Start: 2022-09-19 00:48:51 GMT [testing] Package: ea-utils Source: ea-utils (1.1.2+dfsg-9) Version: 1.1.2+dfsg-9+b1 Installed-Size: 767 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl27 (>= 2.7.1), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice, r-cran-survival, r-cran-formula, r-cran-ggplot2 Recommends: med-config (>= 2.1) Description: command-line tools for processing biological sequencing data Homepage: https://expressionanalysis.github.io/ea-utils/ Description-md5: 68e944c2e2cbc6ff1efe839c3a4b9947 Section: science Priority: optional Filename: pool/main/e/ea-utils/ea-utils_1.1.2+dfsg-9+b1_amd64.deb Size: 238244 MD5sum: 8083aadb938c18f86f8ead4feccb6af4 SHA256: ddf3f674afd64c323e3085e5fa1893d86492d89d0037a287811e4b75e9153480 [sid] Package: ea-utils Source: ea-utils (1.1.2+dfsg-9) Version: 1.1.2+dfsg-9+b2 Installed-Size: 747 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgsl27 (>= 2.7.1), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice, r-cran-survival, r-cran-formula, r-cran-ggplot2 Recommends: med-config (>= 2.1) Description: command-line tools for processing biological sequencing data Homepage: https://expressionanalysis.github.io/ea-utils/ Description-md5: 68e944c2e2cbc6ff1efe839c3a4b9947 Section: science Priority: optional Filename: pool/main/e/ea-utils/ea-utils_1.1.2+dfsg-9+b2_amd64.deb Size: 236172 MD5sum: cb274b1d7c1cd829f9bcadfd023d1295 SHA256: ea31b65ffacf615916dc3886074e31cea8a80a10fba99aa65e71e2102c97b6f5 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt ea-utils=1.1.2+dfsg-9+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt ea-utils=1.1.2+dfsg-9+b2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpqpe40j6x 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpqpe40j6x 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpqpe40j6x/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'update'] 0m5.3s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [157 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8488 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5781 kB] Fetched 14.4 MB in 2s (6194 kB/s) Reading package lists... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'update'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-12-base libgcc-s1 libstdc++6 libtasn1-6 usr-is-merged 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 932 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-2 [208 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-2 [613 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-2 [50.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2 [56.6 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 usr-is-merged all 30 [4420 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 932 kB in 0s (18.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../gcc-12-base_12.2.0-2_amd64.deb ... Unpacking gcc-12-base:amd64 (12.2.0-2) over (12.2.0-1) ... Setting up gcc-12-base:amd64 (12.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libstdc++6_12.2.0-2_amd64.deb ... Unpacking libstdc++6:amd64 (12.2.0-2) over (12.2.0-1) ... Setting up libstdc++6:amd64 (12.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.2.0-2_amd64.deb ... Unpacking libgcc-s1:amd64 (12.2.0-2) over (12.2.0-1) ... Setting up libgcc-s1:amd64 (12.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-2) over (4.18.0-4) ... Setting up libtasn1-6:amd64 (4.19.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../usr-is-merged_30_all.deb ... Unpacking usr-is-merged (30) over (29) ... Setting up usr-is-merged (30) ... Processing triggers for libc-bin (2.34-7) ... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.8s DUMP: c2b3bf3ac52797def9fe65a5bd69c8e8 - 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.8s INFO: Running scripts post_setup 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.2~rc2-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-2 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-7 install ok installed libc6:amd64 libc6 2.34-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed usr-is-merged usr-is-merged 30 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m8.5s INFO: Running scripts is_testable 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s INFO: Running scripts pre_test 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_test_root_password'] 0m8.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_test_root_password'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'show', '--no-all-versions', 'ea-utils'] 0m8.8s DUMP: Package: ea-utils Source: ea-utils (1.1.2+dfsg-9) Version: 1.1.2+dfsg-9+b1 Installed-Size: 767 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl27 (>= 2.7.1), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice, r-cran-survival, r-cran-formula, r-cran-ggplot2 Recommends: med-config (>= 2.1) Description-en: command-line tools for processing biological sequencing data Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc. . Primarily written to support an Illumina based pipeline - but should work with any FASTQs. . Main Tools are: . * fastq-mcf Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering. * fastq-multx Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not. * fastq-join Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools. * varcall Takes a pileup and calculates variants in a more easily parameterized manner than some other tools. Description-md5: 68e944c2e2cbc6ff1efe839c3a4b9947 Homepage: https://expressionanalysis.github.io/ea-utils/ Section: science Priority: optional Filename: pool/main/e/ea-utils/ea-utils_1.1.2+dfsg-9+b1_amd64.deb Size: 238244 MD5sum: 8083aadb938c18f86f8ead4feccb6af4 SHA256: ddf3f674afd64c323e3085e5fa1893d86492d89d0037a287811e4b75e9153480 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'show', '--no-all-versions', 'ea-utils'] 0m8.8s INFO: apt-cache knows about the following packages: ea-utils 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy'] 0m8.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy', 'ea-utils'] 0m9.0s DUMP: ea-utils: Installed: (none) Candidate: 1.1.2+dfsg-9+b1 Version table: 1.1.2+dfsg-9+b1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy', 'ea-utils'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-y', 'install', 'ea-utils'] 0m34.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-mathjax libblas3 libbrotli1 libbsd0 libcairo2 libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu71 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblerc4 libmd0 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl3 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-common libtirpc3 libtk8.6 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 littler node-normalize.css openssl r-base-core r-cran-acepack r-cran-backports r-cran-base64enc r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-colorspace r-cran-cpp11 r-cran-data.table r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-foreign r-cran-formula r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rlang r-cran-rpart r-cran-rstudioapi r-cran-scales r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun r-cran-yaml readline-common sensible-utils ucf unzip x11-common xdg-utils zip Suggested packages: gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 libjs-html5shiv elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-devtools r-cran-rmarkdown r-cran-tinytest r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-bench r-cran-desc r-cran-bit64 r-cran-bit r-cran-curl r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-polyclip r-cran-unitizer r-cran-crayon r-cran-dbi r-cran-forcats r-cran-rsqlite r-cran-waldo r-cran-markdown r-cran-cairo r-cran-ragg r-cran-testthat r-cran-sp r-cran-magick r-cran-sf r-cran-httr r-cran-r.rsp r-cran-formatr r-cran-rgl