Start: 2023-02-04 04:22:22 GMT [testing] Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description: DICOM converter with support for structure heuristics Homepage: https://github.com/nipy/heudiconv Description-md5: 1c97e589188a732262069fcb46088fb7 Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab [sid] Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description: DICOM converter with support for structure heuristics Homepage: https://github.com/nipy/heudiconv Description-md5: 1c97e589188a732262069fcb46088fb7 Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt heudiconv=0.11.6-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt heudiconv=0.11.6-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzy7lrrsx 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzy7lrrsx 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzy7lrrsx/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'update'] 0m5.6s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [171 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8963 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6046 kB] Fetched 15.2 MB in 3s (5787 kB/s) Reading package lists... 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'update'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-yf', 'dist-upgrade'] 0m6.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libaudit1 libcap-ng0 libseccomp2 libselinux1 libsemanage2 libsystemd0 libudev1 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 710 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.7-1.1+b3 [46.4 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+b3 [46.6 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libselinux1 amd64 3.4-1+b5 [74.0 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.5-2 [329 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.5-2 [107 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libsemanage2 amd64 3.4-1+b5 [89.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 710 kB in 0s (7082 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8043 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1+b3_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.3-1+b3) over (0.8.3-1+b2) ... Setting up libcap-ng0:amd64 (0.8.3-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8043 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.7-1.1+b3_amd64.deb ... Unpacking libaudit1:amd64 (1:3.0.7-1.1+b3) over (1:3.0.7-1.1+b2) ... Setting up libaudit1:amd64 (1:3.0.7-1.1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8043 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1+b3_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.4-1+b3) over (2.5.4-1+b2) ... Setting up libseccomp2:amd64 (2.5.4-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8043 files and directories currently installed.) Preparing to unpack .../libselinux1_3.4-1+b5_amd64.deb ... Unpacking libselinux1:amd64 (3.4-1+b5) over (3.4-1+b4) ... Setting up libselinux1:amd64 (3.4-1+b5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8043 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.5-2_amd64.deb ... Unpacking libsystemd0:amd64 (252.5-2) over (252.4-2) ... Setting up libsystemd0:amd64 (252.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8043 files and directories currently installed.) Preparing to unpack .../libudev1_252.5-2_amd64.deb ... Unpacking libudev1:amd64 (252.5-2) over (252.4-2) ... Setting up libudev1:amd64 (252.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8043 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1+b5_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1+b5) over (3.4-1+b4) ... Setting up libsemanage2:amd64 (3.4-1+b5) ... Processing triggers for libc-bin (2.36-8) ... 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-yf', 'dist-upgrade'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.2s DUMP: 87a188786b5c36d376262d413d1b67fc - 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.2s INFO: Running scripts post_setup 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DUMP: install ok installed apt apt 2.5.5 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-3 install ok installed dpkg dpkg 1.21.19 install ok installed e2fsprogs e2fsprogs 1.46.6~rc1-1.1 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.5 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b3 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-8 install ok installed libc6:amd64 libc6 2.36-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.6~rc1-1.1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.266 install ok installed libext2fs2:amd64 libext2fs2 1.46.6~rc1-1.1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.0 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6 install ok installed libpam-runtime libpam-runtime 1.5.2-6 install ok installed libpam0g:amd64 libpam0g 1.5.2-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b5 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libss2:amd64 libss2 1.46.6~rc1-1.1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.5-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.4-2 install ok installed libudev1:amd64 libudev1 252.5-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg2-3 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6~rc1-1.1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.4-2 install ok installed ncurses-bin ncurses-bin 6.4-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-7 install ok installed perl-base perl-base 5.36.0-7 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022g-2 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 0m8.7s INFO: Running scripts is_testable 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/is_testable_uninstallable'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/is_testable_uninstallable'] 0m8.7s INFO: Running scripts pre_test 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_test_exceptions'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_test_exceptions'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_test_root_password'] 0m8.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_test_root_password'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 0m9.0s DUMP: Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description-en: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Description-md5: 1c97e589188a732262069fcb46088fb7 Homepage: https://github.com/nipy/heudiconv Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 0m9.0s INFO: apt-cache knows about the following packages: heudiconv 0m9.0s INFO: Running scripts pre_install 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy'] 0m9.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy', 'heudiconv'] 0m9.2s DUMP: heudiconv: Installed: (none) Candidate: 0.11.6-1 Version table: 0.11.6-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy', 'heudiconv'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-y', 'install', 'heudiconv'] 0m58.