Start: 2022-08-25 23:02:40 GMT [testing] Package: idseq-bench Version: 0.0~git20210602.27fb6dc-1 Installed-Size: 94 Maintainer: Debian Med Packaging Team Architecture: all Depends: insilicoseq, ncbi-acc-download, python3-numpy, python3-sklearn, python3-smart-open, python3:any Description: Benchmark generator for the IDseq Portal Homepage: https://github.com/chanzuckerberg/idseq-bench Description-md5: 6cd81edbd88cc2308cae611159efb5f7 Section: science Priority: optional Filename: pool/main/i/idseq-bench/idseq-bench_0.0~git20210602.27fb6dc-1_all.deb Size: 23868 MD5sum: f9d1a6e461d5a5b821a09cf4aeb5b60e SHA256: e5b111b2fa17160ab7478d44c0288c2d96f75014184e4994c7d4218026715d43 [sid] Package: idseq-bench Version: 0.0~git20210602.27fb6dc-1 Installed-Size: 94 Maintainer: Debian Med Packaging Team Architecture: all Depends: insilicoseq, ncbi-acc-download, python3-numpy, python3-sklearn, python3-smart-open, python3:any Description: Benchmark generator for the IDseq Portal Homepage: https://github.com/chanzuckerberg/idseq-bench Description-md5: 6cd81edbd88cc2308cae611159efb5f7 Section: science Priority: optional Filename: pool/main/i/idseq-bench/idseq-bench_0.0~git20210602.27fb6dc-1_all.deb Size: 23868 MD5sum: f9d1a6e461d5a5b821a09cf4aeb5b60e SHA256: e5b111b2fa17160ab7478d44c0288c2d96f75014184e4994c7d4218026715d43 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'idseq-bench=0.0~git20210602.27fb6dc-1' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat --apt 'idseq-bench=0.0~git20210602.27fb6dc-1' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-21-amd64 #1 SMP Debian 4.19.249-2 (2022-06-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpgqqhjabj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpgqqhjabj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/ptmx'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/ptmx'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpgqqhjabj/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'update'] 0m5.3s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [157 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8479 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [5780 kB] Fetched 14.4 MB in 2s (6135 kB/s) Reading package lists... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'update'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-yf', 'dist-upgrade'] 0m6.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libpam-modules libpam-modules-bin libpam-runtime libpam0g 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 775 kB of archives. After this operation, 4096 B disk space will be freed. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpam0g amd64 1.5.2-2 [131 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpam-modules-bin amd64 1.5.2-2 [114 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libpam-modules amd64 1.5.2-2 [331 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libpam-runtime all 1.5.2-2 [200 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 775 kB in 0s (15.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6609 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-2_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-2) over (1.4.0-13) ... Setting up libpam0g:amd64 (1.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6609 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-2_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-2) over (1.4.0-13) ... Setting up libpam-modules-bin (1.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6616 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-2_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-2) over (1.4.0-13) ... Setting up libpam-modules:amd64 (1.5.2-2) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6617 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-2_all.deb ... Unpacking libpam-runtime (1.5.2-2) over (1.4.0-13) ... Setting up libpam-runtime (1.5.2-2) ... Processing triggers for libc-bin (2.34-4) ... 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-yf', 'dist-upgrade'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.9s DUMP: 3e9c1809d3074a5ce331a3697b1231a9 - 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.9s INFO: Running scripts post_setup 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DUMP: useradd warning: dummy1000's uid 1000 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1001's uid 1001 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1002's uid 1002 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1003's uid 1003 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1004's uid 1004 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1005's uid 1005 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1006's uid 1006 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1007's uid 1007 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1008's uid 1008 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1009's uid 1009 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. useradd warning: dummy1010's uid 1010 outside of the SYS_UID_MIN 101 and SYS_UID_MAX 999 range. 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_dummy_users'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DUMP: install ok installed adduser adduser 3.123 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.1-6.1+b1 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.1.0-8 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-4 install ok installed libc6:amd64 libc6 2.34-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.263 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.1.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.1.0-8 install ok installed libsystemd0:amd64 libsystemd0 251.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libudev1:amd64 libudev1 251.3-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.30 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/testing2sid/reference-chroot-metadata.dat 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 0m8.5s INFO: Running scripts is_testable 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s INFO: Running scripts pre_test 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_test_root_password'] 0m8.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_test_root_password'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'show', '--no-all-versions', 'idseq-bench'] 0m8.8s DUMP: Package: idseq-bench Version: 0.0~git20210602.27fb6dc-1 Installed-Size: 94 Maintainer: Debian Med Packaging Team Architecture: all Depends: insilicoseq, ncbi-acc-download, python3-numpy, python3-sklearn, python3-smart-open, python3:any Description-en: Benchmark generator for the IDseq Portal IDseq (Infectious Disease Sequencing Platform) is an unbiased global software platform that helps scientists identify pathogens in metagenomic sequencing data. . * Discover - Identify the pathogen landscape * Detect - Monitor and review potential outbreaks * Decipher - Find potential infecting organisms in large datasets . This package provides the benchmark generator for the IDseq Portal. Description-md5: 6cd81edbd88cc2308cae611159efb5f7 Homepage: https://github.com/chanzuckerberg/idseq-bench Section: science Priority: optional Filename: pool/main/i/idseq-bench/idseq-bench_0.0~git20210602.27fb6dc-1_all.deb Size: 23868 MD5sum: f9d1a6e461d5a5b821a09cf4aeb5b60e SHA256: e5b111b2fa17160ab7478d44c0288c2d96f75014184e4994c7d4218026715d43 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'show', '--no-all-versions', 'idseq-bench'] 0m8.8s INFO: apt-cache knows about the following packages: idseq-bench 0m8.8s INFO: Running scripts pre_install 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_database-server'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy'] 0m8.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release o=Debian,a=testing,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy', 'idseq-bench'] 0m8.9s DUMP: idseq-bench: Installed: (none) Candidate: 0.0~git20210602.27fb6dc-1 Version table: 0.0~git20210602.27fb6dc-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy', 'idseq-bench'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-y', 'install', 'idseq-bench'] 2m16.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates fonts-urw-base35 gir1.2-glib-2.0 insilicoseq libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libexpat1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libperl5.34 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libtiff5 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support ncbi-acc-download openssl perl perl-modules-5.34 procps python3 python3-adal python3-aiohttp python3-aiosignal python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-biopython python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-cryptography python3-dateutil python3-decorator python3-frozenlist python3-future python3-gi python3-idna python3-isodate python3-jmespath python3-joblib python3-jwt python3-lib2to3 python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-numpy python3-oauthlib python3-paramiko python3-pil python3-pkg-resources python3-portalocker python3-pysam python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-s3transfer python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-smart-open python3-threadpoolctl python3-typing-extensions python3-uamqp python3-urllib3 python3-yarl python3.10 python3.10-minimal readline-common w3c-sgml-lib xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gdbm-l10n krb5-doc krb5-user liblcms2-utils sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc python-azure-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-blinker-doc python-cryptography-doc python3-cryptography-vectors python-future-doc python3-crypto python-nacl-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python3-gssapi python-pil-doc python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-openssl python3-socks python-requests-doc python-scipy-doc python3-dap python-sklearn-doc ipython3 python3-brotli python3.10-venv python3.10-doc binutils binfmt-support readline-doc debhelper Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules bzip2 file xz-utils netbase psmisc libjs-jquery python-biopython-doc ncbi-blast+ python3-pytest python3-simplejson python3-psutil python3-invoke python3-olefile g++ | c++-compiler python3-nose python3-matplotlib The following NEW packages will be installed: ca-certificates fonts-urw-base35 gir1.2-glib-2.0 idseq-bench insilicoseq libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libexpat1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libperl5.34 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libtiff5 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support ncbi-acc-download openssl perl perl-modules-5.34 procps python3 python3-adal python3-aiohttp python3-aiosignal python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-biopython