Start: 2025-01-29 16:19:47 GMT [testing] Package: density-fitness Version: 1.0.12-2 Installed-Size: 5862 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.38), libcifpp7 (>= 7.0.7), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo3 (>= 3.1.5), libstdc++6 (>= 13.1), libzeep5.1 (>= 5.1.8), zlib1g (>= 1:1.2.3.4) Description: Calculates per-residue electron density scores Homepage: https://github.com/PDB-REDO/density-fitness Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.0.12-2_amd64.deb Size: 494024 MD5sum: 844f86db0ab1455f57b17b700ce7b608 SHA256: 26b9a2df131f3101bcc625f52de163c00ac8f0c568c980b43ed1fbe7d1d0ad30 [sid] Package: density-fitness Version: 1.1.2-1 Installed-Size: 5869 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.38), libcifpp7 (>= 7.0.9), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo3 (>= 3.2.1), libstdc++6 (>= 13.1), libzeep5.1 (>= 5.1.8), zlib1g (>= 1:1.2.3.4) Description: Calculates per-residue electron density scores Homepage: https://github.com/PDB-REDO/density-fitness Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.1.2-1_amd64.deb Size: 494568 MD5sum: a448a95ee7ad266f2851a05863e085df SHA256: 5ea5cfd3a847e29b974ce3d50c342232097cbc6660179ec712865109139cac21 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt density-fitness=1.1.2-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt density-fitness=1.1.2-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5l36_vtu 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5l36_vtu 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5l36_vtu/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'update'] 0m2.1s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [175 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9410 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6314 kB] Fetched 15.9 MB in 1s (14.9 MB/s) Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libsystemd0 libudev1 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4044 kB of archives. After this operation, 49.2 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.40-6 [2816 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.40-6 [631 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 257.2-3 [450 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 257.2-3 [149 kB] Preconfiguring packages ... Fetched 4044 kB in 0s (57.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libc6_2.40-6_amd64.deb ... Unpacking libc6:amd64 (2.40-6) over (2.40-5) ... Setting up libc6:amd64 (2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libc-bin_2.40-6_amd64.deb ... Unpacking libc-bin (2.40-6) over (2.40-5) ... Setting up libc-bin (2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libsystemd0_257.2-3_amd64.deb ... Unpacking libsystemd0:amd64 (257.2-3) over (257.2-1) ... Setting up libsystemd0:amd64 (257.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5029 files and directories currently installed.) Preparing to unpack .../libudev1_257.2-3_amd64.deb ... Unpacking libudev1:amd64 (257.2-3) over (257.2-1) ... Setting up libudev1:amd64 (257.2-3) ... Processing triggers for libc-bin (2.40-6) ... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s DUMP: b975499319944f6e48d3b683e7baa980 - 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s INFO: Running scripts post_setup 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DUMP: install ok installed apt apt 2.9.23 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-1 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-12 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.23 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-12 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-4 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-1 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-12 install ok installed libsystemd0:amd64 libsystemd0 257.2-3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257.2-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-1 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.4-1 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2024b-6 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m5.6s INFO: Running scripts is_testable 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s INFO: Running scripts pre_test 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_test_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_test_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_test_root_password'] 0m5.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_test_root_password'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m5.9s DUMP: Package: density-fitness Version: 1.0.12-2 Installed-Size: 5862 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.38), libcifpp7 (>= 7.0.7), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo3 (>= 3.1.5), libstdc++6 (>= 13.1), libzeep5.1 (>= 5.1.8), zlib1g (>= 1:1.2.3.4) Description-en: Calculates per-residue electron density scores The program density-fitness calculates electron density metrics, for main- (includes C? atom) and side-chain atoms of individual residues. . For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data. . This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients. Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Homepage: https://github.com/PDB-REDO/density-fitness Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.0.12-2_amd64.deb Size: 494024 MD5sum: 844f86db0ab1455f57b17b700ce7b608 SHA256: 26b9a2df131f3101bcc625f52de163c00ac8f0c568c980b43ed1fbe7d1d0ad30 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m5.9s INFO: apt-cache knows about the following packages: density-fitness 0m5.9s INFO: Running scripts pre_install 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy'] 0m6.