r-cran-webshot r-cran-reticulate r-cran-xml2 r-cran-sass r-cran-bslib r-cran-gridsvg r-cran-lintr r-cran-tidyverse r-cran-formattable r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-inline r-cran-fs r-cran-usethis r-cran-dichromat r-cran-blob r-cran-brio r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-readr r-cran-zeallot r-cran-codetools r-cran-tinytex r-cran-remotes r-cran-runit readline-doc Recommended packages: med-config libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libldap-common publicsuffix libsasl2-modules r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-fastmatch r-cran-mockery r-cran-decor r-cran-brio r-cran-progress r-cran-bench r-cran-broom r-cran-callr r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-lobstr r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-pkgload r-cran-ragg r-cran-hexbin r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-testit r-cran-markdown r-cran-sp r-cran-tikzdevice r-cran-codetools r-cran-tinytex node-highlight.js r-cran-crayon r-cran-lubridate r-cran-bit64 r-cran-hms r-cran-mockr r-cran-formattable r-cran-waldo r-cran-mime libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates ea-utils fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-mathjax libblas3 libbrotli1 libbsd0 libcairo2 libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu71 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblerc4 libmd0 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl3 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-common libtirpc3 libtk8.6 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 littler node-normalize.css openssl r-base-core r-cran-acepack r-cran-backports r-cran-base64enc r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-colorspace r-cran-cpp11 r-cran-data.table r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-foreign r-cran-formula r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rlang r-cran-rpart r-cran-rstudioapi r-cran-scales r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun r-cran-yaml readline-common sensible-utils ucf unzip x11-common xdg-utils zip 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After this operation, 305 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2~rc2-2 [75.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.5-2 [2030 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.5-2 [1421 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20211016 [156 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libgslcblas0 amd64 2.7.1+dfsg-3 [104 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libgsl27 amd64 2.7.1+dfsg-3 [946 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-12 [232 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-27 [172 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.10.1-2 [156 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b4 [275 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.37-5 [290 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config all 2.13.1-4.4 [281 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.4 [350 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.40.0-1 [543 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.6-1 [114 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.1-2 [308 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.1-2 [772 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-6 [587 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-8 [38.7 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-8 [78.2 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2+b1 [226 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.49.0-1 [81.3 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.85.0-1 [367 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.73.3-3 [1461 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-2 [116 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-2 [145 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-2 [792 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.10.1-2 [2202 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.13.1-4.4 [417 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 2.7.4-1+b1 [1469 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2 [43.0 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.9+ds-1 [239 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.9+ds-1 [75.3 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.9+ds-1 [62.5 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2~rc2-2 [173 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.12+dfsg-1 [1033 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.12-1 [71.6 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-1 [170 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b1 [277 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-4 [314 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.4-1 [57.4 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.12-1 [779 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1 [189 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.1-2 [28.1 MB] Get:82 http://deb.debian.org/debian bookworm/main amd64 r-cran-getopt all 1.20.3-3 [35.8 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 r-cran-lattice amd64 0.20-45-3 [1177 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrix amd64 1.4-1-1 [4344 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 r-cran-survival amd64 3.4-0-1 [5803 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 r-cran-formula all 1.2-4-1 [175 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 r-cran-digest amd64 0.6.29-1 [186 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 r-cran-glue amd64 1.6.2-1 [152 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 r-cran-isoband amd64 0.2.5-1 [1788 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 r-cran-mass amd64 7.3-58.1-1 [1122 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 r-cran-nlme amd64 3.1.159-1 [2259 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 r-cran-mgcv amd64 1.8-40-1 [3023 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 r-cran-rlang amd64 1.0.5-1 [1617 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 r-cran-farver amd64 2.1.1-1 [1404 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 r-cran-lifecycle all 1.0.2+dfsg-1 [93.0 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 r-cran-colorspace amd64 2.0-3+dfsg-1 [1698 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 r-cran-viridislite all 0.4.1-1 [1299 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 r-cran-scales all 1.2.1-1 [614 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 r-cran-fansi amd64 1.0.3-1 [617 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 r-cran-cli amd64 3.4.0-1 [1213 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 r-cran-utf8 amd64 1.2.2-1 [133 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 r-cran-vctrs amd64 0.4.1-2 [1269 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 r-cran-tibble amd64 3.1.8+dfsg-1 [513 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 r-cran-withr all 2.5.0-1 [236 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 r-cran-png amd64 0.1-7-4 [40.7 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 r-cran-jpeg amd64 0.1-9-1 [30.4 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 r-cran-littler amd64 0.3.16-1 [99.1 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 littler all 0.3.16-1 [17.3 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpp amd64 1.0.9-1 [2078 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 r-cran-deldir amd64 1.0-6-1 [277 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcppeigen amd64 0.3.3.9.2-1 [1194 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 r-cran-interp amd64 1.1-3-1 [1016 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 r-cran-latticeextra all 0.6-30-1 [2194 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 r-cran-cluster amd64 2.1.4-1 [567 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 r-cran-rpart amd64 4.1.16-1+b1 [918 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 r-cran-nnet amd64 7.3-17-1 [111 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 r-cran-foreign amd64 0.8.82-1 [252 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 r-cran-data.table amd64 1.14.2+dfsg-1 [1716 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringi amd64 1.7.8-1 [861 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringr all 1.4.1-1 [202 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 r-cran-evaluate all 0.16-1 [85.8 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 r-cran-xfun amd64 0.32+dfsg-1 [384 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 r-cran-highr all 0.9+dfsg-1 [38.6 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 r-cran-yaml amd64 2.3.5-1 [105 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 r-cran-knitr all 1.40+dfsg-1 [893 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 r-cran-backports amd64 1.4.1-1 [101 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 r-cran-checkmate amd64 2.1.0-1 [616 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 r-cran-fastmap amd64 1.1.0-1 [64.7 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 r-cran-htmltools amd64 0.5.3-1 [358 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 r-cran-jsonlite amd64 1.8.0+dfsg-1 [437 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 r-cran-htmlwidgets all 1.5.4+dfsg-1 [124 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 r-cran-rstudioapi all 0.14-1 [281 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 r-cran-purrr amd64 0.3.4-1+b1 [398 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyselect amd64 1.1.2+dfsg-1 [194 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 r-cran-dplyr amd64 1.0.10-1 [1227 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 r-cran-cpp11 all 0.4.2-1 [223 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyr amd64 1.2.1-1 [856 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 r-cran-htmltable all 2.4.1-1 [386 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 r-cran-viridis all 0.6.2-1 [2976 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 r-cran-chron amd64 2.3-57-1 [195 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 r-cran-acepack amd64 1.4.1-2+b5 [59.7 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 r-cran-hmisc amd64 4.7-1-1 [3230 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 ea-utils amd64 1.1.2+dfsg-9+b1 [238 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 MB in 3s (52.1 MB/s) Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2~rc2-2_all.deb ... Unpacking readline-common (8.2~rc2-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../002-libssl3_3.0.5-2_amd64.deb ... Unpacking libssl3:amd64 (3.0.5-2) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.0.5-2_amd64.deb ... Unpacking openssl (3.0.5-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package ucf. Preparing to unpack .../005-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libgslcblas0:amd64. Preparing to unpack .../006-libgslcblas0_2.7.1+dfsg-3_amd64.deb ... Unpacking libgslcblas0:amd64 (2.7.1+dfsg-3) ... Selecting previously unselected package libgsl27:amd64. Preparing to unpack .../007-libgsl27_2.7.1+dfsg-3_amd64.deb ... Unpacking libgsl27:amd64 (2.7.1+dfsg-3) ... Selecting previously unselected package zip. Preparing to unpack .../008-zip_3.0-12_amd64.deb ... Unpacking zip (3.0-12) ... Selecting previously unselected package unzip. Preparing to unpack .../009-unzip_6.0-27_amd64.deb ... Unpacking unzip (6.0-27) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../010-libpaper1_1.1.28+b1_amd64.deb ... Unpacking libpaper1:amd64 (1.1.28+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../011-libpaper-utils_1.1.28+b1_amd64.deb ... Unpacking libpaper-utils (1.1.28+b1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../012-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../013-libblas3_3.10.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.10.1-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../014-libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../015-libbrotli1_1.0.9-2+b4_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b4) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../016-libpng16-16_1.6.37-5_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../017-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../018-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../019-fontconfig-config_2.13.1-4.4_all.deb ... Unpacking fontconfig-config (2.13.1-4.4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../020-libfontconfig1_2.13.1-4.4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.4) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../021-libpixman-1-0_0.40.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.40.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../022-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../023-libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../024-libbsd0_0.11.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.6-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../025-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../026-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../027-libx11-data_2%3a1.8.1-2_all.deb ... Unpacking libx11-data (2:1.8.1-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../028-libx11-6_2%3a1.8.1-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.1-2) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../029-libxcb-render0_1.15-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../030-libxcb-shm0_1.15-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.15-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../031-libxext6_2%3a1.3.4-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../032-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../033-libcairo2_1.16.0-6_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../034-libkrb5support0_1.20-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../035-libk5crypto3_1.20-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../036-libkeyutils1_1.6.3-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../037-libkrb5-3_1.20-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../038-libgssapi-krb5-2_1.20-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20-1) ... 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Unpacking r-cran-cpp11 (0.4.2-1) ... Selecting previously unselected package r-cran-tidyr. Preparing to unpack .../158-r-cran-tidyr_1.2.1-1_amd64.deb ... Unpacking r-cran-tidyr (1.2.1-1) ... Selecting previously unselected package r-cran-htmltable. Preparing to unpack .../159-r-cran-htmltable_2.4.1-1_all.deb ... Unpacking r-cran-htmltable (2.4.1-1) ... Selecting previously unselected package r-cran-viridis. Preparing to unpack .../160-r-cran-viridis_0.6.2-1_all.deb ... Unpacking r-cran-viridis (0.6.2-1) ... Selecting previously unselected package r-cran-chron. Preparing to unpack .../161-r-cran-chron_2.3-57-1_amd64.deb ... Unpacking r-cran-chron (2.3-57-1) ... Selecting previously unselected package r-cran-acepack. Preparing to unpack .../162-r-cran-acepack_1.4.1-2+b5_amd64.deb ... Unpacking r-cran-acepack (1.4.1-2+b5) ... Selecting previously unselected package r-cran-hmisc. Preparing to unpack .../163-r-cran-hmisc_4.7-1-1_amd64.deb ... Unpacking r-cran-hmisc (4.7-1-1) ... Selecting previously unselected package ea-utils. Preparing to unpack .../164-ea-utils_1.1.2+dfsg-9+b1_amd64.deb ... Unpacking ea-utils (1.1.2+dfsg-9+b1) ... Setting up libexpat1:amd64 (2.4.