Start: 2022-12-29 15:28:21 GMT [testing] Package: fitgcp Version: 0.0.20150429-4 Installed-Size: 23164 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-pysam Description: fitting genome coverage distributions with mixture models Homepage: http://sourceforge.net/projects/fitgcp/ Description-md5: 6d250046a14f2fb020b753ee88032582 Section: science Priority: optional Filename: pool/main/f/fitgcp/fitgcp_0.0.20150429-4_all.deb Size: 3676056 MD5sum: c83c525fbe2645afda8da887feadcf95 SHA256: d0686ab7318f8ed66e0958f6be6582617cf22db00c3b10199d7b473eb1e221e0 [sid] Package: fitgcp Version: 0.0.20150429-5 Installed-Size: 23164 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-pysam Description: fitting genome coverage distributions with mixture models Homepage: http://sourceforge.net/projects/fitgcp/ Description-md5: 6d250046a14f2fb020b753ee88032582 Section: science Priority: optional Filename: pool/main/f/fitgcp/fitgcp_0.0.20150429-5_all.deb Size: 3675556 MD5sum: a657acb87dccc3c25bda71f1017cd38e SHA256: 307132bcde037065d1602362f025c2d0fbc968351dd522c3d99b228d8ed5e437 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt fitgcp=0.0.20150429-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt fitgcp=0.0.20150429-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpt_5vcj0f 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpt_5vcj0f 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpt_5vcj0f/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'update'] 0m4.7s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8810 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5957 kB] Fetched 14.9 MB in 2s (7542 kB/s) Reading package lists... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'update'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s DUMP: be8ae58265148cebc7477d925b2f24e5 - 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.9s INFO: Running scripts post_setup 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_dummy_users'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.13 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-10 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-10 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-6 install ok installed perl-base perl-base 5.36.0-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 0m7.3s INFO: Running scripts is_testable 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s INFO: Running scripts pre_test 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_test_root_password'] 0m7.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_test_root_password'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'show', '--no-all-versions', 'fitgcp'] 0m7.6s DUMP: Package: fitgcp Version: 0.0.20150429-4 Installed-Size: 23164 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-pysam Description-en: fitting genome coverage distributions with mixture models Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses. . fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Description-md5: 6d250046a14f2fb020b753ee88032582 Homepage: http://sourceforge.net/projects/fitgcp/ Section: science Priority: optional Filename: pool/main/f/fitgcp/fitgcp_0.0.20150429-4_all.deb Size: 3676056 MD5sum: c83c525fbe2645afda8da887feadcf95 SHA256: d0686ab7318f8ed66e0958f6be6582617cf22db00c3b10199d7b473eb1e221e0 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'show', '--no-all-versions', 'fitgcp'] 0m7.6s INFO: apt-cache knows about the following packages: fitgcp 0m7.6s INFO: Running scripts pre_install 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_database-server'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_database-server'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_extras'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_extras'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy'] 0m7.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy', 'fitgcp'] 0m7.7s DUMP: fitgcp: Installed: (none) Candidate: 0.0.20150429-4 Version table: 0.0.20150429-4 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy', 'fitgcp'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-y', 'install', 'fitgcp'] 0m38.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhts3 libhtscodecs2 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python3 python3-all python3-all-dev python3-beniget python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-ply python3-pysam python3-pythran python3-scipy python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-12-locales cpp-12-doc g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc krb5-doc krb5-user libstdc++-12-doc libxsimd-doc python3-doc python3-tk python3-venv gfortran python-numpy-doc python3-pytest python3-setuptools python-ply-doc python-scipy-doc python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc readline-doc Recommended packages: manpages manpages-dev libc-devtools ca-certificates javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-pil The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 fitgcp g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhts3 libhtscodecs2 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python3 python3-all python3-all-dev python3-beniget python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-ply python3-pysam python3-pythran python3-scipy python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. 