python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-cryptography python3-dateutil python3-decorator python3-frozenlist python3-future python3-gi python3-idna python3-isodate python3-jmespath python3-joblib python3-jwt python3-lib2to3 python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-numpy python3-oauthlib python3-paramiko python3-pil python3-pkg-resources python3-portalocker python3-pysam python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-s3transfer python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-smart-open python3-threadpoolctl python3-typing-extensions python3-uamqp python3-urllib3 python3-yarl python3.10 python3.10-minimal readline-common w3c-sgml-lib xml-core 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded. Need to get 84.4 MB of archives. After this operation, 893 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.34 all 5.34.0-5 [2850 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-1+b1 [83.0 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-1+b1 [58.9 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.34 amd64 5.34.0-5 [4177 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.34.0-5 [298 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.5-2 [2030 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-minimal amd64 3.10.6-1 [828 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3.10-minimal amd64 3.10.6-1 [1993 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.10.6-1 [38.7 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 media-types all 8.0.0 [33.4 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.1.2-1.2 [73.9 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.1.2-1.2 [168 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.39.2-1 [838 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libpython3.10-stdlib amd64 3.10.6-1 [1685 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 python3.10 amd64 3.10.6-1 [545 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.10.6-1 [21.7 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.10.6-1 [38.2 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.3+20220423-2 [102 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libprocps8 amd64 2:3.3.17-7+b1 [64.2 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:3.3.17-7+b1 [502 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.5-2 [1421 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20211016 [156 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.72.3-1+b1 [1426 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libgirepository-1.0-1 amd64 1.72.0-1+b1 [98.0 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 gir1.2-glib-2.0 amd64 1.72.0-1+b1 [156 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 59.6.0-1.2 [196 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.10.1-2 [156 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.1.0-8 [145 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.1.0-8 [792 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.10.1-2 [2202 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.21.5-1+b1 [3227 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b4 [275 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.37-5 [290 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.11-1 [82.4 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.11-1 [42.3 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.1.0-8 [116 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.13.1-1 [152 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1 [189 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 2.7.4-1+b1 [1469 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4 [11.0 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.12-1 [71.6 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-1 [170 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.2-2+b1 [277 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libtiff5 amd64 4.4.0-4 [314 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.2-2+b1 [98.4 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.2-2+b1 [108 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.6-1 [114 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.2.0-1+b1 [467 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.11-1 [566 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.79+dfsg-3+b1 [1425 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.10.6-1 [79.9 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 python3-joblib all 1.1.0-2 [218 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-7 [38.5 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-7 [78.1 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2+b1 [226 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.48.0-2 [83.7 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.84.0-2 [355 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.2.2-1 [54.1 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.13+ds-2+b1 [397 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.17.0+ds-2+b2 [1618 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 2.0.6-2 [30.6 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.9-1 [116 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 4.0.0-2 [99.1 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.27.1+dfsg-1 [71.9 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-11 [28.6 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.7.3-2 [14.8 MB] Get:101 http://deb.debian.org/debian bookworm/main amd64 insilicoseq all 1.5.4-2 [1469 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 ncbi-acc-download all 0.2.8-1 [12.8 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-sklearn-lib amd64 1.1.2+dfsg-5 [2261 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-sklearn all 1.1.2+dfsg-5 [2047 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-isodate all 0.6.1-1 [25.3 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-blinker all 1.4+dfsg1-0.5 [14.7 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-1 [87.1 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-cryptography amd64 3.4.8-2 [233 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-jwt all 2.4.0-1 [25.6 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-oauthlib all 3.2.0-1 [96.2 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-requests-oauthlib all 1.3.0+ds-0.1 [20.9 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-msrest all 0.6.21-2 [48.0 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-adal all 1.2.7-1 [32.5 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 python3-msrestazure all 0.6.4-1 [26.8 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.3.0-2 [43.2 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-avro all 1.11.0+dfsg-1 [68.1 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-multidict amd64 5.1.0-2+b1 [39.2 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3-yarl amd64 1.7.2-1+b1 [50.3 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-async-timeout all 4.0.1-1 [7660 B] Get:122 http://deb.debian.org/debian bookworm/main amd64 python3-frozenlist amd64 1.2.0-1+b2 [63.9 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 python3-aiosignal all 1.2.0-2 [6348 B] Get:124 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.1.0-1 [64.1 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 python3-aiohttp amd64 3.8.1-4+b1 [252 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 python3-msal all 1.18.0b1-1 [71.6 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 python3-gi amd64 3.42.2-1 [235 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 python3-portalocker all 2.2.1-1 [18.5 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 python3-msal-extensions all 1.0.0-1 [16.9 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3-uamqp amd64 1.5.3-1+b2 [646 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 python3-azure all 20220407+git-1 [9777 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 python3-azure-storage all 20220407+git-1 [263 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-botocore all 1.26.8+repack-1 [4865 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 python3-s3transfer all 0.6.0-1 [53.0 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 python3-boto3 all 1.23.8+dfsg-1 [155 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-bcrypt amd64 3.2.0-1+b1 [33.6 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libsodium23 amd64 1.0.18-1 [161 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 python3-nacl amd64 1.5.0-2 [59.3 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 python3-paramiko all 2.10.4-1 [135 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-smart-open all 5.2.1-4 [87.8 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 idseq-bench all 0.0~git20210602.27fb6dc-1 [23.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.4 MB in 1s (59.8 MB/s) Selecting previously unselected package perl-modules-5.34. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6619 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.34_5.34.0-5_all.deb ... Unpacking perl-modules-5.34 (5.34.0-5) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-1+b1_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-1+b1) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Preparing to unpack .../00-python3-minimal_3.10.6-1_amd64.deb ... Unpacking python3-minimal (3.10.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../06-libkrb5support0_1.20-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.20-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.20-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.20-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../12-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.1.2-1.2_all.deb ... Unpacking readline-common (8.1.2-1.2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../15-libreadline8_8.1.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.1.2-1.2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../16-libsqlite3-0_3.39.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.39.2-1) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../17-libpython3.10-stdlib_3.10.6-1_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.6-1) ... Selecting previously unselected package python3.10. Preparing to unpack .../18-python3.10_3.10.6-1_amd64.deb ... Unpacking python3.10 (3.10.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../19-libpython3-stdlib_3.10.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3-minimal (3.10.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9440 files and directories currently installed.) Preparing to unpack .../000-python3_3.10.6-1_amd64.deb ... 