Start: 2022-01-20 15:50:42 GMT [testing] Package: disulfinder Version: 1.2.11-11 Installed-Size: 672 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), disulfinder-data Description: cysteines disulfide bonding state and connectivity predictor Homepage: https://disulfind.dsi.unifi.it/ Description-md5: 5f70380c76687c70f279559ee87b7d0e Tag: role::program Section: science Priority: optional Filename: pool/main/d/disulfinder/disulfinder_1.2.11-11_amd64.deb Size: 238560 MD5sum: 1e967a003d631e7759435000213e0b14 SHA256: beb52dcf5d2fd9a807bdefbb643e5e672791f2bd5ad790a37693004ffab237b7 [sid] Package: disulfinder Version: 1.2.11-12 Installed-Size: 676 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), disulfinder-data Description: cysteines disulfide bonding state and connectivity predictor Homepage: https://disulfind.dsi.unifi.it/ Description-md5: 5f70380c76687c70f279559ee87b7d0e Tag: role::program Section: science Priority: optional Filename: pool/main/d/disulfinder/disulfinder_1.2.11-12_amd64.deb Size: 238868 MD5sum: aaed1badc22cda8aff622c76982e08e0 SHA256: 45c84f2b17c5aa730fca68a6a4ae76748dfafe860f1633665f698be981c42f11 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt disulfinder=1.2.11-12 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt disulfinder=1.2.11-12 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpjobjcaaj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpjobjcaaj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpjobjcaaj/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'update'] 0m4.2s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [129 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8240 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5664 kB] Fetched 14.0 MB in 2s (9079 kB/s) Reading package lists... 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'update'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libxxhash0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 27.6 kB of archives. After this operation, 15.4 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.6 kB in 0s (1137 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.1-1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.1-1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.1-1) ... Processing triggers for libc-bin (2.33-2) ... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.5s DUMP: 98a85aa225f613f044cc7f8af0d77e54 - 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.5s INFO: Running scripts post_setup 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_minimize'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_setup_zz_backports'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-13 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-13 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-2 install ok installed libc6:amd64 libc6 2.33-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-13 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-13 install ok installed libsystemd0:amd64 libsystemd0 250.2-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.2-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-1 install ok installed ncurses-bin ncurses-bin 6.3-1 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m7.2s INFO: Running scripts is_testable 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s INFO: Running scripts pre_test 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'show', '--no-all-versions', 'disulfinder'] 0m7.4s DUMP: Package: disulfinder Version: 1.2.11-11 Installed-Size: 672 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), disulfinder-data Description-en: cysteines disulfide bonding state and connectivity predictor 'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks. . 'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern. Description-md5: 5f70380c76687c70f279559ee87b7d0e Homepage: https://disulfind.dsi.unifi.it/ Tag: role::program Section: science Priority: optional Filename: pool/main/d/disulfinder/disulfinder_1.2.11-11_amd64.deb Size: 238560 MD5sum: 1e967a003d631e7759435000213e0b14 SHA256: beb52dcf5d2fd9a807bdefbb643e5e672791f2bd5ad790a37693004ffab237b7 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'show', '--no-all-versions', 'disulfinder'] 0m7.4s INFO: apt-cache knows about the following packages: disulfinder 0m7.4s INFO: Running scripts pre_install 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_database-server'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_extras'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy'] 0m7.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy', 'disulfinder'] 0m7.6s DUMP: disulfinder: Installed: (none) Candidate: 1.2.11-11 Version table: 1.2.11-11 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy', 'disulfinder'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-y', 'install', 'disulfinder'] 0m8.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: disulfinder-data The following NEW packages will be installed: disulfinder disulfinder-data 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 1365 kB of archives. After this operation, 13.6 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 disulfinder-data all 1.2.11-11 [1127 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 disulfinder amd64 1.2.11-11 [239 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1365 kB in 0s (26.6 MB/s) Selecting previously unselected package disulfinder-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6676 files and directories currently installed.) Preparing to unpack .../disulfinder-data_1.2.11-11_all.deb ... Unpacking disulfinder-data (1.2.11-11) ... Selecting previously unselected package disulfinder. Preparing to unpack .../disulfinder_1.2.11-11_amd64.deb ... Unpacking disulfinder (1.2.11-11) ... Setting up disulfinder-data (1.2.11-11) ... Setting up disulfinder (1.2.11-11) ... 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-y', 'install', 'disulfinder'] 0m8.5s INFO: Running scripts post_install 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_install_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_install_exceptions'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m9.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m9.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpjobjcaaj to sid 0m9.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.0s INFO: Running scripts pre_distupgrade 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'update'] 0m12.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8889 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6671 kB] Fetched 15.7 MB in 3s (6031 kB/s) Reading package lists... 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'update'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-yf', 'dist-upgrade'] 0m14.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files debianutils disulfinder disulfinder-data gcc-10-base gcc-11-base libc-bin libc6 libcrypt1 libffi8 libgcc-s1 libgpg-error0 libstdc++6 libsystemd0 libtinfo6 libudev1 ncurses-base ncurses-bin 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8066 kB of archives. After this operation, 5120 B disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 12.2 [70.1 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.5-1 [93.