Start: 2022-08-19 21:16:40 GMT [testing] Package: hinge Version: 0.5.0-7 Installed-Size: 3215 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libfmt8 (>= 8.0.1+ds1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3, daligner, dazzdb, dascrubber, python3-numpy, python3-ujson, python3-colormap, python3-pbcore, python3-networkx, python3-matplotlib Description: long read genome assembler based on hinging Homepage: https://github.com/HingeAssembler/HINGE Description-md5: 796f6bb30e0dd11acb73bb5eeeaf4c08 Section: science Priority: optional Filename: pool/main/h/hinge/hinge_0.5.0-7_amd64.deb Size: 480116 MD5sum: 4d56fcc99134a8c327a1bdfdd0c965a5 SHA256: a01409ad5142cf963de802c349cabb69bb3a382334e86d9ebd687fd36f7f5d5e [sid] Package: hinge Source: hinge (0.5.0-7) Version: 0.5.0-7+b1 Installed-Size: 3312 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libfmt9 (>= 9.0.0+ds1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3, daligner, dazzdb, dascrubber, python3-numpy, python3-ujson, python3-colormap, python3-pbcore, python3-networkx, python3-matplotlib Description: long read genome assembler based on hinging Homepage: https://github.com/HingeAssembler/HINGE Description-md5: 796f6bb30e0dd11acb73bb5eeeaf4c08 Section: science Priority: optional Filename: pool/main/h/hinge/hinge_0.5.0-7+b1_amd64.deb Size: 505728 MD5sum: 9b89d01939bf5489ba786271aec9c03c SHA256: 940548451cd461bdf2b0c520e85b5e9def9d7faa05bd1c1a2bddd0585dc54525 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt hinge=0.5.0-7+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt hinge=0.5.0-7+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-21-amd64 #1 SMP Debian 4.19.249-2 (2022-06-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpcqspu_m_ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpcqspu_m_ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpcqspu_m_/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'update'] 0m5.4s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [157 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8451 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5764 kB] Fetched 14.4 MB in 3s (4647 kB/s) Reading package lists... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'update'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: a9b7bb2cd036b61c02ba56c1aa90cbde - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_minimize'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_minimize'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_zz_backports'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_setup_zz_backports'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.0s DUMP: install ok installed adduser adduser 3.123 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-6.1 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-8 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-3 install ok installed libc6:amd64 libc6 2.34-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.263 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-13 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-13 install ok installed libpam-runtime libpam-runtime 1.4.0-13 install ok installed libpam0g:amd64 libpam0g 1.4.0-13 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-8 install ok installed libsystemd0:amd64 libsystemd0 251.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.3-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.30 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022b-1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 0m7.3s INFO: Running scripts is_testable 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/is_testable_uninstallable'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/is_testable_uninstallable'] 0m7.4s INFO: Running scripts pre_test 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_test_exceptions'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_test_exceptions'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_test_root_password'] 0m7.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_test_root_password'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'show', '--no-all-versions', 'hinge'] 0m7.6s DUMP: Package: hinge Version: 0.5.0-7 Installed-Size: 3215 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.33), libfmt8 (>= 8.0.1+ds1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3, daligner, dazzdb, dascrubber, python3-numpy, python3-ujson, python3-colormap, python3-pbcore, python3-networkx, python3-matplotlib Description-en: long read genome assembler based on hinging HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding ??hinges?? to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers. Description-md5: 796f6bb30e0dd11acb73bb5eeeaf4c08 Homepage: https://github.com/HingeAssembler/HINGE Section: science Priority: optional Filename: pool/main/h/hinge/hinge_0.5.0-7_amd64.deb Size: 480116 MD5sum: 4d56fcc99134a8c327a1bdfdd0c965a5 SHA256: a01409ad5142cf963de802c349cabb69bb3a382334e86d9ebd687fd36f7f5d5e 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'show', '--no-all-versions', 'hinge'] 0m7.6s INFO: apt-cache knows about the following packages: hinge 0m7.6s INFO: Running scripts pre_install 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_database-server'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_database-server'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_extras'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_extras'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy'] 0m7.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy', 'hinge'] 0m7.8s DUMP: hinge: Installed: (none) Candidate: 0.5.0-7 Version table: 0.5.0-7 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy', 'hinge'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-y', 'install', 'hinge'] 1m21.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: blt daligner dascrubber dazzdb fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libdouble-conversion3 libexpat1 libfmt8 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libicu71 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 liblerc4 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libpng16-16 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libtcl8.6 libtiff5 libtirpc-common libtirpc3 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 media-types python-matplotlib-data python3 python3-appdirs python3-attr python3-biopython python3-brotli python3-colorama python3-colorlog python3-colormap python3-cycler python3-dateutil python3-easydev python3-fonttools python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-munkres python3-networkx python3-numpy python3-packaging python3-pbcore python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-ptyprocess python3-pyparsing python3-pysam python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-ujson python3-unicodedata2 python3.10 python3.10-minimal readline-common sensible-utils tk8.6-blt2.5 ucf unicode-data w3c-sgml-lib x11-common xml-core Suggested packages: blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-networkx-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pbcore-doc python-pexpect-doc python-pil-doc python3-setuptools python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binutils binfmt-support readline-doc debhelper Recommended packages: ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python-biopython-doc ncbi-blast+ python3-bs4 python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-scipy python3-yaml python3-h5py python3-olefile isympy-common The following NEW packages will be installed: blt daligner dascrubber dazzdb fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 hinge libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libdouble-conversion3 libexpat1 libfmt8 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libicu71 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 liblerc4 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libpng16-16 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libtcl8.6 libtiff5 libtirpc-common libtirpc3 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 media-types python-matplotlib-data python3 python3-appdirs python3-attr python3-biopython python3-brotli python3-colorama python3-colorlog python3-colormap python3-cycler python3-dateutil python3-easydev python3-fonttools python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-munkres python3-networkx python3-numpy python3-packaging python3-pbcore python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-ptyprocess python3-pyparsing python3-pysam python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-ujson python3-unicodedata2 python3.10 python3.10-minimal readline-common sensible-utils tk8.6-blt2.5 ucf unicode-data w3c-sgml-lib x11-common xml-core 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 82.1 MB of archives. After this operation, 310 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.5-2 [2030 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-minimal amd64 3.10.6-1 [828 