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 dcm2niix g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu72 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libturbojpeg0 libubsan1 libxml2 libxsimd-dev libxslt1.1 libyaml-cpp0.7 linux-libc-dev media-types openssl python3 python3-all python3-all-dev python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-dev python3-dicom python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-future python3-gast python3-h5py python3-h5py-serial python3-idna python3-isodate python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-ply python3-prov python3-psutil python3-pydicom python3-pyparsing python3-pythran python3-rdflib python3-requests python3-scipy python3-simplejson python3-six python3-tqdm python3-traits python3-tz python3-urllib3 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-12-locales cpp-12-doc g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc krb5-doc krb5-user libstdc++-12-doc libxsimd-doc python3-doc python3-tk python3-venv python-dipy-doc python-funcsigs-doc python-future-doc python-h5py-doc python-lxml-doc python-nibabel-doc python3-mock fsl-core afni python3-nipy slicer matlab-spm8 python3-pyxnat mne-python elastix ants python3-pytest-xdist python3-bids gfortran python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python-ply-doc python-prov-doc python3-pydot python-psutil-doc python3-matplotlib python3-gdcm python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-brotli python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: pigz python3-pytest python3-datalad manpages manpages-dev libc-devtools javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-matplotlib python3-vtk9 python3-tables python3-sklearn python3-bs4 python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-yaml python3-fuse ipython3 graphviz python3-xvfbwrapper mayavi2 python3-mock python3-pydotplus python3-cfflib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-jinja2 python3-numba python3-pil python3-sparqlwrapper The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 dcm2niix g++ g++-12 gcc gcc-12 heudiconv libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu72 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libturbojpeg0 libubsan1 libxml2 libxsimd-dev libxslt1.1 libyaml-cpp0.7 linux-libc-dev media-types openssl python3 python3-all python3-all-dev python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-dev python3-dicom python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-future python3-gast python3-h5py python3-h5py-serial python3-idna python3-isodate python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-ply python3-prov python3-psutil python3-pydicom python3-pyparsing python3-pythran python3-rdflib python3-requests python3-scipy python3-simplejson python3-six python3-tqdm python3-traits python3-tz python3-urllib3 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB of archives. After this operation, 904 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.7-2 [2007 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.1-2 [812 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.1-2 [2065 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.1-2 [25.7 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-2 [134 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-1 [32.2 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-1 [78.6 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:12 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-1 [331 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [134 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-1 [838 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.1-2 [1712 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.1-2 [567 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.1-2 [8704 B] Get:23 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.1-2 [25.4 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.7-2 [1399 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20211016 [156 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:39 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libturbojpeg0 amd64 1:2.1.2-1+b1 [211 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libyaml-cpp0.7 amd64 0.7.0+dfsg-8+b1 [110 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 dcm2niix amd64 1.0.20220720-1 [246 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:47 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:54 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:55 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-8 [43.8 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.7-1 [1716 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-8 [1897 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:64 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:65 http://deb.debian.org/debian bookworm/main amd64 python3-pydicom all 2.3.1-1 [1239 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 python3-dicom all 2.3.1-1 [3572 B] Get:67 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 65.6.3-1 [278 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.1-2+b1 [5207 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0-18.1 [9509 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:80 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.1-2 [1987 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.1-2 [4740 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.1-2 [8940 B] Get:85 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.1-2 [1068 B] Get:86 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.10.8-1 [77.3 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.10.8-1 [139 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.1-2 [1064 B] Get:89 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.1-2 [615 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-3 [130 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.1-2 [26.2 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.1-2 [1064 B] Get:95 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-11 [28.6 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.8.1-22 [17.2 MB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-nibabel all 5.0.0-2 [2669 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-dcmstack all 0.9-1 [75.8 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-filelock all 3.9.0-1 [9460 B] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-click all 8.1.3-2 [92.2 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-1 [78.2 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-ci-info all 0.2.0-2 [6852 B] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 python3-etelemetry all 0.3.0-3 [6980 B] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 python3-isodate all 0.6.1-1 [25.3 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 python3-rdflib all 6.1.1-1 [385 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 python3-prov all 2.0.0-2 [95.6 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 python3-simplejson amd64 3.18.1-1+b1 [60.0 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 python3-traits amd64 6.3.2-1+b3 [4804 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-3 [183 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.51.0-1 [71.5 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.87.0-2 [376 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get:139 