Start: 2025-01-30 15:52:27 GMT [testing] Package: cwltool Version: 3.1.20250110105449-2 Installed-Size: 5913 Maintainer: Debian Med Packaging Team Architecture: all Provides: cwl-runner Depends: python3-argcomplete, python3-coloredlogs, python3-cwl-utils (>= 0.32), python3-mypy-extensions, python3-prov, python3-psutil, python3-pydot, python3-pyparsing, python3-rdflib (>> 6), python3-requests, python3-rich-argparse, python3-ruamel.yaml, python3-schema-salad (>= 8.4.20230808163024), python3-spython, python3:any, python3-arcp Recommends: nodejs Suggests: podman | docker.io | singularity-container, cwltool-doc Breaks: toil (<< 5.12.0) Description: Common Workflow Language reference implementation Homepage: https://cwltool.readthedocs.io/ Description-md5: 764364acbad5f207e5f6438f00c333c4 Tag: admin::automation, admin::virtualization, field::astronomy, field::biology, field::biology:bioinformatics, field::biology:molecular, field::biology:structural, field::medicine, field::physics, implemented-in::python, interface::commandline, role::program, science::calculation, scope::utility, system::cloud, system::laptop, system::server, system::virtual, use::analysing, use::filtering, works-with-format::TODO, works-with::semantic-data, works-with::software:package Section: science Priority: optional Filename: pool/main/c/cwltool/cwltool_3.1.20250110105449-2_all.deb Size: 513484 MD5sum: 77e72bea94564b50c68eca713c931f46 SHA256: f07af2da9cae94967ffc105c8af4fc0cdf5cbc2748ea1fbbe739fa598e9aa467 [sid] Package: cwltool Version: 3.1.20250110105449-3 Installed-Size: 5743 Maintainer: Debian Med Packaging Team Architecture: all Provides: cwl-runner Depends: python3-argcomplete, python3-coloredlogs, python3-cwl-utils (>= 0.32), python3-mypy-extensions, python3-prov, python3-psutil, python3-pydot, python3-pyparsing, python3-rdflib (>> 6), python3-requests, python3-rich-argparse, python3-ruamel.yaml, python3-schema-salad (>= 8.4.20230808163024), python3-spython, python3:any, python3-arcp Recommends: nodejs Suggests: podman | docker.io | singularity-container, cwltool-doc Breaks: toil (<< 5.12.0) Description: Common Workflow Language reference implementation Homepage: https://cwltool.readthedocs.io/ Description-md5: 764364acbad5f207e5f6438f00c333c4 Tag: admin::automation, admin::virtualization, field::astronomy, field::biology, field::biology:bioinformatics, field::biology:molecular, field::biology:structural, field::medicine, field::physics, implemented-in::python, interface::commandline, role::program, science::calculation, scope::utility, system::cloud, system::laptop, system::server, system::virtual, use::analysing, use::filtering, works-with-format::TODO, works-with::semantic-data, works-with::software:package Section: science Priority: optional Filename: pool/main/c/cwltool/cwltool_3.1.20250110105449-3_all.deb Size: 514060 MD5sum: 5cac6f20754b36ce197a5771248ad1f2 SHA256: 922b86002c6ea4af0b4c03b74e0d409181a8c3447b6d0b348451ecb380d5e77d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt cwltool=3.1.20250110105449-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt cwltool=3.1.20250110105449-3 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpigm_pu1q 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpigm_pu1q 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpigm_pu1q/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'update'] 0m3.3s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9415 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6317 kB] Fetched 15.9 MB in 2s (7827 kB/s) Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-yf', 'dist-upgrade'] 0m8.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libsystemd0 libudev1 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4044 kB of archives. After this operation, 49.2 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.40-6 [2816 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.40-6 [631 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.2-3 [450 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.2-3 [149 kB] Preconfiguring packages ... Fetched 4044 kB in 3s (1392 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libc6_2.40-6_amd64.deb ... Unpacking libc6:amd64 (2.40-6) over (2.40-5) ... Setting up libc6:amd64 (2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libc-bin_2.40-6_amd64.deb ... Unpacking libc-bin (2.40-6) over (2.40-5) ... Setting up libc-bin (2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libsystemd0_257.2-3_amd64.deb ... Unpacking libsystemd0:amd64 (257.2-3) over (257.2-1) ... Setting up libsystemd0:amd64 (257.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libudev1_257.2-3_amd64.deb ... Unpacking libudev1:amd64 (257.2-3) over (257.2-1) ... Setting up libudev1:amd64 (257.2-3) ... Processing triggers for libc-bin (2.40-6) ... 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-yf', 'dist-upgrade'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.2s DUMP: 383d93bcbdd21e3aa2e487c50a020952 - 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.2s INFO: Running scripts post_setup 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_dummy_users'] 0m10.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_dummy_users'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_forbid_home'] 0m10.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_forbid_home'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_minimize'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_minimize'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_zz_backports'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_setup_zz_backports'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.0s DUMP: install ok installed apt apt 2.9.23 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-1 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-12 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.23 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-12 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-4 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-12 install ok installed libsystemd0:amd64 libsystemd0 257.2-3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257.2-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-1 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.4-1 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2024b-6 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m10.