Start: 2022-12-29 22:09:40 GMT [testing] Package: gasic-examples Source: gasic Version: 0.0.r19-7 Installed-Size: 7144 Maintainer: Debian Med Packaging Team Architecture: all Enhances: gasic Description: genome abundance similarity correction (example data) Homepage: http://sourceforge.net/projects/gasic/ Description-md5: 076b77b0ef161469461cc2951788038d Section: science Priority: optional Filename: pool/main/g/gasic/gasic-examples_0.0.r19-7_all.deb Size: 7299112 MD5sum: 642b0c3cabd0f82853d94af6d3ae5193 SHA256: 80822f65a1336aed048beed2934b430c1a7109191188cb92cf4e9d33e3132dab [sid] Package: gasic-examples Source: gasic Version: 0.0.r19-8 Installed-Size: 7143 Maintainer: Debian Med Packaging Team Architecture: all Enhances: gasic Description: genome abundance similarity correction (example data) Multi-Arch: foreign Homepage: http://sourceforge.net/projects/gasic/ Description-md5: 076b77b0ef161469461cc2951788038d Section: science Priority: optional Filename: pool/main/g/gasic/gasic-examples_0.0.r19-8_all.deb Size: 7298744 MD5sum: e430b5434bc9148c522c8e96c65e0584 SHA256: 0aa190c025c9c69e4897c7cfa52f97c2d2daf917efe8439fae5fa4c21f1eb397 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt gasic-examples=0.0.r19-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt gasic-examples=0.0.r19-8 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmptlnw4540 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmptlnw4540 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptlnw4540', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m3.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptlnw4540', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m3.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptlnw4540/proc'] 0m3.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptlnw4540/proc'] 0m3.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/pts'] 0m3.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/pts'] 0m3.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/ptmx'] 0m3.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/ptmx'] 0m3.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/console'] 0m3.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/console'] 0m3.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/shm'] 0m3.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/shm'] 0m3.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m3.2s DEBUG: Created policy-rc.d and chmodded it. 0m3.2s DEBUG: Created resolv.conf. 0m3.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmptlnw4540/tmp/scripts/ 0m3.2s INFO: Running scripts post_chroot_unpack 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'update'] 0m5.9s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8810 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5957 kB] Fetched 14.9 MB in 2s (7922 kB/s) Reading package lists... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'update'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s DUMP: 252e85554ad76acd507f6fcd639ce0d0 - 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s INFO: Running scripts post_setup 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_forbid_home'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.13 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-10 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-10 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-6 install ok installed perl-base perl-base 5.36.0-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m8.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m8.3s INFO: Running scripts is_testable 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s INFO: Running scripts pre_test 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_test_root_password'] 0m8.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_test_root_password'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'show', '--no-all-versions', 'gasic-examples'] 0m8.7s DUMP: Package: gasic-examples Source: gasic Version: 0.0.r19-7 Installed-Size: 7144 Maintainer: Debian Med Packaging Team Architecture: all Enhances: gasic Description-en: genome abundance similarity correction (example data) One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. . This package includes some examples that can be used for testing gasic. Description-md5: 076b77b0ef161469461cc2951788038d Homepage: http://sourceforge.net/projects/gasic/ Section: science Priority: optional Filename: pool/main/g/gasic/gasic-examples_0.0.r19-7_all.deb Size: 7299112 MD5sum: 642b0c3cabd0f82853d94af6d3ae5193 SHA256: 80822f65a1336aed048beed2934b430c1a7109191188cb92cf4e9d33e3132dab 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'show', '--no-all-versions', 'gasic-examples'] 0m8.7s INFO: apt-cache knows about the following packages: gasic-examples 0m8.7s INFO: Running scripts pre_install 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy'] 0m8.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy', 'gasic-examples'] 0m8.9s DUMP: gasic-examples: Installed: (none) Candidate: 0.0.r19-7 Version table: 0.0.r19-7 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy', 'gasic-examples'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-y', 'install', 'gasic-examples'] 0m10.9s DUMP: Reading package lists... Building dependency tree... The following NEW packages will be installed: gasic-examples 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 7299 kB of archives. After this operation, 7315 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 gasic-examples all 0.0.r19-7 [7299 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7299 kB in 1s (7349 kB/s) Selecting previously unselected package gasic-examples. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../gasic-examples_0.0.r19-7_all.deb ... Unpacking gasic-examples (0.0.r19-7) ... Setting up gasic-examples (0.0.r19-7) ... 