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Unpacking fonts-urw-base35 (20200910-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../007-libglib2.0-0_2.72.3-1+b1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.72.3-1+b1) ... Selecting previously unselected package libgirepository-1.0-1:amd64. Preparing to unpack .../008-libgirepository-1.0-1_1.72.0-1+b1_amd64.deb ... Unpacking libgirepository-1.0-1:amd64 (1.72.0-1+b1) ... Selecting previously unselected package gir1.2-glib-2.0:amd64. Preparing to unpack .../009-gir1.2-glib-2.0_1.72.0-1+b1_amd64.deb ... Unpacking gir1.2-glib-2.0:amd64 (1.72.0-1+b1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../010-python3-pkg-resources_59.6.0-1.2_all.deb ... Unpacking python3-pkg-resources (59.6.0-1.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../011-libblas3_3.10.1-2_amd64.deb ... Unpacking libblas3:amd64 (3.10.1-2) ... 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Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../029-libraqm0_0.7.0-4_amd64.deb ... Unpacking libraqm0:amd64 (0.7.0-4) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../030-libdeflate0_1.12-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.12-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../031-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../032-liblerc4_4.0.0+ds-1_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../033-libwebp7_1.2.2-2+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.2.2-2+b1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../034-libtiff5_4.4.0-4_amd64.deb ... Unpacking libtiff5:amd64 (4.4.0-4) ... 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Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../041-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../042-python3-pil_9.2.0-1+b1_amd64.deb ... Unpacking python3-pil:amd64 (9.2.0-1+b1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../043-python3-reportlab_3.6.11-1_all.deb ... Unpacking python3-reportlab (3.6.11-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../044-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../045-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../046-python3-biopython_1.79+dfsg-3+b1_amd64.deb ... Unpacking python3-biopython (1.79+dfsg-3+b1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../047-python3-lib2to3_3.10.6-1_all.deb ... Unpacking python3-lib2to3 (3.10.6-1) ... Selecting previously unselected package python3-future. Preparing to unpack .../048-python3-future_0.18.2-6_all.deb ... Unpacking python3-future (0.18.2-6) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../049-python3-joblib_1.1.0-2_all.deb ... Unpacking python3-joblib (1.1.0-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../050-libsasl2-modules-db_2.1.28+dfsg-7_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-7) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../051-libsasl2-2_2.1.28+dfsg-7_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-7) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../052-libldap-2.5-0_2.5.12+dfsg-2+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../053-libnghttp2-14_1.48.0-2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.48.0-2) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../054-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../055-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../056-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../057-libcurl3-gnutls_7.84.0-2_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.84.0-2) ... Selecting previously unselected package libhtscodecs2:amd64. 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Selecting previously unselected package python3-six. Preparing to unpack .../064-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../065-python3-urllib3_1.26.9-1_all.deb ... Unpacking python3-urllib3 (1.26.9-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../066-python3-chardet_4.0.0-2_all.deb ... Unpacking python3-chardet (4.0.0-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../067-python3-requests_2.27.1+dfsg-1_all.deb ... Unpacking python3-requests (2.27.1+dfsg-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../068-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../069-liblbfgsb0_3.0+dfsg.3-11_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../070-python3-scipy_1.7.3-2_amd64.deb ... Unpacking python3-scipy (1.7.3-2) ... Selecting previously unselected package insilicoseq. Preparing to unpack .../071-insilicoseq_1.5.4-2_all.deb ... Unpacking insilicoseq (1.5.4-2) ... Selecting previously unselected package ncbi-acc-download. Preparing to unpack .../072-ncbi-acc-download_0.2.8-1_all.deb ... Unpacking ncbi-acc-download (0.2.8-1) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../073-python3-threadpoolctl_3.1.0-1_all.deb ... Unpacking python3-threadpoolctl (3.1.0-1) ... Selecting previously unselected package python3-sklearn-lib:amd64. Preparing to unpack .../074-python3-sklearn-lib_1.1.2+dfsg-5_amd64.deb ... Unpacking python3-sklearn-lib:amd64 (1.1.2+dfsg-5) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../075-python3-sklearn_1.1.2+dfsg-5_all.deb ... Unpacking python3-sklearn (1.1.2+dfsg-5) ... Selecting previously unselected package python3-isodate. Preparing to unpack .../076-python3-isodate_0.6.1-1_all.deb ... Unpacking python3-isodate (0.6.1-1) ... Selecting previously unselected package python3-blinker. Preparing to unpack .../077-python3-blinker_1.4+dfsg1-0.5_all.deb ... Unpacking python3-blinker (1.4+dfsg1-0.5) ... Selecting previously unselected package python3-cffi-backend:amd64. Preparing to unpack .../078-python3-cffi-backend_1.15.1-1_amd64.deb ... Unpacking python3-cffi-backend:amd64 (1.15.1-1) ... Selecting previously unselected package python3-cryptography. Preparing to unpack .../079-python3-cryptography_3.4.8-2_amd64.deb ... Unpacking python3-cryptography (3.4.8-2) ... Selecting previously unselected package python3-jwt. Preparing to unpack .../080-python3-jwt_2.4.0-1_all.deb ... Unpacking python3-jwt (2.4.0-1) ... Selecting previously unselected package python3-oauthlib. 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Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../087-python3-typing-extensions_4.3.0-2_all.deb ... Unpacking python3-typing-extensions (4.3.0-2) ... Selecting previously unselected package python3-avro. Preparing to unpack .../088-python3-avro_1.11.0+dfsg-1_all.deb ... Unpacking python3-avro (1.11.0+dfsg-1) ... Selecting previously unselected package python3-multidict. Preparing to unpack .../089-python3-multidict_5.1.0-2+b1_amd64.deb ... Unpacking python3-multidict (5.1.0-2+b1) ... Selecting previously unselected package python3-yarl. Preparing to unpack .../090-python3-yarl_1.7.2-1+b1_amd64.deb ... Unpacking python3-yarl (1.7.2-1+b1) ... Selecting previously unselected package python3-async-timeout. Preparing to unpack .../091-python3-async-timeout_4.0.1-1_all.deb ... Unpacking python3-async-timeout (4.0.1-1) ... Selecting previously unselected package python3-frozenlist. Preparing to unpack .../092-python3-frozenlist_1.2.0-1+b2_amd64.deb ... Unpacking python3-frozenlist (1.2.0-1+b2) ... Selecting previously unselected package python3-aiosignal. Preparing to unpack .../093-python3-aiosignal_1.2.0-2_all.deb ... Unpacking python3-aiosignal (1.2.0-2) ... Selecting previously unselected package python3-attr. Preparing to unpack .../094-python3-attr_22.1.0-1_all.deb ... Unpacking python3-attr (22.1.0-1) ... Selecting previously unselected package python3-aiohttp. Preparing to unpack .../095-python3-aiohttp_3.8.1-4+b1_amd64.deb ... Unpacking python3-aiohttp (3.8.1-4+b1) ... Selecting previously unselected package python3-msal. Preparing to unpack .../096-python3-msal_1.18.0b1-1_all.deb ... Unpacking python3-msal (1.18.0b1-1) ... Selecting previously unselected package python3-gi. Preparing to unpack .../097-python3-gi_3.42.2-1_amd64.deb ... Unpacking python3-gi (3.42.2-1) ... Selecting previously unselected package python3-portalocker. 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Selecting previously unselected package python3-botocore. Preparing to unpack .../104-python3-botocore_1.26.8+repack-1_all.deb ... Unpacking python3-botocore (1.26.8+repack-1) ... Selecting previously unselected package python3-s3transfer. Preparing to unpack .../105-python3-s3transfer_0.6.0-1_all.deb ... Unpacking python3-s3transfer (0.6.0-1) ... Selecting previously unselected package python3-boto3. Preparing to unpack .../106-python3-boto3_1.23.8+dfsg-1_all.deb ... Unpacking python3-boto3 (1.23.8+dfsg-1) ... Selecting previously unselected package python3-bcrypt. Preparing to unpack .../107-python3-bcrypt_3.2.0-1+b1_amd64.deb ... Unpacking python3-bcrypt (3.2.0-1+b1) ... Selecting previously unselected package libsodium23:amd64. Preparing to unpack .../108-libsodium23_1.0.18-1_amd64.deb ... Unpacking libsodium23:amd64 (1.0.18-1) ... Selecting previously unselected package python3-nacl. Preparing to unpack .../109-python3-nacl_1.5.0-2_amd64.deb ... Unpacking python3-nacl (1.5.0-2) ... Selecting previously unselected package python3-paramiko. Preparing to unpack .../110-python3-paramiko_2.10.4-1_all.deb ... Unpacking python3-paramiko (2.10.4-1) ... Selecting previously unselected package python3-smart-open. Preparing to unpack .../111-python3-smart-open_5.2.1-4_all.deb ... Unpacking python3-smart-open (5.2.1-4) ... Selecting previously unselected package idseq-bench. Preparing to unpack .../112-idseq-bench_0.0~git20210602.27fb6dc-1_all.deb ... Unpacking idseq-bench (0.0~git20210602.27fb6dc-1) ... Setting up libhtscodecs2:amd64 (1.2.2-1) ... Setting up media-types (8.