Start: 2020-04-20 06:48:27 GMT [testing] Package: code-saturne-include Source: code-saturne Version: 6.0.2-1 Installed-Size: 4328 Maintainer: Debian Science Team Architecture: amd64 Replaces: code-saturne-data (<< 3.3.2-3) Depends: python3:any, libcgns-dev, libmedc-dev, libhdf5-dev, zlib1g-dev, mpi-default-dev, libxml2-dev Breaks: code-saturne-data (<< 3.3.2-3) Description: General purpose Computational Fluid Dynamics (CFD) software - includes Homepage: http://www.code-saturne.org/ Description-md5: 2ae3c01e2c637a220de7ed00270e06fb Section: science Priority: optional Filename: pool/main/c/code-saturne/code-saturne-include_6.0.2-1_amd64.deb Size: 600168 MD5sum: 8534e34edcf2900ef72ff4e8a09de196 SHA256: e760ab6e0e9db00c20fdf2bbca295966e7a7946db882357383a1840b9d772c98 [sid] Package: code-saturne-include Source: code-saturne Version: 6.0.2-2 Installed-Size: 4328 Maintainer: Debian Science Team Architecture: amd64 Replaces: code-saturne-data (<< 3.3.2-3) Depends: python3:any, libcgns-dev, libmedc-dev, libhdf5-dev, zlib1g-dev, mpi-default-dev, libxml2-dev Breaks: code-saturne-data (<< 3.3.2-3) Description: General purpose Computational Fluid Dynamics (CFD) software - includes Homepage: http://www.code-saturne.org/ Description-md5: 2ae3c01e2c637a220de7ed00270e06fb Section: science Priority: optional Filename: pool/main/c/code-saturne/code-saturne-include_6.0.2-2_amd64.deb Size: 600144 MD5sum: ffe1c8e423f3b1b7f4344d70576a0762 SHA256: ee291bdf4b24f1b13ebf14296a76a7790fe04a935b50bd4ec93b0e8f69a927c6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt code-saturne-include=6.0.2-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.2~202003202149~1.1.1-14-ga72a8242 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt code-saturne-include=6.0.2-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-8-amd64 #1 SMP Debian 4.19.98-1 (2020-01-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5p4shvb0 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5p4shvb0 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5p4shvb0/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'update'] 0m4.7s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [116 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7638 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5851 kB] Fetched 13.6 MB in 2s (5780 kB/s) Reading package lists... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'update'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-10-base libgcc-s1 libselinux1 libsemanage1 libstdc++6 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 914 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 gcc-10-base amd64 10-20200411-1 [196 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libstdc++6 amd64 10-20200411-1 [493 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgcc-s1 amd64 10-20200411-1 [41.2 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libselinux1 amd64 3.0-1+b3 [87.0 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsemanage1 amd64 3.0-1+b3 [96.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 914 kB in 0s (51.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6538 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200411-1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200411-1) over (10-20200324-1) ... Setting up gcc-10-base:amd64 (10-20200411-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libstdc++6_10-20200411-1_amd64.deb ... Unpacking libstdc++6:amd64 (10-20200411-1) over (10-20200324-1) ... Setting up libstdc++6:amd64 (10-20200411-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200411-1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200411-1) over (10-20200324-1) ... Setting up libgcc-s1:amd64 (10-20200411-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1+b3_amd64.deb ... Unpacking libselinux1:amd64 (3.0-1+b3) over (3.0-1+b1) ... Setting up libselinux1:amd64 (3.0-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6537 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.0-1+b3_amd64.deb ... Unpacking libsemanage1:amd64 (3.0-1+b3) over (3.0-1+b1) ... Setting up libsemanage1:amd64 (3.0-1+b3) ... Processing triggers for libc-bin (2.30-4) ... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s DUMP: a29d56f06d5e830a080d6c34f4c17a63 - 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s INFO: Running scripts post_setup 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.0.2 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-6 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200411-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-10 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-6 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.0.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.30-4 install ok installed libc6:amd64 libc6 2.30-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.16-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200411-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.13-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.2-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.3-1+b1 install ok installed libselinux1:amd64 libselinux1 3.0-1+b3 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b3 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libstdc++6:amd64 libstdc++6 10-20200411-1 install ok installed libsystemd0:amd64 libsystemd0 245.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2-1 install ok installed libudev1:amd64 libudev1 245.4-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.2-1 install ok installed ncurses-bin ncurses-bin 6.2-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.30.0-9 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-3 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_test_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_test_root_password'] 0m7.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_test_root_password'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'show', '--no-all-versions', 'code-saturne-include'] 0m7.3s DUMP: Package: code-saturne-include Source: code-saturne Version: 6.0.2-1 Installed-Size: 4328 Maintainer: Debian Science Team Architecture: amd64 Replaces: code-saturne-data (<< 3.3.2-3) Depends: python3:any, libcgns-dev, libmedc-dev, libhdf5-dev, zlib1g-dev, mpi-default-dev, libxml2-dev Breaks: code-saturne-data (<< 3.3.2-3) Description-en: General purpose Computational Fluid Dynamics (CFD) software - includes The basic capabilities of Code_Saturne enable the handling of either incompressible or expandable flows with or without heat transfer and turbulence. Dedicated modules are available for specific physics such as radiative heat transfer, combustion (gas, coal, heavy fuel oil, ...), magneto-hydrodynamics, compressible flows, two-phase flows (Euler-Lagrange approach with two-way coupling), extensions to specific applications (e.g. Mercure_Saturne for atmospheric environment). . It runs in parallel with MPI on distributed memory machines. Developed since 1997 at EDF R&D, it is based on a co-located Finite Volume approach that accepts meshes with any type of cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral...) and any type of grid structure (unstructured, block structured, hybrid, conforming or with hanging nodes, ...). . This package contains the include files. Description-md5: 2ae3c01e2c637a220de7ed00270e06fb Homepage: http://www.code-saturne.org/ Section: science Priority: optional Filename: pool/main/c/code-saturne/code-saturne-include_6.0.2-1_amd64.deb Size: 600168 MD5sum: 8534e34edcf2900ef72ff4e8a09de196 SHA256: e760ab6e0e9db00c20fdf2bbca295966e7a7946db882357383a1840b9d772c98 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'show', '--no-all-versions', 'code-saturne-include'] 0m7.3s INFO: apt-cache knows about the following packages: code-saturne-include 0m7.3s INFO: Running scripts pre_install 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_database-server'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_extras'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy', 'code-saturne-include'] 0m7.4s DUMP: code-saturne-include: Installed: (none) Candidate: 6.0.2-1 Version table: 6.0.2-1 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy', 'code-saturne-include'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-y', 'install', 'code-saturne-include'] 0m24.