Start: 2019-08-07 16:45:07 UTC [testing] Package: garlic Version: 1.6-3 Installed-Size: 844 Maintainer: Debichem Team Architecture: amd64 Depends: libc6 (>= 2.14), libx11-6 Suggests: garlic-doc, openbabel Description: visualization program for biomolecules Homepage: http://www.zucic.org/garlic/ Description-md5: 9a8e5d3dc375d53b824110c22a526364 Tag: field::biology, field::chemistry, interface::commandline, interface::graphical, interface::x11, role::program, scope::utility, uitoolkit::xlib, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/g/garlic/garlic_1.6-3_amd64.deb Size: 228020 MD5sum: e8fe82714fdc126e1e1d67ce120ce176 SHA256: a8a67b35a8ef112effd5a48d1762d99ffe235831147d256fc88161d370f67772 [sid] Package: garlic Source: garlic (1.6-3) Version: 1.6-3+b1 Installed-Size: 833 Maintainer: Debichem Team Architecture: amd64 Depends: libc6 (>= 2.14), libx11-6 Suggests: garlic-doc, openbabel Description: visualization program for biomolecules Homepage: http://www.zucic.org/garlic/ Description-md5: 9a8e5d3dc375d53b824110c22a526364 Tag: field::biology, field::chemistry, interface::commandline, interface::graphical, interface::x11, role::program, scope::utility, uitoolkit::xlib, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/g/garlic/garlic_1.6-3+b1_amd64.deb Size: 223492 MD5sum: 0a756fdf49b41385c4a3d612c48f4de1 SHA256: 2ed14441d2af2cb988cc5fc3b4864fbae36b603cce29b3ad3e3435ac42ae591d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt garlic=1.6-3+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.0.2~201907311723~1.0.1-11-g98f8c745 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt garlic=1.6-3+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpBTPf5V 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpBTPf5V 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ bullseye main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpBTPf5V/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'update'] 0m6.3s DUMP: Get:1 http://mirror-ubc.debian.org/debian bullseye InRelease [117 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages [7916 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main Translation-en [5970 kB] Fetched 14.0 MB in 3s (4016 kB/s) Reading package lists... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'update'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: coreutils libncursesw6 libpcre3 libtinfo6 ncurses-base ncurses-bin sysvinit-utils tar zlib1g 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5143 kB of archives. After this operation, 16.4 kB disk space will be freed. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 coreutils amd64 8.30-3+b1 [2708 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 ncurses-bin amd64 6.1+20190713-2 [414 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 tar amd64 1.30+dfsg-6+b1 [780 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 ncurses-base all 6.1+20190713-2 [263 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 sysvinit-utils amd64 2.95-4 [81.6 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 libtinfo6 amd64 6.1+20190713-2 [331 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.1+20190713-2 [133 kB] Get:8 http://mirror-ubc.debian.org/debian bullseye/main amd64 libpcre3 amd64 2:8.39-12+b1 [341 kB] Get:9 http://mirror-ubc.debian.org/debian bullseye/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+b1 [91.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5143 kB in 0s (59.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6469 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3+b1_amd64.deb ... Unpacking coreutils (8.30-3+b1) over (8.30-3) ... Setting up coreutils (8.30-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6470 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20190713-2_amd64.deb ... Unpacking ncurses-bin (6.1+20190713-2) over (6.1+20190713-1) ... Setting up ncurses-bin (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6470 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-6+b1_amd64.deb ... Unpacking tar (1.30+dfsg-6+b1) over (1.30+dfsg-6) ... Setting up tar (1.30+dfsg-6+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20190713-2_all.deb ... Unpacking ncurses-base (6.1+20190713-2) over (6.1+20190713-1) ... Setting up ncurses-base (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.95-4_amd64.deb ... Unpacking sysvinit-utils (2.95-4) over (2.95-2) ... Setting up sysvinit-utils (2.95-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20190713-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20190713-2) over (6.1+20190713-1) ... Setting up libtinfo6:amd64 (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20190713-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20190713-2) over (6.1+20190713-1) ... Setting up libncursesw6:amd64 (6.1+20190713-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6471 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-12+b1_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-12+b1) over (2:8.39-12) ... Setting up libpcre3:amd64 (2:8.39-12+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6472 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+b1) over (1:1.2.11.dfsg-1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+b1) ... Processing triggers for libc-bin (2.28-10) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.4s DUMP: c443f7cbcbe76dff10c19eeb35a0993c - 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.4s INFO: Running scripts post_setup 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_dummy_users'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_dummy_users'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_forbid_home'] 0m9.