Start: 2022-12-29 22:38:38 GMT [testing] Package: gasic Version: 0.0.r19-7 Installed-Size: 81 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-biopython, python3-pysam, python3-matplotlib, bowtie, bowtie2, bwa, seqan-apps Suggests: gasic-examples Description: genome abundance similarity correction Homepage: http://sourceforge.net/projects/gasic/ Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-7_all.deb Size: 21020 MD5sum: 935b2d0078fe48347416b4d013fe5a92 SHA256: 88e740e847cdfbaa4bf8cd4ada784b5510c815c8839c650d6173a8c1a1567c79 [sid] Package: gasic Version: 0.0.r19-8 Installed-Size: 80 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-biopython, python3-pysam, python3-matplotlib, bowtie, bowtie2, bwa, seqan-apps Suggests: gasic-examples Description: genome abundance similarity correction Homepage: http://sourceforge.net/projects/gasic/ Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-8_all.deb Size: 20644 MD5sum: d0b3781f6202360b7374c87656d0680b SHA256: 22c8ca3d072ba0b75eaa3130492b341f3ed7df9f75475788213089939527491f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt gasic=0.0.r19-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt gasic=0.0.r19-8 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpqtmewtvr 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpqtmewtvr 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m4.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m4.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/proc'] 0m4.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/proc'] 0m4.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/pts'] 0m4.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/pts'] 0m4.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/ptmx'] 0m4.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/ptmx'] 0m4.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/console'] 0m4.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/console'] 0m4.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/shm'] 0m5.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/shm'] 0m5.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m5.0s DEBUG: Created policy-rc.d and chmodded it. 0m5.0s DEBUG: Created resolv.conf. 0m5.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpqtmewtvr/tmp/scripts/ 0m5.0s INFO: Running scripts post_chroot_unpack 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'update'] 0m8.0s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [164 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8810 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5957 kB] Fetched 14.9 MB in 2s (6933 kB/s) Reading package lists... 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'update'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-yf', 'dist-upgrade'] 0m8.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-yf', 'dist-upgrade'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.9s DUMP: 252e85554ad76acd507f6fcd639ce0d0 - 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.9s INFO: Running scripts post_setup 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_dummy_users'] 0m10.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_dummy_users'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_forbid_home'] 0m10.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_forbid_home'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_minimize'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_minimize'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_zz_backports'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_setup_zz_backports'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.1s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b1 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.13 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-10 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-6 install ok installed libc6:amd64 libc6 2.36-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-10 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-10 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-6 install ok installed perl-base perl-base 5.36.0-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-6 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022f-1 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m10.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 0m11.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 0m11.2s INFO: Running scripts is_testable 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/is_testable_uninstallable'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/is_testable_uninstallable'] 0m11.2s INFO: Running scripts pre_test 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_test_exceptions'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_test_exceptions'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_test_root_password'] 0m11.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_test_root_password'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m11.5s DUMP: Package: gasic Version: 0.0.r19-7 Installed-Size: 81 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-biopython, python3-pysam, python3-matplotlib, bowtie, bowtie2, bwa, seqan-apps Suggests: gasic-examples Description-en: genome abundance similarity correction One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Homepage: http://sourceforge.net/projects/gasic/ Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-7_all.deb Size: 21020 MD5sum: 935b2d0078fe48347416b4d013fe5a92 SHA256: 88e740e847cdfbaa4bf8cd4ada784b5510c815c8839c650d6173a8c1a1567c79 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 0m11.5s INFO: apt-cache knows about the following packages: gasic 0m11.5s INFO: Running scripts pre_install 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_database-server'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_database-server'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_exceptions'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_exceptions'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_extras'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_extras'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy'] 0m11.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy', 'gasic'] 0m11.7s DUMP: gasic: Installed: (none) Candidate: 0.0.r19-7 Version table: 0.0.r19-7 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy', 'gasic'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-y', 'install', 'gasic'] 2m18.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt bowtie bowtie2 bwa cpp cpp-12 fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-pyparsing python3-pysam python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sensible-utils seqan-apps sgml-base tk8.6-blt2.5 ucf unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: binutils-doc blt-demo bowtie-examples bowtie2-examples samtools cpp-doc gcc-12-locales cpp-12-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gasic-examples gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc low-memory-monitor krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils libstdc++-12-doc tcl8.6 tk8.6 libxsimd-doc python3-doc python3-venv python-attr-doc clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-pytest python-pil-doc python3-setuptools python-ply-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc readline-doc cwltool | cwl-runner sgml-base-doc debhelper Recommended packages: manpages manpages-dev libc-devtools ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules bzip2 file xz-utils python-biopython-doc ncbi-blast+ python3-bs4 python3-html5lib python3-olefile isympy-common The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt bowtie bowtie2 bwa cpp cpp-12 fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gasic gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-pyparsing python3-pysam python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sensible-utils seqan-apps sgml-base tk8.6-blt2.5 ucf unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 221 MB of archives. After this operation, 1118 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.7-1 [2008 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-minimal amd64 3.10.9-1 [784 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.10-minimal amd64 3.10.9-1 [1951 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.10.6-3+b1 [25.9 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-1 [32.2 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-1 [78.6 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:14 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-1 [331 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [134 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.2 [68.5 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.2 [165 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.0-2 [838 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-stdlib amd64 3.10.9-1 [1684 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 python3.10 amd64 3.10.9-1 [509 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.10.6-3+b1 [8876 B] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.10.6-3+b1 [25.5 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.1-1 [812 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.1-1 [2063 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.39.50.20221224-1 [2345 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.39.50.20221224-1 [570 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.39.50.20221224-1 [153 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.39.50.20221224-1 [89.9 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.39.50.20221224-1 [811 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.39.50.20221224-1 [2222 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.39.50.20221224-1 [64.4 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-1 [1035 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.1 [573 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-6 [6374 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.13.1-4.5 [281 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.5 [351 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-1 [117 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.3-3 [292 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.3-3 [759 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-1 [780 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 bowtie amd64 1.3.1-1+b1 [1627 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 bowtie2 amd64 2.4.5-1 [1383 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 bwa amd64 0.7.17-7 [212 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.2.1-2 [44.6 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-10 [9770 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-1 [20.0 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.6.1-1 [206 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-10 [41.7 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-10 [116 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-10 [26.1 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-10 [9328 B] Get:77 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-10 [2194 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-10 [969 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-10 [2197 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-10 [883 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-10 [145 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-10 [2437 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-10 [19.3 MB] Get:84 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-1 [5192 B] Get:85 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-6 [43.1 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.0.12-1 [1695 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-1 [118 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-6 [1897 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-10 [2047 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-10 [10.7 MB] Get:94 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-1 [1636 B] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 65.5.0-1 [278 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.1-1 [1713 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.1-1 [567 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-10 [793 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.23.5-2 [5706 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0-18.1 [9509 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:109 http://deb.debian.org/debian bookworm/main amd64 libpython3.10 amd64 3.10.9-1 [1753 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-dev amd64 3.10.9-1 [4124 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.10.6-3+b1 [9152 B] Get:114 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.1-1 [1987 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.1-1 [4736 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.10.6-3+b1 [1080 B] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.10.8-1 [139 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.10.6-3+b1 [1068 B] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3.10-dev amd64 3.10.9-1 [508 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-2 [130 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.10.6-3+b1 [26.0 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.1-1 [615 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.10.6-3+b1 [1080 B] Get:127 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:129 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-11 [28.6 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.8.1-14+b1 [17.2 MB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.11-1+b1 [79.6 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.11-1+b1 [40.6 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.10.8-1 [106 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.2.0-1.1+b1 [72.6 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1+b1 [169 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.13.1-1+b1 [153 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1 [189 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.2-1 [1394 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 5.2.0-2+b1 [1886 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4 [11.0 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b2 [280 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-6 [302 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.2-2+b2 [96.3 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.2-2+b2 [106 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.2.0-1.1+b1 [468 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.11-1 [566 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-3 [1602 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-2+b1 [183 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.51.0-1 [71.5 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.87.0-1 [369 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.20.0+ds-1 [1678 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.5.2-4 [2725 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-1 [78.2 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:176 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b5 [281 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7-1 [32.1 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.1-1+b2 [1728 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b1 [25.4 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 python3-unicodedata2 amd64 14.0.0+ds2-1+b1 [301 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.37.4-1+b1 [1096 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.3.2-1+b3 [56.9 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 21.3-1.1 [34.2 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.5.2-4 [7410 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 seqan-apps amd64 2.4.0+dfsg-15 [12.4 MB] Get:197 http://deb.debian.org/debian bookworm/main amd64 gasic all 0.0.r19-7 [21.