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Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.7-1 [2008 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-minimal amd64 3.10.9-1 [784 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.10-minimal amd64 3.10.9-1 [1951 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.10.6-3+b1 [25.9 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-1 [32.2 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-1 [78.6 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:12 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-1 [331 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [134 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.2 [68.5 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.2 [165 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.0-2 [838 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-stdlib amd64 3.10.9-1 [1684 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 python3.10 amd64 3.10.9-1 [509 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.10.6-3+b1 [8876 B] Get:23 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.10.6-3+b1 [25.5 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.1-1 [812 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.1-1 [2063 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.39.50.20221224-1 [2345 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.39.50.20221224-1 [570 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.39.50.20221224-1 [153 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.39.50.20221224-1 [89.9 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.39.50.20221224-1 [811 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.39.50.20221224-1 [2222 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.39.50.20221224-1 [64.4 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.2.1-2 [44.6 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-10 [9770 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-1 [20.0 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 65.5.0-1 [278 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.1-1 [1713 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.1-1 [567 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-10 [145 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-10 [793 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.23.5-2 [5706 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-10 [41.7 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-10 [116 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-10 [26.1 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-10 [9328 B] Get:53 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-10 [2194 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-10 [969 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-10 [2197 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-10 [883 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-10 [2437 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-10 [19.3 MB] Get:59 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-1 [5192 B] Get:60 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-6 [43.1 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.0.12-1 [1695 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-1 [118 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 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bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:75 http://deb.debian.org/debian bookworm/main amd64 libpython3.10 amd64 3.10.9-1 [1753 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-dev amd64 3.10.9-1 [4124 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.10.6-3+b1 [9152 B] Get:80 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.1-1 [1987 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.1-1 [4736 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.10.6-3+b1 [1080 B] Get:83 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.10.8-1 [139 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.10.6-3+b1 [1068 B] Get:86 http://deb.debian.org/debian bookworm/main amd64 python3.10-dev amd64 3.10.9-1 [508 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-2 [130 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.10.6-3+b1 [26.0 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.1-1 [615 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.10.6-3+b1 [1080 B] Get:93 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-11 [28.6 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.8.1-14+b1 [17.2 MB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-2+b1 [183 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.51.0-1 [71.5 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.87.0-1 [369 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.20.0+ds-1 [1678 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 fitgcp all 0.0.20150429-4 [3676 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 149 MB in 1s (179 MB/s) Selecting previously unselected package libssl3:amd64. 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libquadmath0:amd64 (12.2.0-10) ... Setting up libmpc3:amd64 (1.2.1-2) ... Setting up libatomic1:amd64 (12.2.0-10) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-10) ... Setting up libubsan1:amd64 (12.2.0-10) ... Setting up libcrypt-dev:amd64 (1:4.4.33-1) ... Setting up libasan8:amd64 (12.2.0-10) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libpython3.11-minimal:amd64 (3.11.1-1) ... Setting up libtsan2:amd64 (12.2.0-10) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.39.50.20221224-1) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-6) ... Setting up readline-common (8.2-1.2) ... Setting up libcc1-0:amd64 (12.2.0-10) ... Setting up liblsan0:amd64 (12.2.0-10) ... Setting up libitm1:amd64 (12.2.0-10) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Setting up libctf0:amd64 (2.39.50.20221224-1) ... Setting up python3.11-minimal (3.11.1-1) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-10) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Setting up libgprofng0:amd64 (2.39.50.20221224-1) ... Setting up libgcc-12-dev:amd64 (12.2.0-10) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up libjs-sphinxdoc (5.3.0-2) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Setting up binutils-x86-64-linux-gnu (2.39.50.20221224-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libcurl3-gnutls:amd64 (7.87.0-1) ... Setting up binutils (2.39.50.20221224-1) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-10) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.1-1) ... Setting up gcc (4:12.2.0-1) ... Setting up libpython3.10-stdlib:amd64 (3.10.9-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-6) ... Setting up libpython3-stdlib:amd64 (3.10.6-3+b1) ... Setting up python3.11 (3.11.1-1) ... Setting up libpython3.10:amd64 (3.10.9-1) ... Setting up python3.10 (3.10.9-1) ... Setting up libpython3.11:amd64 (3.11.1-1) ... Setting up libstdc++-12-dev:amd64 (12.2.0-10) ... Setting up python3 (3.10.6-3+b1) ... Setting up python3-decorator (5.1.1-3) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up g++-12 (12.2.0-10) ... Setting up python3-pkg-resources (65.5.0-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-18.1) ... Setting up python3-pysam (0.20.0+ds-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.10.6-3+b1) ... Setting up python3-beniget (0.4.1-3) ... Setting up libpython3.11-dev:amd64 (3.11.1-1) ... Setting up libpython3.10-dev:amd64 (3.10.9-1) ... Setting up python3-numpy (1:1.23.5-2) ... Setting up python3.10-dev (3.10.9-1) ... Setting up g++ (4:12.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.10.6-3+b1) ... Setting up python3.11-dev (3.11.1-1) ... Setting up libpython3-all-dev:amd64 (3.10.6-3+b1) ... Setting up python3-dev (3.10.6-3+b1) ... Setting up python3-all-dev (3.10.6-3+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.8.1-14+b1) ... Setting up fitgcp (0.0.20150429-4) ... Processing triggers for libc-bin (2.36-6) ... 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-y', 'install', 'fitgcp'] 0m38.1s INFO: Running scripts post_install 0m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_install_exceptions'] 0m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_install_exceptions'] 0m38.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 0m39.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 0m39.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpt_5vcj0f to sid 0m39.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m39.5s INFO: Running scripts pre_distupgrade 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_exceptions'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_exceptions'] 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'update'] 0m43.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9378 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6946 kB] Fetched 16.5 MB in 3s (5004 kB/s) Reading package lists... 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'update'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-yf', 'dist-upgrade'] 0m59.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash cpp-12 fitgcp g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libgcc-12-dev libgcc-s1 libgfortran5 libgomp1 libitm1 liblsan0 libmpc3 libmpfr6 libncursesw6 libp11-kit0 libquadmath0 libstdc++-12-dev libstdc++6 libtinfo6 libtsan2 libubsan1 libzstd1 ncurses-base ncurses-bin python3-pkg-resources python3-pysam python3-scipy tar 36 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 86.0 MB of archives. After this operation, 2992 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2-2+b2 [1490 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3+20221224-2 [421 kB] Get:3 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.36-7 [1899 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.36-7 [43.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 12.2.0-11 [883 kB] Get:7 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-11 [37.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-11 [49.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 12.2.0-11 [116 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 12.2.0-11 [26.1 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 12.2.0-11 [9316 B] Get:12 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 12.2.0-11 [2193 kB] Get:13 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 12.2.0-11 [969 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 12.2.0-11 [145 kB] Get:15 http://deb.debian.org/debian sid/main amd64 cpp-12 amd64 12.2.0-11 [9766 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 12.2.0-11 [41.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 gcc-12 amd64 12.2.0-11 [19.3 MB] Get:18 http://deb.debian.org/debian sid/main amd64 g++-12 amd64 12.2.0-11 [10.7 MB] Get:19 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.2.0-11 [2047 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.2.0-11 [2436 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 12.2.0-11 [2197 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 12.2.0-11 [793 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-11 [614 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.1.1-1 [665 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg2-2 [283 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.36-7 [2753 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.36-7 [605 kB] Get:29 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3+20221224-2 [260 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.3+20221224-2 [134 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3+20221224-2 [330 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.8.1-18 [17.2 MB] Get:34 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.20.0+ds-2 [2403 kB] Get:35 http://deb.debian.org/debian sid/main amd64 fitgcp all 0.0.20150429-5 [3676 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 65.5.0-1.1 [278 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.0 MB in 0s (197 MB/s) (Reading database ... 