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up libpixman-1-0:amd64 (0.40.0-1) ... Setting up libicu71:amd64 (71.1-3) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up liblerc4:amd64 (4.0.0+ds-1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libdatrie1:amd64 (0.2.13-2) ... Setting up libgslcblas0:amd64 (2.7.1+dfsg-3) ... Setting up libglib2.0-0:amd64 (2.73.3-3) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up unzip (6.0-27) ... Setting up libbrotli1:amd64 (1.0.9-2+b4) ... Setting up libssl3:amd64 (3.0.5-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.49.0-1) ... Setting up libdeflate0:amd64 (1.12-1) ... Setting up libgsl27:amd64 (2.7.1+dfsg-3) ... Setting up libgomp1:amd64 (12.2.0-2) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-8) ... Setting up zip (3.0-12) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up libx11-data (2:1.8.1-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-2) ... Setting up libpng16-16:amd64 (1.6.37-5) ... Setting up libtcl8.6:amd64 (8.6.12+dfsg-1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-8) ... Setting up libgfortran5:amd64 (12.2.0-2) ... Setting up libwebp7:amd64 (1.2.2-2+b1) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up sensible-utils (0.0.17) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up libtiff5:amd64 (4.4.0-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.5-2) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up readline-common (8.2~rc2-2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libreadline8:amd64 (8.2~rc2-2) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Setting up ucf (3.0043) ... Setting up libcurl4:amd64 (7.85.0-1) ... Setting up libx11-6:amd64 (2:1.8.1-2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1+b1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up fontconfig-config (2.13.1-4.4) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.4) ... Setting up fontconfig (2.13.1-4.4) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.4-1) ... Setting up libtk8.6:amd64 (8.6.12-1) ... Setting up libpango-1.0-0:amd64 (1.50.9+ds-1) ... Setting up libcairo2:amd64 (1.16.0-6) ... Setting up libpangoft2-1.0-0:amd64 (1.50.9+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.9+ds-1) ... Setting up r-base-core (4.2.1-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.159-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up r-cran-formula (1.2-4-1) ... Setting up r-cran-viridislite (0.4.1-1) ... Setting up r-cran-cluster (2.1.4-1) ... Setting up r-cran-nnet (7.3-17-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up r-cran-jpeg (0.1-9-1) ... Setting up r-cran-chron (2.3-57-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-littler (0.3.16-1) ... Setting up r-cran-rcpp (1.0.9-1) ... Setting up r-cran-rlang (1.0.5-1) ... Setting up littler (0.3.16-1) ... Setting up r-cran-xfun (0.32+dfsg-1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-backports (1.4.1-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.29-1) ... Setting up r-cran-yaml (2.3.5-1) ... Setting up r-cran-evaluate (0.16-1) ... Setting up r-cran-highr (0.9+dfsg-1) ... Setting up r-cran-fansi (1.0.3-1) ... Setting up r-cran-mass (7.3-58.1-1) ... Setting up r-cran-checkmate (2.1.0-1) ... Setting up r-cran-acepack (1.4.1-2+b5) ... Setting up r-cran-data.table (1.14.2+dfsg-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-foreign (0.8.82-1) ... Setting up r-cran-cli (3.4.0-1) ... Setting up r-cran-lifecycle (1.0.2+dfsg-1) ... Setting up r-cran-deldir (1.0-6-1) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-cran-jsonlite (1.8.0+dfsg-1) ... Setting up r-cran-rstudioapi (0.14-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-getopt (1.20.3-3) ... Setting up r-cran-utf8 (1.2.2-1) ... Setting up r-cran-colorspace (2.0-3+dfsg-1) ... Setting up r-cran-stringi (1.7.8-1) ... Setting up r-cran-cpp11 (0.4.2-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-cran-isoband (0.2.5-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-purrr (0.3.4-1+b1) ... Setting up r-cran-matrix (1.4-1-1) ... Setting up r-cran-htmltools (0.5.3-1) ... Setting up r-cran-mgcv (1.8-40-1) ... Setting up r-cran-vctrs (0.4.1-2) ... Setting up r-cran-rcppeigen (0.3.3.9.2-1) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-stringr (1.4.1-1) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up r-cran-survival (3.4-0-1) ... Setting up r-cran-htmlwidgets (1.5.4+dfsg-1) ... Setting up r-cran-tidyselect (1.1.2+dfsg-1) ... Setting up r-cran-interp (1.1-3-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-knitr (1.40+dfsg-1) ... Setting up r-cran-dplyr (1.0.10-1) ... Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ... Setting up r-cran-rpart (4.1.16-1+b1) ... Setting up r-cran-latticeextra (0.6-30-1) ... Setting up r-cran-viridis (0.6.2-1) ... Setting up r-cran-tidyr (1.2.1-1) ... Setting up r-cran-htmltable (2.4.1-1) ... Setting up r-cran-hmisc (4.7-1-1) ... Setting up ea-utils (1.1.2+dfsg-9+b1) ... Processing triggers for libc-bin (2.34-7) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-y', 'install', 'ea-utils'] 0m34.5s INFO: Running scripts post_install 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_install_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_install_exceptions'] 0m34.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m35.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m35.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpqpe40j6x to sid 0m35.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m35.5s INFO: Running scripts pre_distupgrade 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'update'] 0m39.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [158 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9344 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6903 kB] Fetched 16.4 MB in 3s (5626 kB/s) Reading package lists... 0m39.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'update'] 0m39.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-yf', 'dist-upgrade'] 0m46.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: e2fsprogs ea-utils fontconfig fontconfig-config grep init-system-helpers libc-bin libc6 libcom-err2 libexpat1 libext2fs2 libfontconfig1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libss2 libtk8.6 libxext6 logsave lsb-base r-cran-isoband r-cran-matrix sysvinit-utils usr-is-merged 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 485 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 grep amd64 3.8-2 [432 kB] Get:2 http://deb.debian.org/debian sid/main amd64 usr-is-merged all 30+nmu1 [4732 B] Get:3 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.65.2 [49.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.34-8 [2766 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.34-8 [898 kB] Get:6 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.05-5 [31.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.4 [22.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.46.6~rc1-1 [76.7 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.46.6~rc1-1 [259 kB] Get:10 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.46.6~rc1-1 [623 kB] Get:11 http://deb.debian.org/debian sid/main amd64 ea-utils amd64 1.1.2+dfsg-9+b2 [236 kB] Get:12 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.13.1-4.5 [281 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.4.8-2 [105 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.13.1-4.5 [351 kB] Get:15 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.13.1-4.5 [417 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.46.6~rc1-1 [75.9 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.50.10+ds-1 [239 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.50.10+ds-1 [62.4 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.50.10+ds-1 [75.4 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.46.6~rc1-1 [80.6 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.12-1+b1 [781 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:23 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.2.5-1+b1 [1789 kB] Get:24 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.5-1-1 [3762 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 1s (19.4 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21647 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2_all.deb ... Unpacking init-system-helpers (1.65.2) over (1.64) ... Setting up init-system-helpers (1.65.