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu cpp-9 gcc-9 gfortran-9 hdf5-helpers ibverbs-providers icu-devtools libaec-dev libaec0 libasan5 libatomic1 libbinutils libbsd0 libc-dev-bin libc6-dev libcbor0 libcc1-0 libcgns-dev libcgns3.4 libcrypt-dev libctf-nobfd0 libctf0 libedit2 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libgcc-9-dev libgdbm-compat4 libgdbm6 libgfortran-9-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103 libhdf5-cpp-103 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-103 libhdf5-openmpi-dev libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu63 libisl22 libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libltdl-dev libltdl7 libmedc-dev libmedc11 libmpc3 libmpdec2 libmpfr6 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libperl5.30 libpmix2 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0 librdmacm1 libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libsz2 libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev libxnvctrl0 linux-libc-dev m4 mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.30 python3 python3-minimal python3.8 python3.8-minimal readline-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool gettext binutils-doc gcc-9-locales gcc-9-multilib gcc-9-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev glibc-doc manpages-dev gdbm-l10n krb5-doc krb5-user libhdf5-doc libhwloc-contrib-plugins icu-doc libtool-doc libmed-doc libmed-tools openmpi-doc pciutils sensible-utils pkg-config m4-doc opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support readline-doc Recommended packages: manpages manpages-dev krb5-locales libtool libcoarrays-openmpi-dev bzip2 file xz-utils xauth netbase The following NEW packages will be installed: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu code-saturne-include cpp-9 gcc-9 gfortran-9 hdf5-helpers ibverbs-providers icu-devtools libaec-dev libaec0 libasan5 libatomic1 libbinutils libbsd0 libc-dev-bin libc6-dev libcbor0 libcc1-0 libcgns-dev libcgns3.4 libcrypt-dev libctf-nobfd0 libctf0 libedit2 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libgcc-9-dev libgdbm-compat4 libgdbm6 libgfortran-9-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103 libhdf5-cpp-103 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-103 libhdf5-openmpi-dev libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu63 libisl22 libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libltdl-dev libltdl7 libmedc-dev libmedc11 libmpc3 libmpdec2 libmpfr6 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libperl5.30 libpmix2 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0 librdmacm1 libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libsz2 libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev libxnvctrl0 linux-libc-dev m4 mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.30 python3 python3-minimal python3.8 python3.8-minimal readline-common zlib1g-dev 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After this operation, 420 MB of additional disk space will be used. 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kB] Get:11 http://mirror-ubc.debian.org/debian bullseye/main amd64 mime-support all 3.64 [37.8 kB] Get:12 http://mirror-ubc.debian.org/debian bullseye/main amd64 libmpdec2 amd64 2.4.2-3 [84.1 kB] Get:13 http://mirror-ubc.debian.org/debian bullseye/main amd64 readline-common all 8.0-4 [72.5 kB] Get:14 http://mirror-ubc.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:15 http://mirror-ubc.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.31.1-4 [661 kB] Get:16 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpython3.8-stdlib amd64 3.8.2-1+b1 [1666 kB] Get:17 http://mirror-ubc.debian.org/debian bullseye/main amd64 python3.8 amd64 3.8.2-1+b1 [410 kB] Get:18 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:19 http://mirror-ubc.debian.org/debian bullseye/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:20 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] 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Get:31 http://mirror-ubc.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:32 http://mirror-ubc.debian.org/debian bullseye/main amd64 autoconf all 2.69-11.1 [341 kB] Get:33 http://mirror-ubc.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:34 http://mirror-ubc.debian.org/debian bullseye/main amd64 automake all 1:1.16.2-1 [775 kB] Get:35 http://mirror-ubc.debian.org/debian bullseye/main amd64 binutils-common amd64 2.34-5 [2063 kB] Get:36 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbinutils amd64 2.34-5 [470 kB] Get:37 http://mirror-ubc.debian.org/debian bullseye/main amd64 libctf-nobfd0 amd64 2.34-5 [101 kB] Get:38 http://mirror-ubc.debian.org/debian bullseye/main amd64 libctf0 amd64 2.34-5 [45.8 kB] Get:39 http://mirror-ubc.debian.org/debian bullseye/main amd64 binutils-x86-64-linux-gnu amd64 2.34-5 [1586 kB] Get:40 http://mirror-ubc.debian.org/debian bullseye/main amd64 binutils amd64 2.34-5 [59.0 kB] Get:41 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libevent-pthreads-2.1-7 amd64 2.1.11-stable-1 [55.1 kB] Get:51 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:52 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:53 http://mirror-ubc.debian.org/debian bullseye/main amd64 libibverbs1 amd64 29.0-1 [54.7 kB] Get:54 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6+b1 [169 kB] Get:55 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:56 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.86-1 [177 kB] Get:57 http://mirror-ubc.debian.org/debian bullseye/main amd64 librdmacm1 amd64 29.0-1 [67.0 kB] Get:58 http://mirror-ubc.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.6.2-3+b1 [397 kB] Get:59 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.2.0+dfsg-3 [139 kB] Get:60 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http://mirror-ubc.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.12-3 [37.7 kB] Get:71 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.2.0+dfsg-3 [20.4 kB] Get:72 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpmix2 amd64 3.1.5-1 [443 kB] Get:73 http://mirror-ubc.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.0.3-6 [1997 kB] Get:74 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhdf5-openmpi-103 amd64 1.10.4+repack-11 [1381 kB] Get:75 http://mirror-ubc.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.30-4 [280 kB] Get:76 http://mirror-ubc.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.5.13-2 [1085 kB] Get:77 http://mirror-ubc.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:78 http://mirror-ubc.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.30-4 [2629 kB] Get:79 http://mirror-ubc.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:80 http://mirror-ubc.debian.org/debian bullseye/main amd64 libaec-dev amd64 1.0.4-1 [18.7 kB] Get:81 http://mirror-ubc.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:82 http://mirror-ubc.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+b1 [208 kB] Get:83 http://mirror-ubc.debian.org/debian bullseye/main amd64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get:84 http://mirror-ubc.debian.org/debian bullseye/main amd64 libisl22 amd64 0.22.1-1 [612 kB] Get:85 http://mirror-ubc.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:86 http://mirror-ubc.debian.org/debian bullseye/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:87 http://mirror-ubc.debian.org/debian bullseye/main amd64 cpp-9 amd64 9.3.0-10 [9717 kB] Get:88 http://mirror-ubc.debian.org/debian bullseye/main amd64 libcc1-0 amd64 10-20200411-1 [39.6 kB] Get:89 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgomp1 amd64 10-20200411-1 [99.2 kB] Get:90 http://mirror-ubc.debian.org/debian bullseye/main amd64 libitm1 amd64 10-20200411-1 [25.8 kB] Get:91 http://mirror-ubc.debian.org/debian bullseye/main amd64 libatomic1 amd64 10-20200411-1 [9056 B] Get:92 http://mirror-ubc.debian.org/debian bullseye/main amd64 libasan5 amd64 9.3.0-10 [390 kB] Get:93 http://mirror-ubc.debian.org/debian bullseye/main amd64 liblsan0 amd64 10-20200411-1 [141 kB] Get:94 http://mirror-ubc.debian.org/debian bullseye/main amd64 libtsan0 amd64 10-20200411-1 [313 kB] Get:95 http://mirror-ubc.debian.org/debian bullseye/main amd64 libubsan1 amd64 10-20200411-1 [134 kB] Get:96 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgcc-9-dev amd64 9.3.0-10 [2346 kB] Get:97 http://mirror-ubc.debian.org/debian bullseye/main amd64 gcc-9 amd64 9.3.0-10 [10.0 MB] Get:98 http://mirror-ubc.debian.org/debian bullseye/main amd64 libgfortran-9-dev amd64 9.3.0-10 [676 kB] Get:99 http://mirror-ubc.debian.org/debian bullseye/main amd64 gfortran-9 amd64 9.3.0-10 [10.4 MB] Get:100 http://mirror-ubc.debian.org/debian bullseye/main amd64 openmpi-common all 4.0.3-6 [170 kB] Get:101 http://mirror-ubc.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 29.0-1 [236 kB] Get:102 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnl-3-dev amd64 3.4.0-1+b1 [102 kB] Get:103 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnl-route-3-dev amd64 3.4.0-1+b1 [176 kB] Get:104 http://mirror-ubc.debian.org/debian bullseye/main amd64 libibverbs-dev amd64 29.0-1 [448 kB] Get:105 http://mirror-ubc.debian.org/debian bullseye/main amd64 libnuma-dev amd64 2.0.12-1+b1 [39.3 kB] Get:106 http://mirror-ubc.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-14 [390 kB] Get:107 http://mirror-ubc.debian.org/debian bullseye/main amd64 libltdl-dev amd64 2.4.6-14 [162 kB] Get:108 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhwloc-dev amd64 2.2.0+dfsg-3 [212 kB] Get:109 http://mirror-ubc.debian.org/debian bullseye/main amd64 libevent-extra-2.1-7 amd64 2.1.11-stable-1 [108 kB] Get:110 http://mirror-ubc.debian.org/debian bullseye/main amd64 libevent-openssl-2.1-7 amd64 2.1.11-stable-1 [62.0 kB] Get:111 http://mirror-ubc.debian.org/debian bullseye/main amd64 libevent-dev amd64 2.1.11-stable-1 [309 kB] Get:112 http://mirror-ubc.debian.org/debian bullseye/main amd64 openmpi-bin amd64 4.0.3-6 [186 kB] Get:113 http://mirror-ubc.debian.org/debian bullseye/main amd64 libopenmpi-dev amd64 4.0.3-6 [932 kB] Get:114 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhdf5-openmpi-dev amd64 1.10.4+repack-11 [2527 kB] Get:115 http://mirror-ubc.debian.org/debian bullseye/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get:116 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhdf5-mpi-dev amd64 1.10.4+repack-11 [27.3 kB] Get:117 http://mirror-ubc.debian.org/debian bullseye/main amd64 libmedc11 amd64 4.0.0+repack-9 [400 kB] Get:118 http://mirror-ubc.debian.org/debian bullseye/main amd64 libmedc-dev amd64 4.0.0+repack-9 [441 kB] Get:119 http://mirror-ubc.debian.org/debian bullseye/main amd64 hdf5-helpers amd64 1.10.4+repack-11 [35.2 kB] Get:120 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11 [143 kB] Get:121 http://mirror-ubc.debian.org/debian bullseye/main amd64 libhdf5-dev amd64 1.10.4+repack-11 [2608 kB] Get:122 http://mirror-ubc.debian.org/debian bullseye/main amd64 icu-devtools amd64 63.2-3 [189 kB] Get:123 http://mirror-ubc.debian.org/debian bullseye/main amd64 libicu-dev amd64 63.2-3 [9184 kB] Get:124 http://mirror-ubc.debian.org/debian bullseye/main amd64 libxml2-dev amd64 2.9.10+dfsg-4 [805 kB] Get:125 http://mirror-ubc.debian.org/debian bullseye/main amd64 code-saturne-include amd64 6.0.2-1 [600 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 103 MB in 1s (79.0 MB/s) Selecting previously unselected package perl-modules-5.30. 