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.13.1-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libsodium23:amd64 (1.0.18-1) ... Setting up liblerc4:amd64 (4.0.0+ds-1) ... Setting up libglib2.0-0:amd64 (2.72.3-1+b1) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b4) ... Setting up libsqlite3-0:amd64 (3.39.2-1) ... Setting up libnghttp2-14:amd64 (1.48.0-2) ... Setting up libdeflate0:amd64 (1.12-1) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libgomp1:amd64 (12.1.0-8) ... Setting up perl-modules-5.34 (5.34.0-5) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-7) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.3+20220423-2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.1.0-8) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.37-5) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-7) ... Setting up libgfortran5:amd64 (12.1.0-8) ... Setting up libwebp7:amd64 (1.2.2-2+b1) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up xml-core (0.18+nmu1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-1) ... Setting up libgirepository-1.0-1:amd64 (1.72.0-1+b1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up libtiff5:amd64 (4.4.0-4) ... Setting up openssl (3.0.5-2) ... Setting up libwebpmux3:amd64 (1.2.2-2+b1) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up readline-common (8.1.2-1.2) ... Setting up libprocps8:amd64 (2:3.3.17-7+b1) ... Setting up libgdbm6:amd64 (1.23-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.2.2-2+b1) ... Setting up libreadline8:amd64 (8.1.2-1.2) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Setting up libgdbm-compat4:amd64 (1.23-1+b1) ... Setting up gir1.2-glib-2.0:amd64 (1.72.0-1+b1) ... Setting up procps (2:3.3.17-7+b1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1+b1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libperl5.34:amd64 (5.34.0-5) ... Setting up libcurl3-gnutls:amd64 (7.84.0-2) ... Setting up perl (5.34.0-5) ... Setting up libraqm0:amd64 (0.7.0-4) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libhts3:amd64 (1.13+ds-2+b1) ... Setting up mime-support (3.66) ... Setting up libpython3.10-stdlib:amd64 (3.10.6-1) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3.10 (3.10.6-1) ... Setting up python3 (3.10.6-1) ... Setting up python3-multidict (5.1.0-2+b1) ... Setting up python3-frozenlist (1.2.0-1+b2) ... Setting up python3-aiosignal (1.2.0-2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-pil:amd64 (9.2.0-1+b1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-avro (1.11.0+dfsg-1) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-gi (3.42.2-1) ... Setting up python3-reportlab-accel:amd64 (3.6.11-1) ... Setting up python3-idna (3.3-1) ... Setting up python3-typing-extensions (4.3.0-2) ... Setting up python3-urllib3 (1.26.9-1) ... Setting up python3-reportlab (3.6.11-1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.10.6-1) ... Setting up python3-yarl (1.7.2-1+b1) ... Setting up python3-cffi-backend:amd64 (1.15.1-1) ... Setting up python3-blinker (1.4+dfsg1-0.5) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-attr (22.1.0-1) ... Setting up python3-pysam (0.17.0+ds-2+b2) ... Setting up python3-renderpm:amd64 (3.6.11-1) ... Setting up python3-joblib (1.1.0-2) ... Setting up python3-jwt (2.4.0-1) ... Setting up python3-charset-normalizer (2.0.6-2) ... Setting up python3-bcrypt (3.2.0-1+b1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-uamqp (1.5.3-1+b2) ... Setting up python3-async-timeout (4.0.1-1) ... Setting up python3-chardet (4.0.0-2) ... Setting up python3-cryptography (3.4.8-2) ... Setting up python3-requests (2.27.1+dfsg-1) ... Setting up python3-numpy (1:1.21.5-1+b1) ... Setting up python3-adal (1.2.7-1) ... Setting up ncbi-acc-download (0.2.8-1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-nacl (1.5.0-2) ... Setting up python3-scipy (1.7.3-2) ... Setting up python3-aiohttp (3.8.1-4+b1) ... Setting up python3-msal (1.18.0b1-1) ... Setting up python3-sklearn-lib:amd64 (1.1.2+dfsg-5) ... Setting up python3-msal-extensions (1.0.0-1) ... Setting up python3-oauthlib (3.2.0-1) ... Setting up python3-botocore (1.26.8+repack-1) ... Setting up python3-sklearn (1.1.2+dfsg-5) ... Setting up python3-paramiko (2.10.4-1) ... Setting up python3-requests-oauthlib (1.3.0+ds-0.1) ... Setting up python3-s3transfer (0.6.0-1) ... Setting up python3-msrest (0.6.21-2) ... Setting up python3-boto3 (1.23.8+dfsg-1) ... Setting up python3-msrestazure (0.6.4-1) ... Setting up python3-azure (20220407+git-1) ... Setting up python3-azure-storage (20220407+git-1) ... Setting up python3-smart-open (5.2.1-4) ... Processing triggers for sgml-base (1.30) ... Setting up w3c-sgml-lib (1.3-3) ... Processing triggers for libc-bin (2.34-4) ... Setting up python3-biopython (1.79+dfsg-3+b1) ... Setting up insilicoseq (1.5.4-2) ... Setting up idseq-bench (0.0~git20210602.27fb6dc-1) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-y', 'install', 'idseq-bench'] 2m16.8s INFO: Running scripts post_install 2m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_install_exceptions'] 2m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_install_exceptions'] 2m16.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 2m19.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 2m19.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpgqqhjabj to sid 2m19.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 2m19.0s INFO: Running scripts pre_distupgrade 2m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_exceptions'] 2m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_exceptions'] 2m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'update'] 2m22.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [192 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9347 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6899 kB] Fetched 16.4 MB in 3s (5391 kB/s) Reading package lists... 2m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'update'] 2m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-yf', 'dist-upgrade'] 2m47.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-11-base gcc-12 libasan6 libasan8 libatomic1 libbinutils libboost-dev libboost1.74-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libexpat1-dev libgcc-11-dev libgcc-12-dev libgprofng0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 libmpfr6 libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpython3-all-dev libpython3-dev libpython3.10 libpython3.10-dev libstdc++-11-dev libstdc++-12-dev libtirpc-dev libtsan0 libtsan2 libubsan1 libxsimd-dev linux-libc-dev python3-all python3-all-dev python3-beniget python3-dev python3-distutils python3-gast python3-ply python3-pythran python3.10-dev rpcsvc-proto zlib1g-dev The following packages will be upgraded: adduser bash gcc-12-base gir1.2-glib-2.0 libc-bin libc6 libdebconfclient0 libgcc-s1 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libnghttp2-14 libquadmath0 libreadline8 libstdc++6 libsystemd0 libudev1 python3-certifi python3-decorator python3-gi python3-scipy readline-common 23 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After this operation, 563 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2~rc2-2 [1527 kB] Get:2 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-1 [208 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-1 [50.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 12.2.0-1 [145 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 12.2.0-1 [116 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 12.2.0-1 [793 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-1 [613 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.34-5 [2765 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.34-5 [898 kB] Get:10 http://deb.debian.org/debian sid/main amd64 adduser all 3.128 [131 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.264 [50.9 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 251.4-1 [410 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 251.4-1 [183 kB] Get:14 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2~rc2-2 [75.8 kB] Get:15 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.38.90.20220713-2 [2314 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.38.90.20220713-2 [589 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.38.90.20220713-2 [159 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.38.90.20220713-2 [95.9 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.38.90.20220713-2 [872 kB] Get:20 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.38.90.20220713-2 [2309 kB] Get:21 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.38.90.20220713-2 [63.7 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.25-1 [690 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.2.1-2 [44.6 kB] Get:25 http://deb.debian.org/debian sid/main amd64 cpp-12 amd64 12.2.0-1 [9766 kB] Get:26 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:12.1.0-3 [20.0 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 12.2.0-1 [41.7 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 12.2.0-1 [26.1 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 12.2.0-1 [9324 B] Get:30 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 12.2.0-1 [2193 kB] Get:31 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 12.2.0-1 [969 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 12.2.0-1 [2197 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 12.2.0-1 [883 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.2.0-1 [2437 kB] Get:35 http://deb.debian.org/debian sid/main amd64 gcc-12 amd64 12.2.0-1 [19.3 MB] Get:36 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:12.1.0-3 [5192 B] Get:37 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.34-5 [247 kB] Get:38 http://deb.debian.org/debian sid/main amd64 linux-libc-dev amd64 5.18.16-1 [1617 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.28-2 [118 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:42 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.34-5 [1896 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.2.0-1 [2045 kB] Get:45 http://deb.debian.org/debian sid/main amd64 g++-12 amd64 12.2.0-1 [10.7 MB] Get:46 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:12.1.0-3 [1644 B] Get:47 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.3.0-5 [209 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.73.3-2 [1449 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgirepository-1.0-1 amd64 1.73.0-2 [97.5 kB] Get:50 http://deb.debian.org/debian sid/main amd64 gir1.2-glib-2.0 amd64 1.73.0-2 [156 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libasan6 amd64 11.3.0-5 [2050 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libtsan0 amd64 11.3.0-5 [2017 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgcc-11-dev amd64 11.3.0-5 [2361 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libstdc++-11-dev amd64 11.3.0-5 [1970 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0-16.1+b1 [9541 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:57 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.4.8-1 [159 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.3~dfsg+~1.11.4-1 [116 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 4.5.0-4 [142 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.49.0-1 [81.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.20+ds-2 [6306 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.20+ds-2 [37.0 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libopenblas-pthread-dev amd64 0.3.20+ds-2 [4476 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libopenblas-dev amd64 0.3.20+ds-2 [49.1 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libpython3.10 amd64 3.10.6-1 [1752 kB] Get:67 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-4.1 [193 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libpython3.10-dev amd64 3.10.6-1 [4119 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.10.6-1 [22.0 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.10.6-1 [1068 B] Get:71 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2~rc2-2 [173 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.10.6-1 [141 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.10.6-1 [1060 B] Get:75 http://deb.debian.org/debian sid/main amd64 python3.10-dev amd64 3.10.6-1 [508 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.10.6-1 [25.4 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.10.6-1 [1068 B] Get:78 http://deb.debian.org/debian sid/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:79 http://deb.debian.org/debian sid/main amd64 python3-beniget all 0.4.1-2 [9808 B] Get:80 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2022.6.15-2 [154 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-2 [16.5 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-gi amd64 3.42.2-2 [235 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.8.1-10 [14.