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy', 'density-fitness'] 0m6.1s DUMP: density-fitness: Installed: (none) Candidate: 1.0.12-2 Version table: 1.0.12-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy', 'density-fitness'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-y', 'install', 'density-fitness'] 0m13.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser ibverbs-providers libamd-comgr2 libamdhip64-5 libatomic1 libccp4-data libccp4c0t64 libcifpp-data libcifpp7 libclipper2 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libicu72 libllvm17t64 libmmdb2-0 libmunge2 libnewuoa0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpdb-redo3 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 libzeep5.1 ocl-icd-libopencl1 sfftw2 Suggested packages: liblocale-gettext-perl perl cron quota libhwloc-contrib-plugins pciutils opencl-icd mpi-defaults-bin sfftw-dev The following NEW packages will be installed: adduser density-fitness ibverbs-providers libamd-comgr2 libamdhip64-5 libatomic1 libccp4-data libccp4c0t64 libcifpp-data libcifpp7 libclipper2 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libicu72 libllvm17t64 libmmdb2-0 libmunge2 libnewuoa0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpdb-redo3 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 libzeep5.1 ocl-icd-libopencl1 sfftw2 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 78.2 MB of archives. After this operation, 343 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libcifpp-data all 7.0.7-3 [484 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libcifpp7 amd64 7.0.7-3 [1027 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libccp4-data all 8.0.0-4 [62.7 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libccp4c0t64 amd64 8.0.0-4 [89.9 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libmmdb2-0 amd64 2.0.22-1+b2 [342 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 55.0-1 [62.2 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 55.0-1 [351 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-12 [9300 B] Get:14 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 55.0-1 [70.2 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.6-1 [652 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-20+b1 [23.6 MB] Get:38 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get:39 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:40 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 5.7.1-3 [510 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-12 [137 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 55.0-1 [28.5 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 55.0-1 [43.3 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libopenmpi40 amd64 5.0.6-3 [2360 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 sfftw2 amd64 2.1.5-7+b1 [254 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libclipper2 amd64 2.1.20201109-2+b3 [1183 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libnewuoa0 amd64 0.1.2-1 [18.6 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libpdb-redo3 amd64 3.1.5-5 [325 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libzeep5.1 amd64 5.1.8-1+b1 [619 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 density-fitness amd64 1.0.12-2 [494 kB] Preconfiguring packages ... Fetched 78.2 MB in 1s (91.9 MB/s) Selecting previously unselected package adduser. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5033 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package libcifpp-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5104 files and directories currently installed.) Preparing to unpack .../00-libcifpp-data_7.0.7-3_all.deb ... Unpacking libcifpp-data (7.0.7-3) ... Selecting previously unselected package libcifpp7:amd64. Preparing to unpack .../01-libcifpp7_7.0.7-3_amd64.deb ... Unpacking libcifpp7:amd64 (7.0.7-3) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../02-libccp4-data_8.0.0-4_all.deb ... Unpacking libccp4-data (8.0.0-4) ... Selecting previously unselected package libccp4c0t64:amd64. Preparing to unpack .../03-libccp4c0t64_8.0.0-4_amd64.deb ... Unpacking libccp4c0t64:amd64 (8.0.0-4) ... Selecting previously unselected package libmmdb2-0:amd64. Preparing to unpack .../04-libmmdb2-0_2.0.22-1+b2_amd64.deb ... Unpacking libmmdb2-0:amd64 (2.0.22-1+b2) ... Selecting previously unselected package libevent-core-2.1-7t64:amd64. Preparing to unpack .../05-libevent-core-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. Preparing to unpack .../06-libevent-pthreads-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../07-libnl-3-200_3.7.0-0.3+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-0.3+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../08-libnl-route-3-200_3.7.0-0.3+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../09-libibverbs1_55.0-1_amd64.deb ... Unpacking libibverbs1:amd64 (55.0-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../10-ibverbs-providers_55.