4. Narrow peak caller using a fixed width peak size (chippeak), 5. Broad peak caller used for large regions of enrichment (chippart), 6. Feature selection tool based on a read count threshold (chipscore). . Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format. Description-md5: 7a2689deb8d8a514746221aea79879eb Homepage: https://ccg.epfl.ch//chipseq Section: science Priority: optional Filename: pool/main/c/chip-seq/chip-seq_1.5.5-3_amd64.deb Size: 101108 MD5sum: 20bf46940d57c43cac17016413efe238 SHA256: b6afd5284ffba50b5fa6f07f3af3f5baf470031f00ceacbe0f57cc302316abbf 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'show', '--no-all-versions', 'chip-seq'] 0m8.6s INFO: apt-cache knows about the following packages: chip-seq 0m8.6s INFO: Running scripts pre_install 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy'] 0m8.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy', 'chip-seq'] 0m8.7s DUMP: chip-seq: Installed: (none) Candidate: 1.5.5-3 Version table: 1.5.5-3 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy', 'chip-seq'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-y', 'install', 'chip-seq'] 0m10.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: chip-seq-data libgdbm-compat4 libgdbm6 libmath-round-perl libperl5.30 perl perl-modules-5.30 Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl Recommended packages: netbase The following NEW packages will be installed: chip-seq chip-seq-data libgdbm-compat4 libgdbm6 libmath-round-perl libperl5.30 perl perl-modules-5.30 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 10.3 MB of archives. After this operation, 67.6 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl-modules-5.30 all 5.30.0-9 [2803 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.18.1-5 [64.5 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.18.1-5 [44.2 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libperl5.30 amd64 5.30.0-9 [4008 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 perl amd64 5.30.0-9 [290 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 chip-seq-data all 1.5.5-3 [3004 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libmath-round-perl all 0.07-1 [10.6 kB] Get:8 http://mirror-ubc.debian.org/debian bullseye/main amd64 chip-seq amd64 1.5.5-3 [101 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.3 MB in 0s (59.7 MB/s) Selecting previously unselected package perl-modules-5.30. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6539 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.30_5.30.0-9_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.18.1-5_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-5) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.18.1-5_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-5) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../3-libperl5.30_5.30.0-9_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.0-9) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.30.0-9_amd64.deb ... Unpacking perl (5.30.0-9) ... Selecting previously unselected package chip-seq-data. Preparing to unpack .../5-chip-seq-data_1.5.5-3_all.deb ... Unpacking chip-seq-data (1.5.5-3) ... Selecting previously unselected package libmath-round-perl. Preparing to unpack .../6-libmath-round-perl_0.07-1_all.deb ... Unpacking libmath-round-perl (0.07-1) ... Selecting previously unselected package chip-seq. Preparing to unpack .../7-chip-seq_1.5.5-3_amd64.deb ... Unpacking chip-seq (1.5.5-3) ... Setting up chip-seq-data (1.5.5-3) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Setting up libperl5.30:amd64 (5.30.0-9) ... Setting up perl (5.30.0-9) ... Setting up libmath-round-perl (0.07-1) ... Setting up chip-seq (1.5.5-3) ... Processing triggers for libc-bin (2.30-2) ... 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-y', 'install', 'chip-seq'] 0m10.8s INFO: Running scripts post_install 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_install_exceptions'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_install_exceptions'] 0m10.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m11.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m11.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp5qn9n97i to sid 0m11.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m11.3s INFO: Running scripts pre_distupgrade 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'update'] 0m14.7s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [146 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8216 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6176 kB] Fetched 14.5 MB in 3s (5449 kB/s) Reading package lists... 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'update'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-yf', 'dist-upgrade'] 0m16.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dash libaudit-common libaudit1 libc-bin libc6 libffi7 libselinux1 libsemanage1 libsystemd0 libudev1 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4544 kB of archives. After this operation, 29.7 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 dash amd64 0.5.10.2-7 [114 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libc6 amd64 2.30-4 [2819 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libc-bin amd64 2.30-4 [800 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libsystemd0 amd64 245.2-1 [357 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libaudit-common all 1:2.8.5-3 [23.6 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 libaudit1 amd64 1:2.8.5-3 [58.5 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libffi7 amd64 3.3-4 [22.9 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libselinux1 amd64 3.0-1+b2 [87.0 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libsemanage1 amd64 3.0-1+b2 [96.7 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libudev1 amd64 245.2-1 [165 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4544 kB in 0s (76.