Start: 2026-10-08 04:05:01 GMT [testing] Package: fastqtl Source: fastqtl (2.184+v7+dfsg-5) Version: 2.184+v7+dfsg-5+b1 Installed-Size: 777 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblas3 | libblas.so.3, libboost-iostreams1.90.0 (>= 1.90.0), libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgsl28 (>= 2.8+dfsg), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1), r-mathlib (>= 4.5.2), python3:any, python3 Recommends: r-bioc-qvalue, r-cran-argparser Suggests: fastqtl-doc Description: Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes Homepage: http://fastqtl.sourceforge.net/ Description-md5: 99b28ce00f41a878b63333da47a6ceb9 Tag: field::biology, field::biology:bioinformatics, interface::commandline, role::program, use::analysing Section: science Priority: optional Filename: pool/main/f/fastqtl/fastqtl_2.184+v7+dfsg-5+b1_amd64.deb Size: 241128 MD5sum: 0ccbf6c17cdd42dfceeb0261b72c572b SHA256: 8cbdc3ce1db2bf68936205784134ffb1f2bb2d8e76510c4670bd046bb35b499f [sid] Package: fastqtl Source: fastqtl (2.184+v7+dfsg-5) Version: 2.184+v7+dfsg-5+b2 Installed-Size: 801 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblas3 | libblas.so.3, libboost-iostreams1.92.0 (>= 1.92.0), libboost-program-options1.92.0 (>= 1.92.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgsl28 (>= 2.8+dfsg), libhts3t64 (>= 1.24), libstdc++6 (>= 13.1), python3:any, python3 Recommends: r-bioc-qvalue, r-cran-argparser Suggests: fastqtl-doc Description: Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes Homepage: http://fastqtl.sourceforge.net/ Description-md5: 99b28ce00f41a878b63333da47a6ceb9 Tag: field::biology, field::biology:bioinformatics, interface::commandline, role::program, use::analysing Section: science Priority: optional Filename: pool/main/f/fastqtl/fastqtl_2.184+v7+dfsg-5+b2_amd64.deb Size: 247448 MD5sum: f7805be85adb01750bcdaa1e188b3e87 SHA256: 55f16e2d8511aa1e07654eb6f8c4aded4d8c9bef6573b0719bac05f802ba2902 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt fastqtl=2.184+v7+dfsg-5+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt fastqtl=2.184+v7+dfsg-5+b2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.111+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5fpyw2ij 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5fpyw2ij 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/forky-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5fpyw2ij/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9992 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6617 kB] Fetched 16.8 MB in 1s (14.7 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmd0 libmount1 libsmartcols1 libuuid1 login login.defs mount passwd tzdata util-linux 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4079 kB of archives. After this operation, 98.3 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:5 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:6 http://deb.debian.org/debian forky/main amd64 mount amd64 2.42.4-1 [172 kB] Get:7 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:9 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:10 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.20.2-2 [223 kB] Get:11 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.20.2-2 [1300 kB] Get:12 http://deb.debian.org/debian forky/main amd64 tzdata all 2026e-1 [262 kB] Preconfiguring packages ... Fetched 4079 kB in 0s (36.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libuuid1_2.42.4-1_amd64.deb ... Unpacking libuuid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libuuid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libblkid1_2.42.4-1_amd64.deb ... Unpacking libblkid1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libblkid1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libmount1_2.42.4-1_amd64.deb ... Unpacking libmount1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libmount1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.42.4-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.42.4-1) over (2.42.3-1) ... Setting up libsmartcols1:amd64 (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../util-linux_2.42.4-1_amd64.deb ... Unpacking util-linux (2.42.4-1) over (2.42.3-1) ... Setting up util-linux (2.42.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../mount_2.42.4-1_amd64.deb ... Unpacking mount (2.42.4-1) over (2.42.3-1) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.42.4-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42.4-1) over (1:4.16.0-2+really2.42.3-1) ... Preparing to unpack .../libmd0_1.3.0-1_amd64.deb ... Unpacking libmd0:amd64 (1.3.0-1) over (1.2.0-2) ... Setting up libmd0:amd64 (1.3.