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-h5py-serial amd64 3.7.0-3+b1 [804 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3-h5py all 3.7.0-3 [9900 B] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-1 [32.1 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-1+b1 [3500 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-1 [2886 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 python3-dipy-lib amd64 1.6.0-1+b1 [1823 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 python3-dipy all 1.6.0-1 [3258 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 python3-funcsigs all 1.0.2-5 [14.0 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.4-1+b1 [189 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 python3-nipype all 1.8.5-3 [1865 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 heudiconv all 0.11.6-1 [7610 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 180 MB in 4s (40.0 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8045 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-2_amd64.deb ... Unpacking libssl3:amd64 (3.0.7-2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.1-2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.1-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.1-2_amd64.deb ... Unpacking python3.11-minimal (3.11.1-2) ... Setting up libssl3:amd64 (3.0.7-2) ... Setting up libpython3.11-minimal:amd64 (3.11.1-2) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.1-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8373 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.1-2_amd64.deb ... Unpacking python3-minimal (3.11.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../02-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../03-libncursesw6_6.4-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.20.1-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../05-libk5crypto3_1.20.1-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../06-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../07-libkrb5-3_1.20.1-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../08-libgssapi-krb5-2_1.20.1-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../09-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../10-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../11-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../13-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.40.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../15-libpython3.11-stdlib_3.11.1-2_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.1-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../16-python3.11_3.11.1-2_amd64.deb ... Unpacking python3.11 (3.11.1-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.11.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.1-2) ... Setting up python3-minimal (3.11.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8883 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.1-2_amd64.deb ... Unpacking python3 (3.11.1-2) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.7-2_amd64.deb ... Unpacking openssl (3.0.7-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../003-binutils-common_2.40-2_amd64.deb ... Unpacking binutils-common:amd64 (2.40-2) ... Selecting previously unselected package libbinutils:amd64. Preparing to unpack .../004-libbinutils_2.40-2_amd64.deb ... Unpacking libbinutils:amd64 (2.40-2) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../005-libctf-nobfd0_2.40-2_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.40-2) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../006-libctf0_2.40-2_amd64.deb ... Unpacking libctf0:amd64 (2.40-2) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../007-libgprofng0_2.40-2_amd64.deb ... Unpacking libgprofng0:amd64 (2.40-2) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../008-libjansson4_2.14-2_amd64.deb ... Unpacking libjansson4:amd64 (2.14-2) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../009-binutils-x86-64-linux-gnu_2.40-2_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.40-2) ... Selecting previously unselected package binutils. Preparing to unpack .../010-binutils_2.40-2_amd64.deb ... Unpacking binutils (2.40-2) ... Selecting previously unselected package libisl23:amd64. Preparing to unpack .../011-libisl23_0.25-1_amd64.deb ... Unpacking libisl23:amd64 (0.25-1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../012-libmpfr6_4.2.0-1_amd64.deb ... Unpacking libmpfr6:amd64 (4.2.0-1) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../013-libmpc3_1.3.1-1_amd64.deb ... Unpacking libmpc3:amd64 (1.3.1-1) ... Selecting previously unselected package cpp-12. Preparing to unpack .../014-cpp-12_12.2.0-14_amd64.deb ... Unpacking cpp-12 (12.2.0-14) ... Selecting previously unselected package cpp. Preparing to unpack .../015-cpp_4%3a12.2.0-3_amd64.deb ... Unpacking cpp (4:12.2.0-3) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../016-libopenjp2-7_2.5.0-1+b1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-1+b1) ... Selecting previously unselected package libturbojpeg0:amd64. Preparing to unpack .../017-libturbojpeg0_1%3a2.1.2-1+b1_amd64.deb ... Unpacking libturbojpeg0:amd64 (1:2.1.2-1+b1) ... Selecting previously unselected package libyaml-cpp0.7:amd64. Preparing to unpack .../018-libyaml-cpp0.7_0.7.0+dfsg-8+b1_amd64.deb ... Unpacking libyaml-cpp0.7:amd64 (0.7.0+dfsg-8+b1) ... Selecting previously unselected package dcm2niix. Preparing to unpack .../019-dcm2niix_1.0.20220720-1_amd64.deb ... Unpacking dcm2niix (1.0.20220720-1) ... Selecting previously unselected package libcc1-0:amd64. Preparing to unpack .../020-libcc1-0_12.2.0-14_amd64.deb ... Unpacking libcc1-0:amd64 (12.2.0-14) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../021-libgomp1_12.2.0-14_amd64.deb ... Unpacking libgomp1:amd64 (12.2.0-14) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../022-libitm1_12.2.0-14_amd64.deb ... Unpacking libitm1:amd64 (12.2.0-14) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../023-libatomic1_12.2.0-14_amd64.deb ... Unpacking libatomic1:amd64 (12.2.0-14) ... Selecting previously unselected package libasan8:amd64. Preparing to unpack .../024-libasan8_12.2.0-14_amd64.deb ... Unpacking libasan8:amd64 (12.2.0-14) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../025-liblsan0_12.2.0-14_amd64.deb ... Unpacking liblsan0:amd64 (12.2.0-14) ... Selecting previously unselected package libtsan2:amd64. Preparing to unpack .../026-libtsan2_12.2.0-14_amd64.deb ... Unpacking libtsan2:amd64 (12.2.0-14) ... 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Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up libyaml-cpp0.7:amd64 (0.7.0+dfsg-8+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-2) ... Setting up libk5crypto3:amd64 (1.20.