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 0m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 0m10.5s INFO: Running scripts is_testable 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/is_testable_uninstallable'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/is_testable_uninstallable'] 0m10.6s INFO: Running scripts pre_test 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_test_exceptions'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_test_exceptions'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_test_root_password'] 0m10.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_test_root_password'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'show', '--no-all-versions', 'cwltool'] 0m10.9s DUMP: Package: cwltool Version: 3.1.20250110105449-2 Installed-Size: 5913 Maintainer: Debian Med Packaging Team Architecture: all Provides: cwl-runner Depends: python3-argcomplete, python3-coloredlogs, python3-cwl-utils (>= 0.32), python3-mypy-extensions, python3-prov, python3-psutil, python3-pydot, python3-pyparsing, python3-rdflib (>> 6), python3-requests, python3-rich-argparse, python3-ruamel.yaml, python3-schema-salad (>= 8.4.20230808163024), python3-spython, python3:any, python3-arcp Recommends: nodejs Suggests: podman | docker.io | singularity-container, cwltool-doc Breaks: toil (<< 5.12.0) Description-en: Common Workflow Language reference implementation This is the reference implementation of the Common Workflow Language standards. . The CWL open standards are for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, Physics, and Chemistry. . The CWL reference implementation (cwltool) is intended to be feature complete and to provide comprehensive validation of CWL files as well as provide other tools related to working with CWL descriptions. Description-md5: 764364acbad5f207e5f6438f00c333c4 Homepage: https://cwltool.readthedocs.io/ Tag: admin::automation, admin::virtualization, field::astronomy, field::biology, field::biology:bioinformatics, field::biology:molecular, field::biology:structural, field::medicine, field::physics, implemented-in::python, interface::commandline, role::program, science::calculation, scope::utility, system::cloud, system::laptop, system::server, system::virtual, use::analysing, use::filtering, works-with-format::TODO, works-with::semantic-data, works-with::software:package Section: science Priority: optional Filename: pool/main/c/cwltool/cwltool_3.1.20250110105449-2_all.deb Size: 513484 MD5sum: 77e72bea94564b50c68eca713c931f46 SHA256: f07af2da9cae94967ffc105c8af4fc0cdf5cbc2748ea1fbbe739fa598e9aa467 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'show', '--no-all-versions', 'cwltool'] 0m10.9s INFO: apt-cache knows about the following packages: cwltool 0m10.9s INFO: Running scripts pre_install 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_database-server'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_database-server'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_exceptions'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_extras'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_extras'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy'] 0m11.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy', 'cwltool'] 0m11.0s DUMP: cwltool: Installed: (none) Candidate: 3.1.20250110105449-2 Version table: 3.1.20250110105449-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy', 'cwltool'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-y', 'install', 'cwltool'] 0m48.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates cwl-upgrader fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings graphviz libabsl20230802 libann0 libaom3 libatomic1 libavif16 libbrotli1 libcairo2 libcdt5 libcgraph6 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcrypt20 libgd3 libglib2.0-0t64 libgomp1 libgpg-error0 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap liblab-gamut1 liblerc4 libltdl7 libncursesw6 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsm6 libsqlite3-0 libsvtav1enc2 libthai-data libthai0 libtiff6 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 libyuv0 media-types netbase openssl python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common x11-common Suggested packages: podman | docker.io | singularity-container cwltool-doc gsfonts graphviz-doc rng-tools libgd-tools low-memory-monitor libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc python3-doc python3-tk python3-venv python-charset-normalizer-doc cwl-utils python-lxml-doc python3-setuptools python-prov-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc singularity-container python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: nodejs fonts-liberation libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n libgts-bin libheif-plugin-x265 libheif-plugin-aomenc libgpm2 python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-numpy python3-pygraphviz python3-scipy python3-yaml python3-html5rdf python3-orjson black The following NEW packages will be installed: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings graphviz libabsl20230802 libann0 libaom3 libatomic1 libavif16 libbrotli1 libcairo2 libcdt5 libcgraph6 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcrypt20 libgd3 libglib2.0-0t64 libgomp1 libgpg-error0 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap liblab-gamut1 liblerc4 libltdl7 libncursesw6 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsm6 libsqlite3-0 libsvtav1enc2 libthai-data libthai0 libtiff6 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 libyuv0 media-types netbase openssl python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common x11-common 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. Need to get 62.2 MB of archives. After this operation, 267 MB of additional disk space will be used. 