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-y', 'install', 'gasic-examples'] 0m10.9s INFO: Running scripts post_install 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_install_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_install_exceptions'] 0m10.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m11.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m11.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmptlnw4540 to sid 0m11.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m11.4s INFO: Running scripts pre_distupgrade 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'update'] 0m16.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9384 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6948 kB] Fetched 16.5 MB in 4s (4600 kB/s) Reading package lists... 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'update'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-yf', 'dist-upgrade'] 0m19.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash gasic-examples gcc-12-base hostname libc-bin libc6 libgcc-s1 libp11-kit0 libstdc++6 libtinfo6 libzstd1 ncurses-base ncurses-bin tar 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 15.3 MB of archives. After this operation, 81.9 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2-2+b2 [1490 kB] Get:2 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu1 [10.5 kB] Get:3 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3+20221224-2 [421 kB] Get:4 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:5 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-11 [37.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-11 [49.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-11 [614 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.36-7 [2753 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.36-7 [605 kB] Get:10 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3+20221224-2 [260 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3+20221224-2 [330 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg2-3 [284 kB] Get:14 http://deb.debian.org/debian sid/main amd64 gasic-examples all 0.0.r19-8 [7299 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.3 MB in 0s (36.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8621 files and directories currently installed.) Preparing to unpack .../bash_5.2-2+b2_amd64.deb ... Unpacking bash (5.2-2+b2) over (5.2-2+b1) ... Setting up bash (5.2-2+b2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8621 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.1-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.1-2) over (0.24.1-1) ... Setting up libp11-kit0:amd64 (0.24.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8621 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.3+20221224-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3+20221224-2) over (6.3+20220423-2) ... Setting up libtinfo6:amd64 (6.3+20221224-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8621 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.2+dfsg2-3_amd64.deb ... Unpacking libzstd1:amd64 (1.5.2+dfsg2-3) over (1.5.2+dfsg-1) ... Setting up libzstd1:amd64 (1.5.2+dfsg2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8621 files and directories currently installed.) Preparing to unpack .../gasic-examples_0.0.r19-8_all.deb ... Unpacking gasic-examples (0.0.r19-8) over (0.0.r19-7) ... Setting up gasic-examples (0.0.r19-8) ... Processing triggers for libc-bin (2.36-7) ... Processing triggers for debianutils (5.7-0.4) ... 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-yf', 'dist-upgrade'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.7s DUMP: 6614ac91eba66a9e72fee99d3cdc32c2 - 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'show', '--no-all-versions', 'gasic-examples'] 0m20.0s DUMP: Package: gasic-examples Source: gasic Version: 0.0.r19-8 Installed-Size: 7143 Maintainer: Debian Med Packaging Team Architecture: all Enhances: gasic Description-en: genome abundance similarity correction (example data) One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. . This package includes some examples that can be used for testing gasic. Description-md5: 076b77b0ef161469461cc2951788038d Multi-Arch: foreign Homepage: http://sourceforge.net/projects/gasic/ Section: science Priority: optional Filename: pool/main/g/gasic/gasic-examples_0.0.r19-8_all.deb Size: 7298744 MD5sum: e430b5434bc9148c522c8e96c65e0584 SHA256: 0aa190c025c9c69e4897c7cfa52f97c2d2daf917efe8439fae5fa4c21f1eb397 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'show', '--no-all-versions', 'gasic-examples'] 0m20.0s INFO: apt-cache knows about the following packages: gasic-examples 0m20.0s INFO: Running scripts pre_install 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_database-server'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_database-server'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_extras'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_extras'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy'] 0m20.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy', 'gasic-examples'] 0m20.2s DUMP: gasic-examples: Installed: 0.0.r19-8 Candidate: 0.0.r19-8 Version table: *** 0.0.r19-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy', 'gasic-examples'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-y', 'install', 'gasic-examples'] 0m20.7s DUMP: Reading package lists... Building dependency tree... Reading state information... gasic-examples is already the newest version (0.0.r19-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-y', 'install', 'gasic-examples'] 0m20.7s INFO: Running scripts post_install 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_install_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_install_exceptions'] 0m20.7s INFO: Running scripts post_distupgrade 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_exceptions'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_distupgrade_zz_backports'] 0m20.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m21.