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 221 MB in 5s (40.7 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8605 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.7-1) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.9-1_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.9-1_amd64.deb ... Unpacking python3.10-minimal (3.10.9-1) ... Setting up libssl3:amd64 (3.0.7-1) ... Setting up libpython3.10-minimal:amd64 (3.10.9-1) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.10-minimal (3.10.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8922 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.10.6-3+b1_amd64.deb ... Unpacking python3-minimal (3.10.6-3+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../06-libkrb5support0_1.20.1-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.20.1-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.20.1-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.20.1-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../12-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-1.2_all.deb ... Unpacking readline-common (8.2-1.2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../15-libreadline8_8.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../16-libsqlite3-0_3.40.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.0-2) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../17-libpython3.10-stdlib_3.10.9-1_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.9-1) ... Selecting previously unselected package python3.10. Preparing to unpack .../18-python3.10_3.10.9-1_amd64.deb ... Unpacking python3.10 (3.10.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../19-libpython3-stdlib_3.10.6-3+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-3+b1) ... Setting up python3-minimal (3.10.6-3+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9447 files and directories currently installed.) Preparing to unpack .../000-python3_3.10.6-3+b1_amd64.deb ... Unpacking python3 (3.10.6-3+b1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../001-libpython3.11-minimal_3.11.1-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.1-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../002-python3.11-minimal_3.11.1-1_amd64.deb ... Unpacking python3.11-minimal (3.11.1-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package ucf. Preparing to unpack .../005-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../006-binutils-common_2.39.50.20221224-1_amd64.deb ... Unpacking binutils-common:amd64 (2.39.50.20221224-1) ... Selecting previously unselected package libbinutils:amd64. Preparing to unpack .../007-libbinutils_2.39.50.20221224-1_amd64.deb ... Unpacking libbinutils:amd64 (2.39.50.20221224-1) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../008-libctf-nobfd0_2.39.50.20221224-1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.39.50.20221224-1) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../009-libctf0_2.39.50.20221224-1_amd64.deb ... Unpacking libctf0:amd64 (2.39.50.20221224-1) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../010-libgprofng0_2.39.50.20221224-1_amd64.deb ... Unpacking libgprofng0:amd64 (2.39.50.20221224-1) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../011-libjansson4_2.14-2_amd64.deb ... Unpacking libjansson4:amd64 (2.14-2) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../012-binutils-x86-64-linux-gnu_2.39.50.20221224-1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.39.50.20221224-1) ... Selecting previously unselected package binutils. Preparing to unpack .../013-binutils_2.39.50.20221224-1_amd64.deb ... Unpacking binutils (2.39.50.20221224-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../014-libtcl8.6_8.6.13+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.13+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../015-libbrotli1_1.0.9-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b5) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../016-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../017-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../018-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... 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Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../161-libxslt1.1_1.1.35-1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../162-python3-lxml_4.9.1-1+b2_amd64.deb ... Unpacking python3-lxml:amd64 (4.9.1-1+b2) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../163-python3-lz4_4.0.2+dfsg-1+b1_amd64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b1) ... Selecting previously unselected package python3-unicodedata2. Preparing to unpack .../164-python3-unicodedata2_14.0.0+ds2-1+b1_amd64.deb ... Unpacking python3-unicodedata2 (14.0.0+ds2-1+b1) ... Selecting previously unselected package unicode-data. Preparing to unpack .../165-unicode-data_15.0.0-1_all.deb ... Unpacking unicode-data (15.0.0-1) ... Selecting previously unselected package python3-fonttools. 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Selecting previously unselected package gasic. Preparing to unpack .../172-gasic_0.0.r19-7_all.deb ... Unpacking gasic (0.0.r19-7) ... Setting up libhtscodecs2:amd64 (1.3.0-4) ... Setting up media-types (8.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.13.1-1+b1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libglib2.0-0:amd64 (2.74.2-1) ... No schema files found: doing nothing. Setting up bwa (0.7.17-7) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.6.1-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libsqlite3-0:amd64 (3.40.0-2) ... Setting up binutils-common:amd64 (2.39.50.20221224-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.51.0-1) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.0.12-1) ... Setting up libctf-nobfd0:amd64 (2.39.50.20221224-1) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up libgomp1:amd64 (12.2.0-10) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Setting up libx11-data (2:1.8.3-3) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up xfonts-encodings (1:1.0.4-2.1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-10) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up seqan-apps (2.4.0+dfsg-15) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libmpc3:amd64 (1.2.1-2) ... Setting up libatomic1:amd64 (12.2.0-10) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-10) ... Setting up libwebp7:amd64 (1.2.2-2+b2) ... Setting up libubsan1:amd64 (12.2.0-10) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.33-1) ... Setting up libasan8:amd64 (12.2.0-10) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libtiff5:amd64 (4.4.0-6) ... Setting up libpython3.11-minimal:amd64 (3.11.1-1) ... Setting up libtsan2:amd64 (12.2.0-10) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.39.50.20221224-1) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-6) ... Setting up python-matplotlib-data (3.5.2-4) ... Setting up libwebpmux3:amd64 (1.2.2-2+b2) ... Setting up libbsd0:amd64 (0.11.7-1) ... Setting up mailcap (3.70+nmu1) ... Setting up readline-common (8.2-1.2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up libcc1-0:amd64 (12.2.0-10) ... Setting up liblsan0:amd64 (12.2.0-10) ... Setting up libitm1:amd64 (12.2.0-10) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Setting up libctf0:amd64 (2.39.50.20221224-1) ... Setting up python3.11-minimal (3.11.