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-1+b1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.36-8) ... Setting up openssl (3.0.7-2) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.3) ... Setting up dcm2niix (1.0.20220720-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-1) ... Setting up libjs-sphinxdoc (5.3.0-3) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libcurl4:amd64 (7.87.0-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up binutils (2.40-2) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.1-2) ... Setting up gcc (4:12.2.0-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-8) ... Setting up libpython3-stdlib:amd64 (3.11.1-2) ... Setting up python3.11 (3.11.1-2) ... Setting up libpython3.11:amd64 (3.11.1-2) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up python3 (3.11.1-2) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-tz (2022.7.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.1-1+b1) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-funcsigs (1.0.2-5) ... Setting up python3-idna (3.3-1) ... Setting up python3-ci-info (0.2.0-2) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-pydicom (2.3.1-1) ... Setting up python3-dateutil (2.8.2-1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-pkg-resources (65.6.3-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up python3-filelock (3.9.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-18.1) ... Setting up python3-traits (6.3.2-1+b3) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.1-2) ... Setting up python3-click (8.1.3-2) ... Setting up python3-dicom (2.3.1-1) ... Setting up python3-networkx (2.8.8-1) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3.11-dev:amd64 (3.11.1-2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.1-2+b1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-rdflib (6.1.1-1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up libpython3-dev:amd64 (3.11.1-2) ... Setting up python3.11-dev (3.11.1-2) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-1+b1) ... Setting up python3-h5py-serial (3.7.0-3+b1) ... Setting up python3-prov (2.0.0-2) ... Setting up python3-etelemetry (0.3.0-3) ... Setting up python3-dipy-lib:amd64 (1.6.0-1+b1) ... Setting up python3-pandas (1.5.3+dfsg-1) ... Setting up libpython3-all-dev:amd64 (3.11.1-2) ... Setting up python3-dev (3.11.1-2) ... Setting up python3-h5py (3.7.0-3) ... Setting up python3-all-dev (3.11.1-2) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.8.1-22) ... Setting up python3-dipy (1.6.0-1) ... Setting up python3-nibabel (5.0.0-2) ... Setting up python3-nipype (1.8.5-3) ... Setting up python3-dcmstack (0.9-1) ... Setting up heudiconv (0.11.6-1) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-y', 'install', 'heudiconv'] 0m58.8s INFO: Running scripts post_install 0m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_install_exceptions'] 0m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_install_exceptions'] 0m58.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m0.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m0.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpzy7lrrsx to sid 1m0.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m0.1s INFO: Running scripts pre_distupgrade 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_exceptions'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_exceptions'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'update'] 1m3.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [167 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9422 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6971 kB] Fetched 16.6 MB in 3s (5520 kB/s) Reading package lists... 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'update'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-yf', 'dist-upgrade'] 1m13.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: diffutils e2fsprogs libboost1.74-dev libcom-err2 libext2fs2 liblzma5 libpython3-all-dev libpython3-dev libpython3-stdlib libss2 libturbojpeg0 linux-libc-dev logsave media-types python3 python3-all python3-all-dev python3-dev python3-h5py python3-h5py-serial python3-minimal python3-pkg-resources python3-scipy tar 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 30.1 MB of archives. After this operation, 27.3 MB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.8-4 [352 kB] Get:2 http://deb.debian.org/debian sid/main amd64 tar amd64 1.34+dfsg-1.1 [836 kB] Get:3 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.46.6-1 [19.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.46.6-1 [203 kB] Get:5 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.46.6-1 [566 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.11.1-3 [1068 B] Get:7 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.11.1-3 [1064 B] Get:8 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.11.1-3 [1068 B] Get:9 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.11.1-3 [9200 B] Get:10 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.11.1-3 [26.2 kB] Get:11 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.1-3 [25.9 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.1-3 [25.9 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.1-3 [8960 B] Get:14 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.1-0.1 [205 kB] Get:15 http://deb.debian.org/debian sid/main amd64 media-types all 9.0.0 [26.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.46.6-1 [19.4 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.46.6-1 [24.2 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libturbojpeg0 amd64 1:2.1.5-2 [210 kB] Get:20 http://deb.debian.org/debian sid/main amd64 linux-libc-dev amd64 6.1.8-1 [1720 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.7.0-4 [803 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.7.0-4 [10.2 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.10.0-3 [15.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.1 MB in 0s (99.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42103 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-4_amd64.deb ... Unpacking diffutils (1:3.8-4) over (1:3.8-3) ... Setting up diffutils (1:3.8-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42103 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.1_amd64.deb ... Unpacking tar (1.34+dfsg-1.1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42103 files and directories currently installed.) Preparing to unpack .../logsave_1.46.6-1_amd64.deb ... Unpacking logsave (1.46.6-1) over (1.46.6~rc1-1.1) ... Preparing to unpack .../libext2fs2_1.46.6-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.6-1) over (1.46.6~rc1-1.1) ... Setting up libext2fs2:amd64 (1.46.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42103 files and directories currently installed.) Preparing to unpack .../0-e2fsprogs_1.46.6-1_amd64.deb ... Unpacking e2fsprogs (1.46.6-1) over (1.46.6~rc1-1.1) ... Preparing to unpack .../1-python3-all-dev_3.11.1-3_amd64.deb ... Unpacking python3-all-dev (3.11.1-3) over (3.11.1-2) ... Preparing to unpack .../2-python3-all_3.11.1-3_amd64.deb ... Unpacking python3-all (3.11.1-3) over (3.11.1-2) ... Preparing to unpack .../3-libpython3-all-dev_3.11.1-3_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.11.1-3) over (3.11.1-2) ... Preparing to unpack .../4-libpython3-dev_3.11.1-3_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.1-3) over (3.11.1-2) ... Preparing to unpack .../5-python3-dev_3.11.1-3_amd64.deb ... Unpacking python3-dev (3.11.1-3) over (3.11.1-2) ... Preparing to unpack .../6-python3-minimal_3.11.1-3_amd64.deb ... Unpacking python3-minimal (3.11.1-3) over (3.11.1-2) ... Setting up python3-minimal (3.11.