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.10-minimal amd64 3.10.6-1 [1993 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.10.5-3 [38.6 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.1.2-1.2 [73.9 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.1.2-1.2 [168 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.39.2-1 [838 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-stdlib amd64 3.10.6-1 [1685 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 python3.10 amd64 3.10.6-1 [545 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.10.5-3 [21.7 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.10.5-3 [38.2 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043 [74.0 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.12+dfsg-1 [1033 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b4 [275 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.37-5 [290 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config all 2.13.1-4.4 [281 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.13.1-4.4 [350 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.6-1 [114 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.1-2 [308 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.1-2 [772 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.4-1 [57.4 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.12-1 [779 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 daligner amd64 1.0+git20210330.f61b8cf-1 [214 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 dascrubber amd64 1.1-4 [168 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 dazzdb amd64 1.0+git20220426.8a55f0e-1 [204 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.6.1-1 [206 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libfmt8 amd64 8.1.1+ds1-2 [106 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.1.0-8 [116 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 59.6.0-1.2 [196 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.10.1-2 [156 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.1.0-8 [145 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.1.0-8 [792 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.10.1-2 [2202 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.21.5-1+b1 [3227 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 python3-ujson amd64 5.4.0-1+b1 [24.2 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.5.2-2 [2741 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.13.1-1 [152 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1 [189 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.72.3-1+b1 [1426 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 2.7.4-1+b1 [1469 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4 [11.0 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.12-1 [71.6 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-1 [170 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b1 [277 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-4 [314 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.2-2+b1 [98.4 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.2-2+b1 [108 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.2.0-1+b1 [467 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.10.6-1 [109 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.2.0-1+b1 [79.1 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.7-2 [140 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:89 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b4 [280 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 python3-munkres all 1.1.4-3 [11.5 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.1.0-1 [64.1 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.10.1-3 [4317 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.1-1 [34.8 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-2 [12.9 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-1 [96.6 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.1-1+b1 [1096 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.0+dfsg-1+b1 [25.5 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-unicodedata2 amd64 14.0.0+ds-8+b1 [296 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 14.0.0-1.1 [7868 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.34.4-1+b1 [822 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.3.2-1+b2 [55.7 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 21.3-1 [34.1 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.5.2-2 [6661 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.5-2 [29.4 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-colorlog all 6.6.0-1 [26.8 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-ptyprocess all 0.7.0-3 [14.9 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-pexpect all 4.8.0-3 [55.0 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-easydev all 0.12.0+dfsg-3 [35.2 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-colormap all 1.0.4-3 [15.4 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.11-1 [82.4 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.11-1 [42.3 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.11-1 [566 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.79+dfsg-3+b1 [1425 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-6 [38.4 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-6 [77.3 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2+b1 [226 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.48.0-1 [83.4 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.84.0-2 [355 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.2.2-1 [54.1 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.13+ds-2+b1 [397 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.17.0+ds-2+b2 [1618 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3-pbcore all 2.1.2+dfsg-2 [2832 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-networkx all 2.6.3-1 [943 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 hinge amd64 0.5.0-7 [480 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.1 MB in 4s (18.7 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6610 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.5-2_amd64.deb ... Unpacking libssl3:amd64 (3.0.5-2) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.6-1_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.6-1_amd64.deb ... Unpacking python3.10-minimal (3.10.6-1) ... Setting up libssl3:amd64 (3.0.5-2) ... Setting up libpython3.10-minimal:amd64 (3.10.6-1) ... Setting up libexpat1:amd64 (2.4.8-1) ... Setting up python3.10-minimal (3.10.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6925 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.10.5-3_amd64.deb ... Unpacking python3-minimal (3.10.5-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../02-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../03-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.20-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../05-libk5crypto3_1.20-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../06-libkeyutils1_1.6.3-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../07-libkrb5-3_1.20-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../08-libgssapi-krb5-2_1.20-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../09-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../10-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../11-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_8.1.2-1.2_all.deb ... Unpacking readline-common (8.1.2-1.2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../13-libreadline8_8.1.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.1.2-1.2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.39.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.39.2-1) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../15-libpython3.10-stdlib_3.10.6-1_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.6-1) ... Selecting previously unselected package python3.10. Preparing to unpack .../16-python3.10_3.10.6-1_amd64.deb ... Unpacking python3.10 (3.10.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.10.5-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.5-3) ... Setting up python3-minimal (3.10.5-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7424 files and directories currently installed.) Preparing to unpack .../000-python3_3.10.5-3_amd64.deb ... Unpacking python3 (3.10.5-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package ucf. Preparing to unpack .../002-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../003-libtcl8.6_8.6.12+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.12+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../004-libbrotli1_1.0.9-2+b4_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b4) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../005-libpng16-16_1.6.37-5_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../006-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../007-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../008-fonts-urw-base35_20200910-1_all.deb ... Unpacking fonts-urw-base35 (20200910-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../009-fontconfig-config_2.13.1-4.4_all.deb ... Unpacking fontconfig-config (2.13.1-4.4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../010-libfontconfig1_2.13.1-4.4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.4) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../011-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../012-libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../013-libbsd0_0.11.