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-10) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up mime-support (3.66) ... Setting up libwebpdemux2:amd64 (1.2.2-2+b2) ... Setting up libreadline8:amd64 (8.2-1.2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Setting up libgprofng0:amd64 (2.39.50.20221224-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libgcc-12-dev:amd64 (12.2.0-10) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (5.3.0-2) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-1) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.3-3) ... Setting up libharfbuzz0b:amd64 (5.2.0-2+b1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Setting up binutils-x86-64-linux-gnu (2.39.50.20221224-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up fontconfig-config (2.13.1-4.5) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.87.0-1) ... Setting up binutils (2.39.50.20221224-1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-10) ... Setting up libraqm0:amd64 (0.7.0-4) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.5) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.1-1) ... Setting up libtk8.6:amd64 (8.6.13-1) ... Setting up fonts-urw-base35 (20200910-6) ... Setting up gcc (4:12.2.0-1) ... Setting up libpython3.10-stdlib:amd64 (3.10.9-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-6) ... Setting up libpython3-stdlib:amd64 (3.10.6-3+b1) ... Setting up python3.11 (3.11.1-1) ... Setting up libpython3.10:amd64 (3.10.9-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3.10 (3.10.9-1) ... Setting up libpython3.11:amd64 (3.11.1-1) ... Setting up libstdc++-12-dev:amd64 (12.2.0-10) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3 (3.10.6-3+b1) ... Setting up python3-tz (2022.7-1) ... Setting up bowtie2 (2.4.5-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.2.0-1.1+b1) ... Setting up python3-decorator (5.1.1-3) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-brotli (1.0.9-2+b5) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Setting up python3-kiwisolver (1.3.2-1+b3) ... Setting up python3-reportlab (3.6.11-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lxml:amd64 (4.9.1-1+b2) ... Setting up python3-dateutil (2.8.2-1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-appdirs (1.4.4-3) ... Setting up g++-12 (12.2.0-10) ... Setting up python3-pkg-resources (65.5.0-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-18.1) ... Setting up python3-pysam (0.20.0+ds-1) ... Setting up python3-renderpm:amd64 (3.6.11-1+b1) ... Setting up bowtie (1.3.1-1+b1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b1) ... Setting up python3-unicodedata2 (14.0.0+ds2-1+b1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.10.6-3+b1) ... Setting up python3-tk:amd64 (3.10.8-1) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-packaging (21.3-1.1) ... Setting up python3-pil.imagetk:amd64 (9.2.0-1.1+b1) ... Setting up libpython3.11-dev:amd64 (3.11.1-1) ... Setting up libpython3.10-dev:amd64 (3.10.9-1) ... Setting up python3-numpy (1:1.23.5-2) ... Setting up python3.10-dev (3.10.9-1) ... Setting up g++ (4:12.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.10.6-3+b1) ... Setting up python3.11-dev (3.11.1-1) ... Setting up libpython3-all-dev:amd64 (3.10.6-3+b1) ... Setting up python3-dev (3.10.6-3+b1) ... Setting up python3-all-dev (3.10.6-3+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.8.1-14+b1) ... Setting up python3-fonttools (4.37.4-1+b1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-matplotlib (3.5.2-4) ... Processing triggers for libc-bin (2.36-6) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-3) ... Setting up gasic (0.0.r19-7) ... 2m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-y', 'install', 'gasic'] 2m18.0s INFO: Running scripts post_install 2m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_install_exceptions'] 2m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_install_exceptions'] 2m18.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 2m20.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 2m20.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpqtmewtvr to sid 2m20.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 2m20.1s INFO: Running scripts pre_distupgrade 2m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_exceptions'] 2m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_exceptions'] 2m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'update'] 2m24.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [161 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9384 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6948 kB] Fetched 16.5 MB in 3s (4981 kB/s) Reading package lists... 2m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'update'] 2m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-yf', 'dist-upgrade'] 2m56.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: python3-contourpy The following packages will be upgraded: bash bowtie2 cpp-12 g++-12 gasic gcc-12 gcc-12-base hostname libasan8 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libgcc-12-dev libgcc-s1 libgfortran5 libglib2.0-0 libgomp1 libharfbuzz0b libitm1 liblsan0 libmpc3 libmpfr6 libncursesw6 libp11-kit0 libquadmath0 libstdc++-12-dev libstdc++6 libtinfo6 libtsan2 libubsan1 libzstd1 ncurses-base ncurses-bin python-matplotlib-data python3-biopython python3-lxml python3-matplotlib python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-pysam python3-scipy tar 47 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 5429 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2-2+b2 [1490 kB] Get:2 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu1 [10.5 kB] Get:3 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3+20221224-2 [421 kB] Get:4 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.36-7 [1899 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.36-7 [43.6 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 12.2.0-11 [883 kB] Get:8 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-11 [37.3 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-11 [49.9 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 12.2.0-11 [116 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 12.2.0-11 [26.1 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 12.2.0-11 [9316 B] Get:13 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 12.2.0-11 [2193 kB] Get:14 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 12.2.0-11 [969 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 12.2.0-11 [145 kB] Get:16 http://deb.debian.org/debian sid/main amd64 cpp-12 amd64 12.2.0-11 [9766 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 12.2.0-11 [41.8 kB] Get:18 http://deb.debian.org/debian sid/main amd64 gcc-12 amd64 12.2.0-11 [19.3 MB] Get:19 http://deb.debian.org/debian sid/main amd64 g++-12 amd64 12.2.0-11 [10.7 MB] Get:20 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.2.0-11 [2047 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.2.0-11 [2436 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 12.2.0-11 [2197 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 12.2.0-11 [793 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-11 [614 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.1.1-1 [665 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg2-3 [284 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.36-7 [2753 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.36-7 [605 kB] Get:30 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3+20221224-2 [260 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.3+20221224-2 [134 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3+20221224-2 [330 kB] Get:34 http://deb.debian.org/debian sid/main amd64 bowtie2 amd64 2.5.0-2 [1408 kB] Get:35 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.8.1-18 [17.2 MB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.80+dfsg-4 [1602 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.20.0+ds-2 [2403 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.2-3 [2736 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 9.3.0-1 [73.4 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 9.3.0-1 [473 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.6-2 [207 kB] Get:42 http://deb.debian.org/debian sid/main amd64 python3-packaging all 22.0-2 [32.2 kB] Get:43 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.2-3 [7675 kB] Get:44 http://deb.debian.org/debian sid/main amd64 gasic all 0.0.r19-8 [20.6 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.74.4-1 [1396 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 6.0.0-1 [1938 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 4.9.2-1 [1830 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 65.5.0-1.1 [278 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 3s (31.9 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41684 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.1-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.1-2) over (0.24.1-1) ... Setting up libp11-kit0:amd64 (0.24.