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Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../061-libaec-dev_1.0.4-1_amd64.deb ... Unpacking libaec-dev:amd64 (1.0.4-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../062-libjpeg62-turbo_1%3a1.5.2-2+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../063-libjpeg62-turbo-dev_1%3a1.5.2-2+b1_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.2-2+b1) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../064-libjpeg-dev_1%3a1.5.2-2_all.deb ... Unpacking libjpeg-dev (1:1.5.2-2) ... Selecting previously unselected package libisl22:amd64. Preparing to unpack .../065-libisl22_0.22.1-1_amd64.deb ... Unpacking libisl22:amd64 (0.22.1-1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../066-libmpfr6_4.0.2-1_amd64.deb ... 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Selecting previously unselected package libasan5:amd64. Preparing to unpack .../073-libasan5_9.3.0-10_amd64.deb ... Unpacking libasan5:amd64 (9.3.0-10) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../074-liblsan0_10-20200411-1_amd64.deb ... Unpacking liblsan0:amd64 (10-20200411-1) ... Selecting previously unselected package libtsan0:amd64. Preparing to unpack .../075-libtsan0_10-20200411-1_amd64.deb ... Unpacking libtsan0:amd64 (10-20200411-1) ... Selecting previously unselected package libubsan1:amd64. Preparing to unpack .../076-libubsan1_10-20200411-1_amd64.deb ... Unpacking libubsan1:amd64 (10-20200411-1) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../077-libgcc-9-dev_9.3.0-10_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.3.0-10) ... Selecting previously unselected package gcc-9. Preparing to unpack .../078-gcc-9_9.3.0-10_amd64.deb ... Unpacking gcc-9 (9.3.0-10) ... Selecting previously unselected package libgfortran-9-dev:amd64. Preparing to unpack .../079-libgfortran-9-dev_9.3.0-10_amd64.deb ... Unpacking libgfortran-9-dev:amd64 (9.3.0-10) ... Selecting previously unselected package gfortran-9. Preparing to unpack .../080-gfortran-9_9.3.0-10_amd64.deb ... Unpacking gfortran-9 (9.3.0-10) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../081-openmpi-common_4.0.3-6_all.deb ... Unpacking openmpi-common (4.0.3-6) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../082-ibverbs-providers_29.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (29.0-1) ... Selecting previously unselected package libnl-3-dev:amd64. Preparing to unpack .../083-libnl-3-dev_3.4.0-1+b1_amd64.deb ... Unpacking libnl-3-dev:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-dev:amd64. Preparing to unpack .../084-libnl-route-3-dev_3.4.0-1+b1_amd64.deb ... Unpacking libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../085-libibverbs-dev_29.0-1_amd64.deb ... Unpacking libibverbs-dev:amd64 (29.0-1) ... Selecting previously unselected package libnuma-dev:amd64. Preparing to unpack .../086-libnuma-dev_2.0.12-1+b1_amd64.deb ... Unpacking libnuma-dev:amd64 (2.0.12-1+b1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../087-libltdl7_2.4.6-14_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-14) ... Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../088-libltdl-dev_2.4.6-14_amd64.deb ... Unpacking libltdl-dev:amd64 (2.4.6-14) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../089-libhwloc-dev_2.2.0+dfsg-3_amd64.deb ... Unpacking libhwloc-dev:amd64 (2.2.0+dfsg-3) ... Selecting previously unselected package libevent-extra-2.1-7:amd64. Preparing to unpack .../090-libevent-extra-2.1-7_2.1.11-stable-1_amd64.deb ... Unpacking libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Selecting previously unselected package libevent-openssl-2.1-7:amd64. Preparing to unpack .../091-libevent-openssl-2.1-7_2.1.11-stable-1_amd64.deb ... Unpacking libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../092-libevent-dev_2.1.11-stable-1_amd64.deb ... Unpacking libevent-dev (2.1.11-stable-1) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../093-openmpi-bin_4.0.3-6_amd64.deb ... Unpacking openmpi-bin (4.0.3-6) ... Selecting previously unselected package libopenmpi-dev:amd64. Preparing to unpack .../094-libopenmpi-dev_4.0.3-6_amd64.deb ... Unpacking libopenmpi-dev:amd64 (4.0.3-6) ... Selecting previously unselected package libhdf5-openmpi-dev. Preparing to unpack .../095-libhdf5-openmpi-dev_1.10.4+repack-11_amd64.deb ... Unpacking libhdf5-openmpi-dev (1.10.4+repack-11) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../096-mpi-default-dev_1.13_amd64.deb ... Unpacking mpi-default-dev (1.13) ... Selecting previously unselected package libhdf5-mpi-dev. Preparing to unpack .../097-libhdf5-mpi-dev_1.10.4+repack-11_amd64.deb ... Unpacking libhdf5-mpi-dev (1.10.4+repack-11) ... Selecting previously unselected package libmedc11:amd64. Preparing to unpack .../098-libmedc11_4.0.0+repack-9_amd64.deb ... Unpacking libmedc11:amd64 (4.0.0+repack-9) ... Selecting previously unselected package libmedc-dev:amd64. Preparing to unpack .../099-libmedc-dev_4.0.0+repack-9_amd64.deb ... Unpacking libmedc-dev:amd64 (4.0.0+repack-9) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../100-hdf5-helpers_1.10.4+repack-11_amd64.deb ... Unpacking hdf5-helpers (1.10.4+repack-11) ... Selecting previously unselected package libhdf5-cpp-103:amd64. Preparing to unpack .../101-libhdf5-cpp-103_1.10.4+repack-11_amd64.deb ... Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../102-libhdf5-dev_1.10.4+repack-11_amd64.deb ... Unpacking libhdf5-dev (1.10.4+repack-11) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../103-icu-devtools_63.2-3_amd64.deb ... Unpacking icu-devtools (63.2-3) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../104-libicu-dev_63.2-3_amd64.deb ... Unpacking libicu-dev:amd64 (63.2-3) ... Selecting previously unselected package libxml2-dev:amd64. Preparing to unpack .../105-libxml2-dev_2.9.10+dfsg-4_amd64.deb ... Unpacking libxml2-dev:amd64 (2.9.10+dfsg-4) ... Selecting previously unselected package code-saturne-include. Preparing to unpack .../106-code-saturne-include_6.0.2-1_amd64.deb ... Unpacking code-saturne-include (6.0.2-1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up perl-modules-5.30 (5.30.0-9) ... Setting up mime-support (3.64) ... Setting up hdf5-helpers (1.10.4+repack-11) ... Setting up libsqlite3-0:amd64 (3.31.1-4) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up binutils-common:amd64 (2.34-5) ... Setting up linux-libc-dev:amd64 (5.5.13-2) ... Setting up libctf-nobfd0:amd64 (2.34-5) ... Setting up libgomp1:amd64 (10-20200411-1) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libkrb5support0:amd64 (1.17-7) ... Setting up libasan5:amd64 (9.3.0-10) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libx11-data (2:1.6.9-2) ... Setting up libmpfr6:amd64 (4.0.2-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libquadmath0:amd64 (10-20200411-1) ... Setting up libhwloc15:amd64 (2.2.0+dfsg-3) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libatomic1:amd64 (10-20200411-1) ... Setting up libevent-2.1-7:amd64 (2.1.11-stable-1) ... Setting up icu-devtools (63.2-3) ... Setting up libk5crypto3:amd64 (1.17-7) ... Setting up libltdl7:amd64 (2.4.6-14) ... Setting up libgfortran5:amd64 (10-20200411-1) ... Setting up libubsan1:amd64 (10-20200411-1) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-3) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.86-1) ... Setting up openmpi-common (4.0.3-6) ... Setting up libisl22:amd64 (0.22.1-1) ... Setting up libkrb5-3:amd64 (1.17-7) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libmpdec2:amd64 (2.4.2-3) ... Setting up libbinutils:amd64 (2.34-5) ... Setting up libfido2-1:amd64 (1.3.1-1) ... Setting up libc-dev-bin (2.30-4) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up readline-common (8.0-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-4) ... Setting up libcc1-0:amd64 (10-20200411-1) ... Setting up liblsan0:amd64 (10-20200411-1) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libitm1:amd64 (10-20200411-1) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libtsan0:amd64 (10-20200411-1) ... Setting up libctf0:amd64 (2.34-5) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libgcc-9-dev:amd64 (9.3.0-10) ... Setting up libhdf5-103:amd64 (1.10.4+repack-11) ... Setting up libevent-dev (2.1.11-stable-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-7) ... Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Setting up libcgns3.4:amd64 (3.4.0-1) ... Setting up libnl-3-dev:amd64 (3.4.0-1+b1) ... Setting up cpp-9 (9.3.0-10) ... Setting up libperl5.30:amd64 (5.30.0-9) ... Setting up libc6-dev:amd64 (2.30-4) ... Setting up libx11-6:amd64 (2:1.6.9-2) ... Setting up libpython3.8-stdlib:amd64 (3.8.2-1+b1) ... Setting up python3.8 (3.8.2-1+b1) ... Setting up libicu-dev:amd64 (63.2-3) ... Setting up libpython3-stdlib:amd64 (3.8.2-3) ... Setting up binutils-x86-64-linux-gnu (2.34-5) ... Setting up libibverbs1:amd64 (29.0-1) ... Setting up ibverbs-providers:amd64 (29.0-1) ... Setting up libcgns-dev (3.4.0-1) ... Setting up openssh-client (1:8.2p1-4) ... Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgfortran-9-dev:amd64 (9.3.0-10) ... Setting up python3 (3.8.2-3) ... Setting up binutils (2.34-5) ... Setting up libnuma-dev:amd64 (2.0.12-1+b1) ... Setting up libxnvctrl0:amd64 (440.82-1) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Setting up perl (5.30.0-9) ... Setting up libxml2-dev:amd64 (2.9.10+dfsg-4) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+b1) ... Setting up autoconf (2.69-11.1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up librdmacm1:amd64 (29.0-1) ... Setting up gcc-9 (9.3.0-10) ... Setting up gfortran-9 (9.3.0-10) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libibverbs-dev:amd64 (29.0-1) ... Setting up libhwloc-plugins:amd64 (2.2.0+dfsg-3) ... Setting up libltdl-dev:amd64 (2.4.6-14) ... Setting up libhdf5-dev (1.10.4+repack-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhwloc-dev:amd64 (2.2.0+dfsg-3) ... Setting up libfabric1 (1.6.2-3+b1) ... Setting up libpmix2:amd64 (3.1.5-1) ... Setting up libopenmpi3:amd64 (4.0.3-6) ... Setting up libhdf5-openmpi-103:amd64 (1.10.4+repack-11) ... Setting up openmpi-bin (4.0.3-6) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libmedc11:amd64 (4.0.0+repack-9) ... Setting up libopenmpi-dev:amd64 (4.0.3-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.10.4+repack-11) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode Setting up mpi-default-dev (1.13) ... Setting up libhdf5-mpi-dev (1.10.4+repack-11) ... Setting up libmedc-dev:amd64 (4.0.0+repack-9) ... Setting up code-saturne-include (6.0.2-1) ... Processing triggers for libc-bin (2.30-4) ... 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-y', 'install', 'code-saturne-include'] 0m24.5s INFO: Running scripts post_install 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_install_exceptions'] 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_install_exceptions'] 0m24.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m25.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m25.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp5p4shvb0 to sid 0m25.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m25.3s INFO: Running scripts pre_distupgrade 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'update'] 0m28.6s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [146 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8233 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6193 kB] Fetched 14.6 MB in 3s (5561 kB/s) Reading package lists... 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'update'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-yf', 'dist-upgrade'] 0m35.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libhdf5-103 libhdf5-cpp-103 libhdf5-openmpi-103 The following NEW packages will be installed: libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhdf5-openmpi-103-1 libhdf5-openmpi-cpp-103-1 libhdf5-openmpi-fortran-102 libhdf5-openmpi-hl-100 libhdf5-openmpi-hl-cpp-100 libhdf5-openmpi-hl-fortran-100 The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu code-saturne-include debconf gcc-10-base hdf5-helpers libatomic1 libbinutils libcc1-0 libcgns-dev libcgns3.4 libctf-nobfd0 libctf0 libfido2-1 libgcc-s1 libgfortran5 libgomp1 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-dev libitm1 liblsan0 libmedc-dev libmedc11 libperl5.30 libquadmath0 libsqlite3-0 libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 libxml2 libxml2-dev linux-libc-dev ocl-icd-libopencl1 perl perl-base perl-modules-5.30 40 upgraded, 12 newly installed, 3 to remove and 0 not upgraded. Need to get 30.6 MB of archives. After this operation, 1796 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 libperl5.30 amd64 5.30.0-10 [4007 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 perl amd64 5.30.0-10 [290 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 perl-base amd64 5.30.0-10 [1574 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 perl-modules-5.30 all 5.30.0-10 [2804 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-dev amd64 1.10.6+repack-1 [2450 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 libcgns-dev amd64 3.4.0-1+b1 [1190 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libcgns3.4 amd64 3.4.0-1+b1 [249 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.6+repack-1 [1185 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libatomic1 amd64 10-20200418-1 [9036 B] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libubsan1 amd64 10-20200418-1 [134 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 libtsan0 amd64 10-20200418-1 [313 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-10-base amd64 10-20200418-1 [196 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 libstdc++6 amd64 10-20200418-1 [492 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 libquadmath0 amd64 10-20200418-1 [145 kB] Get:15 http://mirror-ubc.debian.org/debian sid/main amd64 liblsan0 amd64 10-20200418-1 [141 kB] Get:16 http://mirror-ubc.debian.org/debian sid/main amd64 libitm1 amd64 10-20200418-1 [25.8 kB] Get:17 http://mirror-ubc.debian.org/debian sid/main amd64 libgomp1 amd64 10-20200418-1 [99.2 kB] Get:18 http://mirror-ubc.debian.org/debian sid/main amd64 libgfortran5 amd64 10-20200418-1 [727 kB] Get:19 http://mirror-ubc.debian.org/debian sid/main amd64 libcc1-0 amd64 10-20200418-1 [39.6 kB] Get:20 http://mirror-ubc.debian.org/debian sid/main amd64 libgcc-s1 amd64 10-20200418-1 [41.3 kB] Get:21 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-fortran-102 amd64 1.10.6+repack-1 [104 kB] Get:22 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-1 [81.5 kB] Get:23 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-1 [55.6 kB] Get:24 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-1 [146 kB] Get:25 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-1 [37.1 kB] Get:26 http://mirror-ubc.debian.org/debian sid/main amd64 hdf5-helpers amd64 1.10.6+repack-1 [39.9 kB] Get:27 http://mirror-ubc.debian.org/debian sid/main amd64 libmedc-dev amd64 4.0.0+repack-9+b2 [441 kB] Get:28 http://mirror-ubc.debian.org/debian sid/main amd64 libmedc11 amd64 4.0.0+repack-9+b2 [400 kB] Get:29 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-openmpi-dev amd64 1.10.6+repack-1 [2510 kB] Get:30 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-openmpi-103-1 amd64 1.10.6+repack-1 [1232 kB] Get:31 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-openmpi-fortran-102 amd64 1.10.6+repack-1 [104 kB] Get:32 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-openmpi-hl-100 amd64 1.10.6+repack-1 [81.6 kB] Get:33 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-openmpi-hl-fortran-100 amd64 1.10.6+repack-1 [55.5 kB] Get:34 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-openmpi-cpp-103-1 amd64 1.10.6+repack-1 [146 kB] Get:35 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-openmpi-hl-cpp-100 amd64 1.10.6+repack-1 [37.2 kB] Get:36 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-mpi-dev amd64 1.10.6+repack-1 [32.0 kB] Get:37 http://mirror-ubc.debian.org/debian sid/main amd64 debconf all 1.5.74 [145 kB] Get:38 http://mirror-ubc.debian.org/debian sid/main amd64 libsystemd0 amd64 245.5-1 [360 kB] Get:39 http://mirror-ubc.debian.org/debian sid/main amd64 libudev1 amd64 245.5-1 [167 kB] Get:40 http://mirror-ubc.debian.org/debian sid/main amd64 libctf0 amd64 2.34-6 [45.8 kB] Get:41 http://mirror-ubc.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.34-6 [101 kB] Get:42 http://mirror-ubc.debian.org/debian sid/main amd64 binutils amd64 2.34-6 [59.1 kB] Get:43 http://mirror-ubc.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.34-6 [1588 kB] Get:44 http://mirror-ubc.debian.org/debian sid/main amd64 libbinutils amd64 2.34-6 [469 kB] Get:45 http://mirror-ubc.debian.org/debian sid/main amd64 binutils-common amd64 2.34-6 [2065 kB] Get:46 http://mirror-ubc.debian.org/debian sid/main amd64 libxml2-dev amd64 2.9.10+dfsg-5 [806 kB] Get:47 http://mirror-ubc.debian.org/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:48 http://mirror-ubc.debian.org/debian sid/main amd64 code-saturne-include amd64 6.0.2-2 [600 kB] Get:49 http://mirror-ubc.debian.org/debian sid/main amd64 libfido2-1 amd64 1.4.0-1 [49.5 kB] Get:50 http://mirror-ubc.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:51 http://mirror-ubc.debian.org/debian sid/main amd64 linux-libc-dev amd64 5.5.17-1 [1092 kB] Get:52 http://mirror-ubc.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.12-4 [37.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.6 MB in 0s (61.3 MB/s) (Reading database ... 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Unpacking binutils-x86-64-linux-gnu (2.34-6) over (2.34-5) ... Preparing to unpack .../04-libbinutils_2.34-6_amd64.deb ... Unpacking libbinutils:amd64 (2.34-6) over (2.34-5) ... Preparing to unpack .../05-binutils-common_2.34-6_amd64.deb ... Unpacking binutils-common:amd64 (2.34-6) over (2.34-5) ... Preparing to unpack .../06-libxml2-dev_2.9.10+dfsg-5_amd64.deb ... Unpacking libxml2-dev:amd64 (2.9.10+dfsg-5) over (2.9.10+dfsg-4) ... Preparing to unpack .../07-libxml2_2.9.10+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-5) over (2.9.10+dfsg-4) ... Preparing to unpack .../08-code-saturne-include_6.0.2-2_amd64.deb ... Unpacking code-saturne-include (6.0.2-2) over (6.0.2-1) ... Preparing to unpack .../09-libfido2-1_1.4.0-1_amd64.deb ... Unpacking libfido2-1:amd64 (1.4.0-1) over (1.3.1-1) ... Preparing to unpack .../10-libsqlite3-0_3.31.1-5_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.31.1-5) over (3.31.1-4) ... Preparing to unpack .../11-linux-libc-dev_5.5.17-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.5.17-1) over (5.5.13-2) ... Preparing to unpack .../12-ocl-icd-libopencl1_2.2.12-4_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.12-4) over (2.2.12-3) ... Setting up perl-modules-5.30 (5.30.0-10) ... Setting up hdf5-helpers (1.10.6+repack-1) ... Setting up libsqlite3-0:amd64 (3.31.1-5) ... Setting up binutils-common:amd64 (2.34-6) ... Setting up linux-libc-dev:amd64 (5.5.17-1) ... Setting up libctf-nobfd0:amd64 (2.34-6) ... Setting up libgomp1:amd64 (10-20200418-1) ... Setting up libquadmath0:amd64 (10-20200418-1) ... Setting up libatomic1:amd64 (10-20200418-1) ... Setting up