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (55.0-1) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../11-libatomic1_14.2.0-12_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-12) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../12-libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../13-libnuma1_2.0.18-1+b1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.18-1+b1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../14-libpsm2-2_11.2.185-2.1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2.1) ... Selecting previously unselected package librdmacm1t64:amd64. Preparing to unpack .../15-librdmacm1t64_55.0-1_amd64.deb ... Unpacking librdmacm1t64:amd64 (55.0-1) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../16-libfabric1_1.17.0-3.1_amd64.deb ... Unpacking libfabric1:amd64 (1.17.0-3.1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../17-libhwloc15_2.11.2-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.11.2-1) ... Selecting previously unselected package libmunge2:amd64. Preparing to unpack .../18-libmunge2_0.5.15-4+b1_amd64.deb ... Unpacking libmunge2:amd64 (0.5.15-4+b1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../19-libpciaccess0_0.17-3+b3_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3+b3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../20-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../21-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../22-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../23-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../24-libx11-6_2%3a1.8.10-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.10-2) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../27-libxext6_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../28-libxnvctrl0_535.171.04-1+b2_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1+b2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../29-ocl-icd-libopencl1_2.3.2-1+b2_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../30-libhwloc-plugins_2.11.2-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... Selecting previously unselected package libpmix2t64:amd64. Preparing to unpack .../31-libpmix2t64_5.0.6-1_amd64.deb ... Unpacking libpmix2t64:amd64 (5.0.6-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../32-libedit2_3.1-20250104-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20250104-1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../33-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../34-libz3-4_4.13.3-1_amd64.deb ... Unpacking libz3-4:amd64 (4.13.3-1) ... Selecting previously unselected package libllvm17t64:amd64. Preparing to unpack .../35-libllvm17t64_1%3a17.0.6-20+b1_amd64.deb ... Unpacking libllvm17t64:amd64 (1:17.0.6-20+b1) ... Selecting previously unselected package libamd-comgr2:amd64. Preparing to unpack .../36-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b2_amd64.deb ... Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../37-libdrm-common_2.4.123-1_all.deb ... Unpacking libdrm-common (2.4.123-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../38-libdrm2_2.4.123-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../39-libdrm-amdgpu1_2.4.123-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../40-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package libhsakmt1:amd64. Preparing to unpack .../41-libhsakmt1_5.7.0-1_amd64.deb ... Unpacking libhsakmt1:amd64 (5.7.0-1) ... Selecting previously unselected package libhsa-runtime64-1:amd64. Preparing to unpack .../42-libhsa-runtime64-1_5.7.1-3_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (5.7.1-3) ... Selecting previously unselected package libamdhip64-5. Preparing to unpack .../43-libamdhip64-5_5.7.1-5_amd64.deb ... Unpacking libamdhip64-5 (5.7.1-5) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../44-libgomp1_14.2.0-12_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-12) ... Selecting previously unselected package libibumad3:amd64. Preparing to unpack .../45-libibumad3_55.0-1_amd64.deb ... Unpacking libibumad3:amd64 (55.0-1) ... Selecting previously unselected package libibmad5:amd64. Preparing to unpack .../46-libibmad5_55.0-1_amd64.deb ... Unpacking libibmad5:amd64 (55.0-1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../47-libucx0_1.17.0+ds-3_amd64.deb ... Unpacking libucx0:amd64 (1.17.0+ds-3) ... Selecting previously unselected package libopenmpi40:amd64. Preparing to unpack .../48-libopenmpi40_5.0.6-3_amd64.deb ... Unpacking libopenmpi40:amd64 (5.0.6-3) ... Selecting previously unselected package sfftw2. Preparing to unpack .../49-sfftw2_2.1.5-7+b1_amd64.deb ... Unpacking sfftw2 (2.1.5-7+b1) ... Selecting previously unselected package libclipper2:amd64. Preparing to unpack .../50-libclipper2_2.1.20201109-2+b3_amd64.deb ... Unpacking libclipper2:amd64 (2.1.20201109-2+b3) ... Selecting previously unselected package libnewuoa0. Preparing to unpack .../51-libnewuoa0_0.1.2-1_amd64.deb ... Unpacking libnewuoa0 (0.1.2-1) ... Selecting previously unselected package libpdb-redo3. Preparing to unpack .../52-libpdb-redo3_3.1.5-5_amd64.deb ... Unpacking libpdb-redo3 (3.1.5-5) ... Selecting previously unselected package libzeep5.1. Preparing to unpack .../53-libzeep5.1_5.1.8-1+b1_amd64.deb ... Unpacking libzeep5.1 (5.1.8-1+b1) ... Selecting previously unselected package density-fitness. Preparing to unpack .../54-density-fitness_1.0.12-2_amd64.deb ... Unpacking density-fitness (1.0.12-2) ... Setting up libpciaccess0:amd64 (0.17-3+b3) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up libmmdb2-0:amd64 (2.0.22-1+b2) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libibumad3:amd64 (55.0-1) ... Setting up libibmad5:amd64 (55.0-1) ... Setting up libccp4-data (8.0.0-4) ... Setting up libnewuoa0 (0.1.2-1) ... Setting up libgomp1:amd64 (14.2.0-12) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libmunge2:amd64 (0.5.15-4+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libhwloc15:amd64 (2.11.2-1) ... Setting up libatomic1:amd64 (14.2.0-12) ... Setting up libcifpp-data (7.0.7-3) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libccp4c0t64:amd64 (8.0.0-4) ... Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libzeep5.1 (5.1.8-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libcifpp7:amd64 (7.0.7-3) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libllvm17t64:amd64 (1:17.0.6-20+b1) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libibverbs1:amd64 (55.0-1) ... Setting up ibverbs-providers:amd64 (55.0-1) ... Setting up libhwloc-plugins:amd64 (2.11.2-1) ... Setting up libpmix2t64:amd64 (5.0.6-1) ... Setting up librdmacm1t64:amd64 (55.0-1) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libfabric1:amd64 (1.17.0-3.1) ... Setting up libhsa-runtime64-1:amd64 (5.7.1-3) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libopenmpi40:amd64 (5.0.6-3) ... Setting up sfftw2 (2.1.5-7+b1) ... Setting up libclipper2:amd64 (2.1.20201109-2+b3) ... Setting up libpdb-redo3 (3.1.5-5) ... Setting up density-fitness (1.0.12-2) ... Processing triggers for libc-bin (2.40-6) ... 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-y', 'install', 'density-fitness'] 0m13.3s INFO: Running scripts post_install 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_install_exceptions'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_install_exceptions'] 0m13.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m13.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m13.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp5l36_vtu to sid 0m13.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m13.7s INFO: Running scripts pre_distupgrade 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'update'] 0m17.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7343 kB] Fetched 17.6 MB in 3s (5908 kB/s) Reading package lists... 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'update'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-yf', 'dist-upgrade'] 0m23.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bsdutils density-fitness dpkg gcc-14-base libapt-pkg6.0t64 libatomic1 libblkid1 libcifpp-data libcifpp7 libgcc-s1 libgomp1 libhsa-runtime64-1 libhsakmt1 libllvm17t64 liblz4-1 libmount1 libpdb-redo3 libselinux1 libsemanage-common libsemanage2 libsmartcols1 libstdc++6 libuuid1 libxxhash0 login mount tzdata util-linux 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 34.3 MB of archives. After this operation, 468 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.4-2 [106 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-15 [9280 B] Get:3 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-15 [137 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-15 [48.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-15 [72.7 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-15 [713 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.10.0-3 [63.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.26 [1115 kB] Get:10 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.14 [1537 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.4-2 [36.3 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.4-2 [169 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.4-2 [199 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.4-2 [140 kB] Get:15 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.4-2 [1213 kB] Get:16 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.4-2 [155 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.7-3.1 [76.8 kB] Get:18 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.26 [1433 kB] Get:19 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.4-2 [88.4 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.7-2.1 [7208 B] Get:21 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.7-2.1 [91.2 kB] Get:22 http://deb.debian.org/debian sid/main amd64 tzdata all 2025a-1 [259 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libcifpp-data all 7.0.9-1 [484 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libcifpp7 amd64 7.0.9-1 [1032 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libpdb-redo3 amd64 3.2.1-1 [330 kB] Get:26 http://deb.debian.org/debian sid/main amd64 density-fitness amd64 1.1.2-1 [495 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libhsakmt1 amd64 6.1.2+ds-1 [59.8 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libhsa-runtime64-1 amd64 6.1.2-2 [535 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libllvm17t64 amd64 1:17.0.6-20+b2 [23.6 MB] Preconfiguring packages ... Fetched 34.3 MB in 1s (53.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5908 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.4-2_amd64.deb ... Unpacking bsdutils (1:2.40.4-2) over (1:2.40.4-1) ... Setting up bsdutils (1:2.40.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5908 files and directories currently installed.) Preparing to unpack .../libatomic1_14.2.0-15_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-15) over (14.2.0-12) ... Preparing to unpack .../libgomp1_14.2.0-15_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-15) over (14.2.0-12) ... Preparing to unpack .../gcc-14-base_14.2.0-15_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-15) over (14.2.0-12) ... Setting up gcc-14-base:amd64 (14.2.0-15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5908 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-15_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-15) over (14.2.0-12) ... Setting up libgcc-s1:amd64 (14.2.0-15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5908 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-15_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-15) over (14.2.0-12) ... Setting up libstdc++6:amd64 (14.2.0-15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5908 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.3-2_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.3-2) over (0.8.2-2+b2) ... Setting up libxxhash0:amd64 (0.8.