Start: 2021-08-23 03:25:43 GMT [testing] Package: e-mem Version: 1.0.1-4 Installed-Size: 106 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Enhances: mummer Description: Efficient computation of Maximal Exact Matches for very large genomes Homepage: https://www.csd.uwo.ca/~ilie/E-MEM/ Description-md5: a8d314b23e03422aaffd210350781251 Section: science Priority: optional Filename: pool/main/e/e-mem/e-mem_1.0.1-4_amd64.deb Size: 34880 MD5sum: 44c15cc23c94c668dfdb762cdc293f9b SHA256: 034908ee4d01b9f58fd3eca7f3ca909943d3be657f16178571a04d10d58f8dbe [sid] Package: e-mem Version: 1.0.1-5 Installed-Size: 106 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Enhances: mummer Description: Efficient computation of Maximal Exact Matches for very large genomes Homepage: https://www.csd.uwo.ca/~ilie/E-MEM/ Description-md5: a8d314b23e03422aaffd210350781251 Section: science Priority: optional Filename: pool/main/e/e-mem/e-mem_1.0.1-5_amd64.deb Size: 34848 MD5sum: 297e8f09409eda083581e616a99e77ab SHA256: bbf43455eff9d5961913c5a841a150d17b6a4a96bd4a7ed9e5ed3aa05ac7fca4 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt e-mem=1.0.1-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt e-mem=1.0.1-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpmtpgdfmc 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpmtpgdfmc 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpmtpgdfmc/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [94.6 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8244 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5667 kB] Fetched 14.0 MB in 2s (8601 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: e2fsprogs libaudit-common libaudit1 libcom-err2 libext2fs2 libidn2-0 libss2 libsystemd0 libtirpc-common libtirpc3 libudev1 libunistring2 logsave perl-base 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3924 kB of archives. After this operation, 72.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.32.1-5 [1629 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 247.9-1 [376 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 logsave amd64 1.46.4-1 [75.9 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libext2fs2 amd64 1.46.4-1 [258 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 e2fsprogs amd64 1.46.4-1 [619 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.5-1 [15.7 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.5-1 [51.8 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libcom-err2 amd64 1.46.4-1 [75.2 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libunistring2 amd64 0.9.10-6 [384 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libidn2-0 amd64 2.3.2-2 [95.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.2-2 [13.8 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 247.9-1 [167 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libss2 amd64 1.46.4-1 [79.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3924 kB in 0s (53.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6653 files and directories currently installed.) Preparing to unpack .../perl-base_5.32.1-5_amd64.deb ... Unpacking perl-base (5.32.1-5) over (5.32.1-4) ... Setting up perl-base (5.32.1-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6653 files and directories currently installed.) Preparing to unpack .../libsystemd0_247.9-1_amd64.deb ... Unpacking libsystemd0:amd64 (247.9-1) over (247.3-6) ... Setting up libsystemd0:amd64 (247.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6653 files and directories currently installed.) Preparing to unpack .../logsave_1.46.4-1_amd64.deb ... Unpacking logsave (1.46.4-1) over (1.46.2-2) ... Preparing to unpack .../libext2fs2_1.46.4-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.4-1) over (1.46.2-2) ... Setting up libext2fs2:amd64 (1.46.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6653 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.4-1_amd64.deb ... Unpacking e2fsprogs (1.46.4-1) over (1.46.2-2) ... Preparing to unpack .../libaudit-common_1%3a3.0.5-1_all.deb ... Unpacking libaudit-common (1:3.0.5-1) over (1:3.0-2) ... Setting up libaudit-common (1:3.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6655 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.5-1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.0.5-1) over (1:3.0-2) ... Setting up libaudit1:amd64 (1:3.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6655 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.46.4-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.4-1) over (1.46.2-2) ... Setting up libcom-err2:amd64 (1.46.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6655 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-6_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-6) over (0.9.10-4) ... Setting up libunistring2:amd64 (0.9.10-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6655 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.2-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.2-2) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6655 files and directories currently installed.) Preparing to unpack .../libtirpc-common_1.3.2-2_all.deb ... Unpacking libtirpc-common (1.3.2-2) over (1.3.1-1) ... Setting up libtirpc-common (1.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6656 files and directories currently installed.) Preparing to unpack .../libtirpc3_1.3.2-2_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.2-2) over (1.3.1-1) ... Setting up libtirpc3:amd64 (1.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6657 files and directories currently installed.) Preparing to unpack .../libudev1_247.9-1_amd64.deb ... Unpacking libudev1:amd64 (247.9-1) over (247.3-6) ... Setting up libudev1:amd64 (247.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6657 files and directories currently installed.) Preparing to unpack .../libss2_1.46.4-1_amd64.deb ... Unpacking libss2:amd64 (1.46.4-1) over (1.46.2-2) ... Setting up libss2:amd64 (1.46.4-1) ... Setting up logsave (1.46.4-1) ... Setting up e2fsprogs (1.46.4-1) ... Installing new version of config file /etc/mke2fs.conf ... Processing triggers for libc-bin (2.31-13) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s DUMP: 3ea30b28e0dd0474fc513ef2f8f52c22 - 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s INFO: Running scripts post_setup 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_zz_backports'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_setup_zz_backports'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-3+b1 install ok installed bsdutils bsdutils 1:2.36.1-8 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13 install ok installed libc6:amd64 libc6 2.31-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.36.1-8 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9 install ok installed libpam-runtime libpam-runtime 1.4.0-9 install ok installed libpam0g:amd64 libpam0g 1.4.0-9 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1k-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.9-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 247.9-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.36.1-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.36.1-8 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m7.