libgfortran5:amd64 (10-20200418-1) ... Setting up libubsan1:amd64 (10-20200418-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-4) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.6+repack-1) ... Setting up libperl5.30:amd64 (5.30.0-10) ... Setting up libbinutils:amd64 (2.34-6) ... Setting up libfido2-1:amd64 (1.4.0-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up libcc1-0:amd64 (10-20200418-1) ... Setting up liblsan0:amd64 (10-20200418-1) ... Setting up libitm1:amd64 (10-20200418-1) ... Setting up libhdf5-openmpi-103-1:amd64 (1.10.6+repack-1) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-1) ... Setting up libtsan0:amd64 (10-20200418-1) ... Setting up libctf0:amd64 (2.34-6) ... Setting up libmedc11:amd64 (4.0.0+repack-9+b2) ... Setting up perl (5.30.0-10) ... Setting up libxml2-dev:amd64 (2.9.10+dfsg-5) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-1) ... Setting up libhdf5-openmpi-fortran-102:amd64 (1.10.6+repack-1) ... Setting up libhdf5-fortran-102:amd64 (1.10.6+repack-1) ... Setting up libcgns3.4:amd64 (3.4.0-1+b1) ... Setting up libhdf5-openmpi-hl-100:amd64 (1.10.6+repack-1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.6+repack-1) ... Setting up libhdf5-openmpi-cpp-103-1:amd64 (1.10.6+repack-1) ... Setting up libhdf5-openmpi-hl-cpp-100:amd64 (1.10.6+repack-1) ... Setting up binutils-x86-64-linux-gnu (2.34-6) ... Setting up libhdf5-openmpi-hl-fortran-100:amd64 (1.10.6+repack-1) ... Setting up libcgns-dev (3.4.0-1+b1) ... Setting up binutils (2.34-6) ... Setting up libhdf5-dev (1.10.6+repack-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhdf5-openmpi-dev (1.10.6+repack-1) ... update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhdf5-mpi-dev (1.10.6+repack-1) ... Setting up libmedc-dev:amd64 (4.0.0+repack-9+b2) ... Setting up code-saturne-include (6.0.2-2) ... Processing triggers for libc-bin (2.30-4) ... 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-yf', 'dist-upgrade'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.3s DUMP: ab37dafb877944eee108323e5f3a4cde - 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'show', '--no-all-versions', 'code-saturne-include'] 0m35.5s DUMP: Package: code-saturne-include Source: code-saturne Version: 6.0.2-2 Installed-Size: 4328 Maintainer: Debian Science Team Architecture: amd64 Replaces: code-saturne-data (<< 3.3.2-3) Depends: python3:any, libcgns-dev, libmedc-dev, libhdf5-dev, zlib1g-dev, mpi-default-dev, libxml2-dev Breaks: code-saturne-data (<< 3.3.2-3) Description-en: General purpose Computational Fluid Dynamics (CFD) software - includes The basic capabilities of Code_Saturne enable the handling of either incompressible or expandable flows with or without heat transfer and turbulence. Dedicated modules are available for specific physics such as radiative heat transfer, combustion (gas, coal, heavy fuel oil, ...), magneto-hydrodynamics, compressible flows, two-phase flows (Euler-Lagrange approach with two-way coupling), extensions to specific applications (e.g. Mercure_Saturne for atmospheric environment). . It runs in parallel with MPI on distributed memory machines. Developed since 1997 at EDF R&D, it is based on a co-located Finite Volume approach that accepts meshes with any type of cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral...) and any type of grid structure (unstructured, block structured, hybrid, conforming or with hanging nodes, ...). . This package contains the include files. Description-md5: 2ae3c01e2c637a220de7ed00270e06fb Homepage: http://www.code-saturne.org/ Section: science Priority: optional Filename: pool/main/c/code-saturne/code-saturne-include_6.0.2-2_amd64.deb Size: 600144 MD5sum: ffe1c8e423f3b1b7f4344d70576a0762 SHA256: ee291bdf4b24f1b13ebf14296a76a7790fe04a935b50bd4ec93b0e8f69a927c6 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'show', '--no-all-versions', 'code-saturne-include'] 0m35.5s INFO: apt-cache knows about the following packages: code-saturne-include 0m35.5s INFO: Running scripts pre_install 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_database-server'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_database-server'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_extras'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_extras'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy'] 0m35.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy', 'code-saturne-include'] 0m35.6s DUMP: code-saturne-include: Installed: 6.0.2-2 Candidate: 6.0.2-2 Version table: *** 6.0.2-2 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy', 'code-saturne-include'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-y', 'install', 'code-saturne-include'] 0m36.0s DUMP: Reading package lists... Building dependency tree... Reading state information... code-saturne-include is already the newest version (6.0.2-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-y', 'install', 'code-saturne-include'] 0m36.0s INFO: Running scripts post_install 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_install_exceptions'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_install_exceptions'] 0m36.0s INFO: Running scripts post_distupgrade 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m36.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m36.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m37.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m37.2s INFO: Running scripts pre_install 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_database-server'] 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_database-server'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_exceptions'] 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_exceptions'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_extras'] 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_extras'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy'] 0m37.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy', 'code-saturne-include'] 0m37.3s DUMP: code-saturne-include: Installed: 6.0.2-2 Candidate: 6.0.2-2 Version table: *** 6.0.2-2 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-cache', 'policy', 'code-saturne-include'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-y', 'install', 'code-saturne-include=6.0.2-2'] 0m37.7s DUMP: Reading package lists... Building dependency tree... Reading state information... code-saturne-include is already the newest version (6.0.2-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', '-y', 'install', 'code-saturne-include=6.0.2-2'] 0m37.7s INFO: Running scripts post_install 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_install_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_install_exceptions'] 0m37.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m38.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m39.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', '-ac', '--ignore-obsolete'] 0m41.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', '-ac', '--ignore-obsolete'] 0m41.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.0s DUMP: 0.15.2 0m41.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.0s INFO: Running adequate version 0.15.2 now. 0m41.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'code-saturne-include'] 0m41.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'code-saturne-include'] 0m41.1s INFO: Running scripts pre_remove 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_exceptions'] 0m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/pre_remove_exceptions'] 0m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.0.2 install ok installed autoconf autoconf 2.69-11.1 install ok installed automake automake 1:1.16.2-1 install ok installed autotools-dev autotools-dev 20180224.1 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.47 install ok installed bash bash 5.0-6 install ok installed binutils binutils 2.34-6 install ok installed binutils-common:amd64 binutils-common 2.34-6 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.34-6 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed code-saturne-include code-saturne-include 6.0.2-2 install ok installed coreutils coreutils 8.30-3+b1 install ok installed cpp-9 cpp-9 9.3.0-10 install ok installed dash dash 0.5.10.2-7 install ok installed debconf debconf 1.5.74 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.9.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.6-1 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.7.