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42103 files and directories currently installed.) Preparing to unpack .../python3_3.11.1-3_amd64.deb ... Unpacking python3 (3.11.1-3) over (3.11.1-2) ... Preparing to unpack .../libpython3-stdlib_3.11.1-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.1-3) over (3.11.1-2) ... Preparing to unpack .../liblzma5_5.4.1-0.1_amd64.deb ... Unpacking liblzma5:amd64 (5.4.1-0.1) over (5.4.1-0.0) ... Setting up liblzma5:amd64 (5.4.1-0.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 42104 files and directories currently installed.) Preparing to unpack .../0-media-types_9.0.0_all.deb ... Unpacking media-types (9.0.0) over (8.0.0) ... Preparing to unpack .../1-libboost1.74-dev_1.74.0+ds1-20_amd64.deb ... Unpacking libboost1.74-dev:amd64 (1.74.0+ds1-20) over (1.74.0-18.1) ... Preparing to unpack .../2-libcom-err2_1.46.6-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.6-1) over (1.46.6~rc1-1.1) ... Preparing to unpack .../3-libss2_1.46.6-1_amd64.deb ... Unpacking libss2:amd64 (1.46.6-1) over (1.46.6~rc1-1.1) ... Preparing to unpack .../4-libturbojpeg0_1%3a2.1.5-2_amd64.deb ... Unpacking libturbojpeg0:amd64 (1:2.1.5-2) over (1:2.1.2-1+b1) ... Preparing to unpack .../5-linux-libc-dev_6.1.8-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.1.8-1) over (6.1.7-1) ... Preparing to unpack .../6-python3-h5py-serial_3.7.0-4_amd64.deb ... Unpacking python3-h5py-serial (3.7.0-4) over (3.7.0-3+b1) ... Preparing to unpack .../7-python3-h5py_3.7.0-4_all.deb ... Unpacking python3-h5py (3.7.0-4) over (3.7.0-3) ... Preparing to unpack .../8-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) over (65.6.3-1) ... Preparing to unpack .../9-python3-scipy_1.10.0-3_amd64.deb ... Unpacking python3-scipy (1.10.0-3) over (1.8.1-22) ... Setting up media-types (9.0.0) ... Installing new version of config file /etc/mime.types ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libpython3-dev:amd64 (3.11.1-3) ... Setting up linux-libc-dev:amd64 (6.1.8-1) ... Setting up libcom-err2:amd64 (1.46.6-1) ... Setting up libturbojpeg0:amd64 (1:2.1.5-2) ... Setting up libpython3-all-dev:amd64 (3.11.1-3) ... Setting up libss2:amd64 (1.46.6-1) ... Setting up logsave (1.46.6-1) ... Setting up libpython3-stdlib:amd64 (3.11.1-3) ... Setting up e2fsprogs (1.46.6-1) ... Setting up python3 (3.11.1-3) ... Setting up python3-dev (3.11.1-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-scipy (1.10.0-3) ... Setting up python3-h5py-serial (3.7.0-4) ... Setting up python3-all (3.11.1-3) ... Setting up python3-h5py (3.7.0-4) ... Setting up python3-all-dev (3.11.1-3) ... Processing triggers for libc-bin (2.36-8) ... 1m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-yf', 'dist-upgrade'] 1m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m14.2s DUMP: e00504769a531417079f3d67f45659a9 - 1m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 1m14.4s DUMP: Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description-en: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Description-md5: 1c97e589188a732262069fcb46088fb7 Homepage: https://github.com/nipy/heudiconv Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 1m14.4s INFO: apt-cache knows about the following packages: heudiconv 1m14.4s INFO: Running scripts pre_install 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_database-server'] 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_database-server'] 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_exceptions'] 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_exceptions'] 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_extras'] 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_extras'] 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture'] 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture'] 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy'] 1m14.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy'] 1m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy', 'heudiconv'] 1m14.5s DUMP: heudiconv: Installed: 0.11.6-1 Candidate: 0.11.6-1 Version table: *** 0.11.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy', 'heudiconv'] 1m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-y', 'install', 'heudiconv'] 1m15.0s DUMP: Reading package lists... Building dependency tree... Reading state information... heudiconv is already the newest version (0.11.6-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-y', 'install', 'heudiconv'] 1m15.0s INFO: Running scripts post_install 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_install_exceptions'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_install_exceptions'] 1m15.0s INFO: Running scripts post_distupgrade 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_exceptions'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_exceptions'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_zz_backports'] 1m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_distupgrade_zz_backports'] 1m15.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m16.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m16.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m17.9s INFO: Running scripts pre_install 1m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_database-server'] 1m17.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_database-server'] 1m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_exceptions'] 1m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_exceptions'] 1m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_extras'] 1m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_extras'] 1m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture'] 1m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture'] 1m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy'] 1m18.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy'] 1m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy', 'heudiconv'] 1m18.1s DUMP: heudiconv: Installed: 0.11.6-1 Candidate: 0.11.6-1 Version table: *** 0.11.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-cache', 'policy', 'heudiconv'] 1m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-y', 'install', 'heudiconv=0.11.6-1'] 1m18.6s DUMP: Reading package lists... Building dependency tree... Reading state information... heudiconv is already the newest version (0.11.6-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', '-y', 'install', 'heudiconv=0.11.6-1'] 1m18.6s INFO: Running scripts post_install 1m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_install_exceptions'] 1m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_install_exceptions'] 1m18.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m20.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m22.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', '-ac', '--ignore-obsolete'] 1m27.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', '-ac', '--ignore-obsolete'] 1m27.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m27.8s DUMP: 0.15.6 1m27.