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3-2 [439 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-14 [207 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-14 [42.0 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-14 [577 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.33-3 [2831 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.33-3 [829 kB] Get:9 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3-2 [278 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 250.3-1 [404 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.27-1.1 [89.0 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.43-3 [82.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3-2 [349 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 250.3-1 [178 kB] Get:16 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.3.0-14 [206 kB] Get:17 http://deb.debian.org/debian sid/main amd64 disulfinder-data all 1.2.11-12 [1127 kB] Get:18 http://deb.debian.org/debian sid/main amd64 disulfinder amd64 1.2.11-12 [239 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8066 kB in 0s (78.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7244 files and directories currently installed.) Preparing to unpack .../base-files_12.2_amd64.deb ... Unpacking base-files (12.2) over (12) ... Setting up base-files (12.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7244 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_amd64.deb ... Unpacking debianutils (5.5-1) over (4.11.2) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.3-2_amd64.deb ... Unpacking ncurses-bin (6.3-2) over (6.3-1) ... Setting up ncurses-bin (6.3-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-14_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-14) over (11.2.0-13) ... Setting up libgcc-s1:amd64 (11.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../libstdc++6_11.2.0-14_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-14) over (11.2.0-13) ... Setting up libstdc++6:amd64 (11.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../libc6_2.33-3_amd64.deb ... Unpacking libc6:amd64 (2.33-3) over (2.33-2) ... Setting up libc6:amd64 (2.33-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-3_amd64.deb ... Unpacking libc-bin (2.33-3) over (2.33-2) ... Setting up libc-bin (2.33-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3-2_all.deb ... Unpacking ncurses-base (6.3-2) over (6.3-1) ... Setting up ncurses-base (6.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7241 files and directories currently installed.) Preparing to unpack .../libsystemd0_250.3-1_amd64.deb ... Unpacking libsystemd0:amd64 (250.3-1) over (250.2-3) ... Setting up libsystemd0:amd64 (250.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7241 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.27-1.1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.27-1.1) over (1:4.4.27-1) ... Setting up libcrypt1:amd64 (1:4.4.27-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7241 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.2-4_amd64.deb ... Unpacking libffi8:amd64 (3.4.2-4) over (3.4.2-3) ... Setting up libffi8:amd64 (3.4.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7241 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.43-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.43-3) over (1.43-1) ... Setting up libgpg-error0:amd64 (1.43-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7241 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.3-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3-2) over (6.3-1) ... Setting up libtinfo6:amd64 (6.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../libudev1_250.3-1_amd64.deb ... Unpacking libudev1:amd64 (250.3-1) over (250.2-3) ... Setting up libudev1:amd64 (250.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10.3.0-14_amd64.deb ... Unpacking gcc-10-base:amd64 (10.3.0-14) over (10.3.0-13) ... Preparing to unpack .../disulfinder-data_1.2.11-12_all.deb ... Unpacking disulfinder-data (1.2.11-12) over (1.2.11-11) ... Preparing to unpack .../disulfinder_1.2.11-12_amd64.deb ... Unpacking disulfinder (1.2.11-12) over (1.2.11-11) ... Setting up disulfinder-data (1.2.11-12) ... Setting up disulfinder (1.2.11-12) ... Setting up gcc-10-base:amd64 (10.3.0-14) ... Processing triggers for libc-bin (2.33-3) ... 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-yf', 'dist-upgrade'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.0s DUMP: 56396d18fc213874f3475ed5f64072a1 - 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'show', '--no-all-versions', 'disulfinder'] 0m15.2s DUMP: Package: disulfinder Version: 1.2.11-12 Installed-Size: 676 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), disulfinder-data Description-en: cysteines disulfide bonding state and connectivity predictor 'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks. . 'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern. Description-md5: 5f70380c76687c70f279559ee87b7d0e Homepage: https://disulfind.dsi.unifi.it/ Tag: role::program Section: science Priority: optional Filename: pool/main/d/disulfinder/disulfinder_1.2.11-12_amd64.deb Size: 238868 MD5sum: aaed1badc22cda8aff622c76982e08e0 SHA256: 45c84f2b17c5aa730fca68a6a4ae76748dfafe860f1633665f698be981c42f11 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'show', '--no-all-versions', 'disulfinder'] 0m15.2s INFO: apt-cache knows about the following packages: disulfinder 0m15.2s INFO: Running scripts pre_install 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_database-server'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_database-server'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_extras'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_extras'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy'] 0m15.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy', 'disulfinder'] 0m15.4s DUMP: disulfinder: Installed: 1.2.11-12 Candidate: 1.2.11-12 Version table: *** 1.2.11-12 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy', 'disulfinder'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-y', 'install', 'disulfinder'] 0m15.7s DUMP: Reading package lists... Building dependency tree... Reading state information... disulfinder is already the newest version (1.2.11-12). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-y', 'install', 'disulfinder'] 0m15.7s INFO: Running scripts post_install 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_install_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_install_exceptions'] 0m15.8s INFO: Running scripts post_distupgrade 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m16.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m16.4s INFO: Running scripts pre_install 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy'] 0m16.