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_forbid_home'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_minimize'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_minimize'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_zz_backports'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_setup_zz_backports'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.72 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.3 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.3-3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190510-2 install ok installed gcc-9-base:amd64 gcc-9-base 9.1.0-10 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.45.3-3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.45.3-3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.1.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20190713-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.1-2 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.45.3-3 install ok installed libstdc++6:amd64 libstdc++6 9.1.0-10 install ok installed libsystemd0:amd64 libsystemd0 241-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.14-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20190713-2 install ok installed libudev1:amd64 libudev1 241-7 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.3-3 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20190713-2 install ok installed ncurses-bin ncurses-bin 6.1+20190713-2 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.95-4 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019b-1 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m10.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m10.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m10.6s INFO: Running scripts is_testable 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/is_testable_uninstallable'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/is_testable_uninstallable'] 0m10.6s INFO: Running scripts pre_test 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_test_exceptions'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_test_exceptions'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_test_root_password'] 0m10.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_test_root_password'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'show', '--no-all-versions', 'garlic'] 0m10.8s DUMP: Package: garlic Version: 1.6-3 Installed-Size: 844 Maintainer: Debichem Team Architecture: amd64 Depends: libc6 (>= 2.14), libx11-6 Suggests: garlic-doc, openbabel Description-en: visualization program for biomolecules Garlic is written for the investigation of membrane proteins. It may be used to visualize other proteins, as well as some geometric objects. This version of garlic recognizes PDB format version 2.1. Garlic may also be used to analyze protein sequences. . It only depends on the X libraries, no other libraries are needed. . Features include: - The slab position and thickness are visible in a small window. - Atomic bonds as well as atoms are treated as independent drawable objects. - The atomic and bond colors depend on position. Five mapping modes are available (as for slab). - Capable to display stereo image. - Capable to display other geometric objects, like membrane. - Atomic information is available for atom covered by the mouse pointer. No click required, just move the mouse pointer over the structure! - Capable to load more than one structure. - Capable to draw Ramachandran plot, helical wheel, Venn diagram, averaged hydrophobicity and hydrophobic moment plot. - The command prompt is available at the bottom of the main window. It is able to display one error message and one command string. Description-md5: 9a8e5d3dc375d53b824110c22a526364 Homepage: http://www.zucic.org/garlic/ Tag: field::biology, field::chemistry, interface::commandline, interface::graphical, interface::x11, role::program, scope::utility, uitoolkit::xlib, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/g/garlic/garlic_1.6-3_amd64.deb Size: 228020 MD5sum: e8fe82714fdc126e1e1d67ce120ce176 SHA256: a8a67b35a8ef112effd5a48d1762d99ffe235831147d256fc88161d370f67772 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'show', '--no-all-versions', 'garlic'] 0m10.8s INFO: apt-cache knows about the following packages: garlic 0m10.8s INFO: Running scripts pre_install 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_database-server'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_database-server'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_exceptions'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_exceptions'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy'] 0m10.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages release o=Debian,a=testing,n=bullseye,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy', 'garlic'] 0m10.9s DUMP: garlic: Installed: (none) Candidate: 1.6-3 Version table: 1.6-3 500 500 http://mirror-ubc.debian.org/debian bullseye/main amd64 Packages 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy', 'garlic'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-y', 'install', 'garlic'] 0m12.