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 126 MB in 1s (107 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44282 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2~rc2-2_all.deb ... Unpacking readline-common (8.2~rc2-2) over (8.1.2-1.2) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../01-binutils-common_2.38.90.20220713-2_amd64.deb ... Unpacking binutils-common:amd64 (2.38.90.20220713-2) ... Selecting previously unselected package libbinutils:amd64. 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Selecting previously unselected package python3-ply. Preparing to unpack .../69-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../70-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Preparing to unpack .../71-python3-scipy_1.8.1-10_amd64.deb ... Unpacking python3-scipy (1.8.1-10) over (1.7.3-2) ... Setting up python3-distutils (3.10.6-1) ... Setting up gcc-11-base:amd64 (11.3.0-5) ... Setting up libpython3.10:amd64 (3.10.6-1) ... Setting up libglib2.0-0:amd64 (2.73.3-2) ... No schema files found: doing nothing. Setting up python3-ply (3.11-5) ... Setting up binutils-common:amd64 (2.38.90.20220713-2) ... Setting up libnghttp2-14:amd64 (1.49.0-1) ... Setting up python3-gast (0.5.2-2) ... Setting up linux-libc-dev:amd64 (5.18.16-1) ... Setting up libctf-nobfd0:amd64 (2.38.90.20220713-2) ... Setting up python3-all (3.10.6-1) ... Setting up libgomp1:amd64 (12.2.0-1) ... Setting up libasan6:amd64 (11.3.0-5) ... Setting up python3-beniget (0.4.1-2) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up python3-decorator (5.1.1-2) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up python3-certifi (2022.6.15-2) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up libquadmath0:amd64 (12.2.0-1) ... Setting up libmpc3:amd64 (1.2.1-2) ... Setting up libatomic1:amd64 (12.2.0-1) ... Setting up libgfortran5:amd64 (12.2.0-1) ... Setting up libubsan1:amd64 (12.2.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libcrypt-dev:amd64 (1:4.4.28-2) ... Setting up libasan8:amd64 (12.2.0-1) ... Setting up libgirepository-1.0-1:amd64 (1.73.0-2) ... Setting up libtsan2:amd64 (12.2.0-1) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up libbinutils:amd64 (2.38.90.20220713-2) ... Setting up libisl23:amd64 (0.25-1) ... Setting up libc-dev-bin (2.34-5) ... Setting up readline-common (8.2~rc2-2) ... Setting up libcc1-0:amd64 (12.2.0-1) ... Setting up liblsan0:amd64 (12.2.0-1) ... Setting up libitm1:amd64 (12.2.0-1) ... Setting up libjs-underscore (1.13.3~dfsg+~1.11.4-1) ... Setting up libtsan0:amd64 (11.3.0-5) ... Setting up libctf0:amd64 (2.38.90.20220713-2) ... Setting up cpp-12 (12.2.0-1) ... Setting up libopenblas0-pthread:amd64 (0.3.20+ds-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2~rc2-2) ... Setting up libgprofng0:amd64 (2.38.90.20220713-2) ... Setting up libgcc-12-dev:amd64 (12.2.0-1) ... Setting up gir1.2-glib-2.0:amd64 (1.73.0-2) ... Setting up libjs-sphinxdoc (4.5.0-4) ... Setting up libgcc-11-dev:amd64 (11.3.0-5) ... Setting up libopenblas0:amd64 (0.3.20+ds-2) ... Setting up cpp (4:12.1.0-3) ... Setting up libc6-dev:amd64 (2.34-5) ... Setting up binutils-x86-64-linux-gnu (2.38.90.20220713-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.20+ds-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libstdc++-12-dev:amd64 (12.2.0-1) ... Setting up binutils (2.38.90.20220713-2) ... Setting up libopenblas-dev:amd64 (0.3.20+ds-2) ... Setting up libexpat1-dev:amd64 (2.4.8-1) ... Setting up gcc-12 (12.2.0-1) ... Setting up python3-gi (3.42.2-2) ... Setting up libstdc++-11-dev:amd64 (11.3.0-5) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-4.1) ... Setting up g++-12 (12.2.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0-16.1+b1) ... Setting up gcc (4:12.1.0-3) ... Setting up libpython3.10-dev:amd64 (3.10.6-1) ... Setting up python3.10-dev (3.10.6-1) ... Setting up g++ (4:12.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.10.6-1) ... Setting up libpython3-all-dev:amd64 (3.10.6-1) ... Setting up python3-dev (3.10.6-1) ... Setting up python3-all-dev (3.10.6-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.8.1-10) ... Processing triggers for debianutils (5.7-0.3) ... Processing triggers for libc-bin (2.34-5) ... 2m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-yf', 'dist-upgrade'] 2m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m48.0s DUMP: ca92acbdb7d8a50efb3876b793277702 - 2m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'show', '--no-all-versions', 'idseq-bench'] 2m48.2s DUMP: Package: idseq-bench Version: 0.0~git20210602.27fb6dc-1 Installed-Size: 94 Maintainer: Debian Med Packaging Team Architecture: all Depends: insilicoseq, ncbi-acc-download, python3-numpy, python3-sklearn, python3-smart-open, python3:any Description-en: Benchmark generator for the IDseq Portal IDseq (Infectious Disease Sequencing Platform) is an unbiased global software platform that helps scientists identify pathogens in metagenomic sequencing data. . * Discover - Identify the pathogen landscape * Detect - Monitor and review potential outbreaks * Decipher - Find potential infecting organisms in large datasets . This package provides the benchmark generator for the IDseq Portal. Description-md5: 6cd81edbd88cc2308cae611159efb5f7 Homepage: https://github.com/chanzuckerberg/idseq-bench Section: science Priority: optional Filename: pool/main/i/idseq-bench/idseq-bench_0.0~git20210602.27fb6dc-1_all.deb Size: 23868 MD5sum: f9d1a6e461d5a5b821a09cf4aeb5b60e SHA256: e5b111b2fa17160ab7478d44c0288c2d96f75014184e4994c7d4218026715d43 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'show', '--no-all-versions', 'idseq-bench'] 2m48.2s INFO: apt-cache knows about the following packages: idseq-bench 2m48.2s INFO: Running scripts pre_install 2m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_database-server'] 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_database-server'] 2m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_exceptions'] 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_exceptions'] 2m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_extras'] 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_extras'] 2m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture'] 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture'] 2m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy'] 2m48.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m48.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy'] 2m48.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy', 'idseq-bench'] 2m48.3s DUMP: idseq-bench: Installed: 0.0~git20210602.27fb6dc-1 Candidate: 0.0~git20210602.27fb6dc-1 Version table: *** 0.0~git20210602.27fb6dc-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy', 'idseq-bench'] 2m48.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-y', 'install', 'idseq-bench'] 2m48.7s DUMP: Reading package lists... Building dependency tree... Reading state information... idseq-bench is already the newest version (0.0~git20210602.27fb6dc-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-y', 'install', 'idseq-bench'] 2m48.7s INFO: Running scripts post_install 2m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_install_exceptions'] 2m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_install_exceptions'] 2m48.7s INFO: Running scripts post_distupgrade 2m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_exceptions'] 2m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_exceptions'] 2m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_zz_backports'] 2m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_distupgrade_zz_backports'] 2m48.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 2m51.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 2m51.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 2m54.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 2m54.2s INFO: Running scripts pre_install 2m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_database-server'] 2m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_database-server'] 2m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_exceptions'] 2m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_exceptions'] 2m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_extras'] 2m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_extras'] 2m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture'] 2m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture'] 2m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy'] 2m54.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy'] 2m54.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy', 'idseq-bench'] 2m54.4s DUMP: idseq-bench: Installed: 0.0~git20210602.27fb6dc-1 Candidate: 0.0~git20210602.27fb6dc-1 Version table: *** 0.0~git20210602.27fb6dc-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-cache', 'policy', 'idseq-bench'] 2m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-y', 'install', 'idseq-bench=0.0~git20210602.27fb6dc-1'] 2m54.9s DUMP: Reading package lists... Building dependency tree... Reading state information... idseq-bench is already the newest version (0.0~git20210602.27fb6dc-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', '-y', 'install', 'idseq-bench=0.0~git20210602.27fb6dc-1'] 2m54.9s INFO: Running scripts post_install 2m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_install_exceptions'] 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_install_exceptions'] 2m55.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 2m57.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 3m1.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', '-ac', '--ignore-obsolete'] 3m7.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', '-ac', '--ignore-obsolete'] 3m7.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m7.8s DUMP: 0.15.2 3m7.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m7.8s INFO: Running adequate version 0.15.2 now. 3m7.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'idseq-bench'] 3m7.