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http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-12 [9300 B] Get:88 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.4-2 [1502 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-2 [415 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2 [463 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.4-2+b4 [42.8 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.4-2+b4 [685 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.4-2+b4 [193 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.4-2+b4 [198 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.4-2+b4 [619 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 python3-pydot all 2.0.0-3 [32.6 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get:132 http://deb.debian.org/debian trixie/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 python3-rich all 13.9.4-1 [203 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 python3-rich-argparse all 1.6.0-2 [16.9 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 python3-spython all 0.3.13-2 [55.2 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 python3-arcp all 0.2.1-7 [13.6 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 cwltool all 3.1.20250110105449-2 [513 kB] Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... 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Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libgomp1:amd64 (14.2.0-12) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libpathplan4:amd64 (2.42.4-2+b4) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-3) ... Setting up libatomic1:amd64 (14.2.0-12) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libltdl7:amd64 (2.5.4-2) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up librav1e0.7:amd64 (0.7.1-9) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libabsl20230802:amd64 (20230802.1-4) ... Setting up libcdt5:amd64 (2.42.4-2+b4) ... Setting up libcgraph6:amd64 (2.42.4-2+b4) ... Setting up libde265-0:amd64 (1.0.15-1+b2) ... Setting up openssl (3.4.0-2) ... Setting up libyuv0:amd64 (0.0.1899.20250103-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgav1-1:amd64 (0.19.0-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libgvpr2:amd64 (2.42.4-2+b4) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:amd64 (10.2.0-1) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-2) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.1.1-1) ... Setting up python3.13 (3.13.1-3) ... Setting up libpango-1.0-0:amd64 (1.56.1-1) ... Setting up python3 (3.13.1-2) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2024.12.14+ds-1) ... Setting up python3-spython (0.3.13-2) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-mdurl (0.1.2-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up python3-rdflib (7.1.1-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-msgpack (1.0.3-3+b3) ... Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ... Setting up python3-argcomplete (3.5.3-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-mistune (3.0.2-2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-arcp (0.2.1-7) ... Setting up python3-filelock (3.16.1-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-rich (13.9.4-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-mypy-extensions (1.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-ruamel.yaml.clib (0.2.12+ds-1) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-ruamel.yaml (0.18.10+ds-1) ... Setting up python3-rich-argparse (1.6.0-2) ... Setting up python3-cachecontrol (0.14.2-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-schema-salad (8.8.20241206093842-2) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-prov (2.0.1-1) ... Setting up cwl-upgrader (1.2.12-1) ... Setting up python3-cwl-utils (0.36-1) ... Setting up libheif-plugin-dav1d:amd64 (1.19.5-1+b1) ... Setting up libheif-plugin-libde265:amd64 (1.19.5-1+b1) ... Setting up libheif1:amd64 (1.19.5-1+b1) ... Setting up libgd3:amd64 (2.3.3-12+b1) ... Setting up libgvc6 (2.42.4-2+b4) ... Setting up graphviz (2.42.4-2+b4) ... Setting up python3-pydot (2.0.0-3) ... Setting up cwltool (3.1.20250110105449-2) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-y', 'install', 'cwltool'] 0m48.7s INFO: Running scripts post_install 0m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_install_exceptions'] 0m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_install_exceptions'] 0m48.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 0m50.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 0m50.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpigm_pu1q to sid 0m50.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m50.0s INFO: Running scripts pre_distupgrade 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_exceptions'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_exceptions'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'update'] 1m7.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7345 kB] Fetched 17.6 MB in 16s (1106 kB/s) Reading package lists... 1m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'update'] 1m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-yf', 'dist-upgrade'] 1m26.