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21647 files and directories currently installed.) Preparing to unpack .../libc6_2.34-8_amd64.deb ... Unpacking libc6:amd64 (2.34-8) over (2.34-7) ... Setting up libc6:amd64 (2.34-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21647 files and directories currently installed.) Preparing to unpack .../libc-bin_2.34-8_amd64.deb ... Unpacking libc-bin (2.34-8) over (2.34-7) ... Setting up libc-bin (2.34-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21647 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.4_all.deb ... Unpacking lsb-base (11.4) over (11.2) ... Preparing to unpack .../sysvinit-utils_3.05-5_amd64.deb ... Unpacking sysvinit-utils (3.05-5) over (3.04-1) ... Setting up sysvinit-utils (3.05-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21646 files and directories currently installed.) Preparing to unpack .../logsave_1.46.6~rc1-1_amd64.deb ... Unpacking logsave (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../libext2fs2_1.46.6~rc1-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.6~rc1-1) over (1.46.5-2) ... Setting up libext2fs2:amd64 (1.46.6~rc1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21646 files and directories currently installed.) Preparing to unpack .../00-e2fsprogs_1.46.6~rc1-1_amd64.deb ... Unpacking e2fsprogs (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../01-ea-utils_1.1.2+dfsg-9+b2_amd64.deb ... Unpacking ea-utils (1.1.2+dfsg-9+b2) over (1.1.2+dfsg-9+b1) ... Preparing to unpack .../02-fontconfig-config_2.13.1-4.5_amd64.deb ... Unpacking fontconfig-config (2.13.1-4.5) over (2.13.1-4.4) ... Preparing to unpack .../03-libexpat1_2.4.8-2_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-2) over (2.4.8-1) ... Preparing to unpack .../04-libfontconfig1_2.13.1-4.5_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.5) over (2.13.1-4.4) ... Preparing to unpack .../05-fontconfig_2.13.1-4.5_amd64.deb ... Unpacking fontconfig (2.13.1-4.5) over (2.13.1-4.4) ... Preparing to unpack .../06-libcom-err2_1.46.6~rc1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../07-libpango-1.0-0_1.50.10+ds-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.50.10+ds-1) over (1.50.9+ds-1) ... Preparing to unpack .../08-libpangocairo-1.0-0_1.50.10+ds-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.50.10+ds-1) over (1.50.9+ds-1) ... Preparing to unpack .../09-libpangoft2-1.0-0_1.50.10+ds-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.50.10+ds-1) over (1.50.9+ds-1) ... Preparing to unpack .../10-libss2_1.46.6~rc1-1_amd64.deb ... Unpacking libss2:amd64 (1.46.6~rc1-1) over (1.46.5-2) ... Preparing to unpack .../11-libtk8.6_8.6.12-1+b1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.12-1+b1) over (8.6.12-1) ... Preparing to unpack .../12-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) over (2:1.3.4-1) ... Preparing to unpack .../13-r-cran-isoband_0.2.5-1+b1_amd64.deb ... Unpacking r-cran-isoband (0.2.5-1+b1) over (0.2.5-1) ... Preparing to unpack .../14-r-cran-matrix_1.5-1-1_amd64.deb ... Unpacking r-cran-matrix (1.5-1-1) over (1.4-1-1) ... Setting up libexpat1:amd64 (2.4.8-2) ... Setting up lsb-base (11.4) ... Setting up fontconfig-config (2.13.1-4.5) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcom-err2:amd64 (1.46.6~rc1-1) ... Setting up ea-utils (1.1.2+dfsg-9+b2) ... Setting up r-cran-isoband (0.2.5-1+b1) ... Setting up libss2:amd64 (1.46.6~rc1-1) ... Setting up r-cran-matrix (1.5-1-1) ... Setting up logsave (1.46.6~rc1-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.5) ... Setting up fontconfig (2.13.1-4.5) ... Regenerating fonts cache... done. Setting up libtk8.6:amd64 (8.6.12-1+b1) ... Setting up libpango-1.0-0:amd64 (1.50.10+ds-1) ... Setting up e2fsprogs (1.46.6~rc1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.10+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.10+ds-1) ... Processing triggers for libc-bin (2.34-8) ... 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-yf', 'dist-upgrade'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m46.9s DUMP: d8462fefcd9151780c736f7b754f79d4 - 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'show', '--no-all-versions', 'ea-utils'] 0m47.2s DUMP: Package: ea-utils Source: ea-utils (1.1.2+dfsg-9) Version: 1.1.2+dfsg-9+b2 Installed-Size: 747 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgsl27 (>= 2.7.1), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice, r-cran-survival, r-cran-formula, r-cran-ggplot2 Recommends: med-config (>= 2.1) Description-en: command-line tools for processing biological sequencing data Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc. . Primarily written to support an Illumina based pipeline - but should work with any FASTQs. . Main Tools are: . * fastq-mcf Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering. * fastq-multx Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not. * fastq-join Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools. * varcall Takes a pileup and calculates variants in a more easily parameterized manner than some other tools. Description-md5: 68e944c2e2cbc6ff1efe839c3a4b9947 Homepage: https://expressionanalysis.github.io/ea-utils/ Section: science Priority: optional Filename: pool/main/e/ea-utils/ea-utils_1.1.2+dfsg-9+b2_amd64.deb Size: 236172 MD5sum: cb274b1d7c1cd829f9bcadfd023d1295 SHA256: ea31b65ffacf615916dc3886074e31cea8a80a10fba99aa65e71e2102c97b6f5 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'show', '--no-all-versions', 'ea-utils'] 0m47.2s INFO: apt-cache knows about the following packages: ea-utils 0m47.2s INFO: Running scripts pre_install 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_database-server'] 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_database-server'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_exceptions'] 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_exceptions'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_extras'] 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_extras'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy'] 0m47.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy', 'ea-utils'] 0m47.4s DUMP: ea-utils: Installed: 1.1.2+dfsg-9+b2 Candidate: 1.1.2+dfsg-9+b2 Version table: *** 1.1.2+dfsg-9+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy', 'ea-utils'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-y', 'install', 'ea-utils'] 0m47.8s DUMP: Reading package lists... Building dependency tree... Reading state information... ea-utils is already the newest version (1.1.2+dfsg-9+b2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-y', 'install', 'ea-utils'] 0m47.8s INFO: Running scripts post_install 0m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_install_exceptions'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_install_exceptions'] 0m47.9s INFO: Running scripts post_distupgrade 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_exceptions'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_exceptions'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_zz_backports'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_distupgrade_zz_backports'] 0m47.