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.6-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../014-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../015-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../016-libx11-data_2%3a1.8.1-2_all.deb ... Unpacking libx11-data (2:1.8.1-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../017-libx11-6_2%3a1.8.1-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.1-2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../018-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../019-libxft2_2.3.4-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.4-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../020-libxext6_2%3a1.3.4-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../021-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../022-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../023-libtk8.6_8.6.12-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.12-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../024-tk8.6-blt2.5_2.5.3+dfsg-4.1_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../025-blt_2.5.3+dfsg-4.1_amd64.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package daligner. Preparing to unpack .../026-daligner_1.0+git20210330.f61b8cf-1_amd64.deb ... Unpacking daligner (1.0+git20210330.f61b8cf-1) ... Selecting previously unselected package dascrubber. Preparing to unpack .../027-dascrubber_1.1-4_amd64.deb ... Unpacking dascrubber (1.1-4) ... Selecting previously unselected package dazzdb. Preparing to unpack .../028-dazzdb_1.0+git20220426.8a55f0e-1_amd64.deb ... Unpacking dazzdb (1.0+git20220426.8a55f0e-1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../029-fonts-lyx_2.3.6.1-1_all.deb ... Unpacking fonts-lyx (2.3.6.1-1) ... Selecting previously unselected package libfmt8:amd64. Preparing to unpack .../030-libfmt8_8.1.1+ds1-2_amd64.deb ... Unpacking libfmt8:amd64 (8.1.1+ds1-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../031-libgomp1_12.1.0-8_amd64.deb ... Unpacking libgomp1:amd64 (12.1.0-8) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../032-python3-pkg-resources_59.6.0-1.2_all.deb ... Unpacking python3-pkg-resources (59.6.0-1.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../033-libblas3_3.10.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.10.1-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../034-libquadmath0_12.1.0-8_amd64.deb ... Unpacking libquadmath0:amd64 (12.1.0-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../035-libgfortran5_12.1.0-8_amd64.deb ... Unpacking libgfortran5:amd64 (12.1.0-8) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../036-liblapack3_3.10.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.10.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../037-python3-numpy_1%3a1.21.5-1+b1_amd64.deb ... Unpacking python3-numpy (1:1.21.5-1+b1) ... Selecting previously unselected package libdouble-conversion3:amd64. Preparing to unpack .../038-libdouble-conversion3_3.2.1-1_amd64.deb ... Unpacking libdouble-conversion3:amd64 (3.2.1-1) ... Selecting previously unselected package python3-ujson:amd64. Preparing to unpack .../039-python3-ujson_5.4.0-1+b1_amd64.deb ... Unpacking python3-ujson:amd64 (5.4.0-1+b1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../040-libjs-jquery_3.6.0+dfsg+~3.5.13-1_all.deb ... Unpacking libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../041-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../042-python-matplotlib-data_3.5.2-2_all.deb ... Unpacking python-matplotlib-data (3.5.2-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../043-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../044-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../045-libimagequant0_2.17.0-1_amd64.deb ... Unpacking libimagequant0:amd64 (2.17.0-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../046-libjpeg62-turbo_1%3a2.1.2-1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.2-1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../047-liblcms2-2_2.13.1-1_amd64.deb ... Unpacking liblcms2-2:amd64 (2.13.1-1) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../048-libopenjp2-7_2.5.0-1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../049-libfribidi0_1.0.8-2.1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../050-libglib2.0-0_2.72.3-1+b1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.72.3-1+b1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../051-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../052-libharfbuzz0b_2.7.4-1+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.7.4-1+b1) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../053-libraqm0_0.7.0-4_amd64.deb ... Unpacking libraqm0:amd64 (0.7.0-4) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../054-libdeflate0_1.12-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.12-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../055-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../056-liblerc4_4.0.0+ds-1_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../057-libwebp7_1.2.2-2+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.2.2-2+b1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../058-libtiff5_4.4.0-4_amd64.deb ... Unpacking libtiff5:amd64 (4.4.0-4) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../059-libwebpdemux2_1.2.2-2+b1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.2.2-2+b1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../060-libwebpmux3_1.2.2-2+b1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.2.2-2+b1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../061-python3-pil_9.2.0-1+b1_amd64.deb ... Unpacking python3-pil:amd64 (9.2.0-1+b1) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../062-python3-tk_3.10.6-1_amd64.deb ... Unpacking python3-tk:amd64 (3.10.6-1) ... Selecting previously unselected package python3-pil.imagetk:amd64. Preparing to unpack .../063-python3-pil.imagetk_9.2.0-1+b1_amd64.deb ... Unpacking python3-pil.imagetk:amd64 (9.2.0-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../064-python3-pyparsing_3.0.7-2_all.deb ... Unpacking python3-pyparsing (3.0.7-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../065-python3-cycler_0.11.0-1_all.deb ... Unpacking python3-cycler (0.11.0-1) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../066-python3-brotli_1.0.9-2+b4_amd64.deb ... Unpacking python3-brotli (1.0.9-2+b4) ... Selecting previously unselected package python3-munkres. Preparing to unpack .../067-python3-munkres_1.1.4-3_all.deb ... Unpacking python3-munkres (1.1.4-3) ... Selecting previously unselected package python3-attr. Preparing to unpack .../068-python3-attr_22.1.0-1_all.deb ... Unpacking python3-attr (22.1.0-1) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../069-python3-ufolib2_0.13.1+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.13.1+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../070-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../071-python3-sympy_1.10.1-3_all.deb ... Unpacking python3-sympy (1.10.1-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../072-python3-tz_2022.1-1_all.deb ... Unpacking python3-tz (2022.1-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../073-python3-appdirs_1.4.4-2_all.deb ... Unpacking python3-appdirs (1.4.4-2) ... Selecting previously unselected package python3-fs. Preparing to unpack .../074-python3-fs_2.4.16-1_all.deb ... Unpacking python3-fs (2.4.16-1) ... Selecting previously unselected package libicu71:amd64. Preparing to unpack .../075-libicu71_71.1-3_amd64.deb ... Unpacking libicu71:amd64 (71.