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4960 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.42.4-1_amd64.deb ... Unpacking bsdutils (1:2.42.4-1) over (1:2.42.3-1) ... Preparing to unpack .../login.defs_1%3a4.20.2-2_all.deb ... Unpacking login.defs (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../passwd_1%3a4.20.2-2_amd64.deb ... Unpacking passwd (1:4.20.2-2) over (1:4.19.3-2) ... Preparing to unpack .../tzdata_2026e-1_all.deb ... Unpacking tzdata (2026e-1) over (2026c-1) ... Setting up bsdutils (1:2.42.4-1) ... Setting up login.defs (1:4.20.2-2) ... Installing new version of config file /etc/login.defs ... Setting up tzdata (2026e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 8 04:05:05 UTC 2026. Universal Time is now: Thu Oct 8 04:05:05 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.20.2-2) ... Setting up mount (2.42.4-1) ... Setting up login (1:4.16.0-2+really2.42.4-1) ... Processing triggers for libc-bin (2.43-6) ... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s DUMP: 7d45ff6dc1126fc76b697b2d4a2573a2 - 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.0s INFO: Running scripts post_setup 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.2-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.20.2-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m6.2s INFO: Running scripts is_testable 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/is_testable_uninstallable'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/is_testable_uninstallable'] 0m6.2s INFO: Running scripts pre_test 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_test_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_test_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_test_root_password'] 0m6.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_test_root_password'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'show', '--no-all-versions', 'fastqtl'] 0m6.6s DUMP: Package: fastqtl Source: fastqtl (2.184+v7+dfsg-5) Version: 2.184+v7+dfsg-5+b1 Installed-Size: 777 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblas3 | libblas.so.3, libboost-iostreams1.90.0 (>= 1.90.0), libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgsl28 (>= 2.8+dfsg), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1), r-mathlib (>= 4.5.2), python3:any, python3 Recommends: r-bioc-qvalue, r-cran-argparser Suggests: fastqtl-doc Description-en: Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels. Description-md5: 99b28ce00f41a878b63333da47a6ceb9 Homepage: http://fastqtl.sourceforge.net/ Tag: field::biology, field::biology:bioinformatics, interface::commandline, role::program, use::analysing Section: science Priority: optional Filename: pool/main/f/fastqtl/fastqtl_2.184+v7+dfsg-5+b1_amd64.deb Size: 241128 MD5sum: 0ccbf6c17cdd42dfceeb0261b72c572b SHA256: 8cbdc3ce1db2bf68936205784134ffb1f2bb2d8e76510c4670bd046bb35b499f 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'show', '--no-all-versions', 'fastqtl'] 0m6.6s INFO: apt-cache knows about the following packages: fastqtl 0m6.6s INFO: Running scripts pre_install 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_database-server'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_exceptions'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_exceptions'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_extras'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_extras'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy'] 0m6.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy', 'fastqtl'] 0m6.7s DUMP: fastqtl: Installed: (none) Candidate: 2.184+v7+dfsg-5+b1 Version table: 2.184+v7+dfsg-5+b1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy', 'fastqtl'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-y', 'install', 'fastqtl'] 0m12.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libblas3 libboost-iostreams1.90.0 libboost-program-options1.90.0 libbrotli1 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls libdeflate0 libexpat1 libffi8 libgnutls30t64 libgsl28 libgslcblas0 libgssapi-krb5-2 libhts3t64 libhtscodecs2 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libtasn1-6 libunistring5 media-types netbase python3 python3-minimal python3.14 python3.14-minimal r-mathlib readline-common Suggested packages: fastqtl-doc gnutls-bin gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user python3-doc python3-tk python3-venv python3.14-venv python3.14-doc binutils binfmt-support readline-doc Recommended packages: r-bioc-qvalue r-cran-argparser ca-certificates krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules r-base-core r-base-dev The following NEW packages will be installed: fastqtl libblas3 libboost-iostreams1.90.0 libboost-program-options1.90.0 libbrotli1 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls libdeflate0 libexpat1 libffi8 libgnutls30t64 libgsl28 libgslcblas0 libgssapi-krb5-2 libhts3t64 libhtscodecs2 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libtasn1-6 libunistring5 media-types netbase python3 python3-minimal python3.14 python3.14-minimal r-mathlib readline-common 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After this operation, 59.9 MB of additional disk space will be used. 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4950 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.4-2_amd64.deb ... Unpacking libexpat1:amd64 (2.8.4-2) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.8-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.8-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.8-1) ... 