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Preparing to unpack .../11-libgcc-12-dev_12.2.0-11_amd64.deb ... Unpacking libgcc-12-dev:amd64 (12.2.0-11) over (12.2.0-10) ... Preparing to unpack .../12-libtsan2_12.2.0-11_amd64.deb ... Unpacking libtsan2:amd64 (12.2.0-11) over (12.2.0-10) ... Preparing to unpack .../13-libgfortran5_12.2.0-11_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-11) over (12.2.0-10) ... Preparing to unpack .../14-libstdc++6_12.2.0-11_amd64.deb ... Unpacking libstdc++6:amd64 (12.2.0-11) over (12.2.0-10) ... Setting up libstdc++6:amd64 (12.2.0-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34748 files and directories currently installed.) Preparing to unpack .../libmpfr6_4.1.1-1_amd64.deb ... Unpacking libmpfr6:amd64 (4.1.1-1) over (4.1.0-3) ... Preparing to unpack .../libmpc3_1.3.1-1_amd64.deb ... Unpacking libmpc3:amd64 (1.3.1-1) over (1.2.1-2) ... Preparing to unpack .../libzstd1_1.5.2+dfsg2-2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.2+dfsg2-2) over (1.5.2+dfsg-1) ... Setting up libzstd1:amd64 (1.5.2+dfsg2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34748 files and directories currently installed.) Preparing to unpack .../libc6_2.36-7_amd64.deb ... Unpacking libc6:amd64 (2.36-7) over (2.36-6) ... Setting up libc6:amd64 (2.36-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34748 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-7_amd64.deb ... Unpacking libc-bin (2.36-7) over (2.36-6) ... Setting up libc-bin (2.36-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34748 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3+20221224-2_all.deb ... Unpacking ncurses-base (6.3+20221224-2) over (6.3+20220423-2) ... Setting up ncurses-base (6.3+20221224-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34748 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.1-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.1-2) over (0.24.1-1) ... Setting up libp11-kit0:amd64 (0.24.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34748 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.3+20221224-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20221224-2) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.3+20221224-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3+20221224-2) over (6.3+20220423-2) ... Setting up libtinfo6:amd64 (6.3+20221224-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34748 files and directories currently installed.) Preparing to unpack .../python3-scipy_1.8.1-18_amd64.deb ... Unpacking python3-scipy (1.8.1-18) over (1.8.1-14+b1) ... Preparing to unpack .../python3-pysam_0.20.0+ds-2_amd64.deb ... Unpacking python3-pysam (0.20.0+ds-2) over (0.20.0+ds-1) ... Preparing to unpack .../fitgcp_0.0.20150429-5_all.deb ... Unpacking fitgcp (0.0.20150429-5) over (0.0.20150429-4) ... Preparing to unpack .../python3-pkg-resources_65.5.0-1.1_all.deb ... Unpacking python3-pkg-resources (65.5.0-1.1) over (65.5.0-1) ... Setting up python3-pkg-resources (65.5.0-1.1) ... Setting up python3-pysam (0.20.0+ds-2) ... Setting up libgomp1:amd64 (12.2.0-11) ... Setting up libmpfr6:amd64 (4.1.1-1) ... Setting up libquadmath0:amd64 (12.2.0-11) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-11) ... Setting up libncursesw6:amd64 (6.3+20221224-2) ... Setting up libgfortran5:amd64 (12.2.0-11) ... Setting up libubsan1:amd64 (12.2.0-11) ... Setting up libasan8:amd64 (12.2.0-11) ... Setting up libtsan2:amd64 (12.2.0-11) ... Setting up libc-dev-bin (2.36-7) ... Setting up libcc1-0:amd64 (12.2.0-11) ... Setting up liblsan0:amd64 (12.2.0-11) ... Setting up libitm1:amd64 (12.2.0-11) ... Setting up cpp-12 (12.2.0-11) ... Setting up python3-scipy (1.8.1-18) ... Setting up fitgcp (0.0.20150429-5) ... Setting up libgcc-12-dev:amd64 (12.2.0-11) ... Setting up libc6-dev:amd64 (2.36-7) ... Setting up libstdc++-12-dev:amd64 (12.2.0-11) ... Setting up gcc-12 (12.2.0-11) ... Setting up g++-12 (12.2.0-11) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-7) ... 0m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-yf', 'dist-upgrade'] 0m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m0.1s DUMP: 28b6b79a35572feafec944cb2e4cd8de - 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'show', '--no-all-versions', 'fitgcp'] 1m0.4s DUMP: Package: fitgcp Version: 0.0.20150429-5 Installed-Size: 23164 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-pysam Description-en: fitting genome coverage distributions with mixture models Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses. . fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Description-md5: 6d250046a14f2fb020b753ee88032582 Homepage: http://sourceforge.net/projects/fitgcp/ Section: science Priority: optional Filename: pool/main/f/fitgcp/fitgcp_0.0.20150429-5_all.deb Size: 3675556 MD5sum: a657acb87dccc3c25bda71f1017cd38e SHA256: 307132bcde037065d1602362f025c2d0fbc968351dd522c3d99b228d8ed5e437 1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'show', '--no-all-versions', 'fitgcp'] 1m0.4s INFO: apt-cache knows about the following packages: fitgcp 1m0.4s INFO: Running scripts pre_install 1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_database-server'] 1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_database-server'] 1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_exceptions'] 1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_exceptions'] 1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_extras'] 1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_extras'] 1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture'] 1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture'] 1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy'] 1m0.