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8554 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-7_amd64.deb ... Unpacking dash (0.5.10.2-7) over (0.5.10.2-6) ... Setting up dash (0.5.10.2-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8554 files and directories currently installed.) Preparing to unpack .../libc6_2.30-4_amd64.deb ... Unpacking libc6:amd64 (2.30-4) over (2.30-2) ... Setting up libc6:amd64 (2.30-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8554 files and directories currently installed.) Preparing to unpack .../libc-bin_2.30-4_amd64.deb ... Unpacking libc-bin (2.30-4) over (2.30-2) ... Setting up libc-bin (2.30-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8554 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.2-1_amd64.deb ... Unpacking libsystemd0:amd64 (245.2-1) over (244.3-1) ... Setting up libsystemd0:amd64 (245.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8554 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.5-3_all.deb ... Unpacking libaudit-common (1:2.8.5-3) over (1:2.8.5-2) ... Setting up libaudit-common (1:2.8.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8554 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-3_amd64.deb ... Unpacking libaudit1:amd64 (1:2.8.5-3) over (1:2.8.5-2+b1) ... Setting up libaudit1:amd64 (1:2.8.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8553 files and directories currently installed.) Preparing to unpack .../libffi7_3.3-4_amd64.deb ... Unpacking libffi7:amd64 (3.3-4) over (3.3-3) ... Setting up libffi7:amd64 (3.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8553 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1+b2_amd64.deb ... Unpacking libselinux1:amd64 (3.0-1+b2) over (3.0-1+b1) ... Setting up libselinux1:amd64 (3.0-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8553 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.0-1+b2_amd64.deb ... Unpacking libsemanage1:amd64 (3.0-1+b2) over (3.0-1+b1) ... Setting up libsemanage1:amd64 (3.0-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8553 files and directories currently installed.) Preparing to unpack .../libudev1_245.2-1_amd64.deb ... Unpacking libudev1:amd64 (245.2-1) over (244.3-1) ... Setting up libudev1:amd64 (245.2-1) ... Processing triggers for libc-bin (2.30-4) ... 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-yf', 'dist-upgrade'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.8s DUMP: 398d592a4340e2dff333a9b583827915 - 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'show', '--no-all-versions', 'chip-seq'] 0m16.9s DUMP: Package: chip-seq Version: 1.5.5-3 Installed-Size: 496 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), chip-seq-data, libmath-round-perl Description-en: tools performing common ChIP-Seq data analysis tasks The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks: . 1. Positional correlation analysis and generation of an aggregation plot (AP) (chipcor), 2. Extraction of specific genome annotation features around reference anchor points (chipextract), 3. Read centering or shifting (chipcenter), 4. Narrow peak caller using a fixed width peak size (chippeak), 5. Broad peak caller used for large regions of enrichment (chippart), 6. Feature selection tool based on a read count threshold (chipscore). . Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format. Description-md5: 7a2689deb8d8a514746221aea79879eb Homepage: https://ccg.epfl.ch//chipseq Section: science Priority: optional Filename: pool/main/c/chip-seq/chip-seq_1.5.5-3_amd64.deb Size: 101108 MD5sum: 20bf46940d57c43cac17016413efe238 SHA256: b6afd5284ffba50b5fa6f07f3af3f5baf470031f00ceacbe0f57cc302316abbf 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'show', '--no-all-versions', 'chip-seq'] 0m16.9s INFO: apt-cache knows about the following packages: chip-seq 0m16.9s INFO: Running scripts pre_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy'] 0m17.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy', 'chip-seq'] 0m17.0s DUMP: chip-seq: Installed: 1.5.5-3 Candidate: 1.5.5-3 Version table: *** 1.5.5-3 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy', 'chip-seq'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-y', 'install', 'chip-seq'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... chip-seq is already the newest version (1.5.5-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-y', 'install', 'chip-seq'] 0m17.4s INFO: Running scripts post_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_install_exceptions'] 0m17.4s INFO: Running scripts post_distupgrade 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m18.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m18.2s INFO: Running scripts pre_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy'] 0m18.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy', 'chip-seq'] 0m18.4s DUMP: chip-seq: Installed: 1.5.5-3 Candidate: 1.5.5-3 Version table: *** 1.5.5-3 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-cache', 'policy', 'chip-seq'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-y', 'install', 'chip-seq=1.5.5-3'] 0m18.9s DUMP: Reading package lists... Building dependency tree... Reading state information... chip-seq is already the newest version (1.5.5-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', '-y', 'install', 'chip-seq=1.5.5-3'] 0m18.9s INFO: Running scripts post_install 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_install_exceptions'] 0m18.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m19.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m19.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', '-ac', '--ignore-obsolete'] 0m20.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', '-ac', '--ignore-obsolete'] 0m20.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.5s DUMP: 0.15.2 0m20.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.5s INFO: Running adequate version 0.15.2 now. 0m20.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'chip-seq'] 0m20.