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Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../08-libbrotli1_1.2.0-4+b1_amd64.deb ... Unpacking libbrotli1:amd64 (1.2.0-4+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../09-libunistring5_1.4.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.4.2-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../10-libidn2-0_2.3.8-5_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-5) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../11-libp11-kit0_0.26.5-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.26.5-1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../12-libtasn1-6_4.21.0-2+b1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.21.0-2+b1) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../13-libgnutls30t64_3.8.13-1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.13-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../14-libkrb5support0_1.22.1-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.22.1-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../15-libcom-err2_1.47.4-1+b2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.4-1+b2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../16-libk5crypto3_1.22.1-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.22.1-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../17-libkeyutils1_1.6.3-6+b2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6+b2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../18-libkrb5-3_1.22.1-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.22.1-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../19-libgssapi-krb5-2_1.22.1-3_amd64.deb ... 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Unpacking libhtscodecs2:amd64 (1.6.7-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../31-libhts3t64_1.22.1+ds2-1+b2_amd64.deb ... Unpacking libhts3t64:amd64 (1.22.1+ds2-1+b2) ... Selecting previously unselected package r-mathlib. Preparing to unpack .../32-r-mathlib_4.6.1-6_amd64.deb ... Unpacking r-mathlib (4.6.1-6) ... Selecting previously unselected package fastqtl. Preparing to unpack .../33-fastqtl_2.184+v7+dfsg-5+b1_amd64.deb ... Unpacking fastqtl (2.184+v7+dfsg-5+b1) ... Setting up libhtscodecs2:amd64 (1.6.7-1) ... Setting up media-types (14.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libgslcblas0:amd64 (2.8+dfsg-6+b1) ... Setting up libbrotli1:amd64 (1.2.0-4+b1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up libcom-err2:amd64 (1.47.4-1+b2) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.4.2-1) ... Setting up libboost-program-options1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up r-mathlib (4.6.1-6) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libgsl28:amd64 (2.8+dfsg-6+b1) ... Setting up readline-common (8.3-4) ... Setting up libboost-iostreams1.90.0:amd64 (1.90.0-6.1+b1) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up python3.14 (3.14.8-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up libcurl3t64-gnutls:amd64 (8.22.0-1) ... Setting up python3 (3.14.7-3) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1+b2) ... Setting up fastqtl (2.184+v7+dfsg-5+b1) ... Processing triggers for libc-bin (2.43-6) ... 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-y', 'install', 'fastqtl'] 0m12.2s INFO: Running scripts post_install 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_install_exceptions'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_install_exceptions'] 0m12.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m12.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m12.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp5fpyw2ij to sid 0m12.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m12.6s INFO: Running scripts pre_distupgrade 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'update'] 0m15.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7731 kB] Fetched 18.7 MB in 2s (9441 kB/s) Reading package lists... 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'update'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-yf', 'dist-upgrade'] 0m19.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libboost-iostreams1.90.0 libboost-program-options1.90.0 libcurl3t64-gnutls r-mathlib Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libboost-iostreams1.92.0 libboost-program-options1.92.0 The following packages will be upgraded: fastqtl findutils libaudit-common libaudit1 libc-bin libc-gconv-modules-extra libc6 libcurl3t64-gnutls libcurl4-gnutls libexpat1 libhts3t64 libpcre2-8-0 libssl3t64 login.defs openssl-provider-legacy passwd 16 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After this operation, 4822 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:9 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:11 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:12 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libboost-iostreams1.92.0 amd64 1.92.0-3 [248 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.92.0 amd64 1.92.0-3 [344 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.23.0~rc2-1 [463 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.24-3 [506 kB] Get:17 http://deb.debian.org/debian sid/main amd64 fastqtl amd64 2.184+v7+dfsg-5+b2 [247 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.23.0~rc2-1 [17.9 kB] Preconfiguring packages ... Fetched 11.2 MB in 0s (81.