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy'] 1m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy', 'fitgcp'] 1m0.6s DUMP: fitgcp: Installed: 0.0.20150429-5 Candidate: 0.0.20150429-5 Version table: *** 0.0.20150429-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy', 'fitgcp'] 1m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-y', 'install', 'fitgcp'] 1m1.1s DUMP: Reading package lists... Building dependency tree... Reading state information... fitgcp is already the newest version (0.0.20150429-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-y', 'install', 'fitgcp'] 1m1.1s INFO: Running scripts post_install 1m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_install_exceptions'] 1m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_install_exceptions'] 1m1.1s INFO: Running scripts post_distupgrade 1m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_exceptions'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_exceptions'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_zz_backports'] 1m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_distupgrade_zz_backports'] 1m1.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m2.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m2.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m4.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m4.3s INFO: Running scripts pre_install 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_database-server'] 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_database-server'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_exceptions'] 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_exceptions'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_extras'] 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_extras'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture'] 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy'] 1m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy'] 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy', 'fitgcp'] 1m4.4s DUMP: fitgcp: Installed: 0.0.20150429-5 Candidate: 0.0.20150429-5 Version table: *** 0.0.20150429-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-cache', 'policy', 'fitgcp'] 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-y', 'install', 'fitgcp=0.0.20150429-5'] 1m4.9s DUMP: Reading package lists... Building dependency tree... Reading state information... fitgcp is already the newest version (0.0.20150429-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', '-y', 'install', 'fitgcp=0.0.20150429-5'] 1m4.9s INFO: Running scripts post_install 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_install_exceptions'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_install_exceptions'] 1m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m6.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m8.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', '-ac', '--ignore-obsolete'] 1m12.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', '-ac', '--ignore-obsolete'] 1m12.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m12.5s DUMP: 0.15.6 1m12.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m12.5s INFO: Running adequate version 0.15.6 now. 1m12.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'fitgcp'] 1m12.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'fitgcp'] 1m12.6s INFO: Running scripts pre_remove 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_exceptions'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/pre_remove_exceptions'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m16.4s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b2 install ok installed binutils binutils 2.39.50.20221224-1 install ok installed binutils-common:amd64 binutils-common 2.39.50.20221224-1 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.39.50.20221224-1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-1 install ok installed cpp-12 cpp-12 12.2.0-11 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.13 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed fitgcp fitgcp 0.0.20150429-5 install ok installed g++ g++ 4:12.2.0-1 install ok installed g++-12 g++-12 12.2.0-11 install ok installed gcc gcc 4:12.2.0-1 install ok installed gcc-12 gcc-12 12.2.0-11 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-11 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libasan8:amd64 libasan8 12.2.0-11 install ok installed libatomic1:amd64 libatomic1 12.2.0-11 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libbinutils:amd64 libbinutils 2.39.50.20221224-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-18.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-7 install ok installed libc-dev-bin libc-dev-bin 2.36-7 install ok installed libc6:amd64 libc6 2.36-7 install ok installed libc6-dev:amd64 libc6-dev 2.36-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-11 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.39.50.20221224-1 install ok installed libctf0:amd64 libctf0 2.39.50.20221224-1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.87.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-11 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-11 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-11 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgomp1:amd64 libgomp1 12.2.0-11 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.39.50.20221224-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhts3:amd64 libhts3 1.16+ds-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.3.0-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libisl23:amd64 libisl23 0.25-1 install ok installed libitm1:amd64 libitm1 12.2.0-11 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-2 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-11 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-2+b1 install ok installed liblsan0:amd64 liblsan0 12.2.0-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.1.