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10-20200418-1 install ok installed gcc-9 gcc-9 9.3.0-10 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-10 install ok installed gfortran-9 gfortran-9 9.3.0-10 install ok installed gpgv gpgv 2.2.20-1 install ok installed grep grep 3.4-1 install ok installed gzip gzip 1.10-2 install ok installed hdf5-helpers hdf5-helpers 1.10.6+repack-1 install ok installed hostname hostname 3.23 install ok installed ibverbs-providers:amd64 ibverbs-providers 29.0-1 install ok installed icu-devtools icu-devtools 63.2-3 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-6 install ok installed libaec-dev:amd64 libaec-dev 1.0.4-1 install ok installed libaec0:amd64 libaec0 1.0.4-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.0.2 install ok installed libasan5:amd64 libasan5 9.3.0-10 install ok installed libatomic1:amd64 libatomic1 10-20200418-1 install ok installed libattr1:amd64 libattr1 1:2.4.48-5 install ok installed libaudit-common libaudit-common 1:2.8.5-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-3+b1 install ok installed libbinutils:amd64 libbinutils 2.34-6 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbsd0:amd64 libbsd0 0.10.0-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-2 install ok installed libc-bin libc-bin 2.30-4 install ok installed libc-dev-bin libc-dev-bin 2.30-4 install ok installed libc6:amd64 libc6 2.30-4 install ok installed libc6-dev:amd64 libc6-dev 2.30-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.1+b2 install ok installed libcbor0:amd64 libcbor0 0.5.0+dfsg-2 install ok installed libcc1-0:amd64 libcc1-0 10-20200418-1 install ok installed libcgns-dev libcgns-dev 3.4.0-1+b1 install ok installed libcgns3.4:amd64 libcgns3.4 3.4.0-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.45.6-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.16-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.16-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.34-6 install ok installed libctf0:amd64 libctf0 2.34-6 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.251 install ok installed libedit2:amd64 libedit2 3.1-20191231-1 install ok installed libevent-2.1-7:amd64 libevent-2.1-7 2.1.11-stable-1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.11-stable-1 install ok installed libevent-dev libevent-dev 2.1.11-stable-1 install ok installed libevent-extra-2.1-7:amd64 libevent-extra-2.1-7 2.1.11-stable-1 install ok installed libevent-openssl-2.1-7:amd64 libevent-openssl-2.1-7 2.1.11-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.11-stable-1 install ok installed libexpat1:amd64 libexpat1 2.2.9-1 install ok installed libext2fs2:amd64 libext2fs2 1.45.6-1 install ok installed libfabric1 libfabric1 1.6.2-3+b1 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi7:amd64 libffi7 3.3-4 install ok installed libfido2-1:amd64 libfido2-1 1.4.0-1 install ok installed libgcc-9-dev:amd64 libgcc-9-dev 9.3.0-10 install ok installed libgcc-s1:amd64 libgcc-s1 10-20200418-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.5-5 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-5 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-5 install ok installed libgfortran-9-dev:amd64 libgfortran-9-dev 9.3.0-10 install ok installed libgfortran5:amd64 libgfortran5 10-20200418-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.0+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.13-2 install ok installed libgomp1:amd64 libgomp1 10-20200418-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.37-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-7 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.6+repack-1 install ok installed libhdf5-cpp-103-1:amd64 libhdf5-cpp-103-1 1.10.6+repack-1 install ok installed libhdf5-dev libhdf5-dev 1.10.6+repack-1 install ok installed libhdf5-fortran-102:amd64 libhdf5-fortran-102 1.10.6+repack-1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.6+repack-1 install ok installed libhdf5-hl-cpp-100:amd64 libhdf5-hl-cpp-100 1.10.6+repack-1 install ok installed libhdf5-hl-fortran-100:amd64 libhdf5-hl-fortran-100 1.10.6+repack-1 install ok installed libhdf5-mpi-dev libhdf5-mpi-dev 1.10.6+repack-1 install ok installed libhdf5-openmpi-103-1:amd64 libhdf5-openmpi-103-1 1.10.6+repack-1 install ok installed libhdf5-openmpi-cpp-103-1:amd64 libhdf5-openmpi-cpp-103-1 1.10.6+repack-1 install ok installed libhdf5-openmpi-dev libhdf5-openmpi-dev 1.10.6+repack-1 install ok installed libhdf5-openmpi-fortran-102:amd64 libhdf5-openmpi-fortran-102 1.10.6+repack-1 install ok installed libhdf5-openmpi-hl-100:amd64 libhdf5-openmpi-hl-100 1.10.6+repack-1 install ok installed libhdf5-openmpi-hl-cpp-100:amd64 libhdf5-openmpi-hl-cpp-100 1.10.6+repack-1 install ok installed libhdf5-openmpi-hl-fortran-100:amd64 libhdf5-openmpi-hl-fortran-100 1.10.6+repack-1 install ok installed libhogweed5:amd64 libhogweed5 3.5.1+really3.5.1-2 install ok installed libhwloc-dev:amd64 libhwloc-dev 2.2.0+dfsg-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.2.0+dfsg-3 install ok installed libhwloc15:amd64 libhwloc15 2.2.0+dfsg-3 install ok installed libibverbs-dev:amd64 libibverbs-dev 29.0-1 install ok installed libibverbs1:amd64 libibverbs1 29.0-1 install ok installed libicu-dev:amd64 libicu-dev 63.2-3 install ok installed libicu63:amd64 libicu63 63.2-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-1 install ok installed libisl22:amd64 libisl22 0.22.1-1 install ok installed libitm1:amd64 libitm1 10-20200418-1 install ok installed libjpeg-dev libjpeg-dev 1:1.5.2-2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+b1 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:1.5.2-2+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-7 install ok installed liblsan0:amd64 liblsan0 10-20200418-1 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-14 install ok installed libltdl7:amd64 libltdl7 2.4.6-14 install ok installed liblz4-1:amd64 liblz4-1 1.9.2-2 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+b1 install ok installed libmedc-dev:amd64 libmedc-dev 4.0.0+repack-9+b2 install ok installed libmedc11:amd64 libmedc11 4.0.0+repack-9+b2 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-3 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libncursesw6:amd64 libncursesw6 6.2-1 install ok installed libnettle7:amd64 libnettle7 3.5.1+really3.5.1-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-3-dev:amd64 libnl-3-dev 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnl-route-3-dev:amd64 libnl-route-3-dev 3.4.0-1+b1 install ok installed libnuma-dev:amd64 libnuma-dev 2.0.12-1+b1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1+b1 install ok installed libopenmpi-dev:amd64 libopenmpi-dev 4.0.3-6 install ok installed libopenmpi3:amd64 libopenmpi3 4.0.3-6 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.20-1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.34-7 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libperl5.30:amd64 libperl5.30 5.30.0-10 install ok installed libpmix2:amd64 libpmix2 3.1.5-1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6+b1 install ok installed libpsm2-2 libpsm2-2 11.2.86-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.8.2-3 install ok installed libpython3.8-minimal:amd64 libpython3.8-minimal 3.8.2-1+b1 install ok installed libpython3.8-stdlib:amd64 libpython3.8-stdlib 3.8.2-1+b1 install ok installed libquadmath0:amd64 libquadmath0 10-20200418-1 install ok installed librdmacm1:amd64 librdmacm1 29.0-1 install ok installed libreadline8:amd64 libreadline8 8.0-4 install ok installed libseccomp2:amd64 libseccomp2 2.4.3-1+b1 install ok installed libselinux1:amd64 libselinux1 3.0-1+b3 install ok installed libsemanage-common libsemanage-common 3.0-1 install ok installed libsemanage1:amd64 libsemanage1 3.0-1+b3 install ok installed libsepol1:amd64 libsepol1 3.0-1 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.31.1-5 install ok installed libss2:amd64 libss2 1.45.6-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1f-1 install ok installed libstdc++6:amd64 libstdc++6 10-20200418-1 install ok installed libsystemd0:amd64 libsystemd0 245.5-1 install ok installed libsz2:amd64 libsz2 1.0.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2-1 install ok installed libtsan0:amd64 libtsan0 10-20200418-1 install ok installed libubsan1:amd64 libubsan1 10-20200418-1 install ok installed libudev1:amd64 libudev1 245.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.6.9-2 install ok installed libx11-data libx11-data 2:1.6.9-2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb1:amd64 libxcb1 1.14-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-5 install ok installed libxml2-dev:amd64 libxml2-dev 2.9.10+dfsg-5 install ok installed libxnvctrl0:amd64 libxnvctrl0 440.82-1 install ok installed libzstd1:amd64 libzstd1 1.4.4+dfsg-3 install ok installed linux-libc-dev:amd64 linux-libc-dev 5.5.17-1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.45.6-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed m4 m4 1.4.18-4 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mime-support mime-support 3.64 install ok installed mount mount 2.34-0.1 install ok installed mpi-default-dev mpi-default-dev 1.13 install ok installed ncurses-base ncurses-base 6.2-1 install ok installed ncurses-bin ncurses-bin 6.2-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-4 install ok installed openmpi-bin openmpi-bin 4.0.3-6 install ok installed openmpi-common openmpi-common 4.0.3-6 install ok installed openssh-client openssh-client 1:8.2p1-4 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.30.0-10 install ok installed perl-base perl-base 5.30.0-10 install ok installed perl-modules-5.30 perl-modules-5.30 5.30.0-10 install ok installed python3 python3 3.8.2-3 install ok installed python3-minimal python3-minimal 3.8.2-3 install ok installed python3.8 python3.8 3.8.2-1+b1 install ok installed python3.8-minimal python3.8-minimal 3.8.2-1+b1 install ok installed readline-common readline-common 8.0-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-3 install ok installed tar tar 1.30+dfsg-7 install ok installed tzdata tzdata 2019c-3 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-2 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'remove', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp-9', 'gcc-9', 'gfortran-9', 'hdf5-helpers', 'ibverbs-providers:amd64', 'icu-devtools', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcgns-dev', 'libcgns3.4:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libedit2:amd64', 'libevent-2.1-7:amd64', 'libevent-core-2.1-7:amd64', 'libevent-dev', 'libevent-extra-2.1-7:amd64', 'libevent-openssl-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfido2-1:amd64', 'libgcc-9-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-9-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libhdf5-mpi-dev', 'libhdf5-openmpi-103-1:amd64', 'libhdf5-openmpi-cpp-103-1:amd64', 'libhdf5-openmpi-dev', 'libhdf5-openmpi-fortran-102:amd64', 'libhdf5-openmpi-hl-100:amd64', 'libhdf5-openmpi-hl-cpp-100:amd64', 'libhdf5-openmpi-hl-fortran-100:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu-dev:amd64', 'libicu63:amd64', 'libisl22:amd64', 'libitm1:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmedc-dev:amd64', 'libmedc11:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.30:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsigsegv2:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'linux-libc-dev:amd64', 'm4', 'mime-support', 'mpi-default-dev', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.30', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'readline-common', 'zlib1g-dev:amd64', 'code-saturne-include'] 0m46.