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bsdutils cwltool dpkg gcc-14-base libapt-pkg6.0t64 libatomic1 libblkid1 libgcc-s1 libgomp1 libltdl7 liblz4-1 libmount1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng16-16t64 libselinux1 libsemanage-common libsemanage2 libsmartcols1 libstdc++6 libuuid1 libxxhash0 login mount tzdata util-linux 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9453 kB of archives. After this operation, 156 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.4-2 [106 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-15 [9280 B] Get:3 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-15 [137 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-15 [48.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-15 [72.7 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-15 [713 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.10.0-3 [63.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.26 [1115 kB] Get:10 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.14 [1537 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.4-2 [36.3 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.4-2 [169 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.4-2 [199 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.4-2 [140 kB] Get:15 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.4-2 [1213 kB] Get:16 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.4-2 [155 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.7-3.1 [76.8 kB] Get:18 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.26 [1433 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.7.0-2 [69.8 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.7.0-2 [48.8 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.7.0-2 [177 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.7.0-2 [248 kB] Get:23 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.4-2 [88.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 tzdata all 2025a-1 [259 kB] Get:25 http://deb.debian.org/debian sid/main amd64 cwltool all 3.1.20250110105449-3 [514 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.5.4-2.1 [415 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.46-1 [283 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.7-2.1 [7208 B] Get:29 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.7-2.1 [91.2 kB] Preconfiguring packages ... Fetched 9453 kB in 12s (767 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15525 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.4-2_amd64.deb ... Unpacking bsdutils (1:2.40.4-2) over (1:2.40.4-1) ... Setting up bsdutils (1:2.40.4-2) ... (Reading database ... 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Preparing to unpack .../3-libltdl7_2.5.4-2.1_amd64.deb ... Unpacking libltdl7:amd64 (2.5.4-2.1) over (2.5.4-2) ... Preparing to unpack .../4-libpng16-16t64_1.6.46-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.46-1) over (1.6.44-3) ... Preparing to unpack .../5-libsemanage-common_3.7-2.1_all.deb ... Unpacking libsemanage-common (3.7-2.1) over (3.7-2) ... Preparing to unpack .../6-libsemanage2_3.7-2.1_amd64.deb ... Unpacking libsemanage2:amd64 (3.7-2.1) over (3.7-2+b1) ... Setting up cwltool (3.1.20250110105449-3) ... Setting up libgomp1:amd64 (14.2.0-15) ... Setting up libsemanage-common (3.7-2.1) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jan 30 15:53:54 UTC 2025. Universal Time is now: Thu Jan 30 15:53:54 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpng16-16t64:amd64 (1.6.46-1) ... Setting up libatomic1:amd64 (14.2.0-15) ... Setting up libltdl7:amd64 (2.5.4-2.1) ... Setting up mount (2.40.4-2) ... Setting up libsemanage2:amd64 (3.7-2.1) ... Setting up login (1:4.16.0-2+really2.40.4-2) ... Processing triggers for libc-bin (2.40-6) ... 1m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-yf', 'dist-upgrade'] 1m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m28.1s DUMP: 6fd3b41a1c3d02971c180bd16a7e11f2 - 1m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'show', '--no-all-versions', 'cwltool'] 1m28.4s DUMP: Package: cwltool Version: 3.1.20250110105449-3 Installed-Size: 5743 Maintainer: Debian Med Packaging Team Architecture: all Provides: cwl-runner Depends: python3-argcomplete, python3-coloredlogs, python3-cwl-utils (>= 0.32), python3-mypy-extensions, python3-prov, python3-psutil, python3-pydot, python3-pyparsing, python3-rdflib (>> 6), python3-requests, python3-rich-argparse, python3-ruamel.yaml, python3-schema-salad (>= 8.4.20230808163024), python3-spython, python3:any, python3-arcp Recommends: nodejs Suggests: podman | docker.io | singularity-container, cwltool-doc Breaks: toil (<< 5.12.0) Description-en: Common Workflow Language reference implementation This is the reference implementation of the Common Workflow Language standards. . The CWL open standards are for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, Physics, and Chemistry. . The CWL reference implementation (cwltool) is intended to be feature complete and to provide comprehensive validation of CWL files as well as provide other tools related to working with CWL descriptions. Description-md5: 764364acbad5f207e5f6438f00c333c4 Homepage: https://cwltool.readthedocs.io/ Tag: admin::automation, admin::virtualization, field::astronomy, field::biology, field::biology:bioinformatics, field::biology:molecular, field::biology:structural, field::medicine, field::physics, implemented-in::python, interface::commandline, role::program, science::calculation, scope::utility, system::cloud, system::laptop, system::server, system::virtual, use::analysing, use::filtering, works-with-format::TODO, works-with::semantic-data, works-with::software:package Section: science Priority: optional Filename: pool/main/c/cwltool/cwltool_3.1.20250110105449-3_all.deb Size: 514060 MD5sum: 5cac6f20754b36ce197a5771248ad1f2 SHA256: 922b86002c6ea4af0b4c03b74e0d409181a8c3447b6d0b348451ecb380d5e77d 1m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'show', '--no-all-versions', 'cwltool'] 1m28.4s INFO: apt-cache knows about the following packages: cwltool 1m28.4s INFO: Running scripts pre_install 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_database-server'] 1m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_database-server'] 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_exceptions'] 1m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_exceptions'] 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_extras'] 1m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_extras'] 1m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture'] 1m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture'] 1m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy'] 1m28.