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m48.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m48.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m49.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m49.6s INFO: Running scripts pre_install 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_database-server'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_database-server'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_exceptions'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_exceptions'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_extras'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_extras'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy'] 0m49.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy', 'ea-utils'] 0m49.8s DUMP: ea-utils: Installed: 1.1.2+dfsg-9+b2 Candidate: 1.1.2+dfsg-9+b2 Version table: *** 1.1.2+dfsg-9+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-cache', 'policy', 'ea-utils'] 0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-y', 'install', 'ea-utils=1.1.2+dfsg-9+b2'] 0m50.3s DUMP: Reading package lists... Building dependency tree... Reading state information... ea-utils is already the newest version (1.1.2+dfsg-9+b2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', '-y', 'install', 'ea-utils=1.1.2+dfsg-9+b2'] 0m50.3s INFO: Running scripts post_install 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_install_exceptions'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_install_exceptions'] 0m50.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m51.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 0m52.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', '-ac', '--ignore-obsolete'] 0m54.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', '-ac', '--ignore-obsolete'] 0m54.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.4s DUMP: 0.15.6 0m54.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m54.4s INFO: Running adequate version 0.15.6 now. 0m54.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'ea-utils'] 0m54.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'ea-utils'] 0m54.6s INFO: Running scripts pre_remove 0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m57.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_exceptions'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/pre_remove_exceptions'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.4s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.2~rc2-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed ca-certificates ca-certificates 20211016 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1 install ok installed ea-utils ea-utils 1.1.2+dfsg-9+b2 install ok installed findutils findutils 4.9.0-3 install ok installed fontconfig fontconfig 2.13.1-4.5 install ok installed fontconfig-config fontconfig-config 2.13.1-4.5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-2 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-2 install ok installed gpgv gpgv 2.2.39-1 install ok installed grep grep 3.8-2 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblas3:amd64 libblas3 3.10.1-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b4 install ok installed libbsd0:amd64 libbsd0 0.11.6-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-8 install ok installed libc6:amd64 libc6 2.34-8 install ok installed libcairo2:amd64 libcairo2 1.16.0-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libcurl4:amd64 libcurl4 7.85.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libdeflate0:amd64 libdeflate0 1.12-1 install ok installed libexpat1:amd64 libexpat1 2.4.8-2 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.5 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.73.3-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgomp1:amd64 libgomp1 12.2.0-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgsl27:amd64 libgsl27 2.7.1+dfsg-3 install ok installed libgslcblas0:amd64 libgslcblas0 2.7.1+dfsg-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1+b1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu71:amd64 libicu71 71.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-2 install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20-1 install ok installed liblapack3:amd64 liblapack3 3.10.1-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.12+dfsg-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.49.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.10+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.10+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.10+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-5 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-2 install ok installed libreadline8:amd64 libreadline8 8.2~rc2-2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.6~rc1-1 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.12+dfsg-1 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtiff5:amd64 libtiff5 4.4.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.12-1+b1 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.1-2 install ok installed libx11-data libx11-data 2:1.8.1-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.4-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed littler littler 0.3.16-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.6~rc1-1 install ok installed lsb-base lsb-base 11.4 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed node-normalize.css node-normalize.css 8.0.1-5 install ok installed openssl openssl 3.0.5-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed r-base-core r-base-core 4.2.1-2 install ok installed r-cran-acepack r-cran-acepack 1.4.1-2+b5 install ok installed r-cran-backports r-cran-backports 1.4.1-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3 install ok installed r-cran-checkmate r-cran-checkmate 2.1.0-1 install ok installed r-cran-chron r-cran-chron 2.3-57-1 install ok installed r-cran-cli r-cran-cli 3.4.0-1 install ok installed r-cran-cluster r-cran-cluster 2.1.4-1 install ok installed r-cran-colorspace r-cran-colorspace 2.0-3+dfsg-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.4.2-1 install ok installed r-cran-data.table r-cran-data.table 1.14.2+dfsg-1 install ok installed r-cran-deldir r-cran-deldir 1.0-6-1 install ok installed r-cran-digest r-cran-digest 0.6.29-1 install ok installed r-cran-dplyr r-cran-dplyr 1.0.10-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.2-2 install ok installed r-cran-evaluate r-cran-evaluate 0.16-1 install ok installed r-cran-fansi r-cran-fansi 1.0.3-1 install ok installed r-cran-farver r-cran-farver 2.1.1-1 install ok installed r-cran-fastmap r-cran-fastmap 1.1.0-1 install ok installed r-cran-foreign r-cran-foreign 0.8.82-1 install ok installed r-cran-formula r-cran-formula 1.2-4-1 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-getopt r-cran-getopt 1.20.3-3 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.3.6+dfsg-1 install ok installed r-cran-glue r-cran-glue 1.6.2-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-3 install ok installed r-cran-gtable r-cran-gtable 0.3.0+dfsg-2 install ok installed r-cran-highr r-cran-highr 0.9+dfsg-1 install ok installed r-cran-hmisc r-cran-hmisc 4.7-1-1 install ok installed r-cran-htmltable r-cran-htmltable 2.4.1-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.3-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.5.4+dfsg-1 install ok installed r-cran-interp r-cran-interp 1.1-3-1 install ok installed r-cran-isoband r-cran-isoband 0.2.5-1+b1 install ok installed r-cran-jpeg r-cran-jpeg 0.1-9-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.8.0+dfsg-1 install ok installed r-cran-knitr r-cran-knitr 1.40+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lattice r-cran-lattice 0.20-45-3 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-30-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.2+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.16-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-58.1-1 install ok installed r-cran-matrix r-cran-matrix 1.5-1-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-40-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.159-1 install ok installed r-cran-nnet r-cran-nnet 7.3-17-1 install ok installed r-cran-pillar r-cran-pillar 1.8.