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m27.8s INFO: Running adequate version 0.15.6 now. 1m27.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'heudiconv'] 1m27.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'heudiconv'] 1m27.9s INFO: Running scripts pre_remove 1m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_exceptions'] 1m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/pre_remove_exceptions'] 1m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m32.0s DUMP: install ok installed apt apt 2.5.5 install ok installed base-files base-files 12.3 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2 install ok installed binutils binutils 2.40-2 install ok installed binutils-common:amd64 binutils-common 2.40-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.40-2 install ok installed bsdutils bsdutils 1:2.38.1-4 install ok installed ca-certificates ca-certificates 20211016 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-3 install ok installed cpp-12 cpp-12 12.2.0-14 install ok installed dash dash 0.5.12-2 install ok installed dcm2niix dcm2niix 1.0.20220720-1 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.19 install ok installed e2fsprogs e2fsprogs 1.46.6-1 install ok installed findutils findutils 4.9.0-4 install ok installed g++ g++ 4:12.2.0-3 install ok installed g++-12 g++-12 12.2.0-14 install ok installed gcc gcc 4:12.2.0-3 install ok installed gcc-12 gcc-12 12.2.0-14 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed heudiconv heudiconv 0.11.6-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libaec0:amd64 libaec0 1.0.6-1+b1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.5 install ok installed libasan8:amd64 libasan8 12.2.0-14 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.7-1.1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1.1+b3 install ok installed libbinutils:amd64 libbinutils 2.40-2 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-4 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0+ds1-20 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-8 install ok installed libc-dev-bin libc-dev-bin 2.36-8 install ok installed libc6:amd64 libc6 2.36-8 install ok installed libc6-dev:amd64 libc6-dev 2.36-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-3 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-14 install ok installed libcom-err2:amd64 libcom-err2 1.46.6-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.40-2 install ok installed libctf0:amd64 libctf0 2.40-2 install ok installed libcurl4:amd64 libcurl4 7.87.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.266 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.6-1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-14 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.8-4 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.40-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.8+repack1-1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.8+repack1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libisl23:amd64 libisl23 0.25-1 install ok installed libitm1:amd64 libitm1 12.2.0-14 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-3 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-11 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-3 install ok installed liblsan0:amd64 liblsan0 12.2.0-14 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzf1:amd64 liblzf1 3.6-3 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-4 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libncursesw6:amd64 libncursesw6 6.4-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.51.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6 install ok installed libpam-runtime libpam-runtime 1.5.2-6 install ok installed libpam0g:amd64 libpam0g 1.5.2-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.1-3 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.1-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.1-3 install ok installed libpython3.11:amd64 libpython3.11 3.11.1-2 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.1-2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.1-2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.1-2 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b5 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-1 install ok installed libss2:amd64 libss2 1.46.6-1 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.7-2 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-14 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.5-2 install ok installed libsz2:amd64 libsz2 1.0.6-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.4-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtsan2:amd64 libtsan2 12.2.0-14 install ok installed libturbojpeg0:amd64 libturbojpeg0 1:2.1.5-2 install ok installed libubsan1:amd64 libubsan1 12.2.0-14 install ok installed libudev1:amd64 libudev1 252.5-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-4 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.1+b3 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-cpp0.7:amd64 libyaml-cpp0.7 0.7.0+dfsg-8+b1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg2-3 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.1.8-1 install ok installed login login 1:4.13+dfsg1-1 install ok installed logsave logsave 1.46.6-1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 9.0.0 install ok installed mount mount 2.38.1-4 install ok installed ncurses-base ncurses-base 6.4-2 install ok installed ncurses-bin ncurses-bin 6.4-2 install ok installed openssl openssl 3.0.7-2 install ok installed passwd passwd 1:4.13+dfsg1-1 install ok installed perl perl 5.36.0-7 install ok installed perl-base perl-base 5.36.0-7 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7 install ok installed python3 python3 3.11.1-3 install ok installed python3-all python3-all 3.11.1-3 install ok installed python3-all-dev python3-all-dev 3.11.1-3 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-certifi python3-certifi 2022.9.24-1 install ok installed python3-chardet python3-chardet 5.1.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.0.1-2 install ok installed python3-ci-info python3-ci-info 0.2.0-2 install ok installed python3-click python3-click 8.1.3-2 install ok installed python3-colorama python3-colorama 0.4.6-2 install ok installed python3-dateutil python3-dateutil 2.8.2-1 install ok installed python3-dcmstack python3-dcmstack 0.9-1 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-dev python3-dev 3.11.1-3 install ok installed python3-dicom python3-dicom 2.3.1-1 install ok installed python3-dipy python3-dipy 1.6.0-1 install ok installed python3-dipy-lib:amd64 python3-dipy-lib 1.6.0-1+b1 install ok installed python3-distutils python3-distutils 3.10.8-1 install ok installed python3-etelemetry python3-etelemetry 0.3.0-3 install ok installed python3-filelock python3-filelock 3.9.0-1 install ok installed python3-funcsigs python3-funcsigs 1.0.2-5 install ok installed python3-future python3-future 0.18.2-6 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-h5py python3-h5py 3.7.0-4 install ok installed python3-h5py-serial python3-h5py-serial 3.7.0-4 install ok installed python3-idna python3-idna 3.3-1 install ok installed