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy'] 1m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy', 'cwltool'] 1m28.7s DUMP: cwltool: Installed: 3.1.20250110105449-3 Candidate: 3.1.20250110105449-3 Version table: *** 3.1.20250110105449-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy', 'cwltool'] 1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-y', 'install', 'cwltool'] 1m29.6s DUMP: Reading package lists... Building dependency tree... Reading state information... cwltool is already the newest version (3.1.20250110105449-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-y', 'install', 'cwltool'] 1m29.6s INFO: Running scripts post_install 1m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_install_exceptions'] 1m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_install_exceptions'] 1m29.6s INFO: Running scripts post_distupgrade 1m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_exceptions'] 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_exceptions'] 1m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_zz_backports'] 1m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_distupgrade_zz_backports'] 1m29.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m31.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m31.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m32.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m32.3s INFO: Running scripts pre_install 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_database-server'] 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_database-server'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_exceptions'] 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_exceptions'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_extras'] 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_extras'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture'] 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy'] 1m32.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy'] 1m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy', 'cwltool'] 1m32.4s DUMP: cwltool: Installed: 3.1.20250110105449-3 Candidate: 3.1.20250110105449-3 Version table: *** 3.1.20250110105449-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-cache', 'policy', 'cwltool'] 1m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-y', 'install', 'cwltool=3.1.20250110105449-3'] 1m33.1s DUMP: Reading package lists... Building dependency tree... Reading state information... cwltool is already the newest version (3.1.20250110105449-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', '-y', 'install', 'cwltool=3.1.20250110105449-3'] 1m33.1s INFO: Running scripts post_install 1m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_install_exceptions'] 1m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_install_exceptions'] 1m33.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m34.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m35.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', '-ac', '--ignore-obsolete'] 1m37.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', '-ac', '--ignore-obsolete'] 1m37.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.9s DUMP: 0.15.6 1m37.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.9s INFO: Running adequate version 0.15.6 now. 1m37.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'cwltool'] 1m38.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'cwltool'] 1m38.1s INFO: Running scripts pre_remove 1m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m42.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m42.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_exceptions'] 1m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/pre_remove_exceptions'] 1m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m43.0s DUMP: install ok installed apt apt 2.9.26 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-2 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.5-1+b1 install ok installed cwl-upgrader cwl-upgrader 1.2.12-1 install ok installed cwltool cwltool 3.1.20250110105449-3 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.14 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2 install ok installed fontconfig-config fontconfig-config 2.15.0-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-15 install ok installed graphviz graphviz 2.42.4-2+b4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libabsl20230802:amd64 libabsl20230802 20230802.1-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libann0 libann0 1.1.2+doc-9+b1 install ok installed libaom3:amd64 libaom3 3.11.0-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.26 install ok installed libatomic1:amd64 libatomic1 14.2.0-15 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libavif16:amd64 libavif16 1.1.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.4-2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcdt5:amd64 libcdt5 2.42.4-2+b4 install ok installed libcgraph6:amd64 libcgraph6 2.42.4-2+b4 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1 install ok installed libdav1d7:amd64 libdav1d7 1.