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libbsd0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 Suggested packages: garlic-doc openbabel The following NEW packages will be installed: garlic libbsd0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 1562 kB of archives. After this operation, 4761 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:2 http://mirror-ubc.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://mirror-ubc.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:4 http://mirror-ubc.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:5 http://mirror-ubc.debian.org/debian bullseye/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:6 http://mirror-ubc.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:7 http://mirror-ubc.debian.org/debian bullseye/main amd64 garlic amd64 1.6-3 [228 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1562 kB in 0s (34.1 MB/s) Selecting previously unselected package libxau6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6475 files and directories currently installed.) Preparing to unpack .../0-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../1-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../2-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../3-libxcb1_1.13.1-2_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../4-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../5-libx11-6_2%3a1.6.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.7-1) ... Selecting previously unselected package garlic. Preparing to unpack .../6-garlic_1.6-3_amd64.deb ... Unpacking garlic (1.6-3) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up garlic (1.6-3) ... Processing triggers for libc-bin (2.28-10) ... 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-y', 'install', 'garlic'] 0m12.0s INFO: Running scripts post_install 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_install_exceptions'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_install_exceptions'] 0m12.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m12.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m12.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpBTPf5V to sid 0m12.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m12.8s INFO: Running scripts pre_distupgrade 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'update'] 0m16.9s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [149 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8391 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6299 kB] Fetched 14.8 MB in 3s (4448 kB/s) Reading package lists... 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'update'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-yf', 'dist-upgrade'] 0m20.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpcre2-8-0 The following packages will be upgraded: bsdutils debconf e2fsprogs fdisk garlic libblkid1 libcom-err2 libext2fs2 libfdisk1 libgnutls30 libmount1 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libss2 libuuid1 logsave mount util-linux 21 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 5709 kB of archives. After this operation, 891 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 bsdutils amd64 1:2.34-0.1 [121 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libblkid1 amd64 2.34-0.1 [195 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.32-5+b1 [213 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libselinux1 amd64 2.9-2 [87.6 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libmount1 amd64 2.34-0.1 [210 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.34-0.1 [158 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libuuid1 amd64 2.34-0.1 [78.3 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libfdisk1 amd64 2.34-0.1 [236 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 fdisk amd64 2.34-0.1 [180 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 util-linux amd64 2.34-0.1 [1084 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 debconf all 1.5.73 [145 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 logsave amd64 1.45.3-4 [71.2 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 libext2fs2 amd64 1.45.3-4 [245 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 e2fsprogs amd64 1.45.3-4 [590 kB] Get:15 http://mirror-ubc.debian.org/debian sid/main amd64 mount amd64 2.34-0.1 [176 kB] Get:16 http://mirror-ubc.debian.org/debian sid/main amd64 libgnutls30 amd64 3.6.9-3 [1168 kB] Get:17 http://mirror-ubc.debian.org/debian sid/main amd64 libsepol1 amd64 2.9-2 [265 kB] Get:18 http://mirror-ubc.debian.org/debian sid/main amd64 libsemanage-common all 2.9-3 [20.8 kB] Get:19 http://mirror-ubc.debian.org/debian sid/main amd64 libsemanage1 amd64 2.9-3 [96.5 kB] Get:20 http://mirror-ubc.debian.org/debian sid/main amd64 garlic amd64 1.6-3+b1 [223 kB] Get:21 http://mirror-ubc.debian.org/debian sid/main amd64 libcom-err2 amd64 1.45.3-4 [70.5 kB] Get:22 http://mirror-ubc.debian.org/debian sid/main amd64 libss2 amd64 1.45.3-4 [74.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5709 kB in 0s (55.