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../076-libxml2_2.9.14+dfsg-1+b1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1+b1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../077-libxslt1.1_1.1.35-1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../078-python3-lxml_4.9.1-1+b1_amd64.deb ... Unpacking python3-lxml:amd64 (4.9.1-1+b1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../079-python3-lz4_4.0.0+dfsg-1+b1_amd64.deb ... Unpacking python3-lz4 (4.0.0+dfsg-1+b1) ... Selecting previously unselected package python3-unicodedata2. Preparing to unpack .../080-python3-unicodedata2_14.0.0+ds-8+b1_amd64.deb ... Unpacking python3-unicodedata2 (14.0.0+ds-8+b1) ... Selecting previously unselected package unicode-data. Preparing to unpack .../081-unicode-data_14.0.0-1.1_all.deb ... Unpacking unicode-data (14.0.0-1.1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../082-python3-fonttools_4.34.4-1+b1_amd64.deb ... Unpacking python3-fonttools (4.34.4-1+b1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../083-python3-kiwisolver_1.3.2-1+b2_amd64.deb ... Unpacking python3-kiwisolver (1.3.2-1+b2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../084-python3-packaging_21.3-1_all.deb ... Unpacking python3-packaging (21.3-1) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../085-libqhull-r8.0_2020.2-5_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-5) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../086-python3-matplotlib_3.5.2-2_amd64.deb ... Unpacking python3-matplotlib (3.5.2-2) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../087-python3-colorama_0.4.5-2_all.deb ... Unpacking python3-colorama (0.4.5-2) ... Selecting previously unselected package python3-colorlog. Preparing to unpack .../088-python3-colorlog_6.6.0-1_all.deb ... Unpacking python3-colorlog (6.6.0-1) ... Selecting previously unselected package python3-ptyprocess. Preparing to unpack .../089-python3-ptyprocess_0.7.0-3_all.deb ... Unpacking python3-ptyprocess (0.7.0-3) ... Selecting previously unselected package python3-pexpect. Preparing to unpack .../090-python3-pexpect_4.8.0-3_all.deb ... Unpacking python3-pexpect (4.8.0-3) ... Selecting previously unselected package python3-easydev. Preparing to unpack .../091-python3-easydev_0.12.0+dfsg-3_all.deb ... Unpacking python3-easydev (0.12.0+dfsg-3) ... Selecting previously unselected package python3-colormap. Preparing to unpack .../092-python3-colormap_1.0.4-3_all.deb ... Unpacking python3-colormap (1.0.4-3) ... Selecting previously unselected package python3-renderpm:amd64. Preparing to unpack .../093-python3-renderpm_3.6.11-1_amd64.deb ... Unpacking python3-renderpm:amd64 (3.6.11-1) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../094-python3-reportlab-accel_3.6.11-1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.6.11-1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../095-python3-reportlab_3.6.11-1_all.deb ... Unpacking python3-reportlab (3.6.11-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../096-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../097-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../098-python3-biopython_1.79+dfsg-3+b1_amd64.deb ... Unpacking python3-biopython (1.79+dfsg-3+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../099-libsasl2-modules-db_2.1.28+dfsg-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-6) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../100-libsasl2-2_2.1.28+dfsg-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-6) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../101-libldap-2.5-0_2.5.12+dfsg-2+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../102-libnghttp2-14_1.48.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.48.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../103-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../104-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../105-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../106-libcurl3-gnutls_7.84.0-2_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.84.0-2) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../107-libhtscodecs2_1.2.2-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.2.2-1) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../108-libhts3_1.13+ds-2+b1_amd64.deb ... Unpacking libhts3:amd64 (1.13+ds-2+b1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../109-python3-pysam_0.17.0+ds-2+b2_amd64.deb ... Unpacking python3-pysam (0.17.0+ds-2+b2) ... Selecting previously unselected package python3-pbcore. Preparing to unpack .../110-python3-pbcore_2.1.2+dfsg-2_all.deb ... Unpacking python3-pbcore (2.1.2+dfsg-2) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../111-python3-networkx_2.6.3-1_all.deb ... Unpacking python3-networkx (2.6.3-1) ... Selecting previously unselected package hinge. Preparing to unpack .../112-hinge_0.5.0-7_amd64.deb ... Unpacking hinge (0.5.0-7) ... Setting up libhtscodecs2:amd64 (1.2.2-1) ... Setting up media-types (8.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.13.1-1) ... Setting up libicu71:amd64 (71.1-3) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libdouble-conversion3:amd64 (3.2.1-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up liblerc4:amd64 (4.0.0+ds-1) ... Setting up libglib2.0-0:amd64 (2.72.3-1+b1) ... No schema files found: doing nothing. Setting up dascrubber (1.1-4) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.6.1-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b4) ... Setting up libsqlite3-0:amd64 (3.39.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.48.0-1) ... Setting up libdeflate0:amd64 (1.12-1) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libgomp1:amd64 (12.1.0-8) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-6) ... Setting up unicode-data (14.0.0-1.1) ... Setting up dazzdb (1.0+git20220426.8a55f0e-1) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up libx11-data (2:1.8.1-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.1.0-8) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.37-5) ... Setting up libtcl8.6:amd64 (8.6.12+dfsg-1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-6) ... Setting up libgfortran5:amd64 (12.1.0-8) ... Setting up libwebp7:amd64 (1.2.2-2+b1) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up sensible-utils (0.0.17) ... Setting up libfmt8:amd64 (8.1.1+ds1-2) ... Setting up xml-core (0.18+nmu1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up daligner (1.0+git20210330.f61b8cf-1) ... Setting up libopenjp2-7:amd64 (2.5.0-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up libtiff5:amd64 (4.4.0-4) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up python-matplotlib-data (3.5.2-2) ... Setting up libwebpmux3:amd64 (1.2.2-2+b1) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up readline-common (8.1.2-1.2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.2.2-2+b1) ... Setting up libreadline8:amd64 (8.1.2-1.2) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Setting up ucf (3.0043) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.1-2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1+b1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up fontconfig-config (2.13.1-4.4) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libcurl3-gnutls:amd64 (7.84.0-2) ... Setting up libraqm0:amd64 (0.7.0-4) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libhts3:amd64 (1.13+ds-2+b1) ... Setting up libpython3.10-stdlib:amd64 (3.10.6-1) ... Setting up libpython3-stdlib:amd64 (3.10.5-3) ... Setting up python3.10 (3.10.6-1) ... Setting up python3 (3.10.5-3) ... Setting up python3-ujson:amd64 (5.4.0-1+b1) ... Setting up python3-tz (2022.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pyparsing (3.0.7-2) ... Setting up python3-brotli (1.0.9-2+b4) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.11-1) ... Setting up python3-kiwisolver (1.3.2-1+b2) ... Setting up python3-lxml:amd64 (4.9.1-1+b1) ... Setting up python3-munkres (1.1.4-3) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-appdirs (1.4.4-2) ... Setting up python3-ptyprocess (0.7.0-3) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-sympy (1.10.1-3) ... Setting up python3-attr (22.1.0-1) ... Setting up python3-pysam (0.17.0+ds-2+b2) ... Setting up python3-renderpm:amd64 (3.6.11-1) ... Setting up python3-colorama (0.4.5-2) ... Setting up python3-colorlog (6.6.0-1) ... Setting up python3-lz4 (4.0.0+dfsg-1+b1) ... Setting up python3-unicodedata2 (14.0.0+ds-8+b1) ... Setting up python3-networkx (2.6.3-1) ... Setting up python3-fs (2.4.16-1) ... Setting up python3-packaging (21.3-1) ... Setting up python3-pexpect (4.8.0-3) ... Setting up python3-numpy (1:1.21.5-1+b1) ... Setting up python3-easydev (0.12.0+dfsg-3) ... Setting up python3-pil:amd64 (9.2.0-1+b1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-reportlab (3.6.11-1) ... Setting up python3-fonttools (4.34.4-1+b1) ... Processing triggers for sgml-base (1.30) ... Setting up libfontconfig1:amd64 (2.13.1-4.4) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up libxft2:amd64 (2.3.4-1) ... Setting up libtk8.6:amd64 (8.6.12-1) ... Processing triggers for libc-bin (2.34-3) ... Setting up python3-biopython (1.79+dfsg-3+b1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-tk:amd64 (3.10.6-1) ... Setting up python3-pil.imagetk:amd64 (9.2.0-1+b1) ... Setting up python3-pbcore (2.1.2+dfsg-2) ... Setting up python3-matplotlib (3.5.2-2) ... Setting up python3-colormap (1.0.4-3) ... Setting up hinge (0.5.0-7) ... Processing triggers for libc-bin (2.34-3) ... 1m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-y', 'install', 'hinge'] 1m21.4s INFO: Running scripts post_install 1m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_install_exceptions'] 1m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_install_exceptions'] 1m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m22.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m22.