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libde265-0:amd64 libde265-0 1.0.15-1+b2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgav1-1:amd64 libgav1-1 0.19.0-3 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-15 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7 install ok installed libgd3:amd64 libgd3 2.3.3-12+b1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.82.4-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgomp1:amd64 libgomp1 14.2.0-15 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgts-0.7-5t64:amd64 libgts-0.7-5t64 0.7.6+darcs121130-5.2+b1 install ok installed libgvc6 libgvc6 2.42.4-2+b4 install ok installed libgvpr2:amd64 libgvpr2 2.42.4-2+b4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.19.5-1+b1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.19.5-1+b1 install ok installed libheif1:amd64 libheif1 1.19.5-1+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu72:amd64 libicu72 72.1-6 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.4-2+b4 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed libltdl7:amd64 libltdl7 2.5.4-2.1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-2 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-2 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-2 install ok installed libpam-runtime libpam-runtime 1.7.0-2 install ok installed libpam0g:amd64 libpam0g 1.7.0-2 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.1-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.1-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.1-1 install ok installed libpathplan4:amd64 libpathplan4 2.42.4-2+b4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.46-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.1-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.1-3 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.1-3 install ok installed libraqm0:amd64 libraqm0 0.10.2-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-9 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3.1 install ok installed libsemanage-common libsemanage-common 3.7-2.1 install ok installed libsemanage2:amd64 libsemanage2 3.7-2.1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.4-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-15 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 257.2-3 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257.2-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-2 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.16-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3+b4 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b4 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.1+b1 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyuv0:amd64 libyuv0 0.0.1899.20250103-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-2 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.4-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.4.0-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed python3 python3 3.13.1-2 install ok installed python3-arcp python3-arcp 0.2.1-7 install ok installed python3-argcomplete python3-argcomplete 3.5.3-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-cachecontrol python3-cachecontrol 0.14.2-1 install ok installed python3-certifi python3-certifi 2024.12.14+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.0-1+b1 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-1 install ok installed python3-cwl-utils python3-cwl-utils 0.36-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-filelock python3-filelock 3.16.1-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-6 install ok installed python3-idna python3-idna 3.8-2 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-lxml:amd64 python3-lxml 5.3.0-1+b1 install ok installed python3-markdown-it python3-markdown-it 3.0.0-2 install ok installed python3-mdurl python3-mdurl 0.1.2-1 install ok installed python3-minimal python3-minimal 3.13.1-2 install ok installed python3-mistune python3-mistune 3.0.2-2 install ok installed python3-more-itertools python3-more-itertools 10.6.0-1 install ok installed python3-msgpack python3-msgpack 1.0.3-3+b3 install ok installed python3-mypy-extensions python3-mypy-extensions 1.0.0-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pkg-resources python3-pkg-resources 75.6.0-1 install ok installed python3-prov python3-prov 2.0.1-1 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-pydot python3-pydot 2.0.0-3 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-rdflib python3-rdflib 7.1.1-2 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-rich python3-rich 13.9.4-1 install ok installed python3-rich-argparse python3-rich-argparse 1.6.0-2 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.18.10+ds-1 install ok installed python3-ruamel.yaml.clib python3-ruamel.yaml.clib 0.2.12+ds-1 install ok installed python3-schema-salad python3-schema-salad 8.8.20241206093842-2 install ok installed python3-spython python3-spython 0.3.13-2 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-urllib3 python3-urllib3 2.3.0-1 install ok installed python3.13 python3.13 3.13.1-3 install ok installed python3.13-minimal python3.13-minimal 3.13.1-3 install ok installed readline-common readline-common 8.2-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-2 install ok installed x11-common x11-common 1:7.7+24 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 1m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'remove', 'ca-certificates', 'cwl-upgrader', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'graphviz', 'libabsl20230802:amd64', 'libann0', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'liblab-gamut1:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsvtav1enc2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6t64:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'x11-common', 'cwltool'] 1m50.