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6828 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1_amd64.deb ... Unpacking bsdutils (1:2.34-0.1) over (1:2.33.1-0.1) ... Setting up bsdutils (1:2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6828 files and directories currently installed.) Preparing to unpack .../libblkid1_2.34-0.1_amd64.deb ... Unpacking libblkid1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libblkid1:amd64 (2.34-0.1) ... Selecting previously unselected package libpcre2-8-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6828 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.32-5+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.32-5+b1) ... Setting up libpcre2-8-0:amd64 (10.32-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6836 files and directories currently installed.) Preparing to unpack .../libselinux1_2.9-2_amd64.deb ... Unpacking libselinux1:amd64 (2.9-2) over (2.8-1+b1) ... Setting up libselinux1:amd64 (2.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../libmount1_2.34-0.1_amd64.deb ... Unpacking libmount1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libmount1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.34-0.1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libsmartcols1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1_amd64.deb ... Unpacking libuuid1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libuuid1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.34-0.1_amd64.deb ... Unpacking libfdisk1:amd64 (2.34-0.1) over (2.33.1-0.1) ... Setting up libfdisk1:amd64 (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../fdisk_2.34-0.1_amd64.deb ... Unpacking fdisk (2.34-0.1) over (2.33.1-0.1) ... Setting up fdisk (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../util-linux_2.34-0.1_amd64.deb ... Unpacking util-linux (2.34-0.1) over (2.33.1-0.1) ... Setting up util-linux (2.34-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../debconf_1.5.73_all.deb ... Unpacking debconf (1.5.73) over (1.5.72) ... Setting up debconf (1.5.73) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../logsave_1.45.3-4_amd64.deb ... Unpacking logsave (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../libext2fs2_1.45.3-4_amd64.deb ... Unpacking libext2fs2:amd64 (1.45.3-4) over (1.45.3-3) ... Setting up libext2fs2:amd64 (1.45.3-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.3-4_amd64.deb ... Unpacking e2fsprogs (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../mount_2.34-0.1_amd64.deb ... Unpacking mount (2.34-0.1) over (2.33.1-0.1) ... Preparing to unpack .../libgnutls30_3.6.9-3_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.9-3) over (3.6.8-2) ... Setting up libgnutls30:amd64 (3.6.9-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../libsepol1_2.9-2_amd64.deb ... Unpacking libsepol1:amd64 (2.9-2) over (2.8-1) ... Setting up libsepol1:amd64 (2.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6835 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.9-3_all.deb ... Unpacking libsemanage-common (2.9-3) over (2.8-2) ... Setting up libsemanage-common (2.9-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6836 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.9-3_amd64.deb ... Unpacking libsemanage1:amd64 (2.9-3) over (2.8-2) ... Setting up libsemanage1:amd64 (2.9-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6836 files and directories currently installed.) Preparing to unpack .../garlic_1.6-3+b1_amd64.deb ... Unpacking garlic (1.6-3+b1) over (1.6-3) ... Preparing to unpack .../libcom-err2_1.45.3-4_amd64.deb ... Unpacking libcom-err2:amd64 (1.45.3-4) over (1.45.3-3) ... Preparing to unpack .../libss2_1.45.3-4_amd64.deb ... Unpacking libss2:amd64 (1.45.3-4) over (1.45.3-3) ... Setting up garlic (1.6-3+b1) ... Setting up libcom-err2:amd64 (1.45.3-4) ... Setting up libss2:amd64 (1.45.3-4) ... Setting up logsave (1.45.3-4) ... Setting up mount (2.34-0.1) ... Setting up e2fsprogs (1.45.3-4) ... Processing triggers for libc-bin (2.28-10) ... 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-yf', 'dist-upgrade'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.2s DUMP: 6aa9d846a84315fe6970cdd5abe3f15d - 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'show', '--no-all-versions', 'garlic'] 0m21.4s DUMP: Package: garlic Source: garlic (1.6-3) Version: 1.6-3+b1 Installed-Size: 833 Maintainer: Debichem Team Architecture: amd64 Depends: libc6 (>= 2.14), libx11-6 Suggests: garlic-doc, openbabel Description-en: visualization program for biomolecules Garlic is written for the investigation of membrane proteins. It may be used to visualize other proteins, as well as some geometric objects. This version of garlic recognizes PDB format version 2.1. Garlic may also be used to analyze protein sequences. . It only depends on the X libraries, no other libraries are needed. . Features include: - The slab position and thickness are visible in a small window. - Atomic bonds as well as atoms are treated as independent drawable objects. - The atomic and bond colors depend on position. Five mapping modes are available (as for slab). - Capable to display stereo image. - Capable to display other geometric objects, like membrane. - Atomic information is available for atom covered by the mouse pointer. No click required, just move the mouse pointer over the structure! - Capable to load more than one structure. - Capable to draw Ramachandran plot, helical wheel, Venn diagram, averaged hydrophobicity and hydrophobic moment plot. - The command