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpcqspu_m_ to sid 1m22.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m22.0s INFO: Running scripts pre_distupgrade 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_exceptions'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_exceptions'] 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'update'] 1m26.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [192 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9331 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6895 kB] Fetched 16.4 MB in 3s (4829 kB/s) Reading package lists... 1m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'update'] 1m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-yf', 'dist-upgrade'] 1m31.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libfmt8 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libfmt9 The following packages will be upgraded: base-passwd bash diffutils hinge libc-bin libc6 libhogweed6 libnettle8 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpython3-stdlib libsasl2-2 libsasl2-modules-db libsystemd0 libudev1 python3 python3-minimal python3-tz tzdata zlib1g 22 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 8760 kB of archives. After this operation, 414 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.1-6.1+b1 [1416 kB] Get:2 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.8-1 [387 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.34-4 [2765 kB] Get:4 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.0 [59.6 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.34-4 [897 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-2 [131 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-2 [114 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-2 [331 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.10.6-1 [38.7 kB] Get:10 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.10.6-1 [38.2 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-1 [21.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-2 [200 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.8.1-2 [288 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 251.4-1 [410 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 251.4-1 [183 kB] Get:17 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-4.1 [92.7 kB] Get:18 http://deb.debian.org/debian sid/main amd64 tzdata all 2022c-1 [290 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libfmt9 amd64 9.0.0+ds1-4 [112 kB] Get:20 http://deb.debian.org/debian sid/main amd64 hinge amd64 0.5.0-7+b1 [506 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-7 [38.5 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-7 [78.1 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-tz all 2022.2.1-1 [34.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8760 kB in 1s (10.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15939 files and directories currently installed.) Preparing to unpack .../bash_5.1-6.1+b1_amd64.deb ... Unpacking bash (5.1-6.1+b1) over (5.1-6.1) ... Setting up bash (5.1-6.1+b1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15940 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-1_amd64.deb ... Unpacking diffutils (1:3.8-1) over (1:3.7-5) ... Setting up diffutils (1:3.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15940 files and directories currently installed.) Preparing to unpack .../libc6_2.34-4_amd64.deb ... Unpacking libc6:amd64 (2.34-4) over (2.34-3) ... Setting up libc6:amd64 (2.34-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15940 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.0_amd64.deb ... Unpacking base-passwd (3.6.0) over (3.5.52) ... Setting up base-passwd (3.6.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15940 files and directories currently installed.) Preparing to unpack .../libc-bin_2.34-4_amd64.deb ... Unpacking libc-bin (2.34-4) over (2.34-3) ... Setting up libc-bin (2.34-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15940 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-2_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-2) over (1.4.0-13) ... Setting up libpam0g:amd64 (1.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15940 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-2_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-2) over (1.4.0-13) ... Setting up libpam-modules-bin (1.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15947 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-2_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-2) over (1.4.0-13) ... Setting up libpam-modules:amd64 (1.5.2-2) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.10.6-1_amd64.deb ... Unpacking python3-minimal (3.10.6-1) over (3.10.5-3) ... Setting up python3-minimal (3.10.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../python3_3.10.6-1_amd64.deb ... Unpacking python3 (3.10.6-1) over (3.10.5-3) ... Preparing to unpack .../libpython3-stdlib_3.10.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-1) over (3.10.5-3) ... Preparing to unpack .../libpam-runtime_1.5.2-2_all.deb ... Unpacking libpam-runtime (1.5.2-2) over (1.4.0-13) ... Setting up libpam-runtime (1.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../libnettle8_3.8.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.8.1-2_amd64.deb ... Unpacking libhogweed6:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libhogweed6:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../libsystemd0_251.4-1_amd64.deb ... Unpacking libsystemd0:amd64 (251.4-1) over (251.3-1) ... Setting up libsystemd0:amd64 (251.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../libudev1_251.4-1_amd64.deb ... Unpacking libudev1:amd64 (251.4-1) over (251.3-1) ... Setting up libudev1:amd64 (251.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-4.1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-4.1) over (1:1.2.11.dfsg-4) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-4.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15948 files and directories currently installed.) Preparing to unpack .../0-tzdata_2022c-1_all.deb ... Unpacking tzdata (2022c-1) over (2022b-1) ... Selecting previously unselected package libfmt9:amd64. Preparing to unpack .../1-libfmt9_9.0.0+ds1-4_amd64.deb ... Unpacking libfmt9:amd64 (9.0.0+ds1-4) ... Preparing to unpack .../2-hinge_0.5.0-7+b1_amd64.deb ... Unpacking hinge (0.5.0-7+b1) over (0.5.0-7) ... Preparing to unpack .../3-libsasl2-modules-db_2.1.28+dfsg-7_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-7) over (2.1.28+dfsg-6) ... Preparing to unpack .../4-libsasl2-2_2.1.28+dfsg-7_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-7) over (2.1.28+dfsg-6) ... Preparing to unpack .../5-python3-tz_2022.2.1-1_all.deb ... Unpacking python3-tz (2022.2.1-1) over (2022.1-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-7) ... Setting up tzdata (2022c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Aug 19 21:18:11 UTC 2022. Universal Time is now: Fri Aug 19 21:18:11 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsasl2-2:amd64 (2.1.28+dfsg-7) ... Setting up libfmt9:amd64 (9.0.0+ds1-4) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3 (3.10.6-1) ... Setting up python3-tz (2022.2.1-1) ... Setting up hinge (0.5.0-7+b1) ... Processing triggers for debianutils (5.7-0.3) ... Processing triggers for libc-bin (2.34-4) ... 1m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-yf', 'dist-upgrade'] 1m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m31.9s DUMP: 85cd29d47c714f1a33726afa6f3d8a85 - 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'show', '--no-all-versions', 'hinge'] 1m32.1s DUMP: Package: hinge Source: hinge (0.5.0-7) Version: 0.5.0-7+b1 Installed-Size: 3312 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libfmt9 (>= 9.0.0+ds1), libgcc-s1 (>= 3.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3, daligner, dazzdb, dascrubber, python3-numpy, python3-ujson, python3-colormap, python3-pbcore, python3-networkx, python3-matplotlib Description-en: long read genome assembler based on hinging HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding ??hinges?? to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers. Description-md5: 796f6bb30e0dd11acb73bb5eeeaf4c08 Homepage: https://github.com/HingeAssembler/HINGE Section: science Priority: optional Filename: pool/main/h/hinge/hinge_0.5.0-7+b1_amd64.deb Size: 505728 MD5sum: 9b89d01939bf5489ba786271aec9c03c SHA256: 940548451cd461bdf2b0c520e85b5e9def9d7faa05bd1c1a2bddd0585dc54525 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'show', '--no-all-versions', 'hinge'] 1m32.1s INFO: apt-cache knows about the following packages: hinge 1m32.1s INFO: Running scripts pre_install 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_database-server'] 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_database-server'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_exceptions'] 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_exceptions'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_extras'] 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_extras'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture'] 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy'] 1m32.