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'idseq-bench'] 3m7.9s INFO: Running scripts pre_remove 3m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_exceptions'] 3m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/pre_remove_exceptions'] 3m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m13.3s DUMP: install ok installed adduser adduser 3.128 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.2~rc2-2 install ok installed binutils binutils 2.38.90.20220713-2 install ok installed binutils-common:amd64 binutils-common 2.38.90.20220713-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.38.90.20220713-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed ca-certificates ca-certificates 20211016 install ok installed coreutils coreutils 8.32-4.1 install ok installed cpp cpp 4:12.1.0-3 install ok installed cpp-12 cpp-12 12.2.0-1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-8 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-1 install ok installed g++ g++ 4:12.1.0-3 install ok installed g++-12 g++-12 12.2.0-1 install ok installed gcc gcc 4:12.1.0-3 install ok installed gcc-11-base:amd64 gcc-11-base 11.3.0-5 install ok installed gcc-12 gcc-12 12.2.0-1 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-1 install ok installed gir1.2-glib-2.0:amd64 gir1.2-glib-2.0 1.73.0-2 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed idseq-bench idseq-bench 0.0~git20210602.27fb6dc-1 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed insilicoseq insilicoseq 1.5.4-2 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libasan6:amd64 libasan6 11.3.0-5 install ok installed libasan8:amd64 libasan8 12.2.0-1 install ok installed libatomic1:amd64 libatomic1 12.2.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libbinutils:amd64 libbinutils 2.38.90.20220713-2 install ok installed libblas3:amd64 libblas3 3.10.1-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-16.1+b1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b4 install ok installed libbsd0:amd64 libbsd0 0.11.6-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-5 install ok installed libc-dev-bin libc-dev-bin 2.34-5 install ok installed libc6:amd64 libc6 2.34-5 install ok installed libc6-dev:amd64 libc6-dev 2.34-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.28-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.38.90.20220713-2 install ok installed libctf0:amd64 libctf0 2.38.90.20220713-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.84.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libdeflate0:amd64 libdeflate0 1.12-1 install ok installed libexpat1:amd64 libexpat1 2.4.8-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.4.8-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-11-dev:amd64 libgcc-11-dev 11.3.0-5 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-1+b1 install ok installed libgdbm6:amd64 libgdbm6 1.23-1+b1 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-1 install ok installed libgirepository-1.0-1:amd64 libgirepository-1.0-1 1.73.0-2 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.73.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgomp1:amd64 libgomp1 12.2.0-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libgprofng0:amd64 libgprofng0 2.38.90.20220713-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1+b1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhts3:amd64 libhts3 1.13+ds-2+b1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.2.2-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libisl23:amd64 libisl23 0.25-1 install ok installed libitm1:amd64 libitm1 12.2.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.2-1 install ok installed libjs-jquery libjs-jquery 3.6.0+dfsg+~3.5.13-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 4.5.0-4 install ok installed libjs-underscore libjs-underscore 1.13.3~dfsg+~1.11.4-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20-1 install ok installed liblapack3:amd64 liblapack3 3.10.1-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-11 install ok installed liblcms2-2:amd64 liblcms2-2 2.13.1-1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.12+dfsg-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-1 install ok installed liblsan0:amd64 liblsan0 12.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libmpc3:amd64 libmpc3 1.2.1-2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libncurses6:amd64 libncurses6 6.3+20220423-2 install ok installed libncursesw6:amd64 libncursesw6 6.3+20220423-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.49.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.20+ds-2 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.20+ds-2 install ok installed libopenblas0:amd64 libopenblas0 0.3.20+ds-2 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.20+ds-2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libperl5.34:amd64 libperl5.34 5.34.0-5 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-5 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-7+b1 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.10.6-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.10.6-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.10.6-1 install ok installed libpython3.10:amd64 libpython3.10 3.10.6-1 install ok installed libpython3.10-dev:amd64 libpython3.10-dev 3.10.6-1 install ok installed libpython3.10-minimal:amd64 libpython3.10-minimal 3.10.6-1 install ok installed libpython3.10-stdlib:amd64 libpython3.10-stdlib 3.10.6-1 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-1 install ok installed libraqm0:amd64 libraqm0 0.7.0-4 install ok installed libreadline8:amd64 libreadline8 8.2~rc2-2 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-7 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libsodium23:amd64 libsodium23 1.0.18-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.39.2-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.5-2 install ok installed libstdc++-11-dev:amd64 libstdc++-11-dev 11.3.0-5 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 251.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtiff5:amd64 libtiff5 4.4.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtsan0:amd64 libtsan0 11.3.0-5 install ok installed libtsan2:amd64 libtsan2 12.2.0-1 install ok installed libubsan1:amd64 libubsan1 12.2.0-1 install ok installed libudev1:amd64 libudev1 251.4-1 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libwebp7:amd64 libwebp7 1.2.2-2+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.2-2+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.2-2+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed linux-libc-dev:amd64 linux-libc-dev 5.18.16-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 8.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.38.1-1 install ok installed ncbi-acc-download ncbi-acc-download 0.2.8-1 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed openssl openssl 3.0.5-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl perl 5.34.0-5 install ok installed perl-base perl-base 5.34.0-5 install ok installed perl-modules-5.34 perl-modules-5.34 5.34.0-5 install ok installed procps procps 2:3.3.17-7+b1 install ok installed python3 python3 3.10.6-1 install ok installed python3-adal python3-adal 1.2.7-1 install ok installed python3-aiohttp python3-aiohttp 3.8.1-4+b1 install ok installed python3-aiosignal python3-aiosignal 1.2.0-2 install ok installed python3-all python3-all 3.10.6-1 install ok installed python3-all-dev python3-all-dev 3.10.6-1 install ok installed python3-async-timeout python3-async-timeout 4.0.1-1 install ok installed python3-attr python3-attr 22.1.0-1 install ok installed python3-avro python3-avro 1.11.0+dfsg-1 install ok installed python3-azure python3-azure 20220407+git-1 install ok installed python3-azure-storage python3-azure-storage 20220407+git-1 install ok installed python3-bcrypt python3-bcrypt 3.2.0-1+b1 install ok installed python3-beniget python3-beniget 0.4.1-2 install ok installed python3-biopython python3-biopython 1.79+dfsg-3+b1 install ok installed python3-blinker python3-blinker 1.4+dfsg1-0.5 install ok installed python3-boto3 python3-boto3 1.23.8+dfsg-1 install ok installed python3-botocore python3-botocore 1.26.8+repack-1 install ok installed python3-certifi python3-certifi 2022.6.15-2 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.15.1-1 install ok installed python3-chardet python3-chardet 4.0.0-2 install ok installed python3-charset-normalizer python3-charset-normalizer 2.0.6-2 install ok installed python3-cryptography python3-cryptography 3.4.8-2 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-decorator python3-decorator 5.1.1-2 install ok installed python3-dev python3-dev 3.10.6-1 install ok installed python3-distutils python3-distutils 3.10.6-1 install ok installed python3-frozenlist python3-frozenlist 1.2.0-1+b2 install ok installed python3-future python3-future 0.18.2-6 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-gi python3-gi 3.42.2-2 install ok installed python3-idna python3-idna 3.3-1 install ok installed python3-isodate python3-isodate 0.6.1-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-joblib python3-joblib 1.1.0-2 install ok installed python3-jwt python3-jwt 2.4.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.10.6-1 install ok installed python3-minimal python3-minimal 3.10.6-1 install ok installed python3-msal python3-msal 1.18.0b1-1 install ok installed python3-msal-extensions python3-msal-extensions 1.0.0-1 install ok installed python3-msrest python3-msrest 0.6.21-2 install ok installed python3-msrestazure python3-msrestazure 0.6.4-1 install ok installed python3-multidict python3-multidict 5.1.0-2+b1 install ok installed python3-nacl python3-nacl 1.5.0-2 install ok installed python3-numpy python3-numpy 1:1.21.5-1+b1 install ok installed python3-oauthlib python3-oauthlib 3.2.0-1 install ok installed python3-paramiko python3-paramiko 2.10.4-1 install ok installed python3-pil:amd64 python3-pil 9.2.0-1+b1 install ok installed python3-pkg-resources python3-pkg-resources 59.6.0-1.2 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-portalocker python3-portalocker 2.2.1-1 install ok installed python3-pysam python3-pysam 0.17.0+ds-2+b2 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.11-1 install ok installed python3-reportlab python3-reportlab 3.6.11-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.11-1 install ok installed python3-requests python3-requests 2.27.1+dfsg-1 install ok installed python3-requests-oauthlib python3-requests-oauthlib 1.3.0+ds-0.1 install ok installed python3-s3transfer python3-s3transfer 0.6.0-1 install ok installed python3-scipy python3-scipy 1.8.1-10 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-sklearn python3-sklearn 1.1.2+dfsg-5 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 1.1.2+dfsg-5 install ok installed python3-smart-open python3-smart-open 5.2.1-4 install ok installed python3-threadpoolctl python3-threadpoolctl 3.1.0-1 install ok installed python3-typing-extensions python3-typing-extensions 4.3.0-2 install ok installed python3-uamqp python3-uamqp 1.5.3-1+b2 install ok installed python3-urllib3 python3-urllib3 1.26.9-1 install ok installed python3-yarl python3-yarl 1.7.2-1+b1 install ok installed python3.10 python3.10 3.10.6-1 install ok installed python3.10-dev python3.10-dev 3.10.6-1 install ok installed python3.10-minimal python3.10-minimal 3.10.6-1 install ok installed readline-common readline-common 8.2~rc2-2 install ok installed rpcsvc-proto rpcsvc-proto 1.4.2-4 install ok installed sed sed 4.8-1 install ok installed sgml-base sgml-base 1.30 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-4.1 3m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-11-base:amd64', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'insilicoseq', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-11-dev:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.34:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-11-dev:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'ncbi-acc-download', 'openssl', 'perl', 'perl-modules-5.34', 'procps', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-frozenlist', 'python3-future', 'python3-gast', 'python3-gi', 'python3-idna', 'python3-isodate', 'python3-jmespath', 'python3-joblib', 'python3-jwt', 'python3-lib2to3', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-numpy', 'python3-oauthlib', 'python3-paramiko', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-smart-open', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'readline-common', 'rpcsvc-proto', 'w3c-sgml-lib', 'xml-core', 'zlib1g-dev:amd64', 'idseq-bench'] 3m57.