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.2-2 install ok installed r-cran-png r-cran-png 0.1-7-4 install ok installed r-cran-purrr r-cran-purrr 0.3.4-1+b1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.9-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.3.9.2-1 install ok installed r-cran-rlang r-cran-rlang 1.0.5-1 install ok installed r-cran-rpart r-cran-rpart 4.1.16-1+b1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.14-1 install ok installed r-cran-scales r-cran-scales 1.2.1-1 install ok installed r-cran-stringi r-cran-stringi 1.7.8-1 install ok installed r-cran-stringr r-cran-stringr 1.4.1-1 install ok installed r-cran-survival r-cran-survival 3.4-0-1 install ok installed r-cran-tibble r-cran-tibble 3.1.8+dfsg-1 install ok installed r-cran-tidyr r-cran-tidyr 1.2.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.1.2+dfsg-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.2-1 install ok installed r-cran-vctrs r-cran-vctrs 0.4.1-2 install ok installed r-cran-viridis r-cran-viridis 0.6.2-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.1-1 install ok installed r-cran-withr r-cran-withr 2.5.0-1 install ok installed r-cran-xfun r-cran-xfun 0.32+dfsg-1 install ok installed r-cran-yaml r-cran-yaml 2.3.5-1 install ok installed readline-common readline-common 8.2~rc2-2 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sysvinit-utils sysvinit-utils 3.05-5 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-27 install ok installed usr-is-merged usr-is-merged 30+nmu1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu71:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'node-normalize.css', 'openssl', 'r-base-core', 'r-cran-acepack', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-foreign', 'r-cran-formula', 'r-cran-generics', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-yaml', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'ea-utils'] 0m59.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates ea-utils fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-mathjax libblas3 libbrotli1 libbsd0 libcairo2 libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu71 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblerc4 libmd0 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl3 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-common libtirpc3 libtk8.6 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 littler node-normalize.css openssl r-base-core r-cran-acepack r-cran-backports r-cran-base64enc r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-colorspace r-cran-cpp11 r-cran-data.table r-cran-deldir r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-foreign r-cran-formula r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-nnet r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rlang r-cran-rpart r-cran-rstudioapi r-cran-scales r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun r-cran-yaml readline-common sensible-utils ucf unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 165 to remove and 0 not upgraded. After this operation, 304 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21649 files and directories currently installed.) Removing ea-utils (1.1.2+dfsg-9+b2) ... Removing r-cran-hmisc (4.7-1-1) ... Removing r-cran-rpart (4.1.16-1+b1) ... Removing r-cran-survival (3.4-0-1) ... Removing r-cran-latticeextra (0.6-30-1) ... Removing r-cran-interp (1.1-3-1) ... Removing r-cran-rcppeigen (0.3.3.9.2-1) ... Removing r-cran-viridis (0.6.2-1) ... Removing r-cran-ggplot2 (3.3.6+dfsg-1) ... Removing r-cran-mgcv (1.8-40-1) ... Removing r-cran-matrix (1.5-1-1) ... Removing r-cran-rcpp (1.0.9-1) ... Removing r-cran-scales (1.2.1-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-cran-htmltable (2.4.1-1) ... Removing r-cran-knitr (1.40+dfsg-1) ... Removing libjs-bootstrap (3.4.1+dfsg-2) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... dpkg: warning: while removing fonts-mathjax, directory '/usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf' not empty so not removed dpkg: warning: while removing fonts-mathjax, directory '/usr/share/fonts/opentype' not empty so not removed Removing r-cran-data.table (1.14.2+dfsg-1) ... Removing libgsl27:amd64 (2.7.1+dfsg-3) ... Removing libgslcblas0:amd64 (2.7.1+dfsg-3) ... Removing r-cran-stringr (1.4.1-1) ... Removing r-cran-stringi (1.7.8-1) ... Removing r-cran-jpeg (0.1-9-1) ... Removing r-cran-highr (0.9+dfsg-1) ... Removing libjs-highlight.js (9.18.5+dfsg1-2) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing r-cran-png (0.1-7-4) ... Removing littler (0.3.16-1) ... Removing node-normalize.css (8.0.1-5) ... dpkg: warning: while removing node-normalize.css, directory '/usr/share/javascript' not empty so not removed Removing r-cran-acepack (1.4.1-2+b5) ... Removing r-cran-checkmate (2.1.0-1) ... Removing r-cran-backports (1.4.1-1) ... Removing r-cran-htmlwidgets (1.5.4+dfsg-1) ... Removing r-cran-htmltools (0.5.3-1) ... Removing r-cran-base64enc (0.1-3-3) ... Removing r-cran-chron (2.3-57-1) ... Removing r-cran-tidyr (1.2.1-1) ... Removing r-cran-dplyr (1.0.10-1) ... Removing r-cran-tidyselect (1.1.2+dfsg-1) ... Removing r-cran-tibble (3.1.8+dfsg-1) ... Removing r-cran-pillar (1.8.1+dfsg-1) ... Removing r-cran-cluster (2.1.4-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.0-3+dfsg-1) ... Removing r-cran-cpp11 (0.4.2-1) ... Removing r-cran-deldir (1.0-6-1) ... Removing r-cran-digest (0.6.29-1) ... Removing r-cran-ellipsis (0.3.2-2) ... Removing r-cran-evaluate (0.16-1) ... Removing r-cran-fansi (1.0.3-1) ... Removing r-cran-farver (2.1.1-1) ... Removing r-cran-fastmap (1.1.0-1) ... Removing r-cran-foreign (0.8.82-1) ... Removing r-cran-formula (1.2-4-1) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-getopt (1.20.3-3) ... Removing r-cran-lifecycle (1.0.2+dfsg-1) ... Removing r-cran-gridextra (2.3-3) ... Removing r-cran-gtable (0.3.0+dfsg-2) ... Removing r-cran-isoband (0.2.5-1+b1) ... Removing r-cran-jsonlite (1.8.0+dfsg-1) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-nlme (3.1.159-1) ... Removing r-cran-lattice (0.20-45-3) ... Removing r-cran-littler (0.3.16-1) ... Removing r-cran-purrr (0.3.4-1+b1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-58.1-1) ... Removing r-cran-nnet (7.3-17-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.2-2) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rstudioapi (0.14-1) ... Removing r-cran-utf8 (1.2.2-1) ... Removing r-cran-viridislite (0.4.1-1) ... Removing r-cran-withr (2.5.0-1) ... Removing r-cran-xfun (0.32+dfsg-1) ... Removing r-cran-yaml (2.3.5-1) ... Removing r-cran-vctrs (0.4.1-2) ... Removing r-cran-cli (3.4.0-1) ... Removing r-cran-glue (1.6.2-1) ... Removing r-cran-rlang (1.0.5-1) ... Removing r-base-core (4.2.1-2) ... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.50.10+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.10+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.10+ds-1) ... Removing fontconfig (2.13.1-4.5) ... Removing libtk8.6:amd64 (8.6.12-1+b1) ... Removing libxft2:amd64 (2.3.4-1) ... Removing libcairo2:amd64 (1.16.0-6) ... Removing libfontconfig1:amd64 (2.13.1-4.5) ... Removing fontconfig-config (2.13.1-4.5) ... Removing fonts-dejavu-core (2.37-2) ... Removing liblapack3:amd64 (3.10.1-2) ... Removing libblas3:amd64 (3.10.1-2) ... Removing libharfbuzz0b:amd64 (2.7.4-1+b1) ... Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libcurl4:amd64 (7.85.0-1) ... Removing libbrotli1:amd64 (1.0.9-2+b4) ... Removing libxt6:amd64 (1:1.2.1-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2) ... Removing libtiff5:amd64 (4.4.0-4) ... Removing libdeflate0:amd64 (1.12-1) ... Removing libexpat1:amd64 (2.4.8-2) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libgfortran5:amd64 (12.2.0-2) ... Removing libglib2.0-0:amd64 (2.73.3-3) ... Removing libgomp1:amd64 (12.2.0-2) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20-1) ... Removing libicu71:amd64 (71.1-3) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1) ... Removing libkrb5-3:amd64 (1.20-1) ... Removing libk5crypto3:amd64 (1.20-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20-1) ... Removing libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Removing liblerc4:amd64 (4.0.0+ds-1) ... Removing libnghttp2-14:amd64 (1.49.0-1) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libpixman-1-0:amd64 (0.40.0-1) ... Removing libpng16-16:amd64 (1.6.37-5) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libquadmath0:amd64 (12.2.0-2) ... Removing libreadline8:amd64 (8.2~rc2-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-8) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing openssl (3.0.5-2) ... Removing libssl3:amd64 (3.0.5-2) ... Removing libtcl8.6:amd64 (8.6.12+dfsg-1) ... Removing libthai-data (0.1.29-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libwebp7:amd64 (1.2.2-2+b1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing readline-common (8.2~rc2-2) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Removing unzip (6.0-27) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-12) ... Removing libx11-6:amd64 (2:1.8.1-2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.6-1) ... Removing libmd0:amd64 (1.0.4-2) ... Removing libx11-data (2:1.8.1-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Processing triggers for libc-bin (2.34-8) ... 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'remove', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu71:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'node-normalize.css', 'openssl', 'r-base-core', 'r-cran-acepack', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-foreign', 'r-cran-formula', 'r-cran-generics', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-yaml', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'ea-utils'] 0m59.8s INFO: Running scripts post_remove 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_remove_exceptions'] 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_remove_exceptions'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu71:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'node-normalize.css', 'openssl', 'r-base-core', 'r-cran-acepack', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-foreign', 'r-cran-formula', 'r-cran-generics', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-yaml', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m0.7s DUMP: (Reading database ... 6646 files and directories currently installed.) Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.13.1-4.5) ... Purging configuration files for fontconfig-config (2.13.1-4.5) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.73.3-3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgsl27 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20-1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu71 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28+b1) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove node-normalize.css which isn't installed Purging configuration files for openssl (3.0.5-2) ... Purging configuration files for r-base-core (4.2.1-2) ... dpkg: warning: ignoring request to remove r-cran-acepack which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-chron which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-deldir which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-getopt which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltable which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-interp which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-jpeg which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridis which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed Purging configuration files for readline-common (8.2~rc2-2) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-27) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu71:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'littler', 'node-normalize.css', 'openssl', 'r-base-core', 'r-cran-acepack', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-foreign', 'r-cran-formula', 'r-cran-generics', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-yaml', 'readline-common', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--purge', 'ea-utils'] 1m0.7s DUMP: dpkg: warning: ignoring request to remove ea-utils which isn't installed 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--purge', 'ea-utils'] 1m0.7s INFO: Running scripts post_purge 1m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_purge_exceptions'] 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_purge_exceptions'] 1m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--purge', '--pending'] 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--purge', '--pending'] 1m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--remove', '--pending'] 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg', '--remove', '--pending'] 1m0.8s INFO: Running scripts post_test 1m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_test_exceptions'] 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'tmp/scripts/post_test_exceptions'] 1m0.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 1m1.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg-divert', '--list'] 1m1.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'dpkg-divert', '--list'] 1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'clean'] 1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x', 'apt-get', 'clean'] 1m1.3s DEBUG: Recording chroot state 1m1.9s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-glyphicons-halflings, fonts-mathjax, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-glyphicons-halflings, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/javascript/ owned by: node-normalize.css, libjs-jquery-datatables, libjs-bootstrap, libjs-mathjax, fonts-mathjax, libjs-jquery, libjs-highlight.js /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned 1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/shm'] 1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/shm'] 1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/console'] 1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/console'] 1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/ptmx'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/ptmx'] 1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/pts'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/dev/pts'] 1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/proc'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x/proc'] 1m2.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 1m2.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqpe40j6x'] 1m2.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpqpe40j6x 1m2.4s INFO: PASS: Upgrading between Debian distributions. 1m2.4s INFO: PASS: All tests. 1m2.4s INFO: piuparts run ends. ret=0 End: 2022-09-19 00:49:54 GMT