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu code-saturne-include cpp-9 gcc-9 gfortran-9 hdf5-helpers ibverbs-providers icu-devtools libaec-dev libaec0 libasan5 libatomic1 libbinutils libbsd0 libc-dev-bin libc6-dev libcbor0 libcc1-0 libcgns-dev libcgns3.4 libcrypt-dev libctf-nobfd0 libctf0 libedit2 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libgcc-9-dev libgdbm-compat4 libgdbm6 libgfortran-9-dev libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhdf5-mpi-dev libhdf5-openmpi-103-1 libhdf5-openmpi-cpp-103-1 libhdf5-openmpi-dev libhdf5-openmpi-fortran-102 libhdf5-openmpi-hl-100 libhdf5-openmpi-hl-cpp-100 libhdf5-openmpi-hl-fortran-100 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu63 libisl22 libitm1 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libltdl-dev libltdl7 libmedc-dev libmedc11 libmpc3 libmpdec2 libmpfr6 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libperl5.30 libpmix2 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0 librdmacm1 libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libsz2 libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev libxnvctrl0 linux-libc-dev m4 mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.30 python3 python3-minimal python3.8 python3.8-minimal readline-common zlib1g-dev 0 upgraded, 0 newly installed, 134 to remove and 0 not upgraded. After this operation, 422 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15918 files and directories currently installed.) Removing code-saturne-include (6.0.2-2) ... Removing libmedc-dev:amd64 (4.0.0+repack-9+b2) ... Removing libhdf5-mpi-dev (1.10.6+repack-1) ... Removing mpi-default-dev (1.13) ... Removing libhdf5-openmpi-dev (1.10.6+repack-1) ... update-alternatives: warning: forcing reinstallation of alternative /usr/bin/mpicc.openmpi because link group mpi is broken update-alternatives: warning: alternative /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc (part of link group hdf5.pc) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/hdf5.pc is dangling; it will be updated with best choice update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Removing libopenmpi-dev:amd64 (4.0.3-6) ... Removing libhwloc-dev:amd64 (2.2.0+dfsg-3) ... Removing libltdl-dev:amd64 (2.4.6-14) ... Removing automake (1:1.16.2-1) ... Removing autoconf (2.69-11.1) ... Removing autotools-dev (20180224.1) ... Removing gfortran-9 (9.3.0-10) ... Removing gcc-9 (9.3.0-10) ... Removing binutils (2.34-6) ... Removing binutils-x86-64-linux-gnu (2.34-6) ... Removing libctf0:amd64 (2.34-6) ... Removing libbinutils:amd64 (2.34-6) ... Removing binutils-common:amd64 (2.34-6) ... Removing cpp-9 (9.3.0-10) ... Removing libhdf5-dev (1.10.6+repack-1) ... Removing hdf5-helpers (1.10.6+repack-1) ... Removing libibverbs-dev:amd64 (29.0-1) ... Removing ibverbs-providers:amd64 (29.0-1) ... Removing libxml2-dev:amd64 (2.9.10+dfsg-5) ... Removing libicu-dev:amd64 (63.2-3) ... Removing icu-devtools (63.2-3) ... Removing libaec-dev:amd64 (1.0.4-1) ... Removing libhdf5-openmpi-cpp-103-1:amd64 (1.10.6+repack-1) ... Removing libmedc11:amd64 (4.0.0+repack-9+b2) ... Removing libcgns-dev (3.4.0-1+b1) ... Removing libcgns3.4:amd64 (3.4.0-1+b1) ... Removing libgfortran-9-dev:amd64 (9.3.0-10) ... Removing libgcc-9-dev:amd64 (9.3.0-10) ... Removing libasan5:amd64 (9.3.0-10) ... Removing libatomic1:amd64 (10-20200418-1) ... Removing openmpi-bin (4.0.3-6) ... Removing openssh-client (1:8.2p1-4) ... Removing libedit2:amd64 (3.1-20191231-1) ... Removing libhdf5-openmpi-hl-fortran-100:amd64 (1.10.6+repack-1) ... Removing libhdf5-openmpi-fortran-102:amd64 (1.10.6+repack-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Removing libnuma-dev:amd64 (2.0.12-1+b1) ... Removing libjpeg-dev (1:1.5.2-2) ... Removing libjpeg62-turbo-dev:amd64 (1:1.5.2-2+b1) ... Removing libc6-dev:amd64 (2.30-4) ... Removing libc-dev-bin (2.30-4) ... Removing libfido2-1:amd64 (1.4.0-1) ... Removing libcbor0:amd64 (0.5.0+dfsg-2) ... Removing libcc1-0:amd64 (10-20200418-1) ... Removing libcrypt-dev:amd64 (1:4.4.16-1) ... Removing libctf-nobfd0:amd64 (2.34-6) ... Removing libevent-dev (2.1.11-stable-1) ... Removing libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Removing libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Removing python3 (3.8.2-3) ... Removing python3.8 (3.8.2-1+b1) ... Removing python3-minimal (3.8.2-3) ... Removing python3.8-minimal (3.8.2-1+b1) ... Removing libexpat1:amd64 (2.2.9-1) ... Removing perl (5.30.0-10) ... Removing libperl5.30:amd64 (5.30.0-10) ... Removing libgdbm-compat4:amd64 (1.18.1-5) ... Removing libgdbm6:amd64 (1.18.1-5) ... Removing libhdf5-hl-fortran-100:amd64 (1.10.6+repack-1) ... Removing libhdf5-fortran-102:amd64 (1.10.6+repack-1) ... Removing libgfortran5:amd64 (10-20200418-1) ... Removing libgomp1:amd64 (10-20200418-1) ... Removing libgssapi-krb5-2:amd64 (1.17-7) ... Removing libhdf5-hl-cpp-100:amd64 (1.10.6+repack-1) ... Removing libhdf5-hl-100:amd64 (1.10.6+repack-1) ... Removing libhdf5-cpp-103-1:amd64 (1.10.6+repack-1) ... Removing libhdf5-openmpi-hl-cpp-100:amd64 (1.10.6+repack-1) ... Removing libhdf5-openmpi-hl-100:amd64 (1.10.6+repack-1) ... Removing libisl22:amd64 (0.22.1-1) ... Removing libitm1:amd64 (10-20200418-1) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Removing libkrb5-3:amd64 (1.17-7) ... Removing libk5crypto3:amd64 (1.17-7) ... Removing libkeyutils1:amd64 (1.6.1-2) ... Removing libkrb5support0:amd64 (1.17-7) ... Removing liblsan0:amd64 (10-20200418-1) ... Removing libltdl7:amd64 (2.4.6-14) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libpython3-stdlib:amd64 (3.8.2-3) ... Removing libpython3.8-stdlib:amd64 (3.8.2-1+b1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-3) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Removing libnl-3-dev:amd64 (3.4.0-1+b1) ... Removing libpython3.8-minimal:amd64 (3.8.2-1+b1) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (10-20200418-1) ... Removing libreadline8:amd64 (8.0-4) ... Removing m4 (1.4.18-4) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libsqlite3-0:amd64 (3.31.1-5) ... Removing libssl1.1:amd64 (1.1.1f-1) ... Removing libtsan0:amd64 (10-20200418-1) ... Removing libubsan1:amd64 (10-20200418-1) ... Removing linux-libc-dev:amd64 (5.5.17-1) ... Removing mime-support (3.64) ... Removing openmpi-common (4.0.3-6) ... Removing perl-modules-5.30 (5.30.0-10) ... Removing readline-common (8.0-4) ... Removing libhdf5-openmpi-103-1:amd64 (1.10.6+repack-1) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-1) ... Removing libsz2:amd64 (1.0.4-1) ... Removing libaec0:amd64 (1.0.4-1) ... Removing libopenmpi3:amd64 (4.0.3-6) ... Removing libpmix2:amd64 (3.1.5-1) ... Removing libhwloc-plugins:amd64 (2.2.0+dfsg-3) ... Removing libxnvctrl0:amd64 (440.82-1) ... Removing libevent-2.1-7:amd64 (2.1.11-stable-1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.11-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.11-stable-1) ... Removing libfabric1 (1.6.2-3+b1) ... Removing libhwloc15:amd64 (2.2.0+dfsg-3) ... Removing librdmacm1:amd64 (29.0-1) ... Removing libibverbs1:amd64 (29.0-1) ... Removing libxml2:amd64 (2.9.10+dfsg-5) ... Removing libicu63:amd64 (63.2-3) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing libpsm2-2 (11.2.86-1) ... Removing libnuma1:amd64 (2.0.12-1+b1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-4) ... Removing libx11-6:amd64 (2:1.6.9-2) ... Removing libxcb1:amd64 (1.14-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.10.0-1) ... Removing libx11-data (2:1.6.9-2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.30-4) ... 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'remove', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp-9', 'gcc-9', 'gfortran-9', 'hdf5-helpers', 'ibverbs-providers:amd64', 'icu-devtools', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcgns-dev', 'libcgns3.4:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libedit2:amd64', 'libevent-2.1-7:amd64', 'libevent-core-2.1-7:amd64', 'libevent-dev', 'libevent-extra-2.1-7:amd64', 'libevent-openssl-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfido2-1:amd64', 'libgcc-9-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-9-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libhdf5-mpi-dev', 'libhdf5-openmpi-103-1:amd64', 'libhdf5-openmpi-cpp-103-1:amd64', 'libhdf5-openmpi-dev', 'libhdf5-openmpi-fortran-102:amd64', 'libhdf5-openmpi-hl-100:amd64', 'libhdf5-openmpi-hl-cpp-100:amd64', 'libhdf5-openmpi-hl-fortran-100:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu-dev:amd64', 'libicu63:amd64', 'libisl22:amd64', 'libitm1:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmedc-dev:amd64', 'libmedc11:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.30:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsigsegv2:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'linux-libc-dev:amd64', 'm4', 'mime-support', 'mpi-default-dev', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.30', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'readline-common', 'zlib1g-dev:amd64', 'code-saturne-include'] 0m46.3s INFO: Running scripts post_remove 