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m7.4s INFO: Running scripts is_testable 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/is_testable_uninstallable'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/is_testable_uninstallable'] 0m7.4s INFO: Running scripts pre_test 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_test_exceptions'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_test_exceptions'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_test_root_password'] 0m7.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_test_root_password'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'show', '--no-all-versions', 'e-mem'] 0m7.6s DUMP: Package: e-mem Version: 1.0.1-4 Installed-Size: 106 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Enhances: mummer Description-en: Efficient computation of Maximal Exact Matches for very large genomes E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that does not use full text indexes. The algorithm uses much less space and is highly amenable to parallelization. It can compute all MEMs of minimum length 100 between the whole human and mouse genomes on a 12 core machine in 10 min and 2 GB of memory; the required memory can be as low as 600 MB. It can run efficiently genomes of any size. Extensive testing and comparison with currently best algorithms is provided. . Mummer has many different scripts where one of the key program is MEM computation. In all the scripts, the MEM computation program can be replaced with e-mem with ease for better performance. Description-md5: a8d314b23e03422aaffd210350781251 Homepage: https://www.csd.uwo.ca/~ilie/E-MEM/ Section: science Priority: optional Filename: pool/main/e/e-mem/e-mem_1.0.1-4_amd64.deb Size: 34880 MD5sum: 44c15cc23c94c668dfdb762cdc293f9b SHA256: 034908ee4d01b9f58fd3eca7f3ca909943d3be657f16178571a04d10d58f8dbe 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'show', '--no-all-versions', 'e-mem'] 0m7.6s INFO: apt-cache knows about the following packages: e-mem 0m7.6s INFO: Running scripts pre_install 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_database-server'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_database-server'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_exceptions'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_extras'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_extras'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy'] 0m7.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy', 'e-mem'] 0m7.8s DUMP: e-mem: Installed: (none) Candidate: 1.0.1-4 Version table: 1.0.1-4 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy', 'e-mem'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-y', 'install', 'e-mem'] 0m8.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libgomp1 The following NEW packages will be installed: e-mem libgomp1 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 e-mem amd64 1.0.1-4 [34.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (4215 kB/s) Selecting previously unselected package libgomp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6659 files and directories currently installed.) Preparing to unpack .../libgomp1_10.2.1-6_amd64.deb ... Unpacking libgomp1:amd64 (10.2.1-6) ... Selecting previously unselected package e-mem. Preparing to unpack .../e-mem_1.0.1-4_amd64.deb ... Unpacking e-mem (1.0.1-4) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up e-mem (1.0.1-4) ... Processing triggers for libc-bin (2.31-13) ... 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-y', 'install', 'e-mem'] 0m8.3s INFO: Running scripts post_install 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_install_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_install_exceptions'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m8.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m8.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpmtpgdfmc to sid 0m8.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.6s INFO: Running scripts pre_distupgrade 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'update'] 0m12.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8727 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6525 kB] Fetched 15.4 MB in 3s (5575 kB/s) Reading package lists... 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'update'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-yf', 'dist-upgrade'] 0m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-11-base The following packages will be upgraded: apt base-files bsdutils debianutils e-mem gcc-9-base libapt-pkg6.0 libblkid1 libc-bin libc6 libcrypt1 libgcc-s1 libgomp1 libgpg-error0 libmount1 libsmartcols1 libstdc++6 libuuid1 mount util-linux 20 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 9842 kB of archives. After this operation, 850 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 12 [70.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.37.2-1 [149 kB] Get:3 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.4-1 [93.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-2 [204 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-2 [42.0 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.31-16 [2817 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.37.2-1 [201 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.37.2-1 [215 kB] Get:9 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.37.2-1 [1193 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-2 [576 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.3.8 [1020 kB] Get:12 http://deb.debian.org/debian sid/main amd64 apt amd64 2.3.8 [1498 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.31-16 [822 kB] Get:14 http://deb.debian.org/debian sid/main amd64 mount amd64 2.37.2-1 [189 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.25-1 [89.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.42-3 [79.0 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.37.2-1 [161 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.37.2-1 [84.3 kB] Get:19 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.4.0-2 [200 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 11.2.0-2 [106 kB] Get:21 http://deb.debian.org/debian sid/main amd64 e-mem amd64 1.0.1-5 [34.