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41684 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.3+20221224-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20221224-2) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.3+20221224-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3+20221224-2) over (6.3+20220423-2) ... Setting up libtinfo6:amd64 (6.3+20221224-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41684 files and directories currently installed.) Preparing to unpack .../00-bowtie2_2.5.0-2_amd64.deb ... Unpacking bowtie2 (2.5.0-2) over (2.4.5-1) ... Preparing to unpack .../01-python3-scipy_1.8.1-18_amd64.deb ... Unpacking python3-scipy (1.8.1-18) over (1.8.1-14+b1) ... Preparing to unpack .../02-python3-biopython_1.80+dfsg-4_amd64.deb ... Unpacking python3-biopython (1.80+dfsg-4) over (1.80+dfsg-3) ... Preparing to unpack .../03-python3-pysam_0.20.0+ds-2_amd64.deb ... Unpacking python3-pysam (0.20.0+ds-2) over (0.20.0+ds-1) ... Preparing to unpack .../04-python-matplotlib-data_3.6.2-3_all.deb ... Unpacking python-matplotlib-data (3.6.2-3) over (3.5.2-4) ... Preparing to unpack .../05-python3-pil.imagetk_9.3.0-1_amd64.deb ... Unpacking python3-pil.imagetk:amd64 (9.3.0-1) over (9.2.0-1.1+b1) ... Preparing to unpack .../06-python3-pil_9.3.0-1_amd64.deb ... Unpacking python3-pil:amd64 (9.3.0-1) over (9.2.0-1.1+b1) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../07-python3-contourpy_1.0.6-2_amd64.deb ... Unpacking python3-contourpy (1.0.6-2) ... Preparing to unpack .../08-python3-packaging_22.0-2_all.deb ... Unpacking python3-packaging (22.0-2) over (21.3-1.1) ... Preparing to unpack .../09-python3-matplotlib_3.6.2-3_amd64.deb ... Unpacking python3-matplotlib (3.6.2-3) over (3.5.2-4) ... Preparing to unpack .../10-gasic_0.0.r19-8_all.deb ... Unpacking gasic (0.0.r19-8) over (0.0.r19-7) ... Preparing to unpack .../11-libglib2.0-0_2.74.4-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.4-1) over (2.74.2-1) ... Preparing to unpack .../12-libharfbuzz0b_6.0.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (6.0.0-1) over (5.2.0-2+b1) ... Preparing to unpack .../13-python3-lxml_4.9.2-1_amd64.deb ... Unpacking python3-lxml:amd64 (4.9.2-1) over (4.9.1-1+b2) ... Preparing to unpack .../14-python3-pkg-resources_65.5.0-1.1_all.deb ... Unpacking python3-pkg-resources (65.5.0-1.1) over (65.5.0-1) ... Setting up python3-pkg-resources (65.5.0-1.1) ... Setting up python3-pysam (0.20.0+ds-2) ... Setting up libglib2.0-0:amd64 (2.74.4-1) ... No schema files found: doing nothing. Setting up libgomp1:amd64 (12.2.0-11) ... Setting up bowtie2 (2.5.0-2) ... Setting up python3-pil:amd64 (9.3.0-1) ... Setting up python3-packaging (22.0-2) ... Setting up python3-pil.imagetk:amd64 (9.3.0-1) ... Setting up libmpfr6:amd64 (4.1.1-1) ... Setting up libquadmath0:amd64 (12.2.0-11) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-11) ... Setting up libncursesw6:amd64 (6.3+20221224-2) ... Setting up libgfortran5:amd64 (12.2.0-11) ... Setting up libubsan1:amd64 (12.2.0-11) ... Setting up python3-lxml:amd64 (4.9.2-1) ... Setting up libasan8:amd64 (12.2.0-11) ... Setting up libharfbuzz0b:amd64 (6.0.0-1) ... Setting up python3-contourpy (1.0.6-2) ... Setting up libtsan2:amd64 (12.2.0-11) ... Setting up python3-biopython (1.80+dfsg-4) ... Setting up libc-dev-bin (2.36-7) ... Setting up python-matplotlib-data (3.6.2-3) ... Installing new version of config file /etc/matplotlibrc ... Setting up libcc1-0:amd64 (12.2.0-11) ... Setting up liblsan0:amd64 (12.2.0-11) ... Setting up libitm1:amd64 (12.2.0-11) ... Setting up python3-matplotlib (3.6.2-3) ... Setting up cpp-12 (12.2.0-11) ... Setting up python3-scipy (1.8.1-18) ... Setting up gasic (0.0.r19-8) ... Setting up libgcc-12-dev:amd64 (12.2.0-11) ... Setting up libc6-dev:amd64 (2.36-7) ... Setting up libstdc++-12-dev:amd64 (12.2.0-11) ... Setting up gcc-12 (12.2.0-11) ... Setting up g++-12 (12.2.0-11) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for mailcap (3.70+nmu1) ... Processing triggers for libc-bin (2.36-7) ... 2m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-yf', 'dist-upgrade'] 2m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m56.7s DUMP: 6614ac91eba66a9e72fee99d3cdc32c2 - 2m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 2m56.9s DUMP: Package: gasic Version: 0.0.r19-8 Installed-Size: 80 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-scipy, python3-numpy, python3-biopython, python3-pysam, python3-matplotlib, bowtie, bowtie2, bwa, seqan-apps Suggests: gasic-examples Description-en: genome abundance similarity correction One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c Homepage: http://sourceforge.net/projects/gasic/ Section: science Priority: optional Filename: pool/main/g/gasic/gasic_0.0.r19-8_all.deb Size: 20644 MD5sum: d0b3781f6202360b7374c87656d0680b SHA256: 22c8ca3d072ba0b75eaa3130492b341f3ed7df9f75475788213089939527491f 2m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'show', '--no-all-versions', 'gasic'] 2m56.9s INFO: apt-cache knows about the following packages: gasic 2m56.9s INFO: Running scripts pre_install 2m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_database-server'] 2m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_database-server'] 2m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_exceptions'] 2m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_exceptions'] 2m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_extras'] 2m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_extras'] 2m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture'] 2m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture'] 2m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy'] 2m57.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy'] 2m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy', 'gasic'] 2m57.0s DUMP: gasic: Installed: 0.0.r19-8 Candidate: 0.0.r19-8 Version table: *** 0.0.r19-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy', 'gasic'] 2m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-y', 'install', 'gasic'] 2m57.6s DUMP: Reading package lists... Building dependency tree... Reading state information... gasic is already the newest version (0.0.r19-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-y', 'install', 'gasic'] 2m57.6s INFO: Running scripts post_install 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_install_exceptions'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_install_exceptions'] 2m57.6s INFO: Running scripts post_distupgrade 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_exceptions'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_exceptions'] 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_zz_backports'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_distupgrade_zz_backports'] 2m57.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 2m59.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 2m59.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 3m1.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 3m1.0s INFO: Running scripts pre_install 3m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_database-server'] 3m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_database-server'] 3m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_exceptions'] 3m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_exceptions'] 3m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_extras'] 3m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_extras'] 3m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture'] 3m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture'] 3m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy'] 3m1.