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_remove_exceptions'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_remove_exceptions'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--purge', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp-9', 'gcc-9', 'gfortran-9', 'hdf5-helpers', 'ibverbs-providers:amd64', 'icu-devtools', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcgns-dev', 'libcgns3.4:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libedit2:amd64', 'libevent-2.1-7:amd64', 'libevent-core-2.1-7:amd64', 'libevent-dev', 'libevent-extra-2.1-7:amd64', 'libevent-openssl-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfido2-1:amd64', 'libgcc-9-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-9-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libhdf5-mpi-dev', 'libhdf5-openmpi-103-1:amd64', 'libhdf5-openmpi-cpp-103-1:amd64', 'libhdf5-openmpi-dev', 'libhdf5-openmpi-fortran-102:amd64', 'libhdf5-openmpi-hl-100:amd64', 'libhdf5-openmpi-hl-cpp-100:amd64', 'libhdf5-openmpi-hl-fortran-100:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu-dev:amd64', 'libicu63:amd64', 'libisl22:amd64', 'libitm1:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmedc-dev:amd64', 'libmedc11:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.30:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsigsegv2:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'linux-libc-dev:amd64', 'm4', 'mime-support', 'mpi-default-dev', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.30', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'readline-common', 'zlib1g-dev:amd64'] 0m46.6s DUMP: (Reading database ... 6575 files and directories currently installed.) Purging configuration files for autoconf (2.69-11.1) ... dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-9 which isn't installed dpkg: warning: ignoring request to remove gcc-9 which isn't installed dpkg: warning: ignoring request to remove gfortran-9 which isn't installed dpkg: warning: ignoring request to remove hdf5-helpers which isn't installed Purging configuration files for ibverbs-providers:amd64 (29.0-1) ... dpkg: warning: ignoring request to remove icu-devtools which isn't installed dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcbor0 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcgns-dev which isn't installed dpkg: warning: ignoring request to remove libcgns3.4 which isn't installed dpkg: warning: ignoring request to remove libcrypt-dev which isn't installed dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libevent-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-dev which isn't installed dpkg: warning: ignoring request to remove libevent-extra-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-openssl-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libgcc-9-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran-9-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-7) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-dev which isn't installed dpkg: warning: ignoring request to remove libhdf5-fortran-102 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-cpp-100 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-fortran-100 which isn't installed dpkg: warning: ignoring request to remove libhdf5-mpi-dev which isn't installed dpkg: warning: ignoring request to remove libhdf5-openmpi-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-openmpi-cpp-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-openmpi-dev which isn't installed dpkg: warning: ignoring request to remove libhdf5-openmpi-fortran-102 which isn't installed dpkg: warning: ignoring request to remove libhdf5-openmpi-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhdf5-openmpi-hl-cpp-100 which isn't installed dpkg: warning: ignoring request to remove libhdf5-openmpi-hl-fortran-100 which isn't installed dpkg: warning: ignoring request to remove libhwloc-dev which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs-dev which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu-dev which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libisl22 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl-dev which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmedc-dev which isn't installed dpkg: warning: ignoring request to remove libmedc11 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1+b1) ... dpkg: warning: ignoring request to remove libnl-3-dev which isn't installed dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnl-route-3-dev which isn't installed dpkg: warning: ignoring request to remove libnuma-dev which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed Purging configuration files for libopenmpi-dev:amd64 (4.0.3-6) ... dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.30 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.8-minimal:amd64 (3.8.2-1+b1) ... dpkg: warning: ignoring request to remove libpython3.8-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1f-1) ... dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxml2-dev which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove m4 which isn't installed Purging configuration files for mime-support (3.64) ... dpkg: warning: ignoring request to remove mpi-default-dev which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (4.0.3-6) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:8.2p1-4) ... Purging configuration files for perl (5.30.0-10) ... dpkg: warning: ignoring request to remove perl-modules-5.30 which isn't installed Purging configuration files for python3 (3.8.2-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.8 which isn't installed Purging configuration files for python3.8-minimal (3.8.2-1+b1) ... Purging configuration files for readline-common (8.0-4) ... dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--purge', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp-9', 'gcc-9', 'gfortran-9', 'hdf5-helpers', 'ibverbs-providers:amd64', 'icu-devtools', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcgns-dev', 'libcgns3.4:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libedit2:amd64', 'libevent-2.1-7:amd64', 'libevent-core-2.1-7:amd64', 'libevent-dev', 'libevent-extra-2.1-7:amd64', 'libevent-openssl-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfido2-1:amd64', 'libgcc-9-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-9-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libhdf5-mpi-dev', 'libhdf5-openmpi-103-1:amd64', 'libhdf5-openmpi-cpp-103-1:amd64', 'libhdf5-openmpi-dev', 'libhdf5-openmpi-fortran-102:amd64', 'libhdf5-openmpi-hl-100:amd64', 'libhdf5-openmpi-hl-cpp-100:amd64', 'libhdf5-openmpi-hl-fortran-100:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu-dev:amd64', 'libicu63:amd64', 'libisl22:amd64', 'libitm1:amd64', 'libjpeg-dev', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmedc-dev:amd64', 'libmedc11:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.30:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.8-minimal:amd64', 'libpython3.8-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsigsegv2:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libsz2:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxnvctrl0:amd64', 'linux-libc-dev:amd64', 'm4', 'mime-support', 'mpi-default-dev', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.30', 'python3', 'python3-minimal', 'python3.8', 'python3.8-minimal', 'readline-common', 'zlib1g-dev:amd64'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--purge', 'code-saturne-include'] 0m46.6s DUMP: dpkg: warning: ignoring request to remove code-saturne-include which isn't installed 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--purge', 'code-saturne-include'] 0m46.6s INFO: Running scripts post_purge 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_purge_exceptions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_purge_exceptions'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--purge', '--pending'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--purge', '--pending'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--remove', '--pending'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg', '--remove', '--pending'] 0m46.6s INFO: Running scripts post_test 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_test_exceptions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'tmp/scripts/post_test_exceptions'] 0m46.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m47.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg-divert', '--list'] 0m47.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'dpkg-divert', '--list'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'clean'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0', 'apt-get', 'clean'] 0m47.0s DEBUG: Recording chroot state 0m47.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/shm'] 0m47.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/shm'] 0m47.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/console'] 0m47.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/console'] 0m47.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/ptmx'] 0m47.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/ptmx'] 0m47.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/pts'] 0m47.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/dev/pts'] 0m47.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/proc'] 0m47.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0/proc'] 0m47.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m48.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5p4shvb0'] 0m48.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5p4shvb0 0m48.0s INFO: PASS: Upgrading between Debian distributions. 0m48.0s INFO: PASS: All tests. 0m48.0s INFO: piuparts run ends. ret=0 End: 2020-04-20 06:49:15 GMT