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6186 files and directories currently installed.) Preparing to unpack .../findutils_4.11.0-3_amd64.deb ... Unpacking findutils (4.11.0-3) over (4.11.0-2) ... Setting up findutils (4.11.0-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6185 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.6.5-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.6.5-1) over (3.6.4-1) ... Setting up libssl3t64:amd64 (3.6.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6185 files and directories currently installed.) Preparing to unpack .../0-login.defs_1%3a4.20.3-1_all.deb ... Unpacking login.defs (1:4.20.3-1) over (1:4.20.2-2) ... Preparing to unpack .../1-passwd_1%3a4.20.3-1_amd64.deb ... Unpacking passwd (1:4.20.3-1) over (1:4.20.2-2) ... Selecting previously unselected package libboost-iostreams1.92.0:amd64. Preparing to unpack .../2-libboost-iostreams1.92.0_1.92.0-3_amd64.deb ... Unpacking libboost-iostreams1.92.0:amd64 (1.92.0-3) ... Selecting previously unselected package libboost-program-options1.92.0:amd64. Preparing to unpack .../3-libboost-program-options1.92.0_1.92.0-3_amd64.deb ... Unpacking libboost-program-options1.92.0:amd64 (1.92.0-3) ... Preparing to unpack .../4-libcurl4-gnutls_8.23.0~rc2-1_amd64.deb ... Unpacking libcurl4-gnutls:amd64 (8.23.0~rc2-1) over (8.22.0-1) ... Preparing to unpack .../5-libhts3t64_1.24-3_amd64.deb ... Unpacking libhts3t64:amd64 (1.24-3) over (1.22.1+ds2-1+b2) ... Preparing to unpack .../6-fastqtl_2.184+v7+dfsg-5+b2_amd64.deb ... Unpacking fastqtl (2.184+v7+dfsg-5+b2) over (2.184+v7+dfsg-5+b1) ... Preparing to unpack .../7-libcurl3t64-gnutls_8.23.0~rc2-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.23.0~rc2-1) over (8.22.0-1) ... Setting up libexpat1:amd64 (2.9.0-1) ... Setting up libcurl4-gnutls:amd64 (8.23.0~rc2-1) ... Setting up libboost-iostreams1.92.0:amd64 (1.92.0-3) ... Setting up login.defs (1:4.20.3-1) ... Setting up libcurl3t64-gnutls:amd64 (8.23.0~rc2-1) ... Setting up libboost-program-options1.92.0:amd64 (1.92.0-3) ... Setting up passwd (1:4.20.3-1) ... Setting up libhts3t64:amd64 (1.24-3) ... Setting up fastqtl (2.184+v7+dfsg-5+b2) ... Processing triggers for libselinux1:amd64 (3.11-2.1) ... Processing triggers for libc-bin (2.43-7) ... 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-yf', 'dist-upgrade'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.6s DUMP: 3e74c74fd9e5eb19cf29662c97d7865e - 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'show', '--no-all-versions', 'fastqtl'] 0m19.9s DUMP: Package: fastqtl Source: fastqtl (2.184+v7+dfsg-5) Version: 2.184+v7+dfsg-5+b2 Installed-Size: 801 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libblas3 | libblas.so.3, libboost-iostreams1.92.0 (>= 1.92.0), libboost-program-options1.92.0 (>= 1.92.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgsl28 (>= 2.8+dfsg), libhts3t64 (>= 1.24), libstdc++6 (>= 13.1), python3:any, python3 Recommends: r-bioc-qvalue, r-cran-argparser Suggests: fastqtl-doc Description-en: Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels. Description-md5: 99b28ce00f41a878b63333da47a6ceb9 Homepage: http://fastqtl.sourceforge.net/ Tag: field::biology, field::biology:bioinformatics, interface::commandline, role::program, use::analysing Section: science Priority: optional Filename: pool/main/f/fastqtl/fastqtl_2.184+v7+dfsg-5+b2_amd64.deb Size: 247448 MD5sum: f7805be85adb01750bcdaa1e188b3e87 SHA256: 55f16e2d8511aa1e07654eb6f8c4aded4d8c9bef6573b0719bac05f802ba2902 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'show', '--no-all-versions', 'fastqtl'] 0m19.9s INFO: apt-cache knows about the following packages: fastqtl 0m19.9s INFO: Running scripts pre_install 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy'] 0m19.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy', 'fastqtl'] 0m20.0s DUMP: fastqtl: Installed: 2.184+v7+dfsg-5+b2 Candidate: 2.184+v7+dfsg-5+b2 Version table: *** 2.184+v7+dfsg-5+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy', 'fastqtl'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-y', 'install', 'fastqtl'] 0m20.7s DUMP: Reading package lists... Building dependency tree... Reading state information... fastqtl is already the newest version (2.184+v7+dfsg-5+b2). Solving dependencies... The following packages were automatically installed and are no longer required: libboost-iostreams1.90.0 libboost-program-options1.90.0 libcurl3t64-gnutls r-mathlib Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-y', 'install', 'fastqtl'] 0m20.7s INFO: Running scripts post_install 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_install_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_install_exceptions'] 0m20.7s INFO: Running scripts post_distupgrade 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m21.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m21.