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 fonts-urw-base35 g++ g++-12 gcc gcc-11-base gcc-12 gir1.2-glib-2.0 idseq-bench insilicoseq libasan6 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libdeflate0 libexpat1 libexpat1-dev libfreetype6 libfribidi0 libgcc-11-dev libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmd0 libmpc3 libmpdec3 libmpfr6 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libperl5.34 libpng16-16 libprocps8 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libstdc++-11-dev libstdc++-12-dev libtiff5 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxsimd-dev linux-libc-dev mailcap media-types mime-support ncbi-acc-download openssl perl perl-modules-5.34 procps python3 python3-adal python3-aiohttp python3-aiosignal python3-all python3-all-dev python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-beniget python3-biopython python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-cryptography python3-dateutil python3-decorator python3-dev python3-distutils python3-frozenlist python3-future python3-gast python3-gi python3-idna python3-isodate python3-jmespath python3-joblib python3-jwt python3-lib2to3 python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-numpy python3-oauthlib python3-paramiko python3-pil python3-pkg-resources python3-ply python3-portalocker python3-pysam python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-s3transfer python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-smart-open python3-threadpoolctl python3-typing-extensions python3-uamqp python3-urllib3 python3-yarl python3.10 python3.10-dev python3.10-minimal readline-common rpcsvc-proto w3c-sgml-lib xml-core zlib1g-dev 0 upgraded, 0 newly installed, 204 to remove and 0 not upgraded. After this operation, 1455 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66758 files and directories currently installed.) Removing idseq-bench (0.0~git20210602.27fb6dc-1) ... Removing python3-sklearn (1.1.2+dfsg-5) ... Removing insilicoseq (1.5.4-2) ... Removing python3-scipy (1.8.1-10) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++ (4:12.1.0-3) ... Removing gcc (4:12.1.0-3) ... Removing python3-smart-open (5.2.1-4) ... Removing python3-azure-storage (20220407+git-1) ... Removing python3-azure (20220407+git-1) ... Removing python3-uamqp (1.5.3-1+b2) ... Removing cpp (4:12.1.0-3) ... Removing python3-biopython (1.79+dfsg-3+b1) ... Removing python3-renderpm:amd64 (3.6.11-1) ... Removing fonts-urw-base35 (20200910-1) ... Removing g++-12 (12.2.0-1) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-16.1+b1) ... Removing libstdc++-11-dev:amd64 (11.3.0-5) ... Removing libgcc-11-dev:amd64 (11.3.0-5) ... Removing libtsan0:amd64 (11.3.0-5) ... Removing libasan6:amd64 (11.3.0-5) ... Removing gcc-11-base:amd64 (11.3.0-5) ... Removing python3-msal-extensions (1.0.0-1) ... Removing python3-gi (3.42.2-2) ... Removing gir1.2-glib-2.0:amd64 (1.73.0-2) ... Removing libstdc++-12-dev:amd64 (12.2.0-1) ... Removing python3-sklearn-lib:amd64 (1.1.2+dfsg-5) ... Removing python3-numpy (1:1.21.5-1+b1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-11) ... Removing liblapack3:amd64 (3.10.1-2) ... Removing libblas3:amd64 (3.10.1-2) ... Removing python3-reportlab (3.6.11-1) ... Removing python3-pil:amd64 (9.2.0-1+b1) ... Removing libraqm0:amd64 (0.7.0-4) ... Removing libharfbuzz0b:amd64 (2.7.4-1+b1) ... Removing libfreetype6:amd64 (2.12.1+dfsg-3) ... Removing python3-pysam (0.17.0+ds-2+b2) ... Removing libhts3:amd64 (1.13+ds-2+b1) ... Removing libcurl3-gnutls:amd64 (7.84.0-2) ... Removing libbrotli1:amd64 (1.0.9-2+b4) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.6-1) ... Removing python3-all-dev (3.10.6-1) ... Removing libpython3-all-dev:amd64 (3.10.6-1) ... Removing python3-dev (3.10.6-1) ... Removing libpython3-dev:amd64 (3.10.6-1) ... Removing python3.10-dev (3.10.6-1) ... Removing libpython3.10-dev:amd64 (3.10.6-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-4.1) ... Removing libexpat1-dev:amd64 (2.4.8-1) ... Removing libc6-dev:amd64 (2.34-5) ... Removing libc-dev-bin (2.34-5) ... Removing libcrypt-dev:amd64 (1:4.4.28-2) ... Removing libtiff5:amd64 (4.4.0-4) ... Removing libdeflate0:amd64 (1.12-1) ... Removing python3-aiohttp (3.8.1-4+b1) ... Removing python3-yarl (1.7.2-1+b1) ... Removing python3-all (3.10.6-1) ... Removing python3-distutils (3.10.6-1) ... Removing python3-reportlab-accel:amd64 (3.6.11-1) ... Removing python3-boto3 (1.23.8+dfsg-1) ... Removing libpython3.10:amd64 (3.10.6-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing perl (5.34.0-5) ... Removing libperl5.34:amd64 (5.34.0-5) ... Removing libgdbm-compat4:amd64 (1.23-1+b1) ... Removing libgdbm6:amd64 (1.23-1+b1) ... Removing libopenblas-dev:amd64 (0.3.20+ds-2) ... Removing libopenblas-pthread-dev:amd64 (0.3.20+ds-2) ... Removing libopenblas0:amd64 (0.3.20+ds-2) ... Removing libopenblas0-pthread:amd64 (0.3.20+ds-2) ... Removing libgfortran5:amd64 (12.2.0-1) ... Removing libgirepository-1.0-1:amd64 (1.73.0-2) ... Removing libglib2.0-0:amd64 (2.73.3-2) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libhtscodecs2:amd64 (1.2.2-1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.2-1) ... Removing libjs-sphinxdoc (4.5.0-4) ... Removing libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Removing libjs-underscore (1.13.3~dfsg+~1.11.4-1) ... Removing liblcms2-2:amd64 (2.13.1-1) ... Removing libldap-2.5-0:amd64 (2.5.12+dfsg-2+b1) ... Removing liblerc4:amd64 (4.0.0+ds-1) ... Removing libmd0:amd64 (1.0.4-2) ... Removing python3-joblib (1.1.0-2) ... Removing procps (2:3.3.17-7+b1) ... Removing libncurses6:amd64 (6.3+20220423-2) ... Removing libnghttp2-14:amd64 (1.49.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-1) ... Removing libpng16-16:amd64 (1.6.37-5) ... Removing libprocps8:amd64 (2:3.3.17-7+b1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-7) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-7) ... Removing python3-paramiko (2.10.4-1) ... Removing python3-nacl (1.5.0-2) ... Removing libsodium23:amd64 (1.0.18-1) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing python3-msrestazure (0.6.4-1) ... Removing python3-adal (1.2.7-1) ... Removing libwebpmux3:amd64 (1.2.2-2+b1) ... Removing libwebpdemux2:amd64 (1.2.2-2+b1) ... Removing libwebp7:amd64 (1.2.2-2+b1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing linux-libc-dev:amd64 (5.18.16-1) ... Removing ncbi-acc-download (0.2.8-1) ... Removing perl-modules-5.34 (5.34.0-5) ... Removing python3-aiosignal (1.2.0-2) ... Removing python3-async-timeout (4.0.1-1) ... Removing python3-attr (22.1.0-1) ... Removing python3-avro (1.11.0+dfsg-1) ... Removing python3-bcrypt (3.2.0-1+b1) ... Removing python3-beniget (0.4.1-2) ... Removing python3-s3transfer (0.6.0-1) ... Removing python3-decorator (5.1.1-2) ... Removing python3-frozenlist (1.2.0-1+b2) ... Removing python3-future (0.18.2-6) ... Removing python3-gast (0.5.2-2) ... Removing python3-msal (1.18.0b1-1) ... Removing python3-lib2to3 (3.10.6-1) ... Removing python3-multidict (5.1.0-2+b1) ... Removing python3-ply (3.11-5) ... Removing python3-portalocker (2.2.1-1) ... Removing python3-threadpoolctl (3.1.0-1) ... Removing python3-typing-extensions (4.3.0-2) ... Removing rpcsvc-proto (1.4.2-4) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing gcc-12 (12.2.0-1) ... Removing binutils (2.38.90.20220713-2) ... Removing binutils-x86-64-linux-gnu (2.38.90.20220713-2) ... Removing libgprofng0:amd64 (2.38.90.20220713-2) ... Removing libctf0:amd64 (2.38.90.20220713-2) ... Removing libbinutils:amd64 (2.38.90.20220713-2) ... Removing binutils-common:amd64 (2.38.90.20220713-2) ... Removing python3-msrest (0.6.21-2) ... Removing python3-requests-oauthlib (1.3.0+ds-0.1) ... Removing cpp-12 (12.2.0-1) ... Removing libgcc-12-dev:amd64 (12.2.0-1) ... Removing libasan8:amd64 (12.2.0-1) ... Removing libatomic1:amd64 (12.2.0-1) ... Removing libcc1-0:amd64 (12.2.0-1) ... Removing libctf-nobfd0:amd64 (2.38.90.20220713-2) ... Removing python3-botocore (1.26.8+repack-1) ... Removing libgomp1:amd64 (12.2.0-1) ... Removing libisl23:amd64 (0.25-1) ... Removing libitm1:amd64 (12.2.0-1) ... Removing liblsan0:amd64 (12.2.0-1) ... Removing libmpc3:amd64 (1.2.1-2) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libquadmath0:amd64 (12.2.0-1) ... Removing python3-oauthlib (3.2.0-1) ... Removing python3-cryptography (3.4.8-2) ... Removing libtsan2:amd64 (12.2.0-1) ... Removing libubsan1:amd64 (12.2.0-1) ... Removing python3-blinker (1.4+dfsg1-0.5) ... Removing python3-cffi-backend:amd64 (1.15.1-1) ... Removing python3-dateutil (2.8.1-6) ... Removing python3-isodate (0.6.1-1) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-jwt (2.4.0-1) ... Removing python3-requests (2.27.1+dfsg-1) ... Removing python3-certifi (2022.6.15-2) ... Removing ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-urllib3 (1.26.9-1) ... Removing python3-six (1.16.0-4) ... Removing openssl (3.0.5-2) ... Removing python3-chardet (4.0.0-2) ... Removing python3-charset-normalizer (2.0.6-2) ... Removing python3-idna (3.3-1) ... Removing python3-pkg-resources (59.6.0-1.2) ... Removing python3 (3.10.6-1) ... Removing python3-minimal (3.10.6-1) ... Removing python3.10 (3.10.6-1) ... Removing python3.10-minimal (3.10.6-1) ... Removing libexpat1:amd64 (2.4.8-1) ... Removing libpython3-stdlib:amd64 (3.10.6-1) ... Removing libpython3.10-stdlib:amd64 (3.10.