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings graphviz libabsl20230802 libann0 libaom3 libatomic1 libavif16 libbrotli1 libcairo2 libcdt5 libcgraph6 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcrypt20 libgd3 libglib2.0-0t64 libgomp1 libgpg-error0 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap liblab-gamut1 liblerc4 libltdl7 libncursesw6 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsm6 libsqlite3-0 libsvtav1enc2 libthai-data libthai0 libtiff6 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 libyuv0 media-types netbase openssl python3 python3-arcp python3-argcomplete python3-autocommand python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-more-itertools python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common x11-common 0 upgraded, 0 newly installed, 138 to remove and 0 not upgraded. After this operation, 267 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15506 files and directories currently installed.) Removing cwltool (3.1.20250110105449-3) ... Removing python3-cwl-utils (0.36-1) ... Removing cwl-upgrader (1.2.12-1) ... Removing python3-pydot (2.0.0-3) ... Removing graphviz (2.42.4-2+b4) ... Removing libgvc6 (2.42.4-2+b4) ... Removing libpangocairo-1.0-0:amd64 (1.56.1-1) ... Removing libpangoft2-1.0-0:amd64 (1.56.1-1) ... Removing libpango-1.0-0:amd64 (1.56.1-1) ... Removing fontconfig (2.15.0-2) ... Removing libgd3:amd64 (2.3.3-12+b1) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing libfontconfig1:amd64 (2.15.0-2) ... Removing fontconfig-config (2.15.0-2) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libavif16:amd64 (1.1.1-1) ... Removing libgav1-1:amd64 (0.19.0-3) ... Removing libabsl20230802:amd64 (20230802.1-4) ... Removing libann0 (1.1.2+doc-9+b1) ... Removing libaom3:amd64 (3.11.0-1) ... Removing libraqm0:amd64 (0.10.2-1) ... Removing libharfbuzz0b:amd64 (10.2.0-1) ... Removing libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Removing libglib2.0-0t64:amd64 (2.82.4-2) ... Removing libatomic1:amd64 (14.2.0-15) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libgvpr2:amd64 (2.42.4-2+b4) ... Removing libcgraph6:amd64 (2.42.4-2+b4) ... Removing libcdt5:amd64 (2.42.4-2+b4) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libtiff6:amd64 (4.5.1+git230720-5) ... Removing libdeflate0:amd64 (1.23-1+b1) ... Removing python3-prov (2.0.1-1) ... Removing python3-networkx (3.2.1-5) ... Removing python3-pkg-resources (75.6.0-1) ... Removing python3-rich-argparse (1.6.0-2) ... Removing python3-rich (13.9.4-1) ... Removing python3-coloredlogs (15.0.1-1) ... Removing python3-humanfriendly (10.0-6) ... Removing python3-psutil (5.9.8-2) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.1-1) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing python3-lxml:amd64 (5.3.0-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1.1+b1) ... Removing libgcrypt20:amd64 (1.11.0-7) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgomp1:amd64 (14.2.0-15) ... Removing libgpg-error0:amd64 (1.51-3) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libxaw7:amd64 (2:1.0.16-1) ... Removing libxmu6:amd64 (2:1.1.3-3+b4) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Removing libsm6:amd64 (2:1.2.4-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libicu72:amd64 (72.1-6) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libyuv0:amd64 (0.0.1899.20250103-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing liblab-gamut1:amd64 (2.42.4-2+b4) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing libltdl7:amd64 (2.5.4-2.1) ... Removing libpathplan4:amd64 (2.42.4-2+b4) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.46-1) ... Removing librav1e0.7:amd64 (0.7.1-9) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libthai-data (0.1.29-2) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b4) ... Removing libxpm4:amd64 (1:3.5.17-1+b3) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing python3-arcp (0.2.1-7) ... Removing python3-argcomplete (3.5.3-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-markdown-it (3.0.0-2) ... Removing python3-mdurl (0.1.2-1) ... Removing python3-more-itertools (10.6.0-1) ... Removing python3-packaging (24.2-1) ... Removing python3-pygments (2.18.0+dfsg-2) ... Removing python3-spython (0.3.13-2) ... Removing python3-typing-extensions (4.12.2-2) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing python3-schema-salad (8.8.20241206093842-2) ... Removing python3-cachecontrol (0.14.2-1) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing python3-certifi (2024.12.14+ds-1) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing python3-ruamel.yaml (0.18.10+ds-1) ... Removing python3-ruamel.yaml.clib (0.2.12+ds-1) ... Removing python3-rdflib (7.1.1-2) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing openssl (3.4.0-2) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.0-1+b1) ... Removing python3-filelock (3.16.1-1) ... Removing python3-idna (3.8-2) ... Removing python3-mistune (3.0.2-2) ... Removing python3-msgpack (1.0.3-3+b3) ... Removing python3-mypy-extensions (1.0.0-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-urllib3 (2.3.0-1) ... Removing python3 (3.13.1-2) ... Removing python3.13 (3.13.1-3) ... Removing python3-minimal (3.13.1-2) ... Removing python3.13-minimal (3.13.1-3) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libpython3-stdlib:amd64 (3.13.1-2) ... Removing libpython3.13-stdlib:amd64 (3.13.1-3) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.6-1) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libpython3.13-minimal:amd64 (3.13.1-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-6) ... Removing libheif1:amd64 (1.19.5-1+b1) ... Removing libheif-plugin-libde265:amd64 (1.19.5-1+b1) ... Removing libde265-0:amd64 (1.0.15-1+b2) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libheif-plugin-dav1d:amd64 (1.19.5-1+b1) ... Removing libdav1d7:amd64 (1.5.1-1) ... Processing triggers for libc-bin (2.40-6) ... 