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy', 'disulfinder'] 0m16.5s DUMP: disulfinder: Installed: 1.2.11-12 Candidate: 1.2.11-12 Version table: *** 1.2.11-12 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-cache', 'policy', 'disulfinder'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-y', 'install', 'disulfinder=1.2.11-12'] 0m17.0s DUMP: Reading package lists... Building dependency tree... Reading state information... disulfinder is already the newest version (1.2.11-12). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', '-y', 'install', 'disulfinder=1.2.11-12'] 0m17.0s INFO: Running scripts post_install 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_install_exceptions'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_install_exceptions'] 0m17.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m17.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m17.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', '-ac', '--ignore-obsolete'] 0m18.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', '-ac', '--ignore-obsolete'] 0m18.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.5s DUMP: 0.15.2 0m18.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.5s INFO: Running adequate version 0.15.2 now. 0m18.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'disulfinder'] 0m18.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'disulfinder'] 0m18.6s INFO: Running scripts pre_remove 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_exceptions'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/pre_remove_exceptions'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.5s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.14 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6 install ok installed bsdutils bsdutils 1:2.37.2-6 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-3 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed disulfinder disulfinder 1.2.11-12 install ok installed disulfinder-data disulfinder-data 1.2.11-12 install ok installed dpkg dpkg 1.21.1 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-14 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-14 install ok installed gpgv gpgv 2.2.27-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.61 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.14 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1+b1 install ok installed libblkid1:amd64 libblkid1 2.37.2-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.33-3 install ok installed libc6:amd64 libc6 2.33-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.27-1.1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.261 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.43-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-6 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-6 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-11 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-11 install ok installed libpam-runtime libpam-runtime 1.4.0-11 install ok installed libpam0g:amd64 libpam0g 1.4.0-11 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.39-3 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.3-2 install ok installed libselinux1:amd64 libselinux1 3.3-1+b1 install ok installed libsemanage-common libsemanage-common 3.3-1 install ok installed libsemanage2:amd64 libsemanage2 3.3-1+b1 install ok installed libsepol2:amd64 libsepol2 3.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-6 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1m-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 250.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 250.3-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-6 install ok installed ncurses-base ncurses-base 6.3-2 install ok installed ncurses-bin ncurses-bin 6.3-2 install ok installed passwd passwd 1:4.8.1-2 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.01-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021e-1 install ok installed util-linux util-linux 2.37.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'remove', 'disulfinder-data', 'disulfinder'] 0m20.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: disulfinder disulfinder-data 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 13.6 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7240 files and directories currently installed.) Removing disulfinder (1.2.11-12) ... Removing disulfinder-data (1.2.11-12) ... 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'remove', 'disulfinder-data', 'disulfinder'] 0m20.2s INFO: Running scripts post_remove 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_remove_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_remove_exceptions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--purge', 'disulfinder-data'] 0m20.2s DUMP: dpkg: warning: ignoring request to remove disulfinder-data which isn't installed 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--purge', 'disulfinder-data'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--purge', 'disulfinder'] 0m20.2s DUMP: dpkg: warning: ignoring request to remove disulfinder which isn't installed 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--purge', 'disulfinder'] 0m20.2s INFO: Running scripts post_purge 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_purge_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_purge_exceptions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--purge', '--pending'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--purge', '--pending'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--remove', '--pending'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg', '--remove', '--pending'] 0m20.2s INFO: Running scripts post_test 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_test_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'tmp/scripts/post_test_exceptions'] 0m20.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m20.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg-divert', '--list'] 0m20.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'dpkg-divert', '--list'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'clean'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj', 'apt-get', 'clean'] 0m20.7s DEBUG: Recording chroot state 0m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/shm'] 0m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/shm'] 0m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/console'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/console'] 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/ptmx'] 0m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/ptmx'] 0m21.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/pts'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/dev/pts'] 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/proc'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj/proc'] 0m21.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m21.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpjobjcaaj'] 0m21.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpjobjcaaj 0m21.9s INFO: PASS: Upgrading between Debian distributions. 0m21.9s INFO: PASS: All tests. 0m21.9s INFO: piuparts run ends. ret=0 End: 2022-01-20 15:51:05 GMT