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy'] 3m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy', 'gasic'] 3m1.2s DUMP: gasic: Installed: 0.0.r19-8 Candidate: 0.0.r19-8 Version table: *** 0.0.r19-8 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-cache', 'policy', 'gasic'] 3m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-y', 'install', 'gasic=0.0.r19-8'] 3m1.8s DUMP: Reading package lists... Building dependency tree... Reading state information... gasic is already the newest version (0.0.r19-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', '-y', 'install', 'gasic=0.0.r19-8'] 3m1.8s INFO: Running scripts post_install 3m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_install_exceptions'] 3m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_install_exceptions'] 3m1.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 3m3.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 3m5.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', '-ac', '--ignore-obsolete'] 3m10.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', '-ac', '--ignore-obsolete'] 3m10.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m10.5s DUMP: 0.15.6 3m10.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m10.5s INFO: Running adequate version 0.15.6 now. 3m10.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'gasic'] 3m10.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'gasic'] 3m10.6s INFO: Running scripts pre_remove 3m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_exceptions'] 3m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/pre_remove_exceptions'] 3m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m16.3s DUMP: install ok installed apt apt 2.5.4 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2-2+b2 install ok installed binutils binutils 2.39.50.20221224-1 install ok installed binutils-common:amd64 binutils-common 2.39.50.20221224-1 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.39.50.20221224-1 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bowtie bowtie 1.3.1-1+b1 install ok installed bowtie2 bowtie2 2.5.0-2 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed bwa bwa 0.7.17-7 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-1 install ok installed cpp-12 cpp-12 12.2.0-11 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.80 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.13 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1+b1 install ok installed findutils findutils 4.9.0-3 install ok installed fontconfig-config fontconfig-config 2.13.1-4.5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-lyx fonts-lyx 2.3.6.1-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-6 install ok installed g++ g++ 4:12.2.0-1 install ok installed g++-12 g++-12 12.2.0-11 install ok installed gasic gasic 0.0.r19-8 install ok installed gcc gcc 4:12.2.0-1 install ok installed gcc-12 gcc-12 12.2.0-11 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-11 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.4 install ok installed libasan8:amd64 libasan8 12.2.0-11 install ok installed libatomic1:amd64 libatomic1 12.2.0-11 install ok installed libattr1:amd64 libattr1 1:2.5.1-3 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b2 install ok installed libbinutils:amd64 libbinutils 2.39.50.20221224-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-18.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b5 install ok installed libbsd0:amd64 libbsd0 0.11.7-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-7 install ok installed libc-dev-bin libc-dev-bin 2.36-7 install ok installed libc6:amd64 libc6 2.36-7 install ok installed libc6-dev:amd64 libc6-dev 2.36-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b2 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-11 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.39.50.20221224-1 install ok installed libctf0:amd64 libctf0 2.39.50.20221224-1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.87.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.265 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.5 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-11 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-11 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-11 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.4-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgomp1:amd64 libgomp1 12.2.0-11 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.39.50.20221224-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhts3:amd64 libhts3 1.16+ds-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.3.0-4 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libisl23:amd64 libisl23 0.25-1 install ok installed libitm1:amd64 libitm1 12.2.0-11 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1+b1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-2 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-11 install ok installed liblcms2-2:amd64 liblcms2-2 2.13.1-1+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblsan0:amd64 liblsan0 12.2.0-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.0-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.1.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.3+20221224-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.51.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-5 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-5 install ok installed libpam-runtime libpam-runtime 1.5.2-5 install ok installed libpam0g:amd64 libpam0g 1.5.2-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-6 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.10.6-3+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.10.6-3+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-3+b1 install ok installed libpython3.10:amd64 libpython3.10 3.10.9-1 install ok installed libpython3.10-dev:amd64 libpython3.10-dev 3.10.9-1 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.9-1 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.9-1 install ok installed libpython3.11:amd64 libpython3.11 3.11.1-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.1-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.1-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.1-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-5 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-11 install ok installed libraqm0:amd64 libraqm0 0.7.0-4 install ok installed libreadline8:amd64 libreadline8 8.2-1.2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b2 install ok installed libselinux1:amd64 libselinux1 3.4-1+b4 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b4 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.0-2 install ok installed libss2:amd64 libss2 1.46.6~rc1-1+b1 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.7-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-11 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-11 install ok installed libsystemd0:amd64 libsystemd0 252.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-1 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff5:amd64 libtiff5 4.4.0-6 install ok installed libtinfo6:amd64 libtinfo6 6.3+20221224-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-1 install ok installed libtsan2:amd64 libtsan2 12.2.0-11 install ok installed libubsan1:amd64 libubsan1 12.2.0-11 install ok installed libudev1:amd64 libudev1 252.