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncursesw6:amd64 (6.3+20220423-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.10-minimal:amd64 (3.10.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2~rc2-2) ... Removing libsqlite3-0:amd64 (3.39.2-1) ... Removing media-types (8.0.0) ... Removing readline-common (8.2~rc2-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20-1) ... Removing libkrb5-3:amd64 (1.20-1) ... Removing libk5crypto3:amd64 (1.20-1) ... Removing libkeyutils1:amd64 (1.6.3-1) ... Removing libkrb5support0:amd64 (1.20-1) ... Removing libssl3:amd64 (3.0.5-2) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for sgml-base (1.30) ... Processing triggers for libc-bin (2.34-5) ... 3m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-11-base:amd64', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'insilicoseq', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-11-dev:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.34:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-11-dev:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'ncbi-acc-download', 'openssl', 'perl', 'perl-modules-5.34', 'procps', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-frozenlist', 'python3-future', 'python3-gast', 'python3-gi', 'python3-idna', 'python3-isodate', 'python3-jmespath', 'python3-joblib', 'python3-jwt', 'python3-lib2to3', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-numpy', 'python3-oauthlib', 'python3-paramiko', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-smart-open', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'readline-common', 'rpcsvc-proto', 'w3c-sgml-lib', 'xml-core', 'zlib1g-dev:amd64', 'idseq-bench'] 3m57.7s INFO: Running scripts post_remove 3m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_remove_exceptions'] 3m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_remove_exceptions'] 3m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-11-base:amd64', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'insilicoseq', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-11-dev:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.34:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-11-dev:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'ncbi-acc-download', 'openssl', 'perl', 'perl-modules-5.34', 'procps', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-frozenlist', 'python3-future', 'python3-gast', 'python3-gi', 'python3-idna', 'python3-isodate', 'python3-jmespath', 'python3-joblib', 'python3-jwt', 'python3-lib2to3', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-numpy', 'python3-oauthlib', 'python3-paramiko', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-smart-open', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'readline-common', 'rpcsvc-proto', 'w3c-sgml-lib', 'xml-core', 'zlib1g-dev:amd64'] 3m58.0s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed (Reading database ... 6636 files and directories currently installed.) Purging configuration files for ca-certificates (20211016) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed Purging configuration files for fonts-urw-base35 (20200910-1) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-11-base which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gir1.2-glib-2.0 which isn't installed dpkg: warning: ignoring request to remove insilicoseq which isn't installed dpkg: warning: ignoring request to remove libasan6 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.28-2) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-11-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgirepository-1.0-1 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.73.3-2) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20-1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libperl5.34 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.10 which isn't installed dpkg: warning: ignoring request to remove libpython3.10-dev which isn't installed Purging configuration files for libpython3.10-minimal:amd64 (3.10.6-1) ... dpkg: warning: ignoring request to remove libpython3.10-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-11-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (8.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed dpkg: warning: ignoring request to remove ncbi-acc-download which isn't installed Purging configuration files for openssl (3.0.5-2) ... Purging configuration files for perl (5.34.0-5) ... dpkg: warning: ignoring request to remove perl-modules-5.34 which isn't installed Purging configuration files for procps (2:3.3.17-7+b1) ... Purging configuration files for python3 (3.10.6-1) ... dpkg: warning: ignoring request to remove python3-adal which isn't installed dpkg: warning: ignoring request to remove python3-aiohttp which isn't installed dpkg: warning: ignoring request to remove python3-aiosignal which isn't installed dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-async-timeout which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-avro which isn't installed dpkg: warning: ignoring request to remove python3-azure which isn't installed dpkg: warning: ignoring request to remove python3-azure-storage which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-frozenlist which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-gi which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-msal which isn't installed dpkg: warning: ignoring request to remove python3-msal-extensions which isn't installed dpkg: warning: ignoring request to remove python3-msrest which isn't installed dpkg: warning: ignoring request to remove python3-msrestazure which isn't installed dpkg: warning: ignoring request to remove python3-multidict which isn't installed dpkg: warning: ignoring request to remove python3-nacl which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-paramiko which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-portalocker which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-sklearn which isn't installed dpkg: warning: ignoring request to remove python3-sklearn-lib which isn't installed dpkg: warning: ignoring request to remove python3-smart-open which isn't installed dpkg: warning: ignoring request to remove python3-threadpoolctl which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-uamqp which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-yarl which isn't installed dpkg: warning: ignoring request to remove python3.10 which isn't installed dpkg: warning: ignoring request to remove python3.10-dev which isn't installed Purging configuration files for python3.10-minimal (3.10.6-1) ... Purging configuration files for readline-common (8.2~rc2-2) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: while removing xml-core, directory '/etc/sgml' not empty so not removed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed Processing triggers for sgml-base (1.30) ... 3m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-11-base:amd64', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'insilicoseq', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-11-dev:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libperl5.34:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.10:amd64', 'libpython3.10-dev:amd64', 'libpython3.10-minimal:amd64', 'libpython3.10-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-11-dev:amd64', 'libstdc++-12-dev:amd64', 'libtiff5:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'mailcap', 'media-types', 'mime-support', 'ncbi-acc-download', 'openssl', 'perl', 'perl-modules-5.34', 'procps', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-frozenlist', 'python3-future', 'python3-gast', 'python3-gi', 'python3-idna', 'python3-isodate', 'python3-jmespath', 'python3-joblib', 'python3-jwt', 'python3-lib2to3', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-numpy', 'python3-oauthlib', 'python3-paramiko', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-pysam', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-smart-open', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-yarl', 'python3.10', 'python3.10-dev', 'python3.10-minimal', 'readline-common', 'rpcsvc-proto', 'w3c-sgml-lib', 'xml-core', 'zlib1g-dev:amd64'] 3m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--purge', 'idseq-bench'] 3m58.0s DUMP: dpkg: warning: ignoring request to remove idseq-bench which isn't installed 3m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--purge', 'idseq-bench'] 3m58.0s INFO: Running scripts post_purge 3m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_purge_exceptions'] 3m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_purge_exceptions'] 3m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--purge', '--pending'] 3m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--purge', '--pending'] 3m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--remove', '--pending'] 3m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg', '--remove', '--pending'] 3m58.0s INFO: Running scripts post_test 3m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_test_exceptions'] 3m58.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'tmp/scripts/post_test_exceptions'] 3m58.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 3m58.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 3m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg-divert', '--list'] 3m58.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 3m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'dpkg-divert', '--list'] 3m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'clean'] 3m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj', 'apt-get', 'clean'] 3m58.3s DEBUG: Recording chroot state 3m58.6s INFO: Warning: Package purging left files on system: /var/lib/sgml-base/supercatalog.old not owned 3m58.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/shm'] 3m58.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/shm'] 3m58.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/console'] 3m58.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/console'] 3m58.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/ptmx'] 3m58.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/ptmx'] 3m58.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/pts'] 3m58.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/dev/pts'] 3m58.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/proc'] 3m58.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj/proc'] 3m58.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 3m59.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgqqhjabj'] 3m59.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpgqqhjabj 3m59.0s INFO: PASS: Upgrading between Debian distributions. 3m59.0s INFO: PASS: All tests. 3m59.0s INFO: piuparts run ends. ret=0 End: 2022-08-25 23:06:39 GMT