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5907 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.10.0-3_amd64.deb ... Unpacking liblz4-1:amd64 (1.10.0-3) over (1.9.4-4) ... Setting up liblz4-1:amd64 (1.10.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5907 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.26_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.26) over (2.9.23) ... Setting up libapt-pkg6.0t64:amd64 (2.9.26) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5907 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.14_amd64.deb ... Unpacking dpkg (1.22.14) over (1.22.11) ... Setting up dpkg (1.22.14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5906 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.4-2_amd64.deb ... Unpacking libuuid1:amd64 (2.40.4-2) over (2.40.4-1) ... Setting up libuuid1:amd64 (2.40.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5906 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.4-2_amd64.deb ... Unpacking libblkid1:amd64 (2.40.4-2) over (2.40.4-1) ... Setting up libblkid1:amd64 (2.40.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5906 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.4-2_amd64.deb ... Unpacking libmount1:amd64 (2.40.4-2) over (2.40.4-1) ... Setting up libmount1:amd64 (2.40.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5906 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.4-2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.4-2) over (2.40.4-1) ... Setting up libsmartcols1:amd64 (2.40.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5906 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.4-2_amd64.deb ... Unpacking util-linux (2.40.4-2) over (2.40.4-1) ... Setting up util-linux (2.40.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5906 files and directories currently installed.) Preparing to unpack .../mount_2.40.4-2_amd64.deb ... Unpacking mount (2.40.4-2) over (2.40.4-1) ... Preparing to unpack .../libselinux1_3.7-3.1_amd64.deb ... Unpacking libselinux1:amd64 (3.7-3.1) over (3.7-3+b1) ... Setting up libselinux1:amd64 (3.7-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5905 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.26_amd64.deb ... Unpacking apt (2.9.26) over (2.9.23) ... Setting up apt (2.9.26) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5905 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.4-2_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.4-2) over (1:4.16.0-2+really2.40.4-1) ... Preparing to unpack .../libsemanage-common_3.7-2.1_all.deb ... Unpacking libsemanage-common (3.7-2.1) over (3.7-2) ... Setting up libsemanage-common (3.7-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5905 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.7-2.1_amd64.deb ... Unpacking libsemanage2:amd64 (3.7-2.1) over (3.7-2+b1) ... Setting up libsemanage2:amd64 (3.7-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5904 files and directories currently installed.) Preparing to unpack .../0-tzdata_2025a-1_all.deb ... Unpacking tzdata (2025a-1) over (2024b-6) ... Preparing to unpack .../1-libcifpp-data_7.0.9-1_all.deb ... Unpacking libcifpp-data (7.0.9-1) over (7.0.7-3) ... Preparing to unpack .../2-libcifpp7_7.0.9-1_amd64.deb ... Unpacking libcifpp7:amd64 (7.0.9-1) over (7.0.7-3) ... Preparing to unpack .../3-libpdb-redo3_3.2.1-1_amd64.deb ... Unpacking libpdb-redo3 (3.2.1-1) over (3.1.5-5) ... Preparing to unpack .../4-density-fitness_1.1.2-1_amd64.deb ... Unpacking density-fitness (1.1.2-1) over (1.0.12-2) ... Preparing to unpack .../5-libhsakmt1_6.1.2+ds-1_amd64.deb ... Unpacking libhsakmt1:amd64 (6.1.2+ds-1) over (5.7.0-1) ... Preparing to unpack .../6-libhsa-runtime64-1_6.1.2-2_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (6.1.2-2) over (5.7.1-3) ... Preparing to unpack .../7-libllvm17t64_1%3a17.0.6-20+b2_amd64.deb ... Unpacking libllvm17t64:amd64 (1:17.0.6-20+b2) over (1:17.0.6-20+b1) ... Setting up libgomp1:amd64 (14.2.0-15) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 29 16:20:10 UTC 2025. Universal Time is now: Wed Jan 29 16:20:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libllvm17t64:amd64 (1:17.0.6-20+b2) ... Setting up libatomic1:amd64 (14.2.0-15) ... Setting up libcifpp-data (7.0.9-1) ... Setting up mount (2.40.4-2) ... Setting up libhsakmt1:amd64 (6.1.2+ds-1) ... Setting up login (1:4.16.0-2+really2.40.4-2) ... Setting up libcifpp7:amd64 (7.0.9-1) ... Setting up libpdb-redo3 (3.2.1-1) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ... Setting up density-fitness (1.1.2-1) ... Processing triggers for libc-bin (2.40-6) ... 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-yf', 'dist-upgrade'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.5s DUMP: 3b60eec026c1278a8ba6a631197d9dbb - 0m24.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m24.7s DUMP: Package: density-fitness Version: 1.1.2-1 Installed-Size: 5869 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.38), libcifpp7 (>= 7.0.9), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo3 (>= 3.2.1), libstdc++6 (>= 13.1), libzeep5.1 (>= 5.1.8), zlib1g (>= 1:1.2.3.4) Description-en: Calculates per-residue electron density scores The program density-fitness calculates electron density metrics, for main- (includes C? atom) and side-chain atoms of individual residues. . For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data. . This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients. Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Homepage: https://github.com/PDB-REDO/density-fitness Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.1.2-1_amd64.deb Size: 494568 MD5sum: a448a95ee7ad266f2851a05863e085df SHA256: 5ea5cfd3a847e29b974ce3d50c342232097cbc6660179ec712865109139cac21 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m24.7s INFO: apt-cache knows about the following packages: density-fitness 0m24.7s INFO: Running scripts pre_install 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_database-server'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_database-server'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_exceptions'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_extras'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_extras'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy'] 0m24.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy', 'density-fitness'] 0m24.9s DUMP: density-fitness: Installed: 1.1.2-1 Candidate: 1.1.2-1 Version table: *** 1.1.2-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy', 'density-fitness'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-y', 'install', 'density-fitness'] 0m25.4s DUMP: Reading package lists... Building dependency tree... Reading state information... density-fitness is already the newest version (1.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-y', 'install', 'density-fitness'] 0m25.4s INFO: Running scripts post_install 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_install_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_install_exceptions'] 0m25.4s INFO: Running scripts post_distupgrade 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m25.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m25.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m26.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m26.2s INFO: Running scripts pre_install 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_database-server'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_database-server'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_exceptions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_exceptions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_extras'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_extras'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy'] 0m26.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy', 'density-fitness'] 0m26.3s DUMP: density-fitness: Installed: 1.1.2-1 Candidate: 1.1.2-1 Version table: *** 1.1.2-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-cache', 'policy', 'density-fitness'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-y', 'install', 'density-fitness=1.1.2-1'] 0m26.7s DUMP: Reading package lists... Building dependency tree... Reading state information... density-fitness is already the newest version (1.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', '-y', 'install', 'density-fitness=1.1.2-1'] 0m26.7s INFO: Running scripts post_install 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_install_exceptions'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_install_exceptions'] 0m26.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m27.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m27.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', '-ac', '--ignore-obsolete'] 0m28.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', '-ac', '--ignore-obsolete'] 0m28.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.6s DUMP: 0.15.6 0m28.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m28.6s INFO: Running adequate version 0.15.6 now. 0m28.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'density-fitness'] 0m28.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'density-fitness'] 0m28.7s INFO: Running scripts pre_remove 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/pre_remove_exceptions'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.1s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.26 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-2 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-11 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed density-fitness density-fitness 1.1.2-1 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.14 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-15 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 55.0-1 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libamd-comgr2:amd64 libamd-comgr2 6.0+git20231212.4510c28+dfsg-3+b2 install ok installed libamdhip64-5 libamdhip64-5 5.7.1-5 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.26 install ok installed libatomic1:amd64 libatomic1 14.2.0-15 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-2 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-6 install ok installed libc6:amd64 libc6 2.40-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libccp4-data libccp4-data 8.0.0-4 install ok installed libccp4c0t64:amd64 libccp4c0t64 8.0.0-4 install ok installed libcifpp-data libcifpp-data 7.0.9-1 install ok installed libcifpp7:amd64 libcifpp7 7.0.9-1 install ok installed libclipper2:amd64 libclipper2 2.1.20201109-2+b3 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.123-1 install ok installed libdrm-common libdrm-common 2.4.123-1 install ok installed libdrm2:amd64 libdrm2 2.4.123-1 install ok installed libedit2:amd64 libedit2 3.1-20250104-1 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.12-stable-10+b1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.12-stable-10+b1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libfabric1:amd64 libfabric1 1.17.0-3.1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-15 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgomp1:amd64 libgomp1 14.2.0-15 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.1.2-2 install ok installed libhsakmt1:amd64 libhsakmt1 