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m21.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m21.9s INFO: Running scripts pre_install 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_database-server'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_database-server'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_exceptions'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_extras'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_extras'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy'] 0m22.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy', 'fastqtl'] 0m22.0s DUMP: fastqtl: Installed: 2.184+v7+dfsg-5+b2 Candidate: 2.184+v7+dfsg-5+b2 Version table: *** 2.184+v7+dfsg-5+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-cache', 'policy', 'fastqtl'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-y', 'install', 'fastqtl=2.184+v7+dfsg-5+b2'] 0m23.1s DUMP: Reading package lists... Building dependency tree... Reading state information... fastqtl is already the newest version (2.184+v7+dfsg-5+b2). Solving dependencies... The following packages were automatically installed and are no longer required: libboost-iostreams1.90.0 libboost-program-options1.90.0 libcurl3t64-gnutls r-mathlib Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', '-y', 'install', 'fastqtl=2.184+v7+dfsg-5+b2'] 0m23.1s INFO: Running scripts post_install 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_install_exceptions'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_install_exceptions'] 0m23.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m23.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m24.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', '-ac', '--ignore-obsolete'] 0m24.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', '-ac', '--ignore-obsolete'] 0m24.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.8s DUMP: 0.17.5+b5 0m24.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.8s INFO: Running adequate version 0.17.5+b5 now. 0m24.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'fastqtl'] 0m24.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'fastqtl'] 0m24.9s INFO: Running scripts pre_remove 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_exceptions'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/pre_remove_exceptions'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.9s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed fastqtl fastqtl 2.184+v7+dfsg-5+b2 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libboost-iostreams1.90.0:amd64 libboost-iostreams1.90.0 1.90.0-6.1+b1 install ok installed libboost-iostreams1.92.0:amd64 libboost-iostreams1.92.0 1.92.0-3 install ok installed libboost-program-options1.90.0:amd64 libboost-program-options1.90.0 1.90.0-6.1+b1 install ok installed libboost-program-options1.92.0:amd64 libboost-program-options1.92.0 1.92.0-3 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b2 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.23.0~rc2-1 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.23.0~rc2-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgsl28:amd64 libgsl28 2.8+dfsg-6+b1 install ok installed libgslcblas0:amd64 libgslcblas0 2.8+dfsg-6+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhts3t64:amd64 libhts3t64 1.24-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.7-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.8-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.8-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed python3 python3 3.14.7-3 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3.14 python3.14 3.14.8-1 install ok installed python3.14-minimal python3.14-minimal 3.14.8-1 install ok installed r-mathlib r-mathlib 4.6.1-6 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libboost-iostreams1.90.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.90.0:amd64', 'libboost-program-options1.92.0:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'r-mathlib', 'readline-common', 'fastqtl'] 0m27.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: fastqtl libblas3 libboost-iostreams1.90.0 libboost-iostreams1.92.0 libboost-program-options1.90.0 libboost-program-options1.92.0 libbrotli1 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls libdeflate0 libexpat1 libffi8 libgnutls30t64 libgsl28 libgslcblas0 libgssapi-krb5-2 libhts3t64 libhtscodecs2 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libtasn1-6 libunistring5 media-types netbase python3 python3-minimal python3.14 python3.14-minimal r-mathlib readline-common 0 upgraded, 0 newly installed, 50 to remove and 0 not upgraded. After this operation, 64.7 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6191 files and directories currently installed.) Removing fastqtl (2.184+v7+dfsg-5+b2) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libboost-iostreams1.90.0:amd64 (1.90.0-6.1+b1) ... Removing libboost-iostreams1.92.0:amd64 (1.92.0-3) ... Removing libboost-program-options1.90.0:amd64 (1.90.0-6.1+b1) ... Removing libboost-program-options1.92.0:amd64 (1.92.0-3) ... Removing libcurl3t64-gnutls:amd64 (8.23.0~rc2-1) ... Removing libhts3t64:amd64 (1.24-3) ... Removing libcurl4-gnutls:amd64 (8.23.0~rc2-1) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b2) ... Removing libdeflate0:amd64 (1.25-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.8-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.8-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libgsl28:amd64 (2.8+dfsg-6+b1) ... Removing libgslcblas0:amd64 (2.8+dfsg-6+b1) ... Removing libhtscodecs2:amd64 (1.6.7-1) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpython3.14-minimal:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing r-mathlib (4.6.1-6) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-7) ... 