1m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'remove', 'ca-certificates', 'cwl-upgrader', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'graphviz', 'libabsl20230802:amd64', 'libann0', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'liblab-gamut1:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsvtav1enc2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6t64:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'x11-common', 'cwltool'] 1m50.1s INFO: Running scripts post_remove 1m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_remove_exceptions'] 1m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_remove_exceptions'] 1m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'graphviz', 'libabsl20230802:amd64', 'libann0', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'liblab-gamut1:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsvtav1enc2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6t64:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'x11-common'] 1m50.5s DUMP: (Reading database ... 5077 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cwl-upgrader which isn't installed Purging configuration files for fontconfig (2.15.0-2) ... Purging configuration files for fontconfig-config (2.15.0-2) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed Purging configuration files for graphviz (2.42.4-2+b4) ... dpkg: warning: ignoring request to remove libabsl20230802 which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libavif16 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgcrypt20 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.82.4-2) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgts-0.7-5t64 which isn't installed Purging configuration files for libgvc6 (2.42.4-2+b4) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.1-3) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove librav1e0.7 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc2 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.4.0-2) ... Purging configuration files for python3 (3.13.1-2) ... dpkg: warning: ignoring request to remove python3-arcp which isn't installed Purging configuration files for python3-argcomplete (3.5.3-1) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-coloredlogs which isn't installed dpkg: warning: ignoring request to remove python3-cwl-utils which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-humanfriendly which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-markdown-it which isn't installed dpkg: warning: ignoring request to remove python3-mdurl which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mistune which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-msgpack which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pydot which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rich which isn't installed dpkg: warning: ignoring request to remove python3-rich-argparse which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-spython which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.1-3) ... Purging configuration files for readline-common (8.2-6) ... Purging configuration files for x11-common (1:7.7+24) ... 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'graphviz', 'libabsl20230802:amd64', 'libann0', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcdt5:amd64', 'libcgraph6:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgts-0.7-5t64:amd64', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'liblab-gamut1:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsvtav1enc2:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6t64:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-autocommand', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'x11-common'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--purge', 'cwltool'] 1m50.5s DUMP: dpkg: warning: ignoring request to remove cwltool which isn't installed 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--purge', 'cwltool'] 1m50.5s INFO: Running scripts post_purge 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_purge_exceptions'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_purge_exceptions'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--purge', '--pending'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--purge', '--pending'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--remove', '--pending'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg', '--remove', '--pending'] 1m50.5s INFO: Running scripts post_test 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_test_exceptions'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'tmp/scripts/post_test_exceptions'] 1m50.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m51.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg-divert', '--list'] 1m51.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'dpkg-divert', '--list'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'clean'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q', 'apt-get', 'clean'] 1m51.0s DEBUG: Recording chroot state 1m51.9s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 1m52.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/shm'] 1m52.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/shm'] 1m52.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/console'] 1m52.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/console'] 1m52.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/ptmx'] 1m52.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/ptmx'] 1m52.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/pts'] 1m52.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/dev/pts'] 1m52.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/proc'] 1m52.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q/proc'] 1m52.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m52.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpigm_pu1q'] 1m52.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpigm_pu1q 1m52.6s INFO: PASS: Upgrading between Debian distributions. 1m52.6s INFO: PASS: All tests. 1m52.6s INFO: piuparts run ends. ret=0 End: 2025-01-30 15:54:20 GMT