prompt is available at the bottom of the main window. It is able to display one error message and one command string. Description-md5: 9a8e5d3dc375d53b824110c22a526364 Homepage: http://www.zucic.org/garlic/ Tag: field::biology, field::chemistry, interface::commandline, interface::graphical, interface::x11, role::program, scope::utility, uitoolkit::xlib, use::viewing, x11::application Section: science Priority: optional Filename: pool/main/g/garlic/garlic_1.6-3+b1_amd64.deb Size: 223492 MD5sum: 0a756fdf49b41385c4a3d612c48f4de1 SHA256: 2ed14441d2af2cb988cc5fc3b4864fbae36b603cce29b3ad3e3435ac42ae591d 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'show', '--no-all-versions', 'garlic'] 0m21.4s INFO: apt-cache knows about the following packages: garlic 0m21.4s INFO: Running scripts pre_install 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_exceptions'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_exceptions'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_extras'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_extras'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy'] 0m21.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy', 'garlic'] 0m21.7s DUMP: garlic: Installed: 1.6-3+b1 Candidate: 1.6-3+b1 Version table: *** 1.6-3+b1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy', 'garlic'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-y', 'install', 'garlic'] 0m22.2s DUMP: Reading package lists... Building dependency tree... Reading state information... garlic is already the newest version (1.6-3+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-y', 'install', 'garlic'] 0m22.2s INFO: Running scripts post_install 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_install_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_install_exceptions'] 0m22.2s INFO: Running scripts post_distupgrade 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m22.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m22.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m23.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m23.2s INFO: Running scripts pre_install 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_database-server'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_database-server'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_exceptions'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_extras'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_extras'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy'] 0m23.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy', 'garlic'] 0m23.3s DUMP: garlic: Installed: 1.6-3+b1 Candidate: 1.6-3+b1 Version table: *** 1.6-3+b1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-cache', 'policy', 'garlic'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-y', 'install', 'garlic=1.6-3+b1'] 0m23.8s DUMP: Reading package lists... Building dependency tree... Reading state information... garlic is already the newest version (1.6-3+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', '-y', 'install', 'garlic=1.6-3+b1'] 0m23.8s INFO: Running scripts post_install 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_install_exceptions'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_install_exceptions'] 0m23.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m24.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m24.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', '-ac', '--ignore-obsolete'] 0m25.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', '-ac', '--ignore-obsolete'] 0m25.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.7s DUMP: 0.15.1 0m25.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.7s INFO: Running adequate version 0.15.1 now. 0m25.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'garlic'] 0m25.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'garlic'] 0m25.9s INFO: Running scripts pre_remove 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/pre_remove_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2 install ok installed base-files base-files 11 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.34-0.1 install ok installed coreutils coreutils 8.30-3+b1 install ok installed dash dash 0.5.10.2-6 install ok installed debconf debconf 1.5.73 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.3 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.3-4 install ok installed fdisk fdisk 2.34-0.1 install ok installed findutils findutils 4.6.0+git+20190510-2 install ok installed garlic garlic 1.6-3+b1 install ok installed gcc-9-base:amd64 gcc-9-base 9.1.0-10 install ok installed gpgv gpgv 2.2.17-3 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.5-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.5-2 install ok installed libblkid1:amd64 libblkid1 2.34-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.45.3-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.45.3-4 install ok installed libfdisk1:amd64 libfdisk1 2.34-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:9.1.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.9-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.36-7 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.34-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20190713-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.32-5+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12+b1 install ok installed libseccomp2:amd64 libseccomp2 2.4.1-2 install ok installed libselinux1:amd64 libselinux1 2.9-2 install ok installed libsemanage-common libsemanage-common 2.9-3 install ok installed libsemanage1:amd64 libsemanage1 2.9-3 install ok installed libsepol1:amd64 libsepol1 2.