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9842 kB in 0s (93.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6678 files and directories currently installed.) Preparing to unpack .../base-files_12_amd64.deb ... Unpacking base-files (12) over (11.1) ... Setting up base-files (12) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6678 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.37.2-1_amd64.deb ... Unpacking bsdutils (1:2.37.2-1) over (1:2.36.1-8) ... Setting up bsdutils (1:2.37.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6678 files and directories currently installed.) Preparing to unpack .../debianutils_5.4-1_amd64.deb ... Unpacking debianutils (5.4-1) over (4.11.2) ... Setting up debianutils (5.4-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode Selecting previously unselected package gcc-11-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../gcc-11-base_11.2.0-2_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-2) ... Setting up gcc-11-base:amd64 (11.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6679 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-2_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-2) over (10.2.1-6) ... Setting up libgcc-s1:amd64 (11.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6679 files and directories currently installed.) Preparing to unpack .../libc6_2.31-16_amd64.deb ... Unpacking libc6:amd64 (2.31-16) over (2.31-13) ... Setting up libc6:amd64 (2.31-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6679 files and directories currently installed.) Preparing to unpack .../libblkid1_2.37.2-1_amd64.deb ... Unpacking libblkid1:amd64 (2.37.2-1) over (2.36.1-8) ... Setting up libblkid1:amd64 (2.37.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6679 files and directories currently installed.) Preparing to unpack .../libmount1_2.37.2-1_amd64.deb ... Unpacking libmount1:amd64 (2.37.2-1) over (2.36.1-8) ... Setting up libmount1:amd64 (2.37.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6679 files and directories currently installed.) Preparing to unpack .../util-linux_2.37.2-1_amd64.deb ... Unpacking util-linux (2.37.2-1) over (2.36.1-8) ... Setting up util-linux (2.37.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../libstdc++6_11.2.0-2_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-2) over (10.2.1-6) ... Setting up libstdc++6:amd64 (11.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.8_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.8) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.3.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.8_amd64.deb ... Unpacking apt (2.3.8) over (2.2.4) ... Setting up apt (2.3.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-16_amd64.deb ... Unpacking libc-bin (2.31-16) over (2.31-13) ... Setting up libc-bin (2.31-16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../mount_2.37.2-1_amd64.deb ... Unpacking mount (2.37.2-1) over (2.36.1-8) ... Preparing to unpack .../libcrypt1_1%3a4.4.25-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.25-1) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.42-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.42-3) over (1.38-2) ... Setting up libgpg-error0:amd64 (1.42-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.37.2-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.37.2-1) over (2.36.1-8) ... Setting up libsmartcols1:amd64 (2.37.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../libuuid1_2.37.2-1_amd64.deb ... Unpacking libuuid1:amd64 (2.37.2-1) over (2.36.1-8) ... Setting up libuuid1:amd64 (2.37.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.4.0-2_amd64.deb ... Unpacking gcc-9-base:amd64 (9.4.0-2) over (9.3.0-22) ... Preparing to unpack .../libgomp1_11.2.0-2_amd64.deb ... Unpacking libgomp1:amd64 (11.2.0-2) over (10.2.1-6) ... Preparing to unpack .../e-mem_1.0.1-5_amd64.deb ... Unpacking e-mem (1.0.1-5) over (1.0.1-4) ... Setting up libgomp1:amd64 (11.2.0-2) ... Setting up mount (2.37.2-1) ... Setting up gcc-9-base:amd64 (9.4.0-2) ... Setting up e-mem (1.0.1-5) ... Processing triggers for libc-bin (2.31-16) ... 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-yf', 'dist-upgrade'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.6s DUMP: 20bb6d850e9c5f15f4783354fcee4a14 - 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'show', '--no-all-versions', 'e-mem'] 0m16.8s DUMP: Package: e-mem Version: 1.0.1-5 Installed-Size: 106 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Enhances: mummer Description-en: Efficient computation of Maximal Exact Matches for very large genomes E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that does not use full text indexes. The algorithm uses much less space and is highly amenable to parallelization. It can compute all MEMs of minimum length 100 between the whole human and mouse genomes on a 12 core machine in 10 min and 2 GB of memory; the required memory can be as low as 600 MB. It can run efficiently genomes of any size. Extensive testing and comparison with currently best algorithms is provided. . Mummer has many different scripts where one of the key program is MEM computation. In all the scripts, the MEM computation program can be replaced with e-mem with ease for better performance. Description-md5: a8d314b23e03422aaffd210350781251 Homepage: https://www.csd.uwo.ca/~ilie/E-MEM/ Section: science Priority: optional Filename: pool/main/e/e-mem/e-mem_1.0.1-5_amd64.deb Size: 34848 MD5sum: 297e8f09409eda083581e616a99e77ab SHA256: bbf43455eff9d5961913c5a841a150d17b6a4a96bd4a7ed9e5ed3aa05ac7fca4 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'show', '--no-all-versions', 'e-mem'] 0m16.8s INFO: apt-cache knows about the following packages: e-mem 0m16.8s INFO: Running scripts pre_install 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_database-server'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_database-server'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy'] 0m17.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy', 'e-mem'] 0m17.0s DUMP: e-mem: Installed: 1.0.1-5 Candidate: 1.0.1-5 Version table: *** 1.0.1-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy', 'e-mem'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-y', 'install', 'e-mem'] 0m17.5s DUMP: Reading package lists... Building dependency tree... Reading state information... e-mem is already the newest version (1.0.1-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-y', 'install', 'e-mem'] 0m17.5s INFO: Running scripts post_install 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_install_exceptions'] 0m17.5s INFO: Running scripts post_distupgrade 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m17.