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy', 'hinge'] 1m32.3s DUMP: hinge: Installed: 0.5.0-7+b1 Candidate: 0.5.0-7+b1 Version table: *** 0.5.0-7+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy', 'hinge'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-y', 'install', 'hinge'] 1m32.6s DUMP: Reading package lists... Building dependency tree... Reading state information... hinge is already the newest version (0.5.0-7+b1). The following package was automatically installed and is no longer required: libfmt8 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-y', 'install', 'hinge'] 1m32.6s INFO: Running scripts post_install 1m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_install_exceptions'] 1m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_install_exceptions'] 1m32.6s INFO: Running scripts post_distupgrade 1m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_exceptions'] 1m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_exceptions'] 1m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_zz_backports'] 1m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_distupgrade_zz_backports'] 1m32.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m33.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m33.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m33.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m33.9s INFO: Running scripts pre_install 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_database-server'] 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_database-server'] 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_exceptions'] 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_exceptions'] 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_extras'] 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_extras'] 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture'] 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy'] 1m34.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy', 'hinge'] 1m34.0s DUMP: hinge: Installed: 0.5.0-7+b1 Candidate: 0.5.0-7+b1 Version table: *** 0.5.0-7+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-cache', 'policy', 'hinge'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-y', 'install', 'hinge=0.5.0-7+b1'] 1m34.4s DUMP: Reading package lists... Building dependency tree... Reading state information... hinge is already the newest version (0.5.0-7+b1). The following package was automatically installed and is no longer required: libfmt8 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', '-y', 'install', 'hinge=0.5.0-7+b1'] 1m34.4s INFO: Running scripts post_install 1m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_install_exceptions'] 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_install_exceptions'] 1m34.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m35.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 1m35.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', '-ac', '--ignore-obsolete'] 1m37.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', '-ac', '--ignore-obsolete'] 1m37.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.3s DUMP: 0.15.2 1m37.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.3s INFO: Running adequate version 0.15.2 now. 1m37.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'hinge'] 1m37.4s DUMP: hinge: py-file-not-bytecompiled /usr/lib/hinge/add_groundtruth_json.py hinge: py-file-not-bytecompiled /usr/lib/hinge/clip_ends.py hinge: py-file-not-bytecompiled /usr/lib/hinge/compute_n50_from_draft.py hinge: py-file-not-bytecompiled /usr/lib/hinge/create_hgraph_nogt.py hinge: py-file-not-bytecompiled /usr/lib/hinge/download_NCTC_pipeline.py hinge: py-file-not-bytecompiled /usr/lib/hinge/get_NCTC_json.py hinge: py-file-not-bytecompiled /usr/lib/hinge/get_single_strand.py 1m37.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'hinge'] 1m37.4s ERROR: WARN: Inadequate results from running adequate! hinge: py-file-not-bytecompiled /usr/lib/hinge/add_groundtruth_json.py hinge: py-file-not-bytecompiled /usr/lib/hinge/clip_ends.py hinge: py-file-not-bytecompiled /usr/lib/hinge/compute_n50_from_draft.py hinge: py-file-not-bytecompiled /usr/lib/hinge/create_hgraph_nogt.py hinge: py-file-not-bytecompiled /usr/lib/hinge/download_NCTC_pipeline.py hinge: py-file-not-bytecompiled /usr/lib/hinge/get_NCTC_json.py hinge: py-file-not-bytecompiled /usr/lib/hinge/get_single_strand.py 1m37.4s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 1m37.4s INFO: Running scripts pre_remove 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m39.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m39.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_exceptions'] 1m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/pre_remove_exceptions'] 1m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m39.3s DUMP: install ok installed adduser adduser 3.123 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.1-6.1+b1 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed daligner daligner 1.0+git20210330.f61b8cf-1 install ok installed dascrubber dascrubber 1.1-4 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed dazzdb dazzdb 1.0+git20220426.8a55f0e-1 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed fontconfig-config fontconfig-config 2.13.1-4.4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-lyx fonts-lyx 2.3.6.1-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-1 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-8 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hinge hinge 0.5.0-7+b1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblas3:amd64 libblas3 3.10.1-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b4 install ok installed libbsd0:amd64 libbsd0 0.11.6-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-4 install ok installed libc6:amd64 libc6 2.34-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.84.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.263 install ok installed libdeflate0:amd64 libdeflate0 1.12-1 install ok installed libdouble-conversion3:amd64 libdouble-conversion3 3.2.1-1 install ok installed libexpat1:amd64 libexpat1 2.4.8-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfmt8:amd64 libfmt8 8.1.1+ds1-2 install ok installed libfmt9:amd64 libfmt9 9.0.0+ds1-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.4 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgfortran5:amd64 libgfortran5 12.1.0-8 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.72.3-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgomp1:amd64 libgomp1 12.1.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1+b1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhts3:amd64 libhts3 1.13+ds-2+b1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.2.2-1 install ok installed libicu71:amd64 libicu71 71.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1 install ok installed libjs-jquery libjs-jquery 3.6.0+dfsg+~3.5.13-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20-1 install ok installed liblapack3:amd64 liblapack3 3.10.1-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.13.1-1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.12+dfsg-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.3+20220423-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.48.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-5 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-1 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.6-1 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.6-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-5 install ok installed libquadmath0:amd64 libquadmath0 12.1.0-8 install ok installed libraqm0:amd64 libraqm0 0.7.0-4 install ok installed libreadline8:amd64 libreadline8 8.1.2-1.2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-7 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.39.2-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-8 install ok installed libsystemd0:amd64 libsystemd0 251.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.12+dfsg-1 install ok installed libtiff5:amd64 libtiff5 4.4.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.12-1 install ok installed libudev1:amd64 libudev1 251.