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m21.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m21.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m21.3s INFO: Running scripts pre_install 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_database-server'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_extras'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_extras'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy'] 0m21.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy', 'gasic-examples'] 0m21.5s DUMP: gasic-examples: Installed: 0.0.r19-8 Candidate: 0.0.r19-8 Version table: *** 0.0.r19-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-cache', 'policy', 'gasic-examples'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-y', 'install', 'gasic-examples=0.0.r19-8'] 0m22.0s DUMP: Reading package lists... Building dependency tree... Reading state information... gasic-examples is already the newest version (0.0.r19-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', '-y', 'install', 'gasic-examples=0.0.r19-8'] 0m22.0s INFO: Running scripts post_install 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_install_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_install_exceptions'] 0m22.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m22.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m22.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptlnw4540', '-ac', '--ignore-obsolete'] 0m24.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptlnw4540', '-ac', '--ignore-obsolete'] 0m24.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.7s DUMP: 0.15.6 0m24.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.7s INFO: Running adequate version 0.15.6 now. 0m24.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'gasic-examples'] 0m25.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'gasic-examples'] 0m25.1s INFO: Running scripts pre_remove 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_exceptions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/pre_remove_exceptions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.2s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.13 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gasic-examples gasic-examples 0.0.r19-8 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-11 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-7 install ok installed libc6:amd64 libc6 2.36-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-11 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-11 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20221224-2 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg2-3 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20221224-2 install ok installed ncurses-bin ncurses-bin 6.3+20221224-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-6 install ok installed perl-base perl-base 5.36.0-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'remove', 'gasic-examples'] 0m27.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gasic-examples 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 7314 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8621 files and directories currently installed.) Removing gasic-examples (0.0.r19-8) ... 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'remove', 'gasic-examples'] 0m27.2s INFO: Running scripts post_remove 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_remove_exceptions'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_remove_exceptions'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg', '--purge', 'gasic-examples'] 0m27.2s DUMP: dpkg: warning: ignoring request to remove gasic-examples which isn't installed 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg', '--purge', 'gasic-examples'] 0m27.2s INFO: Running scripts post_purge 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_purge_exceptions'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_purge_exceptions'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg', '--purge', '--pending'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg', '--purge', '--pending'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg', '--remove', '--pending'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg', '--remove', '--pending'] 0m27.2s INFO: Running scripts post_test 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_test_exceptions'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'tmp/scripts/post_test_exceptions'] 0m27.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m27.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg-divert', '--list'] 0m27.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'dpkg-divert', '--list'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'clean'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptlnw4540', 'apt-get', 'clean'] 0m27.7s DEBUG: Recording chroot state 0m28.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/shm'] 0m29.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/shm'] 0m29.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/console'] 0m29.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/console'] 0m29.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/ptmx'] 0m29.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/ptmx'] 0m29.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/pts'] 0m29.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/dev/pts'] 0m29.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/proc'] 0m29.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptlnw4540/proc'] 0m29.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m29.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptlnw4540'] 0m29.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmptlnw4540 0m29.3s INFO: PASS: Upgrading between Debian distributions. 0m29.3s INFO: PASS: All tests. 0m29.3s INFO: piuparts run ends. ret=0 End: 2022-12-29 22:10:10 GMT