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libboost-iostreams1.90.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.90.0:amd64', 'libboost-program-options1.92.0:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'r-mathlib', 'readline-common', 'fastqtl'] 0m27.6s INFO: Running scripts post_remove 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_remove_exceptions'] 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_remove_exceptions'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--purge', 'libblas3:amd64', 'libboost-iostreams1.90.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.90.0:amd64', 'libboost-program-options1.92.0:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'r-mathlib', 'readline-common'] 0m27.6s DUMP: dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libboost-iostreams1.90.0 which is not installed dpkg: warning: ignoring request to remove libboost-iostreams1.92.0 which is not installed dpkg: warning: ignoring request to remove libboost-program-options1.90.0 which is not installed dpkg: warning: ignoring request to remove libboost-program-options1.92.0 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgsl28 which is not installed dpkg: warning: ignoring request to remove libgslcblas0 which is not installed (Reading database ... 4956 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libhts3t64 which is not installed dpkg: warning: ignoring request to remove libhtscodecs2 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.8-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.8-1) ... dpkg: warning: ignoring request to remove r-mathlib which is not installed Purging configuration files for readline-common (8.3-4) ... 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--purge', 'libblas3:amd64', 'libboost-iostreams1.90.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.90.0:amd64', 'libboost-program-options1.92.0:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgnutls30t64:amd64', 'libgsl28:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'media-types', 'netbase', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'r-mathlib', 'readline-common'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--purge', 'fastqtl'] 0m27.7s DUMP: dpkg: warning: ignoring request to remove fastqtl which is not installed 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--purge', 'fastqtl'] 0m27.7s INFO: Running scripts post_purge 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_purge_exceptions'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_purge_exceptions'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--purge', '--pending'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--purge', '--pending'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--remove', '--pending'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg', '--remove', '--pending'] 0m27.7s INFO: Running scripts post_test 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_test_exceptions'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'tmp/scripts/post_test_exceptions'] 0m27.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m28.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg-divert', '--list'] 0m28.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'dpkg-divert', '--list'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'clean'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij', 'apt-get', 'clean'] 0m28.0s DEBUG: Recording chroot state 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/shm'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/shm'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/console'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/console'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/ptmx'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/ptmx'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/pts'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/dev/pts'] 0m29.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/proc'] 0m29.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij/proc'] 0m29.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m29.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5fpyw2ij'] 0m29.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5fpyw2ij 0m29.4s INFO: PASS: Upgrading between Debian distributions. 0m29.4s INFO: PASS: All tests. 0m29.4s INFO: piuparts run ends. ret=0 End: 2026-10-08 04:05:30 GMT