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.3+20221224-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.51.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-6 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.10.6-3+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.10.6-3+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-3+b1 install ok installed libpython3.10:amd64 libpython3.10 3.10.9-1 install ok installed libpython3.10-dev:amd64 libpython3.10-dev 3.10.9-1 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.9-1 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.9-1 install ok installed libpython3.11:amd64 libpython3.11 3.11.1-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.1-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.1-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.1-1 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-11 install ok installed libreadline8:amd64 libreadline8 8.2-1.2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.0-2 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-11 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-11 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20221224-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtsan2:amd64 libtsan2 12.2.0-11 install ok installed libubsan1:amd64 libubsan1 12.2.0-11 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg2-2 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.0.12-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20221224-2 install ok installed ncurses-bin ncurses-bin 6.3+20221224-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-6 install ok installed perl-base perl-base 5.36.0-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-6 install ok installed python3 python3 3.10.6-3+b1 install ok installed python3-all python3-all 3.10.6-3+b1 install ok installed python3-all-dev python3-all-dev 3.10.6-3+b1 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-dev python3-dev 3.10.6-3+b1 install ok installed python3-distutils python3-distutils 3.10.8-1 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-lib2to3 python3-lib2to3 3.10.8-1 install ok installed python3-minimal python3-minimal 3.10.6-3+b1 install ok installed python3-numpy python3-numpy 1:1.23.5-2 install ok installed python3-pkg-resources python3-pkg-resources 65.5.0-1.1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-pysam python3-pysam 0.20.0+ds-2 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-scipy python3-scipy 1.8.1-18 install ok installed python3.10 python3.10 3.10.9-1 install ok installed python3.10-dev python3.10-dev 3.10.9-1 install ok installed python3.10-minimal python3.10-minimal 3.10.9-1 install ok installed python3.11 python3.11 3.11.1-1 install ok installed python3.11-dev python3.11-dev 3.11.1-1 install ok installed python3.11-minimal python3.11-minimal 3.11.1-1 install ok installed readline-common readline-common 8.2-1.2 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'fitgcp'] 1m19.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 fitgcp g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhts3 libhtscodecs2 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python3 python3-all python3-all-dev python3-beniget python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-ply python3-pysam python3-pythran python3-scipy python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 0 newly installed, 113 to remove and 0 not upgraded. After this operation, 814 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34764 files and directories currently installed.) Removing fitgcp (0.0.20150429-5) ... Removing python3-scipy (1.8.1-18) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++ (4:12.2.0-1) ... Removing gcc (4:12.2.0-1) ... Removing cpp (4:12.2.0-1) ... Removing g++-12 (12.2.0-11) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-18.1) ... Removing libstdc++-12-dev:amd64 (12.2.0-11) ... Removing python3-numpy (1:1.23.5-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing python3-pysam (0.20.0+ds-2) ... Removing libhts3:amd64 (1.16+ds-3) ... Removing libcurl3-gnutls:amd64 (7.87.0-1) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing python3-all-dev (3.10.6-3+b1) ... Removing python3.11-dev (3.11.1-1) ... Removing libpython3-all-dev:amd64 (3.10.6-3+b1) ... Removing libpython3.11-dev:amd64 (3.11.1-1) ... Removing python3-dev (3.10.6-3+b1) ... Removing python3.10-dev (3.10.9-1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing python3-all (3.10.6-3+b1) ... Removing python3.11 (3.11.1-1) ... Removing python3.11-minimal (3.11.1-1) ... Removing libpython3.11:amd64 (3.11.1-1) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-11) ... Removing libpython3.11-stdlib:amd64 (3.11.1-1) ... Removing libhtscodecs2:amd64 (1.3.0-4) ... Removing libjs-sphinxdoc (5.3.0-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Removing libnghttp2-14:amd64 (1.51.0-1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libpython3-dev:amd64 (3.10.6-3+b1) ... Removing python3-distutils (3.10.8-1) ... Removing python3-pkg-resources (65.5.0-1.1) ... Removing libpython3.11-minimal:amd64 (3.11.