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'chip-seq'] 0m20.7s INFO: Running scripts pre_remove 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/pre_remove_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.0.1 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-6 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed chip-seq chip-seq 1.5.5-3 install ok installed chip-seq-data chip-seq-data 1.5.5-3 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200324-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-8 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-6 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.0.1 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.30-4 install ok installed libc6:amd64 libc6 2.30-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.15-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200324-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-5 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-5 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.12-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmath-round-perl libmath-round-perl 0.07-1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.2-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libperl5.30:amd64 libperl5.30 5.30.0-9 install ok installed libseccomp2:amd64 libseccomp2 2.4.3-1 install ok installed libselinux1:amd64 libselinux1 3.0-1+b2 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b2 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10-20200324-1 install ok installed libsystemd0:amd64 libsystemd0 245.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2-1 install ok installed libudev1:amd64 libudev1 245.2-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.2-1 install ok installed ncurses-bin ncurses-bin 6.2-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.30.0-9 install ok installed perl-base perl-base 5.30.0-9 install ok installed perl-modules-5.30 perl-modules-5.30 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-3 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'remove', 'chip-seq-data', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libmath-round-perl', 'libperl5.30:amd64', 'perl', 'perl-modules-5.30', 'chip-seq'] 0m22.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: chip-seq chip-seq-data libgdbm-compat4 libgdbm6 libmath-round-perl libperl5.30 perl perl-modules-5.30 0 upgraded, 0 newly installed, 8 to remove and 0 not upgraded. After this operation, 67.6 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8553 files and directories currently installed.) Removing chip-seq (1.5.5-3) ... Removing chip-seq-data (1.5.5-3) ... Removing libmath-round-perl (0.07-1) ... Removing perl (5.30.0-9) ... Removing libperl5.30:amd64 (5.30.0-9) ... Removing libgdbm-compat4:amd64 (1.18.1-5) ... Removing libgdbm6:amd64 (1.18.1-5) ... Removing perl-modules-5.30 (5.30.0-9) ... Processing triggers for libc-bin (2.30-4) ... 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'remove', 'chip-seq-data', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libmath-round-perl', 'libperl5.30:amd64', 'perl', 'perl-modules-5.30', 'chip-seq'] 0m22.2s INFO: Running scripts post_remove 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_remove_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_remove_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--purge', 'chip-seq-data', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libmath-round-perl', 'libperl5.30:amd64', 'perl', 'perl-modules-5.30'] 0m22.2s DUMP: dpkg: warning: ignoring request to remove chip-seq-data which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libmath-round-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.30 which isn't installed (Reading database ... 6541 files and directories currently installed.) Purging configuration files for perl (5.30.0-9) ... dpkg: warning: ignoring request to remove perl-modules-5.30 which isn't installed 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--purge', 'chip-seq-data', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libmath-round-perl', 'libperl5.30:amd64', 'perl', 'perl-modules-5.30'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--purge', 'chip-seq'] 0m22.2s DUMP: dpkg: warning: ignoring request to remove chip-seq which isn't installed 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--purge', 'chip-seq'] 0m22.2s INFO: Running scripts post_purge 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_purge_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_purge_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--purge', '--pending'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--purge', '--pending'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--remove', '--pending'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg', '--remove', '--pending'] 0m22.3s INFO: Running scripts post_test 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_test_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'tmp/scripts/post_test_exceptions'] 0m22.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m22.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg-divert', '--list'] 0m22.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'dpkg-divert', '--list'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'clean'] 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i', 'apt-get', 'clean'] 0m22.6s DEBUG: Recording chroot state 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/shm'] 0m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/shm'] 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/console'] 0m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/console'] 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/ptmx'] 0m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/ptmx'] 0m23.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/pts'] 0m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/dev/pts'] 0m23.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/proc'] 0m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i/proc'] 0m23.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m23.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5qn9n97i'] 0m23.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5qn9n97i 0m23.4s INFO: PASS: Upgrading between Debian distributions. 0m23.4s INFO: PASS: All tests. 0m23.4s INFO: piuparts run ends. ret=0 End: 2020-03-31 12:44:18 GMT