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.2-2+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.2-2+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.1-2 install ok installed libx11-data libx11-data 2:1.8.1-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1 install ok installed libxft2:amd64 libxft2 2.3.4-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed python-matplotlib-data python-matplotlib-data 3.5.2-2 install ok installed python3 python3 3.10.6-1 install ok installed python3-appdirs python3-appdirs 1.4.4-2 install ok installed python3-attr python3-attr 22.1.0-1 install ok installed python3-biopython python3-biopython 1.79+dfsg-3+b1 install ok installed python3-brotli python3-brotli 1.0.9-2+b4 install ok installed python3-colorama python3-colorama 0.4.5-2 install ok installed python3-colorlog python3-colorlog 6.6.0-1 install ok installed python3-colormap python3-colormap 1.0.4-3 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-easydev python3-easydev 0.12.0+dfsg-3 install ok installed python3-fonttools python3-fonttools 4.34.4-1+b1 install ok installed python3-fs python3-fs 2.4.16-1 install ok installed python3-kiwisolver python3-kiwisolver 1.3.2-1+b2 install ok installed python3-lxml:amd64 python3-lxml 4.9.1-1+b1 install ok installed python3-lz4 python3-lz4 4.0.0+dfsg-1+b1 install ok installed python3-matplotlib python3-matplotlib 3.5.2-2 install ok installed python3-minimal python3-minimal 3.10.6-1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-munkres python3-munkres 1.1.4-3 install ok installed python3-networkx python3-networkx 2.6.3-1 install ok installed python3-numpy python3-numpy 1:1.21.5-1+b1 install ok installed python3-packaging python3-packaging 21.3-1 install ok installed python3-pbcore python3-pbcore 2.1.2+dfsg-2 install ok installed python3-pexpect python3-pexpect 4.8.0-3 install ok installed python3-pil:amd64 python3-pil 9.2.0-1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 9.2.0-1+b1 install ok installed python3-pkg-resources python3-pkg-resources 59.6.0-1.2 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-3 install ok installed python3-pyparsing python3-pyparsing 3.0.7-2 install ok installed python3-pysam python3-pysam 0.17.0+ds-2+b2 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.11-1 install ok installed python3-reportlab python3-reportlab 3.6.11-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.11-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-sympy python3-sympy 1.10.1-3 install ok installed python3-tk:amd64 python3-tk 3.10.6-1 install ok installed python3-tz python3-tz 2022.2.1-1 install ok installed python3-ufolib2 python3-ufolib2 0.13.1+dfsg1-1 install ok installed python3-ujson:amd64 python3-ujson 5.4.0-1+b1 install ok installed python3-unicodedata2 python3-unicodedata2 14.0.0+ds-8+b1 install ok installed python3.10 python3.10 3.10.6-1 install ok installed python3.10-minimal python3.10-minimal 3.10.6-1 install ok installed readline-common readline-common 8.1.2-1.2 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sgml-base sgml-base 1.30 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2022c-1 install ok installed ucf ucf 3.0043 install ok installed unicode-data unicode-data 14.0.0-1.1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 1m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'remove', 'blt', 'daligner', 'dascrubber', 'dazzdb', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libfmt8:amd64', 'libfmt9:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu71:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'media-types', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-brotli', 'python3-colorama', 'python3-colorlog', 'python3-colormap', 'python3-cycler', 'python3-dateutil', 'python3-easydev', 'python3-fonttools', 'python3-fs', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-munkres', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pbcore', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ptyprocess', 'python3-pyparsing', 'python3-pysam', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-ujson:amd64', 'python3-unicodedata2', 'python3.10', 'python3.10-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xml-core', 'hinge'] 2m16.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blt daligner dascrubber dazzdb fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 hinge libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libdouble-conversion3 libexpat1 libfmt8 libfmt9 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libicu71 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 liblerc4 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libpng16-16 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libtcl8.6 libtiff5 libtirpc-common libtirpc3 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 media-types python-matplotlib-data python3 python3-appdirs python3-attr python3-biopython python3-brotli python3-colorama python3-colorlog python3-colormap python3-cycler python3-dateutil python3-easydev python3-fonttools python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-munkres python3-networkx python3-numpy python3-packaging python3-pbcore python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-ptyprocess python3-pyparsing python3-pysam python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-ujson python3-unicodedata2 python3.10 python3.10-minimal readline-common sensible-utils tk8.6-blt2.5 ucf unicode-data w3c-sgml-lib x11-common xml-core 0 upgraded, 0 newly installed, 136 to remove and 0 not upgraded. After this operation, 310 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15955 files and directories currently installed.) Removing hinge (0.5.0-7+b1) ... Removing python3-pbcore (2.1.2+dfsg-2) ... Removing python3-biopython (1.79+dfsg-3+b1) ... Removing python3-reportlab (3.6.11-1) ... Removing python3-colormap (1.0.4-3) ... Removing python3-matplotlib (3.5.2-2) ... Removing daligner (1.0+git20210330.f61b8cf-1) ... Removing dascrubber (1.1-4) ... Removing dazzdb (1.0+git20220426.8a55f0e-1) ... Removing python-matplotlib-data (3.5.2-2) ... Removing fonts-dejavu-core (2.37-2) ... Removing fonts-lyx (2.3.6.1-1) ... Removing python3-renderpm:amd64 (3.6.11-1) ... Removing python3-numpy (1:1.21.5-1+b1) ... Removing liblapack3:amd64 (3.10.1-2) ... Removing libblas3:amd64 (3.10.1-2) ... Removing python3-pysam (0.17.0+ds-2+b2) ... Removing libhts3:amd64 (1.13+ds-2+b1) ... Removing libcurl3-gnutls:amd64 (7.84.0-2) ... Removing python3-ujson:amd64 (5.4.0-1+b1) ... Removing libdouble-conversion3:amd64 (3.2.1-1) ... Removing libfmt8:amd64 (8.1.1+ds1-2) ... Removing libfmt9:amd64 (9.0.0+ds1-4) ... Removing libgfortran5:amd64 (12.1.0-8) ... Removing libhtscodecs2:amd64 (1.2.2-1) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Removing libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Removing libnghttp2-14:amd64 (1.48.0-1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libqhull-r8.0:amd64 (2020.2-5) ... Removing libquadmath0:amd64 (12.1.0-8) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-7) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-7) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing python3-easydev (0.12.0+dfsg-3) ... Removing python3-colorama (0.4.5-2) ... Removing python3-colorlog (6.6.0-1) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.1-6) ... Removing python3-kiwisolver (1.3.2-1+b2) ... Removing python3-networkx (2.6.3-1) ... Removing python3-packaging (21.3-1) ... Removing python3-pexpect (4.8.0-3) ... Removing python3-ptyprocess (0.7.0-3) ... Removing python3-pyparsing (3.0.7-2) ... Removing python3-reportlab-accel:amd64 (3.6.11-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing python3-fonttools (4.34.4-1+b1) ... Removing python3-sympy (1.10.1-3) ... Removing python3-unicodedata2 (14.0.0+ds-8+b1) ... Removing python3-fs (2.4.16-1) ... Removing python3-six (1.16.0-4) ... Removing python3-lxml:amd64 (4.9.1-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1+b1) ... Removing libicu71:amd64 (71.1-3) ... Removing python3-appdirs (1.4.4-2) ... Removing python3-brotli (1.0.9-2+b4) ... Removing python3-lz4 (4.0.0+dfsg-1+b1) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-munkres (1.1.4-3) ... Removing python3-pkg-resources (59.6.0-1.2) ... Removing python3-tz (2022.2.1-1) ... Removing unicode-data (14.0.0-1.1) ... Removing python3-pil.imagetk:amd64 (9.2.0-1+b1) ... Removing python3-pil:amd64 (9.2.0-1+b1) ... Removing python3-tk:amd64 (3.10.6-1) ... Removing blt (2.5.3+dfsg-4.1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.12-1) ... Removing libxft2:amd64 (2.3.4-1) ... Removing libfontconfig1:amd64 (2.13.1-4.4) ... Removing fontconfig-config (2.13.1-4.4) ... Removing fonts-urw-base35 (20200910-1) ... Removing libraqm0:amd64 (0.7.0-4) ... Removing libharfbuzz0b:amd64 (2.7.4-1+b1) ... Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing libbrotli1:amd64 (1.0.9-2+b4) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libtiff5:amd64 (4.4.0-4) ... Removing libdeflate0:amd64 (1.12-1) ... Removing python3-ufolib2 (0.13.1+dfsg1-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libglib2.0-0:amd64 (2.72.3-1+b1) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgomp1:amd64 (12.1.0-8) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1) ... Removing liblcms2-2:amd64 (2.13.1-1) ... Removing liblerc4:amd64 (4.0.0+ds-1) ... Removing libopenjp2-7:amd64 (2.5.0-1) ... Removing libpng16-16:amd64 (1.6.37-5) ... Removing libtcl8.6:amd64 (8.6.12+dfsg-1) ... Removing libwebpmux3:amd64 (1.2.2-2+b1) ... Removing libwebpdemux2:amd64 (1.2.2-2+b1) ... Removing libwebp7:amd64 (1.2.2-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1) ... Removing python3-attr (22.1.0-1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.17) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libx11-6:amd64 (2:1.8.1-2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.6-1) ... Removing python3 (3.10.6-1) ... Removing python3-minimal (3.10.6-1) ... Removing python3.10 (3.10.6-1) ... Removing python3.10-minimal (3.10.6-1) ... Removing libexpat1:amd64 (2.4.8-1) ... Removing libpython3-stdlib:amd64 (3.10.6-1) ... Removing libpython3.10-stdlib:amd64 (3.10.