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing python3-beniget (0.4.1-3) ... Removing python3-decorator (5.1.1-3) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.10.8-1) ... Removing python3-ply (3.11-5) ... Removing gcc-12 (12.2.0-11) ... Removing binutils (2.39.50.20221224-1) ... Removing binutils-x86-64-linux-gnu (2.39.50.20221224-1) ... Removing libgprofng0:amd64 (2.39.50.20221224-1) ... Removing libctf0:amd64 (2.39.50.20221224-1) ... Removing libbinutils:amd64 (2.39.50.20221224-1) ... Removing binutils-common:amd64 (2.39.50.20221224-1) ... Removing cpp-12 (12.2.0-11) ... Removing libgcc-12-dev:amd64 (12.2.0-11) ... Removing libasan8:amd64 (12.2.0-11) ... Removing libatomic1:amd64 (12.2.0-11) ... Removing libpython3.10-dev:amd64 (3.10.9-1) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-7) ... Removing libc-dev-bin (2.36-7) ... Removing libcc1-0:amd64 (12.2.0-11) ... Removing libcrypt-dev:amd64 (1:4.4.33-1) ... Removing libctf-nobfd0:amd64 (2.39.50.20221224-1) ... Removing libgomp1:amd64 (12.2.0-11) ... Removing libpython3.10:amd64 (3.10.9-1) ... Removing libisl23:amd64 (0.25-1) ... Removing libitm1:amd64 (12.2.0-11) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-11) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.1.1-1) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing python3 (3.10.6-3+b1) ... Removing libpython3-stdlib:amd64 (3.10.6-3+b1) ... Removing python3.10 (3.10.9-1) ... Removing python3-minimal (3.10.6-3+b1) ... Removing python3.10-minimal (3.10.9-1) ... Removing libquadmath0:amd64 (12.2.0-11) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libtsan2:amd64 (12.2.0-11) ... Removing libubsan1:amd64 (12.2.0-11) ... Removing linux-libc-dev:amd64 (6.0.12-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3.10-stdlib:amd64 (3.10.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20221224-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.10-minimal:amd64 (3.10.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.2) ... Removing libsqlite3-0:amd64 (3.40.0-2) ... Removing media-types (8.0.0) ... Removing readline-common (8.2-1.2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libssl3:amd64 (3.0.7-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-7) ... 1m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'fitgcp'] 1m19.5s INFO: Running scripts post_remove 1m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_remove_exceptions'] 1m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_remove_exceptions'] 1m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m19.6s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 8612 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.39.50.20221224-1) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.10 which isn't installed dpkg: warning: ignoring request to remove libpython3.10-dev which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.9-1) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.1-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (8.0.0) ... Purging configuration files for python3 (3.10.6-3+b1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed dpkg: warning: ignoring request to remove python3.10-dev which isn't installed Purging configuration files for python3.10-minimal (3.10.9-1) ... dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.1-1) ... Purging configuration files for readline-common (8.2-1.2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-numpy', 'python3-pkg-resources', 'python3-ply', 'python3-pysam', 'python3-pythran', 'python3-scipy', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--purge', 'fitgcp'] 1m19.6s DUMP: dpkg: warning: ignoring request to remove fitgcp which isn't installed 1m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--purge', 'fitgcp'] 1m19.6s INFO: Running scripts post_purge 1m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_purge_exceptions'] 1m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_purge_exceptions'] 1m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--purge', '--pending'] 1m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--purge', '--pending'] 1m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--remove', '--pending'] 1m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg', '--remove', '--pending'] 1m19.6s INFO: Running scripts post_test 1m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_test_exceptions'] 1m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'tmp/scripts/post_test_exceptions'] 1m19.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m20.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg-divert', '--list'] 1m20.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'dpkg-divert', '--list'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'clean'] 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f', 'apt-get', 'clean'] 1m20.1s DEBUG: Recording chroot state 1m21.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/shm'] 1m21.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/shm'] 1m21.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/console'] 1m21.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/console'] 1m21.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/ptmx'] 1m21.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/ptmx'] 1m21.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/pts'] 1m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/dev/pts'] 1m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/proc'] 1m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f/proc'] 1m21.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m21.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpt_5vcj0f'] 1m21.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpt_5vcj0f 1m21.3s INFO: PASS: Upgrading between Debian distributions. 1m21.3s INFO: PASS: All tests. 1m21.3s INFO: piuparts run ends. ret=0 End: 2022-12-29 15:29:42 GMT