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.34-0.1 install ok installed libss2:amd64 libss2 1.45.3-4 install ok installed libstdc++6:amd64 libstdc++6 9.1.0-10 install ok installed libsystemd0:amd64 libsystemd0 241-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.14-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20190713-2 install ok installed libudev1:amd64 libudev1 241-7 install ok installed libunistring2:amd64 libunistring2 0.9.10-2 install ok installed libuuid1:amd64 libuuid1 2.34-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1 install ok installed libx11-data libx11-data 2:1.6.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.7-2 install ok installed logsave logsave 1.45.3-4 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.34-0.1 install ok installed ncurses-base ncurses-base 6.1+20190713-2 install ok installed ncurses-bin ncurses-bin 6.1+20190713-2 install ok installed passwd passwd 1:4.7-2 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.95-4 install ok installed tar tar 1.30+dfsg-6+b1 install ok installed tzdata tzdata 2019b-1 install ok installed util-linux util-linux 2.34-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+b1 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'remove', 'libx11-data', 'libxdmcp6:amd64', 'libx11-6:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libbsd0:amd64', 'garlic'] 0m28.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: garlic libbsd0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 0 upgraded, 0 newly installed, 7 to remove and 0 not upgraded. After this operation, 4749 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6837 files and directories currently installed.) Removing garlic (1.6-3+b1) ... Removing libx11-6:amd64 (2:1.6.7-1) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2) ... Removing libx11-data (2:1.6.7-1) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.28-10) ... 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'remove', 'libx11-data', 'libxdmcp6:amd64', 'libx11-6:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libbsd0:amd64', 'garlic'] 0m28.0s INFO: Running scripts post_remove 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_remove_exceptions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_remove_exceptions'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--purge', 'libx11-data', 'libxdmcp6:amd64', 'libx11-6:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libbsd0:amd64'] 0m28.1s DUMP: dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--purge', 'libx11-data', 'libxdmcp6:amd64', 'libx11-6:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libbsd0:amd64'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--purge', 'garlic'] 0m28.1s DUMP: (Reading database ... 6484 files and directories currently installed.) Purging configuration files for garlic (1.6-3+b1) ... 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--purge', 'garlic'] 0m28.1s INFO: Running scripts post_purge 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_purge_exceptions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_purge_exceptions'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--purge', '--pending'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--purge', '--pending'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--remove', '--pending'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg', '--remove', '--pending'] 0m28.1s INFO: Running scripts post_test 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_test_exceptions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'tmp/scripts/post_test_exceptions'] 0m28.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m28.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg-divert', '--list'] 0m28.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'dpkg-divert', '--list'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'clean'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBTPf5V', 'apt-get', 'clean'] 0m28.6s DEBUG: Recording chroot state 0m30.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/shm'] 0m30.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/shm'] 0m30.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/console'] 0m30.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/console'] 0m30.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/ptmx'] 0m30.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/ptmx'] 0m30.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/pts'] 0m30.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/dev/pts'] 0m30.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/proc'] 0m30.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpBTPf5V/proc'] 0m30.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m30.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpBTPf5V'] 0m30.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpBTPf5V 0m30.6s INFO: PASS: Upgrading between Debian distributions. 0m30.6s INFO: PASS: All tests. 0m30.6s INFO: piuparts run ends. ret=0 End: 2019-08-07 16:45:38 UTC