6.1.2+ds-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.11.2-1 install ok installed libhwloc15:amd64 libhwloc15 2.11.2-1 install ok installed libibmad5:amd64 libibmad5 55.0-1 install ok installed libibumad3:amd64 libibumad3 55.0-1 install ok installed libibverbs1:amd64 libibverbs1 55.0-1 install ok installed libicu72:amd64 libicu72 72.1-6 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-20+b2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmmdb2-0:amd64 libmmdb2-0 2.0.22-1+b2 install ok installed libmount1:amd64 libmount1 2.40.4-2 install ok installed libmunge2:amd64 libmunge2 0.5.15-4+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnewuoa0 libnewuoa0 0.1.2-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.3+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.3+b1 install ok installed libnuma1:amd64 libnuma1 2.0.18-1+b1 install ok installed libopenmpi40:amd64 libopenmpi40 5.0.6-3 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libpdb-redo3 libpdb-redo3 3.2.1-1 install ok installed libpmix2t64:amd64 libpmix2t64 5.0.6-1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.3 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed librdmacm1t64:amd64 librdmacm1t64 55.0-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3.1 install ok installed libsemanage-common libsemanage-common 3.7-2.1 install ok installed libsemanage2:amd64 libsemanage2 3.7-2.1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-2 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.0-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-15 install ok installed libsystemd0:amd64 libsystemd0 257.2-3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libucx0:amd64 libucx0 1.17.0+ds-3 install ok installed libudev1:amd64 libudev1 257.2-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-2 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libzeep5.1 libzeep5.1 5.1.8-1+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-2 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.4-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1+b2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.0-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sfftw2 sfftw2 2.1.5-7+b1 install ok installed sqv sqv 1.2.1-5 install ok installed sysvinit-utils sysvinit-utils 3.13-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-1 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'remove', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libccp4-data', 'libccp4c0t64:amd64', 'libcifpp-data', 'libcifpp7:amd64', 'libclipper2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libllvm17t64:amd64', 'libmmdb2-0:amd64', 'libmunge2:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpdb-redo3', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libzeep5.1', 'ocl-icd-libopencl1:amd64', 'sfftw2', 'density-fitness'] 0m31.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser density-fitness ibverbs-providers libamd-comgr2 libamdhip64-5 libatomic1 libccp4-data libccp4c0t64 libcifpp-data libcifpp7 libclipper2 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libicu72 libllvm17t64 libmmdb2-0 libmunge2 libnewuoa0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpdb-redo3 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 libzeep5.1 ocl-icd-libopencl1 sfftw2 0 upgraded, 0 newly installed, 56 to remove and 0 not upgraded. After this operation, 343 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5904 files and directories currently installed.) Removing density-fitness (1.1.2-1) ... Removing libpdb-redo3 (3.2.1-1) ... Removing libclipper2:amd64 (2.1.20201109-2+b3) ... Removing sfftw2 (2.1.5-7+b1) ... Removing libopenmpi40:amd64 (5.0.6-3) ... Removing libucx0:amd64 (1.17.0+ds-3) ... Removing libfabric1:amd64 (1.17.0-3.1) ... Removing ibverbs-providers:amd64 (55.0-1) ... Removing librdmacm1t64:amd64 (55.0-1) ... Removing libibverbs1:amd64 (55.0-1) ... Removing adduser (3.137) ... Removing libamdhip64-5 (5.7.1-5) ... Removing libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Removing libatomic1:amd64 (14.2.0-15) ... Removing libccp4c0t64:amd64 (8.0.0-4) ... Removing libccp4-data (8.0.0-4) ... Removing libcifpp7:amd64 (7.0.9-1) ... Removing libcifpp-data (7.0.9-1) ... Removing libhsa-runtime64-1:amd64 (6.1.2-2) ... Removing libhsakmt1:amd64 (6.1.2+ds-1) ... Removing libdrm-amdgpu1:amd64 (2.4.123-1) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libllvm17t64:amd64 (1:17.0.6-20+b2) ... Removing libedit2:amd64 (3.1-20250104-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libpmix2t64:amd64 (5.0.6-1) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing libffi8:amd64 (3.4.6-1) ... Removing libgomp1:amd64 (14.2.0-15) ... Removing libhwloc-plugins:amd64 (2.11.2-1) ... Removing libhwloc15:amd64 (2.11.2-1) ... Removing libibmad5:amd64 (55.0-1) ... Removing libibumad3:amd64 (55.0-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libicu72:amd64 (72.1-6) ... Removing libmmdb2-0:amd64 (2.0.22-1+b2) ... Removing libmunge2:amd64 (0.5.15-4+b1) ... Removing libnewuoa0 (0.1.2-1) ... Removing libnl-route-3-200:amd64 (3.7.0-0.3+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.3+b1) ... Removing libpsm2-2 (11.2.185-2.1) ... Removing libnuma1:amd64 (2.0.18-1+b1) ... Removing libpciaccess0:amd64 (0.17-3+b3) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libxnvctrl0:amd64 (535.171.04-1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing libzeep5.1 (5.1.8-1+b1) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Processing triggers for libc-bin (2.40-6) ... 