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m18.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m18.2s INFO: Running scripts pre_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_database-server'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_exceptions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_exceptions'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_extras'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_extras'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy'] 0m18.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy', 'e-mem'] 0m18.3s DUMP: e-mem: Installed: 1.0.1-5 Candidate: 1.0.1-5 Version table: *** 1.0.1-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-cache', 'policy', 'e-mem'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-y', 'install', 'e-mem=1.0.1-5'] 0m18.7s DUMP: Reading package lists... Building dependency tree... Reading state information... e-mem is already the newest version (1.0.1-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', '-y', 'install', 'e-mem=1.0.1-5'] 0m18.7s INFO: Running scripts post_install 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_install_exceptions'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_install_exceptions'] 0m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m18.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m19.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', '-ac', '--ignore-obsolete'] 0m19.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', '-ac', '--ignore-obsolete'] 0m19.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.8s DUMP: 0.15.2 0m19.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.8s INFO: Running adequate version 0.15.2 now. 0m19.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'e-mem'] 0m19.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'e-mem'] 0m19.9s INFO: Running scripts pre_remove 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_exceptions'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/pre_remove_exceptions'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.8 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-3+b1 install ok installed bsdutils bsdutils 1:2.37.2-1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.4-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e-mem e-mem 1.0.1-5 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-2 install ok installed gcc-9-base:amd64 gcc-9-base 9.4.0-2 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.8 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.5-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-16 install ok installed libc6:amd64 libc6 2.31-16 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5 install ok installed libgomp1:amd64 libgomp1 11.2.0-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9 install ok installed libpam-runtime libpam-runtime 1.4.0-9 install ok installed libpam0g:amd64 libpam0g 1.4.0-9 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-1 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1k-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 247.9-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 247.9-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-1 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1 install ok installed util-linux util-linux 2.37.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'remove', 'libgomp1:amd64', 'e-mem'] 0m21.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: e-mem libgomp1 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 411 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6681 files and directories currently installed.) Removing e-mem (1.0.1-5) ... Removing libgomp1:amd64 (11.2.0-2) ... Processing triggers for libc-bin (2.31-16) ... 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'remove', 'libgomp1:amd64', 'e-mem'] 0m21.1s INFO: Running scripts post_remove 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_remove_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_remove_exceptions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--purge', 'libgomp1:amd64'] 0m21.1s DUMP: dpkg: warning: ignoring request to remove libgomp1 which isn't installed 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--purge', 'libgomp1:amd64'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--purge', 'e-mem'] 0m21.1s DUMP: dpkg: warning: ignoring request to remove e-mem which isn't installed 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--purge', 'e-mem'] 0m21.1s INFO: Running scripts post_purge 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_purge_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_purge_exceptions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--purge', '--pending'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--purge', '--pending'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--remove', '--pending'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg', '--remove', '--pending'] 0m21.1s INFO: Running scripts post_test 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_test_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'tmp/scripts/post_test_exceptions'] 0m21.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m21.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg-divert', '--list'] 0m21.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'dpkg-divert', '--list'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'clean'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc', 'apt-get', 'clean'] 0m21.5s DEBUG: Recording chroot state 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/shm'] 0m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/shm'] 0m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/console'] 0m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/console'] 0m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/ptmx'] 0m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/ptmx'] 0m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/pts'] 0m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/dev/pts'] 0m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/proc'] 0m22.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc/proc'] 0m22.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m22.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmtpgdfmc'] 0m22.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpmtpgdfmc 0m22.3s INFO: PASS: Upgrading between Debian distributions. 0m22.3s INFO: PASS: All tests. 0m22.3s INFO: piuparts run ends. ret=0 End: 2021-08-23 03:26:05 GMT