python3-isodate python3-isodate 0.6.1-1 install ok installed python3-lib2to3 python3-lib2to3 3.10.8-1 install ok installed python3-lxml:amd64 python3-lxml 4.9.2-1+b1 install ok installed python3-minimal python3-minimal 3.11.1-3 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-nibabel python3-nibabel 5.0.0-2 install ok installed python3-nipype python3-nipype 1.8.5-3 install ok installed python3-numpy python3-numpy 1:1.24.1-2+b1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-1 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-1+b1 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-prov python3-prov 2.0.0-2 install ok installed python3-psutil python3-psutil 5.9.4-1+b1 install ok installed python3-pydicom python3-pydicom 2.3.1-1 install ok installed python3-pyparsing python3-pyparsing 3.0.9-1 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-rdflib python3-rdflib 6.1.1-1 install ok installed python3-requests python3-requests 2.28.1+dfsg-1 install ok installed python3-scipy python3-scipy 1.10.0-3 install ok installed python3-simplejson python3-simplejson 3.18.1-1+b1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tqdm python3-tqdm 4.64.1-1 install ok installed python3-traits python3-traits 6.3.2-1+b3 install ok installed python3-tz python3-tz 2022.7.1-1 install ok installed python3-urllib3 python3-urllib3 1.26.12-1 install ok installed python3.11 python3.11 3.11.1-2 install ok installed python3.11-dev python3.11-dev 3.11.1-2 install ok installed python3.11-minimal python3.11-minimal 3.11.1-2 install ok installed readline-common readline-common 8.2-1.3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-2 install ok installed tar tar 1.34+dfsg-1.1 install ok installed tzdata tzdata 2022g-2 install ok installed usr-is-merged usr-is-merged 35 install ok installed usrmerge usrmerge 35 install ok installed util-linux util-linux 2.38.1-4 install ok installed util-linux-extra util-linux-extra 2.38.1-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 1m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'dcm2niix', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libturbojpeg0:amd64', 'libubsan1:amd64', 'libxml2:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.7:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-dev', 'python3-dicom', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-pythran', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'heudiconv'] 1m38.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 dcm2niix g++ g++-12 gcc gcc-12 heudiconv libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu72 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libturbojpeg0 libubsan1 libxml2 libxsimd-dev libxslt1.1 libyaml-cpp0.7 linux-libc-dev media-types openssl python3 python3-all python3-all-dev python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-dev python3-dicom python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-future python3-gast python3-h5py python3-h5py-serial python3-idna python3-isodate python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-ply python3-prov python3-psutil python3-pydicom python3-pyparsing python3-pythran python3-rdflib python3-requests python3-scipy python3-simplejson python3-six python3-tqdm python3-traits python3-tz python3-urllib3 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 0 newly installed, 154 to remove and 0 not upgraded. After this operation, 877 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41965 files and directories currently installed.) Removing heudiconv (0.11.6-1) ... Removing python3-nipype (1.8.5-3) ... Removing python3-dcmstack (0.9-1) ... Removing python3-nibabel (5.0.0-2) ... Removing g++ (4:12.2.0-3) ... Removing gcc (4:12.2.0-3) ... Removing python3-etelemetry (0.3.0-3) ... Removing python3-requests (2.28.1+dfsg-1) ... Removing python3-certifi (2022.9.24-1) ... Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:12.2.0-3) ... Removing dcm2niix (1.0.20220720-1) ... Removing python3-dipy (1.6.0-1) ... Removing python3-h5py (3.7.0-4) ... Removing python3-h5py-serial (3.7.0-4) ... Removing libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Removing libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Removing libsz2:amd64 (1.0.6-1+b1) ... Removing libaec0:amd64 (1.0.6-1+b1) ... Removing python3-pandas (1.5.3+dfsg-1) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-1+b1) ... Removing python3-dipy-lib:amd64 (1.6.0-1+b1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libcurl4:amd64 (7.87.0-2) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing python3-tqdm (4.64.1-1) ... Removing python3-simplejson (3.18.1-1+b1) ... Removing python3-urllib3 (1.26.12-1) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing python3-prov (2.0.0-2) ... Removing python3-lxml:amd64 (4.9.2-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Removing libicu72:amd64 (72.1-3) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-3) ... Removing liblzf1:amd64 (3.6-3) ... Removing libnghttp2-14:amd64 (1.51.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-1+b1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing openssl (3.0.7-2) ... Removing libturbojpeg0:amd64 (1:2.1.5-2) ... Removing libyaml-cpp0.7:amd64 (0.7.0+dfsg-8+b1) ... Removing python3-chardet (5.1.0+dfsg-2) ... Removing python3-charset-normalizer (3.0.1-2) ... Removing python3-ci-info (0.2.0-2) ... Removing python3-click (8.1.3-2) ... Removing python3-colorama (0.4.6-2) ... Removing python3-dateutil (2.8.2-1) ... Removing python3-dicom (2.3.1-1) ... Removing python3-filelock (3.9.0-1) ... Removing python3-funcsigs (1.0.2-5) ... Removing python3-future (0.18.2-6) ... Removing python3-idna (3.3-1) ... Removing python3-rdflib (6.1.1-1) ... Removing python3-isodate (0.6.1-1) ... Removing python3-networkx (2.8.8-1) ... Removing python3-packaging (23.0-1) ... Removing python3-psutil (5.9.4-1+b1) ... Removing python3-pydicom (2.3.1-1) ... Removing python3-pyparsing (3.0.9-1) ... Removing python3-traits (6.3.2-1+b3) ... Removing python3-tz (2022.7.1-1) ... Removing python3-scipy (1.10.0-3) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++-12 (12.2.0-14) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0+ds1-20) ... Removing libstdc++-12-dev:amd64 (12.2.0-14) ... Removing python3-numpy (1:1.24.1-2+b1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Removing python3-all-dev (3.11.1-3) ... Removing python3-dev (3.11.1-3) ... Removing python3.11-dev (3.11.1-2) ... Removing libpython3-all-dev:amd64 (3.11.1-3) ... Removing libpython3-dev:amd64 (3.11.1-3) ... Removing libpython3.11-dev:amd64 (3.11.1-2) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-8) ... Removing libc-dev-bin (2.36-8) ... Removing libcrypt-dev:amd64 (1:4.4.33-2) ... Removing python3-all (3.11.1-3) ... Removing python3-distutils (3.10.8-1) ... Removing python3-six (1.16.0-4) ... Removing libpython3.11:amd64 (3.11.1-2) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libjs-sphinxdoc (5.3.0-3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing linux-libc-dev:amd64 (6.1.8-1) ... Removing python3-beniget (0.4.1-3) ... Removing python3-decorator (5.1.1-3) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.10.8-1) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-ply (3.11-5) ... Removing rpcsvc-proto (1.4.3-1) ... Removing gcc-12 (12.2.0-14) ... Removing binutils (2.40-2) ... Removing binutils-x86-64-linux-gnu (2.40-2) ... Removing libgprofng0:amd64 (2.40-2) ... Removing libctf0:amd64 (2.40-2) ... Removing libbinutils:amd64 (2.40-2) ... Removing binutils-common:amd64 (2.40-2) ... Removing cpp-12 (12.2.0-14) ... Removing libgcc-12-dev:amd64 (12.2.0-14) ... Removing libasan8:amd64 (12.2.0-14) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libcc1-0:amd64 (12.2.0-14) ... Removing libctf-nobfd0:amd64 (2.40-2) ... Removing python3 (3.11.1-3) ... Removing python3.11 (3.11.1-2) ... Removing python3-minimal (3.11.1-3) ... Removing python3.11-minimal (3.11.1-2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libpython3-stdlib:amd64 (3.11.1-3) ... Removing libpython3.11-stdlib:amd64 (3.11.1-2) ... find: '/usr/lib/python3': No such file or directory Removing libisl23:amd64 (0.25-1) ... Removing libitm1:amd64 (12.2.0-14) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-14) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libncursesw6:amd64 (6.4-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.11-minimal:amd64 (3.11.1-2) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (12.2.0-14) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-1) ... Removing libtsan2:amd64 (12.2.0-14) ... Removing libubsan1:amd64 (12.2.0-14) ... Removing media-types (9.0.0) ... Removing readline-common (8.2-1.3) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-1) ... Removing libkrb5-3:amd64 (1.20.1-1) ... Removing libk5crypto3:amd64 (1.20.1-1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-1) ... Removing libssl3:amd64 (3.0.7-2) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-8) ... 1m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'dcm2niix', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libturbojpeg0:amd64', 'libubsan1:amd64', 'libxml2:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.7:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-dev', 'python3-dicom', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-pythran', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'heudiconv'] 1m38.8s INFO: Running scripts post_remove 1m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_remove_exceptions'] 1m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_remove_exceptions'] 1m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'dcm2niix', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libturbojpeg0:amd64', 'libubsan1:amd64', 'libxml2:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.7:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-dev', 'python3-dicom', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-pythran', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m39.0s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 8053 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.40-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove dcm2niix which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-2) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-1) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.1-2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libturbojpeg0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libyaml-cpp0.7 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (9.0.0) ... Purging configuration files for openssl (3.0.7-2) ... Purging configuration files for python3 (3.11.1-3) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-ci-info which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dcmstack which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-dicom which isn't installed dpkg: warning: ignoring request to remove python3-dipy which isn't installed dpkg: warning: ignoring request to remove python3-dipy-lib which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-etelemetry which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-funcsigs which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-nibabel which isn't installed dpkg: warning: ignoring request to remove python3-nipype which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pydicom which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traits which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.1-2) ... Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'dcm2niix', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libturbojpeg0:amd64', 'libubsan1:amd64', 'libxml2:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.7:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'python3', 'python3-all', 'python3-all-dev', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-dev', 'python3-dicom', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-pythran', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--purge', 'heudiconv'] 1m39.0s DUMP: dpkg: warning: ignoring request to remove heudiconv which isn't installed 1m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--purge', 'heudiconv'] 1m39.0s INFO: Running scripts post_purge 1m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_purge_exceptions'] 1m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_purge_exceptions'] 1m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--purge', '--pending'] 1m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--purge', '--pending'] 1m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--remove', '--pending'] 1m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg', '--remove', '--pending'] 1m39.0s INFO: Running scripts post_test 1m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_test_exceptions'] 1m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'tmp/scripts/post_test_exceptions'] 1m39.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m39.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg-divert', '--list'] 1m39.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'dpkg-divert', '--list'] 1m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'clean'] 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx', 'apt-get', 'clean'] 1m39.5s DEBUG: Recording chroot state 1m40.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/shm'] 1m40.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/shm'] 1m40.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/console'] 1m40.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/console'] 1m40.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/ptmx'] 1m40.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/ptmx'] 1m40.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/pts'] 1m40.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/dev/pts'] 1m40.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/proc'] 1m40.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx/proc'] 1m40.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m40.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzy7lrrsx'] 1m40.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzy7lrrsx 1m40.6s INFO: PASS: Upgrading between Debian distributions. 1m40.6s INFO: PASS: All tests. 1m40.6s INFO: piuparts run ends. ret=0 End: 2023-02-04 04:24:03 GMT