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'remove', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libccp4-data', 'libccp4c0t64:amd64', 'libcifpp-data', 'libcifpp7:amd64', 'libclipper2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libllvm17t64:amd64', 'libmmdb2-0:amd64', 'libmunge2:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpdb-redo3', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libzeep5.1', 'ocl-icd-libopencl1:amd64', 'sfftw2', 'density-fitness'] 0m31.3s INFO: Running scripts post_remove 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_remove_exceptions'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_remove_exceptions'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--purge', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libccp4-data', 'libccp4c0t64:amd64', 'libcifpp-data', 'libcifpp7:amd64', 'libclipper2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libllvm17t64:amd64', 'libmmdb2-0:amd64', 'libmunge2:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpdb-redo3', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libzeep5.1', 'ocl-icd-libopencl1:amd64', 'sfftw2'] 0m31.4s DUMP: (Reading database ... 5054 files and directories currently installed.) Purging configuration files for adduser (3.137) ... Purging configuration files for ibverbs-providers:amd64 (55.0-1) ... dpkg: warning: ignoring request to remove libamd-comgr2 which isn't installed dpkg: warning: ignoring request to remove libamdhip64-5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libccp4-data which isn't installed dpkg: warning: ignoring request to remove libccp4c0t64 which isn't installed Purging configuration files for libcifpp-data (7.0.9-1) ... dpkg: warning: ignoring request to remove libcifpp7 which isn't installed dpkg: warning: ignoring request to remove libclipper2 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhsa-runtime64-1 which isn't installed dpkg: warning: ignoring request to remove libhsakmt1 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibmad5 which isn't installed dpkg: warning: ignoring request to remove libibumad3 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libllvm17t64 which isn't installed dpkg: warning: ignoring request to remove libmmdb2-0 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libnewuoa0 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.3+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi40 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpdb-redo3 which isn't installed dpkg: warning: ignoring request to remove libpmix2t64 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.3) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1t64 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libzeep5.1 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove sfftw2 which isn't installed 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--purge', 'adduser', 'ibverbs-providers:amd64', 'libamd-comgr2:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libccp4-data', 'libccp4c0t64:amd64', 'libcifpp-data', 'libcifpp7:amd64', 'libclipper2:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libllvm17t64:amd64', 'libmmdb2-0:amd64', 'libmunge2:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpdb-redo3', 'libpmix2t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1t64:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libzeep5.1', 'ocl-icd-libopencl1:amd64', 'sfftw2'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--purge', 'density-fitness'] 0m31.4s DUMP: dpkg: warning: ignoring request to remove density-fitness which isn't installed 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--purge', 'density-fitness'] 0m31.4s INFO: Running scripts post_purge 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_purge_exceptions'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_purge_exceptions'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--purge', '--pending'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--purge', '--pending'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--remove', '--pending'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg', '--remove', '--pending'] 0m31.5s INFO: Running scripts post_test 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_test_exceptions'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'tmp/scripts/post_test_exceptions'] 0m31.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m31.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg-divert', '--list'] 0m31.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'dpkg-divert', '--list'] 0m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'clean'] 0m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu', 'apt-get', 'clean'] 0m31.9s DEBUG: Recording chroot state 0m32.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/shm'] 0m32.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/shm'] 0m32.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/console'] 0m32.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/console'] 0m32.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/ptmx'] 0m32.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/ptmx'] 0m32.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/pts'] 0m33.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/dev/pts'] 0m33.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/proc'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu/proc'] 0m33.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m33.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5l36_vtu'] 0m33.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5l36_vtu 0m33.1s INFO: PASS: Upgrading between Debian distributions. 0m33.1s INFO: PASS: All tests. 0m33.1s INFO: piuparts run ends. ret=0 End: 2025-01-29 16:20:20 GMT