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20-1) ... Removing libkrb5-3:amd64 (1.20-1) ... Removing libk5crypto3:amd64 (1.20-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20-1) ... Removing libmd0:amd64 (1.0.4-2) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20220423-2) ... Removing libpython3.10-minimal:amd64 (3.10.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1.2-1.2) ... Removing libsqlite3-0:amd64 (3.39.2-1) ... Removing libssl3:amd64 (3.0.5-2) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libx11-data (2:1.8.1-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing media-types (8.0.0) ... Removing readline-common (8.1.2-1.2) ... Processing triggers for sgml-base (1.30) ... Processing triggers for libc-bin (2.34-4) ... 2m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'remove', 'blt', 'daligner', 'dascrubber', 'dazzdb', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libfmt8:amd64', 'libfmt9:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu71:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'media-types', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-brotli', 'python3-colorama', 'python3-colorlog', 'python3-colormap', 'python3-cycler', 'python3-dateutil', 'python3-easydev', 'python3-fonttools', 'python3-fs', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-munkres', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pbcore', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ptyprocess', 'python3-pyparsing', 'python3-pysam', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-ujson:amd64', 'python3-unicodedata2', 'python3.10', 'python3.10-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xml-core', 'hinge'] 2m16.5s INFO: Running scripts post_remove 2m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_remove_exceptions'] 2m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_remove_exceptions'] 2m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--purge', 'blt', 'daligner', 'dascrubber', 'dazzdb', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libfmt8:amd64', 'libfmt9:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu71:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'media-types', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-brotli', 'python3-colorama', 'python3-colorlog', 'python3-colormap', 'python3-cycler', 'python3-dateutil', 'python3-easydev', 'python3-fonttools', 'python3-fs', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-munkres', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pbcore', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ptyprocess', 'python3-pyparsing', 'python3-pysam', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-ujson:amd64', 'python3-unicodedata2', 'python3.10', 'python3.10-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xml-core'] 2m17.0s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove daligner which isn't installed dpkg: warning: ignoring request to remove dascrubber which isn't installed dpkg: warning: ignoring request to remove dazzdb which isn't installed (Reading database ... 6663 files and directories currently installed.) Purging configuration files for fontconfig-config (2.13.1-4.4) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-1) ... dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfmt8 which isn't installed dpkg: warning: ignoring request to remove libfmt9 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.72.3-1+b1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20-1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libicu71 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.6-1) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed Purging configuration files for media-types (8.0.0) ... Purging configuration files for python-matplotlib-data (3.5.2-2) ... Purging configuration files for python3 (3.10.6-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-colorlog which isn't installed dpkg: warning: ignoring request to remove python3-colormap which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-easydev which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-munkres which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pbcore which isn't installed dpkg: warning: ignoring request to remove python3-pexpect which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed Purging configuration files for python3-sympy (1.10.1-3) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-ujson which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed Purging configuration files for python3.10-minimal (3.10.6-1) ... Purging configuration files for readline-common (8.1.2-1.2) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed Purging configuration files for ucf (3.0043) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: while removing xml-core, directory '/etc/sgml' not empty so not removed Processing triggers for sgml-base (1.30) ... 2m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--purge', 'blt', 'daligner', 'dascrubber', 'dazzdb', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'fonts-urw-base35', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libfmt8:amd64', 'libfmt9:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu71:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'media-types', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-brotli', 'python3-colorama', 'python3-colorlog', 'python3-colormap', 'python3-cycler', 'python3-dateutil', 'python3-easydev', 'python3-fonttools', 'python3-fs', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-munkres', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pbcore', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ptyprocess', 'python3-pyparsing', 'python3-pysam', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-ujson:amd64', 'python3-unicodedata2', 'python3.10', 'python3.10-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xml-core'] 2m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--purge', 'hinge'] 2m17.0s DUMP: dpkg: warning: ignoring request to remove hinge which isn't installed 2m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--purge', 'hinge'] 2m17.0s INFO: Running scripts post_purge 2m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_purge_exceptions'] 2m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_purge_exceptions'] 2m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--purge', '--pending'] 2m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--purge', '--pending'] 2m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--remove', '--pending'] 2m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg', '--remove', '--pending'] 2m17.0s INFO: Running scripts post_test 2m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_test_exceptions'] 2m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'tmp/scripts/post_test_exceptions'] 2m17.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 2m17.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 2m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg-divert', '--list'] 2m17.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'dpkg-divert', '--list'] 2m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'clean'] 2m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_', 'apt-get', 'clean'] 2m17.3s DEBUG: Recording chroot state 2m17.7s INFO: Warning: Package purging left files on system: /var/lib/sgml-base/supercatalog.old not owned 2m17.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/shm'] 2m18.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/shm'] 2m18.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/console'] 2m18.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/console'] 2m18.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/ptmx'] 2m18.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/ptmx'] 2m18.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/pts'] 2m18.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/dev/pts'] 2m18.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/proc'] 2m18.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_/proc'] 2m18.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 2m18.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcqspu_m_'] 2m18.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpcqspu_m_ 2m18.1s INFO: PASS: Upgrading between Debian distributions. 2m18.1s INFO: PASS: All tests. 2m18.1s INFO: piuparts run ends. ret=0 End: 2022-08-19 21:18:58 GMT