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b2 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.2-2+b2 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.2-2+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.3-3 install ok installed libx11-data libx11-data 2:1.8.3-3 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.1+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg2-3 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.0.12-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1+b1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.3+20221224-2 install ok installed ncurses-bin ncurses-bin 6.3+20221224-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-6 install ok installed perl-base perl-base 5.36.0-6 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-6 install ok installed python-matplotlib-data python-matplotlib-data 3.6.2-3 install ok installed python3 python3 3.10.6-3+b1 install ok installed python3-all python3-all 3.10.6-3+b1 install ok installed python3-all-dev python3-all-dev 3.10.6-3+b1 install ok installed python3-appdirs python3-appdirs 1.4.4-3 install ok installed python3-attr python3-attr 22.2.0-1 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.80+dfsg-4 install ok installed python3-brotli python3-brotli 1.0.9-2+b5 install ok installed python3-contourpy python3-contourpy 1.0.6-2 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-1 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-dev python3-dev 3.10.6-3+b1 install ok installed python3-distutils python3-distutils 3.10.8-1 install ok installed python3-fonttools python3-fonttools 4.37.4-1+b1 install ok installed python3-fs python3-fs 2.4.16-2 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-kiwisolver python3-kiwisolver 1.3.2-1+b3 install ok installed python3-lib2to3 python3-lib2to3 3.10.8-1 install ok installed python3-lxml:amd64 python3-lxml 4.9.2-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b1 install ok installed python3-matplotlib python3-matplotlib 3.6.2-3 install ok installed python3-minimal python3-minimal 3.10.6-3+b1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-numpy python3-numpy 1:1.23.5-2 install ok installed python3-packaging python3-packaging 22.0-2 install ok installed python3-pil:amd64 python3-pil 9.3.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 9.3.0-1 install ok installed python3-pkg-resources python3-pkg-resources 65.5.0-1.1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-pyparsing python3-pyparsing 3.0.9-1 install ok installed python3-pysam python3-pysam 0.20.0+ds-2 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.11-1+b1 install ok installed python3-reportlab python3-reportlab 3.6.11-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.11-1+b1 install ok installed python3-scipy python3-scipy 1.8.1-18 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-sympy python3-sympy 1.11.1-1 install ok installed python3-tk:amd64 python3-tk 3.10.8-1 install ok installed python3-tz python3-tz 2022.7-1 install ok installed python3-ufolib2 python3-ufolib2 0.13.1+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 14.0.0+ds2-1+b1 install ok installed python3.10 python3.10 3.10.9-1 install ok installed python3.10-dev python3.10-dev 3.10.9-1 install ok installed python3.10-minimal python3.10-minimal 3.10.9-1 install ok installed python3.11 python3.11 3.11.1-1 install ok installed python3.11-dev python3.11-dev 3.11.1-1 install ok installed python3.11-minimal python3.11-minimal 3.11.1-1 install ok installed readline-common readline-common 8.2-1.2 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed seqan-apps seqan-apps 2.4.0+dfsg-15 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2022f-1 install ok installed ucf ucf 3.0043 install ok installed unicode-data unicode-data 15.0.0-1 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.1 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 3m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bowtie', 'bowtie2', 'bwa', 'cpp', 'cpp-12', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'seqan-apps', 'sgml-base', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'gasic'] 4m7.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu blt bowtie bowtie2 bwa cpp cpp-12 fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 g++ g++-12 gasic gcc gcc-12 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-biopython python3-brotli python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-pyparsing python3-pysam python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sensible-utils seqan-apps sgml-base tk8.6-blt2.5 ucf unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 0 newly installed, 198 to remove and 0 not upgraded. After this operation, 1124 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41748 files and directories currently installed.) Removing gasic (0.0.r19-8) ... Removing g++ (4:12.2.0-1) ... Removing gcc (4:12.2.0-1) ... Removing python3-biopython (1.80+dfsg-4) ... Removing python3-reportlab (3.6.11-1) ... Removing python3-matplotlib (3.6.2-3) ... Removing python3-pil.imagetk:amd64 (9.3.0-1) ... Removing python3-pil:amd64 (9.3.0-1) ... Removing python3-tk:amd64 (3.10.8-1) ... Removing blt (2.5.3+dfsg-4.1) ... Removing bowtie (1.3.1-1+b1) ... Removing bowtie2 (2.5.0-2) ... Removing bwa (0.7.17-7) ... Removing cpp (4:12.2.0-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.13-1) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libfontconfig1:amd64 (2.13.1-4.5) ... Removing fontconfig-config (2.13.1-4.5) ... Removing python-matplotlib-data (3.6.2-3) ... Removing fonts-dejavu-core (2.37-2) ... Removing fonts-lyx (2.3.6.1-1) ... Removing python3-renderpm:amd64 (3.6.11-1+b1) ... Removing fonts-urw-base35 (20200910-6) ... Removing python3-contourpy (1.0.6-2) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing xfonts-utils (1:7.7+6) ... Removing libraqm0:amd64 (0.7.0-4) ... Removing python3-pysam (0.20.0+ds-2) ... Removing libhts3:amd64 (1.16+ds-3) ... Removing libcurl3-gnutls:amd64 (7.87.0-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libtiff5:amd64 (4.4.0-6) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing libharfbuzz0b:amd64 (6.0.0-1) ... Removing libglib2.0-0:amd64 (2.74.4-1) ... Removing seqan-apps (2.4.0+dfsg-15) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libhtscodecs2:amd64 (1.3.0-4) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1+b1) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing liblcms2-2:amd64 (2.13.1-1+b1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libnghttp2-14:amd64 (1.51.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing python3-reportlab-accel:amd64 (3.6.11-1+b1) ... Removing libqhull-r8.0:amd64 (2020.2-5) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-1) ... Removing libwebpmux3:amd64 (1.2.2-2+b2) ... Removing libwebpdemux2:amd64 (1.2.2-2+b2) ... Removing libwebp7:amd64 (1.2.2-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-1) ... Removing python3-kiwisolver (1.3.2-1+b3) ... Removing python3-packaging (22.0-2) ... Removing python3-pyparsing (3.0.9-1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.1) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libbrotli1:amd64 (1.0.9-2+b5) ... Removing libx11-6:amd64 (2:1.8.3-3) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-1) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libx11-data (2:1.8.3-3) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-fonttools (4.37.4-1+b1) ... Removing python3-scipy (1.8.1-18) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++-12 (12.2.0-11) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-18.1) ... Removing libstdc++-12-dev:amd64 (12.2.0-11) ... Removing python3-numpy (1:1.23.5-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Removing python3-all-dev (3.10.6-3+b1) ... Removing python3.11-dev (3.11.1-1) ... Removing libpython3-all-dev:amd64 (3.10.6-3+b1) ... Removing libpython3.11-dev:amd64 (3.11.1-1) ... Removing python3-dev (3.10.6-3+b1) ... Removing python3.10-dev (3.10.9-1) ... Removing python3-all (3.10.6-3+b1) ... Removing python3.11 (3.11.1-1) ... Removing python3.11-minimal (3.11.1-1) ... Removing libpython3.11:amd64 (3.11.1-1) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-11) ... Removing libpython3.11-stdlib:amd64 (3.11.1-1) ... Removing python3-lxml:amd64 (4.9.2-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Removing libicu72:amd64 (72.1-3) ... Removing libjs-sphinxdoc (5.3.0-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-2) ... Removing libpython3-dev:amd64 (3.10.6-3+b1) ... Removing python3-unicodedata2 (14.0.0+ds2-1+b1) ... Removing python3-distutils (3.10.8-1) ... Removing python3-sympy (1.11.1-1) ... Removing libpython3.11-minimal:amd64 (3.11.1-1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing python3-fs (2.4.16-2) ... Removing python3-appdirs (1.4.4-3) ... Removing python3-beniget (0.4.1-3) ... Removing python3-brotli (1.0.9-2+b5) ... Removing python3-decorator (5.1.1-3) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.10.8-1) ... Removing python3-lz4 (4.0.2+dfsg-1+b1) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (65.5.0-1.1) ... Removing python3-ply (3.11-5) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2022.7-1) ... Removing unicode-data (15.0.0-1) ... Removing python3-ufolib2 (0.13.1+dfsg1-1) ... Removing gcc-12 (12.2.0-11) ... Removing binutils (2.39.50.20221224-1) ... Removing binutils-x86-64-linux-gnu (2.39.50.20221224-1) ... Removing libgprofng0:amd64 (2.39.50.20221224-1) ... Removing libctf0:amd64 (2.39.50.20221224-1) ... Removing libbinutils:amd64 (2.39.50.20221224-1) ... Removing binutils-common:amd64 (2.39.50.20221224-1) ... Removing cpp-12 (12.2.0-11) ... Removing libgcc-12-dev:amd64 (12.2.0-11) ... Removing libasan8:amd64 (12.2.0-11) ... Removing libatomic1:amd64 (12.2.0-11) ... Removing libpython3.10-dev:amd64 (3.10.9-1) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-7) ... Removing libc-dev-bin (2.36-7) ... Removing libcc1-0:amd64 (12.2.0-11) ... Removing libcrypt-dev:amd64 (1:4.4.33-1) ... Removing libctf-nobfd0:amd64 (2.39.50.20221224-1) ... Removing libgomp1:amd64 (12.2.0-11) ... Removing libpython3.10:amd64 (3.10.9-1) ... Removing libisl23:amd64 (0.25-1) ... Removing libitm1:amd64 (12.2.0-11) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-11) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.1.1-1) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libquadmath0:amd64 (12.2.0-11) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libtsan2:amd64 (12.2.0-11) ... Removing libubsan1:amd64 (12.2.0-11) ... Removing linux-libc-dev:amd64 (6.0.12-1) ... Removing python3-attr (22.2.0-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing python3 (3.10.6-3+b1) ... Removing libpython3-stdlib:amd64 (3.10.6-3+b1) ... Removing python3.10 (3.10.9-1) ... Removing python3-minimal (3.10.6-3+b1) ... Removing python3.10-minimal (3.10.9-1) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3.10-stdlib:amd64 (3.10.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20221224-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.10-minimal:amd64 (3.10.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.2) ... Removing libsqlite3-0:amd64 (3.40.0-2) ... Removing media-types (8.0.0) ... Removing readline-common (8.2-1.2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libssl3:amd64 (3.0.7-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-7) ... 4m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bowtie', 'bowtie2', 'bwa', 'cpp', 'cpp-12', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'seqan-apps', 'sgml-base', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'gasic'] 4m7.0s INFO: Running scripts post_remove 4m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_remove_exceptions'] 4m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_remove_exceptions'] 4m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bowtie', 'bowtie2', 'bwa', 'cpp', 'cpp-12', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'seqan-apps', 'sgml-base', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 4m8.0s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 8665 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.39.50.20221224-1) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed Purging configuration files for fontconfig-config (2.13.1-4.5) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-6) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.4-1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.10 which isn't installed dpkg: warning: ignoring request to remove libpython3.10-dev which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.9-1) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.1-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (8.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for python-matplotlib-data (3.6.2-3) ... Purging configuration files for python3 (3.10.6-3+b1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed Purging configuration files for python3-sympy (1.11.1-1) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed dpkg: warning: ignoring request to remove python3.10-dev which isn't installed Purging configuration files for python3.10-minimal (3.10.9-1) ... dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.1-1) ... Purging configuration files for readline-common (8.2-1.2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove seqan-apps which isn't installed Purging configuration files for sgml-base (1.31) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed Purging configuration files for ucf (3.0043) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 4m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bowtie', 'bowtie2', 'bwa', 'cpp', 'cpp-12', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'seqan-apps', 'sgml-base', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 4m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--purge', 'gasic'] 4m8.0s DUMP: dpkg: warning: ignoring request to remove gasic which isn't installed 4m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--purge', 'gasic'] 4m8.0s INFO: Running scripts post_purge 4m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_purge_exceptions'] 4m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_purge_exceptions'] 4m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--purge', '--pending'] 4m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--purge', '--pending'] 4m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--remove', '--pending'] 4m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg', '--remove', '--pending'] 4m8.0s INFO: Running scripts post_test 4m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_test_exceptions'] 4m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'tmp/scripts/post_test_exceptions'] 4m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 4m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 4m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg-divert', '--list'] 4m8.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 4m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'dpkg-divert', '--list'] 4m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'clean'] 4m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr', 'apt-get', 'clean'] 4m8.6s DEBUG: Recording chroot state 4m9.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/shm'] 4m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/shm'] 4m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/console'] 4m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/console'] 4m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/ptmx'] 4m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/ptmx'] 4m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/pts'] 4m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/dev/pts'] 4m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/proc'] 4m9.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr/proc'] 4m9.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 4m9.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqtmewtvr'] 4m9.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpqtmewtvr 4m9.9s INFO: PASS: Upgrading between Debian distributions. 4m9.9s INFO: PASS: All tests. 4m9.9s INFO: piuparts run ends. ret=0 End: 2022-12-29 22:42:48 GMT